BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147179.5 - phase: 0 
         (706 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g03300 unknown protein                                             835  0.0
At5g52690 unknown protein                                              32  1.2
At1g13980 putative pattern formation protein EMB30                     31  2.7
At5g52170 homeodomain transcription factor-like                        30  6.1
At2g02630 hypothetical protein                                         29  7.9
At1g44100 amino acid permease AAP5                                     29  7.9

>At3g03300 unknown protein
          Length = 2042

 Score =  835 bits (2157), Expect = 0.0
 Identities = 409/668 (61%), Positives = 496/668 (74%), Gaps = 12/668 (1%)

Query: 37  NGETVIEPKGTPDSAVWVVQLSDLHLSVHHPNRALDFTNLVGHALSFINPSLVLITGDLT 96
           +G  VIE + T    +WVVQLSDLH SVHHP RA+DF N+VG AL+ INPSLVLITGDLT
Sbjct: 45  SGRRVIEAR-TGQDLIWVVQLSDLHFSVHHPERAIDFKNIVGPALALINPSLVLITGDLT 103

Query: 97  DGKSKDLLTMKQNEDEWVEYRNVMDGVIERSGLHKSLFFDLRGNHDSFGVPVVGGSFDFF 156
           DGKSKD+LTMK NEDEW+EY +VM  V++RSGL+KS+F+DLRGNHD+FGVP VG S DFF
Sbjct: 104 DGKSKDMLTMKLNEDEWLEYESVMQDVVKRSGLNKSIFYDLRGNHDNFGVPSVGSSVDFF 163

Query: 157 SKYSVNGQLGRNRSVNSVTLETKERKHLFVGIDTTMSAGAGLRGPTNVFGHPTDQLLKDL 216
           SKYS+NGQ+GR  +VN++T+ET ERKHLFVGIDTTM  G  LRGPTN+FGHPTD+LL  L
Sbjct: 164 SKYSINGQMGRKGNVNTITVETSERKHLFVGIDTTMHIG--LRGPTNLFGHPTDELLSSL 221

Query: 217 DLELSHWDSQSEKPVTKISFGHFPLSFSAPSSSGRTLKEVFLKHSISAYLCGHLHSRFGK 276
           D  LS WD+QS KPV KISFGHFPLSF+A S S ++LK+VFLKHSISAYLCGHLHSRFGK
Sbjct: 222 DSHLSQWDNQSAKPVAKISFGHFPLSFTALSHSQKSLKDVFLKHSISAYLCGHLHSRