BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147179.6 + phase: 0 /pseudo
(660 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17430 ovule development protein aintegumenta-like protein 338 7e-93
At1g51190 unknown protein 280 1e-75
At3g20840 putative transcription factor 261 1e-69
At5g57390 putative protein 244 8e-65
At4g37750 ovule development protein aintegumenta (ANT) 239 5e-63
At5g10510 ovule development protein - like 231 7e-61
At5g65510 putative protein 229 3e-60
At1g72570 putative AP2 domain transcription factor 224 1e-58
At1g16060 transcription factor like CKC protein 171 1e-42
At2g41710 AP2 domain transcription factor like protein 169 3e-42
At3g54320 aintegumaenta-like protein 156 4e-38
At1g79700 hypothetical protein 149 6e-36
At4g36920 APETALA2 protein 114 2e-25
At2g28550 AP2 transcription factor like protein 112 9e-25
At5g67180 floral homeotic protein apetala2-like 107 2e-23
At5g60120 APETALA2 protein - like 107 2e-23
At3g54990 APETALA2 - like protein 102 7e-22
At2g39250 putative AP2 domain transcription factor 101 2e-21
At2g31230 ethylene reponse factor-like AP2 domain transcription ... 58 1e-08
At3g23240 ethylene response factor 1 57 3e-08
>At5g17430 ovule development protein aintegumenta-like protein
Length = 581
Score = 338 bits (866), Expect = 7e-93
Identities = 262/680 (38%), Positives = 341/680 (49%), Gaps = 176/680 (25%)
Query: 5 NLLGFSLSPQEQ-HPSTQDQTVASRFGFNPNEISGSDVQGDHCYDLSSHTTPHHSLNLSH 63
N LGFSLSP +Q H T + +R + DV G +C+DL++ + ++ S
Sbjct: 6 NWLGFSLSPHDQNHHRTDVDSSTTR--------TAVDVAGGYCFDLAAPSDESSAVQTSF 57
Query: 64 --PFSI-YEAFHTNNNIHTTQDWKENYNNQNLLLGTSCMNQNVNNNNQQAQPKLENFLGG 120
PF + EAF +NN H+ +DW N G +C N N NN+Q PKLENFLG
Sbjct: 58 LSPFGVTLEAFTRDNNSHS-RDWDIN--------GGACNNIN---NNEQNGPKLENFLGR 105
Query: 121 HS--FTDHQEYGGSNSYSSLHLPPHQPEASCGGGDGSTSNNNSIGLSMIKTWLRNQPPPP 178
+ + ++ N CGGGDG S+GLSMIKTWL N
Sbjct: 106 TTTIYNTNETVVDGNG-------------DCGGGDGG--GGGSLGLSMIKTWLSNHSVAN 150
Query: 179 ENNNNNNNESGARVQTLSLSMSTGSQSSSSVPLLNANVMSGEISSSENKQPPTTAVVLDS 238
N+ +N N GAR +LS++ ST S N VV +
Sbjct: 151 ANHQDNGN--GARGLSLSMNSST---------------------SDSNNYNNNDDVVQEK 187
Query: 239 NQTSVVESAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFV 298
VVE+ P+K++++FGQRTSIYRGVTRHRWTGRYEAHLWDNSC+REGQTRKGRQ
Sbjct: 188 TIVDVVETT-PKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQ--- 243
Query: 299 GGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGF 358
GGYDKEEKAARAYDLAALKYWGTTTTTNFP+S YEKEVEEMKHMTRQEYVASLRRKSSGF
Sbjct: 244 GGYDKEEKAARAYDLAALKYWGTTTTTNFPLSEYEKEVEEMKHMTRQEYVASLRRKSSGF 303
Query: 359 SRGASIYRGVTR-----------------------------QTSSTW*MAS*DWKSCRQQ 389
SRGASIYRGVTR + + + +A+ ++
Sbjct: 304 SRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLSAV 363
Query: 390 RSLPRNFQYDVKTILESSTLPIGGAAKRLKDMEQVELNHVNVDISHRTEQDHSIINNTSH 449
+ N +Y+VK ILES +LPIG +AKRLKD+ N V + I NN S
Sbjct: 364 TNFDMN-RYNVKAILESPSLPIGSSAKRLKDVN----NPVPAMM---------ISNNVSE 409
Query: 450 LTEQAIYAATNASNWHALSFQHQQPHHHYNANNMQLQNYPY---------GTQTQKLWCK 500
+A N S W +FQH H + + +Q Q Y T++ ++ K
Sbjct: 410 -------SANNVSGWQNTAFQH---HQGMDLSLLQQQQERYVGYYNGGNLSTESTRVCFK 459
Query: 501 QEQDSDDHSTYTTATDIHQLQLGNNNNNTHNFFGLQNIMSMDSASMDNSSGSNSVVYGGG 560
QE++ H L+ N+ +H + N+ S S D+ + +VV
Sbjct: 460 QEEEQQ-----------HFLR----NSPSH----MTNVDHHSSTSDDSVTVCGNVV---- 496
Query: 561 DHGGYGGNGGYMIPMAIANDGNQNPRSNNNFGESEIKGFGYENVFGTTTDPYHAQAARNL 620
YGG G+ IP + N +P F +EI + Y+AQ
Sbjct: 497 ---SYGGYQGFAIP--VGTSVNYDP-----FTAAEI-------AYNARNHYYYAQ----- 534
Query: 621 YYQPQQLSVDQGSNWVPTAI 640
+ Q QQ+ G ++ P AI
Sbjct: 535 HQQQQQIQQSPGGDF-PVAI 553
>At1g51190 unknown protein
Length = 565
Score = 280 bits (717), Expect = 1e-75
Identities = 219/580 (37%), Positives = 303/580 (51%), Gaps = 108/580 (18%)
Query: 54 TPHHSLNLSHPFSIYEAFHTNNNIHTTQDWKEN-YNNQNLLLGTSCMNQNVNNNNQQAQP 112
+P HS S P I+ + +++ N+ D +N + NQ G + +N + P
Sbjct: 12 SPTHS---SLPPHIHSSQNSHFNLGLVNDNIDNPFQNQ----GWNMINPHGGGGEGGEVP 64
Query: 113 KLENFLGGHSFTDHQEYGGSNSYSSLHLPPHQPEASCGGGDGSTSNNNSIGLSMIKTWLR 172
K+ +FLG DH Y+ +H Q AS NS+ L + T
Sbjct: 65 KVADFLGVSKSGDHHTDHNLVPYNDIH----QTNAS-----DYYFQTNSL-LPTVVTCAS 114
Query: 173 NQPPPPENNNNNNNESGARVQTLSLSMSTGSQSSSSVPLLNANVMSGEISSSENKQPPTT 232
N P NN ES +Q+L+LSM + +++ V A V + +S + TT
Sbjct: 115 NAP-----NNYELQESAHNLQSLTLSMGSTGAAAAEV----ATVKASPAETSADNSSSTT 165
Query: 233 AVVLDSNQTSVVESAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRK 292
+++ ++VE A PR++++TFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQ+RK
Sbjct: 166 ----NTSGGAIVE-ATPRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRK 220
Query: 293 GRQVFVGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLR 352
GRQ GGYDKEEKAARAYDLAALKYWG +TTTNFPI++YEKEVEEMK+MTRQE+VAS+R
Sbjct: 221 GRQ---GGYDKEEKAARAYDLAALKYWGPSTTTNFPITNYEKEVEEMKNMTRQEFVASIR 277
Query: 353 RKSSGFSRGASIYRGVTR-----------------------------QTSSTW*MAS*DW 383
RKSSGFSRGAS+YRGVTR + + + +A+ +
Sbjct: 278 RKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKF 337
Query: 384 KSCRQQRSLPRNFQYDVKTILESSTLPI-GGAAKRLKDMEQVELNHVNVDISHRTEQDHS 442
+ + N +YDVK ILES+TLPI GGAAKRLK+ + +E S R ++
Sbjct: 338 RGLNAVTNFEIN-RYDVKAILESNTLPIGGGAAKRLKEAQALE--------SSRKREEMI 388
Query: 443 IINNTSHLTEQAIYAATNASNW------HALSFQHQQPHHHYNANNMQLQN--------- 487
+ + H A +++ AS+ + LS Q H H++ + LQN
Sbjct: 389 ALGSNFHQYGAASGSSSVASSSRLQLQPYPLSIQQPFEHLHHHQPLLTLQNNNDISQYHD 448
Query: 488 -YPYGTQTQKLWCKQEQDSDDHSTYTTATDIHQLQLGNN----------NNNTHNFFGLQ 536
+ Y QTQ L Q+Q ++ + + + ++ L +N NNNT F G
Sbjct: 449 SFSY-IQTQ-LHLHQQQTNNYLQSSSHTSQLYNAYLQSNPGLLHGFVSDNNNTSGFLG-N 505
Query: 537 NIMSMDSASMDNSSGSN-----SVVYGGGDHGGYGGNGGY 571
N + + S+S SS V Y GG G GG+
Sbjct: 506 NGIGIGSSSTVGSSAEEEFPAVKVDYDMPPSGGATGYGGW 545
>At3g20840 putative transcription factor
Length = 529
Score = 261 bits (666), Expect = 1e-69
Identities = 181/450 (40%), Positives = 239/450 (52%), Gaps = 87/450 (19%)
Query: 179 ENNNNNNN------ESGARVQTLSLSMSTGSQSSSSVPLLNANVMSGEISSSENKQPPTT 232
++N NN+ ES +Q+L+LSM T + N + + S SE TT
Sbjct: 65 DSNTPNNSSYHELQESAHNLQSLTLSMGTTA----------GNNVVDKASPSE-----TT 109
Query: 233 AVVLDSNQTSVVESAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRK 292
+VVE+A PR+++DTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQ+RK
Sbjct: 110 GDNASGGALAVVETATPRRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRK 169
Query: 293 GRQVFVGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLR 352
GRQ GGYDKE+KAAR+YDLAALKYWG +TTTNFPI++YEKEVEEMKHMTRQE+VA++R
Sbjct: 170 GRQ---GGYDKEDKAARSYDLAALKYWGPSTTTNFPITNYEKEVEEMKHMTRQEFVAAIR 226
Query: 353 RKSSGFSRGASIYRGVTR-----------------------------QTSSTW*MAS*DW 383
RKSSGFSRGAS+YRGVTR + + + +A+ +
Sbjct: 227 RKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKF 286
Query: 384 KSCRQQRSLPRNFQYDVKTILESSTLPI-GGAAKRLKDME--------QVELNHVNVDIS 434
+ + N +YDVK ILESSTLPI GGAAKRLK+ + + E+ +
Sbjct: 287 RGLNAVTNFEIN-RYDVKAILESSTLPIGGGAAKRLKEAQALESSRKREAEMIALGSSFQ 345
Query: 435 HRTEQDHSIINNTSHLTEQAIYAATNASNWHALSFQHQQPHHHYNANNMQLQNYPYGTQT 494
+ + +S L Q + LS Q+ HYN NN
Sbjct: 346 YGGGSSTGSGSTSSRLQLQPYPLSIQQPLEPFLSLQNND-ISHYNNNN------------ 392
Query: 495 QKLWCKQEQDSDDHSTYTTATDIHQLQLGNN---NNNTHNFFGLQNIMSMDSASMDNSSG 551
+ S +H +Y T +H Q NN ++ N L N + ++ +
Sbjct: 393 -----AHDSSSFNHHSY-IQTQLHLHQQTNNYLQQQSSQNSQQLYNAYLHSNPALLHGLV 446
Query: 552 SNSVVYGGGDHGGYGGNGGYMIPMAIANDG 581
S S+V ++G G +G Y + N G
Sbjct: 447 STSIVDNNNNNG--GSSGSYNTAAFLGNHG 474
Score = 70.9 bits (172), Expect = 2e-12
Identities = 81/337 (24%), Positives = 144/337 (42%), Gaps = 55/337 (16%)
Query: 246 SAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEE 305
+A+ RKS F + S+YRGVTRH GR++A + G+ + +++G + EE
Sbjct: 223 AAIRRKS-SGFSRGASMYRGVTRHHQHGRWQARI--------GRVAGNKDLYLGTFSTEE 273
Query: 306 KAARAYDLAALKYWGTTTTTNFPISHYE-KEVEEMKHM-----------TRQEYVASLRR 353
+AA AYD+AA+K+ G TNF I+ Y+ K + E + Q +S +R
Sbjct: 274 EAAEAYDIAAIKFRGLNAVTNFEINRYDVKAILESSTLPIGGGAAKRLKEAQALESSRKR 333
Query: 354 KSSGFSRGASIYRGVTRQTSSTW*MAS*DWKSCRQQRSLPRNFQYDVKTILESSTLPIGG 413
++ + G+S G T S S Q + P + Q ++ L
Sbjct: 334 EAEMIALGSSFQYGGGSSTGSG------STSSRLQLQPYPLSIQQPLEPFL--------- 378
Query: 414 AAKRLKDMEQVELNHVNVDISHRTEQDHSIINNTSHL-TEQAIYAATNASNWHALSFQHQ 472
++ +++H N + +H D S N+ S++ T+ ++ TN S Q
Sbjct: 379 ------SLQNNDISHYNNNNAH----DSSSFNHHSYIQTQLHLHQQTNNYLQQQSSQNSQ 428
Query: 473 QPHHHYNANNMQLQNYPYGTQTQKLWCKQEQDSDDHSTYTTATDI--HQLQLGNNN--NN 528
Q ++ Y +N L +G + + + +Y TA + H + +G+++ +
Sbjct: 429 QLYNAYLHSNPALL---HGLVSTSIVDNNNNNGGSSGSYNTAAFLGNHGIGIGSSSTVGS 485
Query: 529 THNFFGLQNIMSMDSA-SMDNSSGSNSVVYGGGDHGG 564
T F ++ M S+ SG S G + GG
Sbjct: 486 TEEFPTVKTDYDMPSSDGTGGYSGWTSESVQGSNPGG 522
>At5g57390 putative protein
Length = 555
Score = 244 bits (624), Expect = 8e-65
Identities = 167/368 (45%), Positives = 196/368 (52%), Gaps = 83/368 (22%)
Query: 10 SLSPQEQHPSTQDQTVASRFGFNPNEISGSDVQGDHCYDLSSHTTPHHSLNLSHPFSIYE 69
SLSP S Q+ S N N S S+ +L+S T+ HH + SH S+++
Sbjct: 17 SLSPSSSSSSHQNWLSFSLSNNNNNFNSSSNP------NLTSSTSDHHHPHPSH-LSLFQ 69
Query: 70 AFHTNNNIHTTQDWKENYNNQNLLLGTSCMNQNVNNNNQQAQPKLENFLGGHSFTDH--- 126
AF T+ Q+ G S + + PKLENFLGG + T
Sbjct: 70 AFSTSP-----------VERQDGSPGVSPSDATAVLSVYPGGPKLENFLGGGASTTTTRP 118
Query: 127 ----QEYGGSNSYSSLHLPPHQPEASCGGGDGSTSNNNSIGLSMIKTWLRNQPPPPENNN 182
Q GG S L P H P A+ + S SI S +
Sbjct: 119 MQQVQSLGGVVFSSDLQPPLHPPSAA----EIYDSELKSIAASFL--------------- 159
Query: 183 NNNNESGARVQTLSLSMSTGSQSSSSVPLLNANVMSGEISSSENKQPPTTAVVLDSNQTS 242
N SG S E+SS +QP AV
Sbjct: 160 --GNYSGGH--------------------------SSEVSSVHKQQPNPLAVS------- 184
Query: 243 VVESAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYD 302
S P+K+V++FGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQ+RKGRQ GGYD
Sbjct: 185 -EASPTPKKNVESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQ---GGYD 240
Query: 303 KEEKAARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGA 362
KE+KAARAYDLAALKYWG TTTTNFPIS+YE E+EEMKHMTRQE+VASLRRKSSGFSRGA
Sbjct: 241 KEDKAARAYDLAALKYWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKSSGFSRGA 300
Query: 363 SIYRGVTR 370
S+YRGVTR
Sbjct: 301 SMYRGVTR 308
>At4g37750 ovule development protein aintegumenta (ANT)
Length = 555
Score = 239 bits (609), Expect = 5e-63
Identities = 148/311 (47%), Positives = 184/311 (58%), Gaps = 46/311 (14%)
Query: 95 GTSCMNQNVN-----NNNQQAQPKLENFLG-GHSFTDHQEYGGSNSYSSLHLPPHQPEAS 148
G+ C+ + +N N++Q + PK+E+F G H+ T H+E + S + H+P
Sbjct: 92 GSLCLMEALNRSSHSNHHQDSSPKVEDFFGTHHNNTSHKEAMDLSLDSLFYNTTHEP--- 148
Query: 149 CGGGDGSTSNNNSIGLSMIKTWLRNQPPPPENNNN----------NNNESGARVQTLSLS 198
+T+ N S +T RN N N N G Q+LSLS
Sbjct: 149 ------NTTTNFQEFFSFPQT--RNHEEETRNYGNDPSLTHGGSFNVGVYGEFQQSLSLS 200
Query: 199 MSTGSQSSSSVPLLNANVMSGEISSSENKQPPTTAVVLDS---------------NQTSV 243
MS GSQSS + + S+N Q + A+V S Q V
Sbjct: 201 MSPGSQSSCITGSHHHQQNQNQNHQSQNHQQISEALVETSVGFETTTMAAAKKKRGQEDV 260
Query: 244 V----ESAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVG 299
V + V RKS+DTFGQRTS YRGVTRHRWTGRYEAHLWDNS ++EG +RKGRQV++G
Sbjct: 261 VVVGQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSFKKEGHSRKGRQVYLG 320
Query: 300 GYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFS 359
GYD EEKAARAYDLAALKYWG +T TNF +Y+KE+E+MK+MTRQEYVA LRRKSSGFS
Sbjct: 321 GYDMEEKAARAYDLAALKYWGPSTHTNFSAENYQKEIEDMKNMTRQEYVAHLRRKSSGFS 380
Query: 360 RGASIYRGVTR 370
RGASIYRGVTR
Sbjct: 381 RGASIYRGVTR 391
Score = 66.2 bits (160), Expect = 5e-11
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 250 RKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAAR 309
R+ F + SIYRGVTRH GR++A + G+ + +++G + +E+AA
Sbjct: 373 RRKSSGFSRGASIYRGVTRHHQHGRWQARI--------GRVAGNKDLYLGTFGTQEEAAE 424
Query: 310 AYDLAALKYWGTTTTTNFPISHYE 333
AYD+AA+K+ GT TNF I+ Y+
Sbjct: 425 AYDVAAIKFRGTNAVTNFDITRYD 448
>At5g10510 ovule development protein - like
Length = 566
Score = 231 bits (590), Expect = 7e-61
Identities = 171/465 (36%), Positives = 226/465 (47%), Gaps = 84/465 (18%)
Query: 104 NNNNQQAQPKLENFLGG---------HSFTDHQEYGGSNSYSSLH-------LPPHQPEA 147
++++Q PKLE+FLG +S TD Q+ + Y H H
Sbjct: 69 SHHSQNHIPKLEDFLGDSSSIVRYSDNSQTDTQDSSLTQIYDPRHHHNQTGFYSDHHDFK 128
Query: 148 SCGGGDGSTSNNNSIGL----SMIKTWLRNQ--PPPPENNNNNNNESGARVQTLSLSMST 201
+ G + S N+ + S+ +T L E++ G LSL ++
Sbjct: 129 TMAGFQSAFSTNSGSEVDDSASIGRTHLAGDYLGHVVESSGPELGFHGGSTGALSLGVNV 188
Query: 202 GSQSSSSVPLLN---ANVMSGEISSSENKQPPTTAVVLDSNQTSVVESAVPRKSV-DTFG 257
+ ++ N N I+++ N T + +V S K + DTFG
Sbjct: 189 NNNTNHRNDNDNHYRGNNNGERINNNNNNDNEKTDSEKEKAVVAVETSDCSNKKIADTFG 248
Query: 258 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALK 317
QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQ RKGRQ GGYDKE+KAARAYDLAALK
Sbjct: 249 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQ---GGYDKEDKAARAYDLAALK 305
Query: 318 YWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTR------- 370
YW T TTNFPI++Y KEVEEMKHMT+QE++ASLRRKSSGFSRGASIYRGVTR
Sbjct: 306 YWNATATTNFPITNYSKEVEEMKHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRW 365
Query: 371 ----------------------QTSSTW*MAS*DWKSCRQQRSLPRNFQYDVKTILESST 408
+ + + +A+ ++ + N +YDV+ I++S+
Sbjct: 366 QARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGINAVTNFEMN-RYDVEAIMKSA- 423
Query: 409 LPIGGAAKRLK------------------DMEQVELNHVNVDISHRTEQDHSIIN----N 446
LPIGGAAKRLK + + + ++ +HS IN
Sbjct: 424 LPIGGAAKRLKLSLEAAASSEQKPILGHHQLHHFQQQQQQQQLQLQSSPNHSSINFALCP 483
Query: 447 TSHLTEQAIYAATNASNWHALSFQHQQPHHHYNANNMQ--LQNYP 489
S + Q I AL HQQ H Q Q++P
Sbjct: 484 NSAVQSQQIIPCGIPFEAAALYHHHQQQQQHQQQQQQQNFFQHFP 528
>At5g65510 putative protein
Length = 437
Score = 229 bits (585), Expect = 3e-60
Identities = 153/414 (36%), Positives = 219/414 (51%), Gaps = 53/414 (12%)
Query: 105 NNNQQAQPKLENFLGGH--SFTDHQ-EYGGSNSYSSLHLPPHQPEASCGGGDGSTSNNNS 161
+++Q PKLE+FLG ++D+Q E S+S + + P H+ A G G S+++
Sbjct: 12 DHSQTQIPKLEDFLGDSFVRYSDNQTETQDSSSLTPFYDPRHRTVAE--GVTGFFSDHHQ 69
Query: 162 IGLSMIKTWLRNQPPPPENNNNNNNESGARVQTLSLSMSTGSQ--------SSSSVPLLN 213
I N P +++ +N G + + + ST ++ ++ V L
Sbjct: 70 PDFKTI-----NSGPEIFDDSTTSNIGGTHLSSHVVESSTTAKLGFNGDCTTTGGVLSLG 124
Query: 214 ANVMSGEISSSENKQPPTTAVVLDSNQTSVVESAVPRKSVDTFGQRTSIYRGVTRHRWTG 273
N S + S N + + + +K V+T GQRTSIYRGVTRHRWTG
Sbjct: 125 VNNTSDQPLSCNNGERGGNSNKKKTVSKKETSDDSKKKIVETLGQRTSIYRGVTRHRWTG 184
Query: 274 RYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYE 333
RYEAHLWDNSCRREGQ RKGRQ GGYDKE++AARAYDLAALKYWG+T TTNFP+S Y
Sbjct: 185 RYEAHLWDNSCRREGQARKGRQ---GGYDKEDRAARAYDLAALKYWGSTATTNFPVSSYS 241
Query: 334 KEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTR----------------------- 370
KE+EEM HMT+QE++ASLRRKSSGFSRGASIYRGVTR
Sbjct: 242 KELEEMNHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLG 301
Query: 371 ------QTSSTW*MAS*DWKSCRQQRSLPRNFQYDVKTILESSTLPIGGAAKRLKDMEQV 424
+ + + +A+ ++ + N +YD++ ++ SS LP+GGAA + + ++
Sbjct: 302 TFATEEEAAEAYDIAAIKFRGINAVTNFEMN-RYDIEAVMNSS-LPVGGAAAKRHKL-KL 358
Query: 425 ELNHVNVDISHRTEQDHSIINNTSHLTEQAIYAATNASNWHALSFQHQQPHHHY 478
L + S Q ++ ++S + ++ + HQ HY
Sbjct: 359 ALESPSSSSSDHNLQQQQLLPSSSPSDQNPNSIPCGIPFEPSVLYYHQNFFQHY 412
>At1g72570 putative AP2 domain transcription factor
Length = 425
Score = 224 bits (571), Expect = 1e-58
Identities = 120/224 (53%), Positives = 151/224 (66%), Gaps = 25/224 (11%)
Query: 164 LSMIKTWLRNQPPP-----------PENNNN----NNNESGARVQ--TLSLSMSTGSQSS 206
+S+ K+WL P +NN +N E+G LSL++S G+ S
Sbjct: 126 VSVFKSWLEQGTPAFPLSSHYVTEEAGTSNNISHFSNEETGYNTNGSMLSLALSHGACSD 185
Query: 207 SSVPLLNANVMSGEISSSENKQPPTTAVVLDSNQTSVVESAVPRKSVDTFGQRTSIYRGV 266
L+N + +S + +V+ V+ +VPRKSVD++GQRTS YRGV
Sbjct: 186 ----LINESNVSARVEEPVKVDEKRKRLVVKPQ----VKESVPRKSVDSYGQRTSQYRGV 237
Query: 267 TRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALKYWGTTTTTN 326
TRHRWTGRYEAHLWDNSC++EGQTR+GRQ +GGYD+EEKAARAYDLAALKYWG TT N
Sbjct: 238 TRHRWTGRYEAHLWDNSCKKEGQTRRGRQAKIGGYDEEEKAARAYDLAALKYWGPTTHLN 297
Query: 327 FPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTR 370
FP+S+YEKE+EE+ +M RQE+VA LRR SSGFSRGAS+YRGVTR
Sbjct: 298 FPLSNYEKEIEELNNMNRQEFVAMLRRNSSGFSRGASVYRGVTR 341
Score = 65.5 bits (158), Expect = 9e-11
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 8/87 (9%)
Query: 247 AVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEK 306
A+ R++ F + S+YRGVTRH GR++A + G+ + +++G + +E+
Sbjct: 320 AMLRRNSSGFSRGASVYRGVTRHHQHGRWQARI--------GRVAGNKDLYLGTFSTQEE 371
Query: 307 AARAYDLAALKYWGTTTTTNFPISHYE 333
AA AYD+AA+K+ G TNF I+ Y+
Sbjct: 372 AAEAYDIAAIKFRGLNAVTNFDINRYD 398
>At1g16060 transcription factor like CKC protein
Length = 345
Score = 171 bits (433), Expect = 1e-42
Identities = 81/137 (59%), Positives = 105/137 (76%), Gaps = 3/137 (2%)
Query: 237 DSNQTSVVESAVPRKSV---DTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKG 293
D + TSVV A ++ D QR+S++RGVTRHRWTGRYEAHLWD + E QT+KG
Sbjct: 30 DQSATSVVLKAKRKRRSQPRDAPPQRSSVHRGVTRHRWTGRYEAHLWDKNSWNETQTKKG 89
Query: 294 RQVFVGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRR 353
RQV++G YD+E+ AARAYDLAALKYWG T NFP+ +YE++++EM+ +++EY+ SLRR
Sbjct: 90 RQVYLGAYDEEDAAARAYDLAALKYWGRDTILNFPLCNYEEDIKEMESQSKEEYIGSLRR 149
Query: 354 KSSGFSRGASIYRGVTR 370
KSSGFSRG S YRGV +
Sbjct: 150 KSSGFSRGVSKYRGVAK 166
Score = 60.5 bits (145), Expect = 3e-09
Identities = 32/85 (37%), Positives = 47/85 (54%), Gaps = 8/85 (9%)
Query: 250 RKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAAR 309
R+ F + S YRGV +H GR+EA + G+ + +++G Y +E+AA
Sbjct: 148 RRKSSGFSRGVSKYRGVAKHHHNGRWEARI--------GRVFGNKYLYLGTYATQEEAAI 199
Query: 310 AYDLAALKYWGTTTTTNFPISHYEK 334
AYD+AA++Y G TNF IS Y K
Sbjct: 200 AYDIAAIEYRGLNAVTNFDISRYLK 224
>At2g41710 AP2 domain transcription factor like protein
Length = 423
Score = 169 bits (429), Expect = 3e-42
Identities = 76/114 (66%), Positives = 96/114 (83%)
Query: 255 TFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLA 314
T G+R+SIYRGVTRHRWTGRYEAHLWD S + Q +KG+QV++G YD EE AARAYDLA
Sbjct: 63 TAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLA 122
Query: 315 ALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGV 368
ALKYWG T NFP++ Y +++EEM++++R+EY+ASLRRKSSGFSRG + YRG+
Sbjct: 123 ALKYWGPGTLINFPVTDYTRDLEEMQNLSREEYLASLRRKSSGFSRGIAKYRGL 176
>At3g54320 aintegumaenta-like protein
Length = 205
Score = 156 bits (394), Expect = 4e-38
Identities = 90/174 (51%), Positives = 109/174 (61%), Gaps = 8/174 (4%)
Query: 197 LSMSTGSQSSSSVPLLNANVMSGEISSSENKQPPTTAVVLDSNQTSVVESAVPRKSVDTF 256
L+ ST S S SS + ++ S I S + P A + S +S P T
Sbjct: 5 LTTSTCSSSPSS-SVSSSTTTSSPIQSEAPR--PKRAKRAKKSSPSGDKSHNPTSPAST- 60
Query: 257 GQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAAL 316
+R+SIYRGVTRHRWTGR+EAHLWD S Q +KG+Q G YD EE AA YDLAAL
Sbjct: 61 -RRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGKQ---GAYDSEEAAAHTYDLAAL 116
Query: 317 KYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTR 370
KYWG T NFP Y KE+EEM+ +T++EY+ASLRR+SSGFSRG S YRGV R
Sbjct: 117 KYWGPDTILNFPAETYTKELEEMQRVTKEEYLASLRRQSSGFSRGVSKYRGVAR 170
Score = 30.0 bits (66), Expect = 4.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 250 RKSVDTFGQRTSIYRGVTRHRWTGRYEAHL 279
R+ F + S YRGV RH GR+EA +
Sbjct: 152 RRQSSGFSRGVSKYRGVARHHHNGRWEARI 181
>At1g79700 hypothetical protein
Length = 308
Score = 149 bits (375), Expect = 6e-36
Identities = 73/113 (64%), Positives = 88/113 (77%), Gaps = 5/113 (4%)
Query: 258 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALK 317
QR+S YRGVTR WTGRYEAHLWD + + QT+KGRQ G YD+EE AARAYDLAALK
Sbjct: 48 QRSSPYRGVTR--WTGRYEAHLWDKNSWNDTQTKKGRQ---GAYDEEEAAARAYDLAALK 102
Query: 318 YWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTR 370
YWG T NFP+ Y+++V+EM+ +++EY+ SLRRKSSGFSRG S YRGV R
Sbjct: 103 YWGRDTLLNFPLPSYDEDVKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVAR 155
Score = 60.5 bits (145), Expect = 3e-09
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 250 RKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAAR 309
R+ F + S YRGV RH GR+EA + G+ + +++G Y +E+AA
Sbjct: 137 RRKSSGFSRGVSKYRGVARHHHNGRWEARI--------GRVFGNKYLYLGTYATQEEAAI 188
Query: 310 AYDLAALKYWGTTTTTNFPISHY 332
AYD+AA++Y G TNF +S Y
Sbjct: 189 AYDIAAIEYRGLNAVTNFDVSRY 211
>At4g36920 APETALA2 protein
Length = 432
Score = 114 bits (284), Expect = 2e-25
Identities = 62/136 (45%), Positives = 88/136 (64%), Gaps = 11/136 (8%)
Query: 242 SVVESAVP-RKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGG 300
+VVE A P +KS R+S YRGVT +R TGR+E+H+WD C G+QV++GG
Sbjct: 110 AVVEPAQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGG 159
Query: 301 YDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSR 360
+D AARAYD AA+K+ G NF I Y+ ++++M ++T++E+V LRR+S+GF R
Sbjct: 160 FDTAHAAARAYDRAAIKFRGVEADINFNIDDYDDDLKQMTNLTKEEFVHVLRRQSTGFPR 219
Query: 361 GASIYRGVTRQTSSTW 376
G+S YRGVT W
Sbjct: 220 GSSKYRGVTLHKCGRW 235
Score = 55.8 bits (133), Expect = 7e-08
Identities = 37/89 (41%), Positives = 51/89 (56%), Gaps = 9/89 (10%)
Query: 248 VPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKA 307
V R+ F + +S YRGVT H+ GR+EA R GQ + V++G +D E +A
Sbjct: 209 VLRRQSTGFPRGSSKYRGVTLHK-CGRWEA--------RMGQFLGKKYVYLGLFDTEVEA 259
Query: 308 ARAYDLAALKYWGTTTTTNFPISHYEKEV 336
ARAYD AA+K G TNF S Y++E+
Sbjct: 260 ARAYDKAAIKCNGKDAVTNFDPSIYDEEL 288
>At2g28550 AP2 transcription factor like protein
Length = 449
Score = 112 bits (279), Expect = 9e-25
Identities = 54/118 (45%), Positives = 82/118 (68%), Gaps = 10/118 (8%)
Query: 259 RTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALKY 318
R+S YRGVT +R TGR+E+H+WD C G+QV++GG+D AARAYD AA+K+
Sbjct: 150 RSSQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTAHAAARAYDRAAIKF 199
Query: 319 WGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRQTSSTW 376
G NF + YE++++++++++++E+V LRR+S+GFSRG+S YRGVT W
Sbjct: 200 RGVDADINFTLGDYEEDMKQVQNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRW 257
Score = 37.4 bits (85), Expect = 0.027
Identities = 30/87 (34%), Positives = 41/87 (46%), Gaps = 24/87 (27%)
Query: 250 RKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAAR 309
R+ F + +S YRGVT H+ GR+EA R GQ F+G +
Sbjct: 233 RRQSTGFSRGSSKYRGVTLHK-CGRWEA--------RMGQ-------FLG--------KK 268
Query: 310 AYDLAALKYWGTTTTTNFPISHYEKEV 336
AYD AA+ G TNF +S Y+ E+
Sbjct: 269 AYDKAAINTNGREAVTNFEMSSYQNEI 295
>At5g67180 floral homeotic protein apetala2-like
Length = 352
Score = 107 bits (268), Expect = 2e-23
Identities = 54/118 (45%), Positives = 78/118 (65%), Gaps = 10/118 (8%)
Query: 259 RTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALKY 318
R+S YRGVT +R TGR+E+H+WD C G+QV++GG+D AARAYD AA+K+
Sbjct: 93 RSSQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTAHAAARAYDRAAIKF 142
Query: 319 WGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRQTSSTW 376
G NF I Y ++++M ++T++E++ LRR+S+GF RG+S YRGVT W
Sbjct: 143 RGVDADINFDIEDYLDDLKQMGNLTKEEFMHVLRRQSTGFPRGSSKYRGVTLHKCGRW 200
Score = 56.6 bits (135), Expect = 4e-08
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 248 VPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKA 307
V R+ F + +S YRGVT H+ GR+E+ L GQ + V++G +D E +A
Sbjct: 174 VLRRQSTGFPRGSSKYRGVTLHK-CGRWESRL--------GQFLNKKYVYLGLFDTEIEA 224
Query: 308 ARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTR 344
ARAYD AA+K G TNF YE+E + TR
Sbjct: 225 ARAYDKAAIKCNGKDAVTNFDPKVYEEEEDLSSETTR 261
>At5g60120 APETALA2 protein - like
Length = 485
Score = 107 bits (268), Expect = 2e-23
Identities = 77/246 (31%), Positives = 119/246 (48%), Gaps = 33/246 (13%)
Query: 131 GSNSYSSLHLPPHQPEASCGGGDGSTSNNNSIGLSMIKTWLRNQPPPPENNNNNNNESGA 190
G + S Q E GGG+ +++ M+ + P + N ++ + +
Sbjct: 52 GEDELCSTRTVKFQFEILKGGGEEEEEDDDERSAVMMT---KEFFPVAKGMNFMDSSAQS 108
Query: 191 RVQTLSLSMSTGSQSSSSVPLLNANVMSGEISSSENKQPPTTAVVLDSNQTSVVESAVPR 250
T+ +S G Q + SG +S QPP+ V +
Sbjct: 109 SRSTVDISFQRGKQGGDFI-----GSGSGGGDASRVMQPPSQPV---------------K 148
Query: 251 KSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARA 310
KS ++S YRGVT +R TGR+E+H+WD C G+QV++GG+D AARA
Sbjct: 149 KSRRGPRSKSSQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTAHAAARA 198
Query: 311 YDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTR 370
YD AA+K+ G NF I YE+++++M +++++E V LRR+SSGFSR S Y+GV
Sbjct: 199 YDRAAVKFRGLEADINFVIGDYEEDLKQMANLSKEEVVQVLRRQSSGFSRNNSRYQGVAL 258
Query: 371 QTSSTW 376
Q W
Sbjct: 259 QKIGGW 264
>At3g54990 APETALA2 - like protein
Length = 247
Score = 102 bits (254), Expect = 7e-22
Identities = 50/113 (44%), Positives = 76/113 (67%), Gaps = 10/113 (8%)
Query: 259 RTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALKY 318
R+S YRGVT +R TGR+E+H+WD C G+QV++GG+D AARAYD AA+K+
Sbjct: 119 RSSQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTAYAAARAYDRAAIKF 168
Query: 319 WGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRQ 371
G NF + Y ++++MK++ + E+V +LRR+S+ F RG+S Y+G+ Q
Sbjct: 169 RGLDADINFVVDDYRHDIDKMKNLNKVEFVQTLRRESASFGRGSSKYKGLALQ 221
>At2g39250 putative AP2 domain transcription factor
Length = 325
Score = 101 bits (251), Expect = 2e-21
Identities = 58/146 (39%), Positives = 90/146 (60%), Gaps = 11/146 (7%)
Query: 222 SSSENKQPPTTAVVLDSNQTSVVESAV-PRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLW 280
S +E P + L S Q + E+ V +KS R+S YRGVT +R TGR+E+H+W
Sbjct: 67 SENELSGPGNEWLDLSSMQRNKQETLVMKKKSRRGPRSRSSHYRGVTFYRRTGRWESHIW 126
Query: 281 DNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKEVEEMK 340
D C G+QV++GG+D AARAYD AA+++ G NF + Y++++E+MK
Sbjct: 127 D--C--------GKQVYLGGFDTAYTAARAYDRAAIRFRGLQADINFIVDDYKQDIEKMK 176
Query: 341 HMTRQEYVASLRRKSSGFSRGASIYR 366
+++++E+V SLRR S+ +RG S Y+
Sbjct: 177 NLSKEEFVQSLRRASASLARGGSKYK 202
>At2g31230 ethylene reponse factor-like AP2 domain transcription
factor
Length = 243
Score = 58.2 bits (139), Expect = 1e-08
Identities = 40/116 (34%), Positives = 65/116 (55%), Gaps = 15/116 (12%)
Query: 263 YRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYDLAALKYWGTT 322
YRGV + W G++ A + D+ TR G +V++G +DK E+AA AYD AA G+
Sbjct: 86 YRGVRKRPW-GKFAAEIRDS-------TRNGIRVWLGTFDKAEEAALAYDQAAFATKGSL 137
Query: 323 TTTNFPISHYEKEVEEMKHMTRQE---YVASLRRKSSGFSRGASIYRGVTRQTSST 375
T NFP+ + +++M+++ + V +L+RK S +R RG R +SS+
Sbjct: 138 ATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHSLRNRP----RGKKRSSSSS 189
>At3g23240 ethylene response factor 1
Length = 218
Score = 57.4 bits (137), Expect = 3e-08
Identities = 49/166 (29%), Positives = 83/166 (49%), Gaps = 19/166 (11%)
Query: 196 SLSMSTGSQSSSSVPLLNANVMSGEISSSENKQPPTTAVVLDSNQTSVVESA---VPRKS 252
S+ S S SSSS +N S + +++++ ++ S Q + ++S +P KS
Sbjct: 18 SIGSSPDSFSSSS-----SNNYSLPFNENDSEEMFLYGLIEQSTQQTYIDSDSQDLPIKS 72
Query: 253 VDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVFVGGYDKEEKAARAYD 312
V + S YRGV R W G++ A + D+ TR G +V++G ++ E+AA AYD
Sbjct: 73 VSSRKSEKS-YRGVRRRPW-GKFAAEIRDS-------TRNGIRVWLGTFESAEEAALAYD 123
Query: 313 LAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQ--EYVASLRRKSS 356
AA G++ NF ++ + E+K+ V +L+RK S
Sbjct: 124 QAAFSMRGSSAILNFSAERVQESLSEIKYTYEDGCSPVVALKRKHS 169
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.313 0.128 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,425,683
Number of Sequences: 26719
Number of extensions: 782610
Number of successful extensions: 4112
Number of sequences better than 10.0: 236
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 3427
Number of HSP's gapped (non-prelim): 551
length of query: 660
length of database: 11,318,596
effective HSP length: 106
effective length of query: 554
effective length of database: 8,486,382
effective search space: 4701455628
effective search space used: 4701455628
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Medicago: description of AC147179.6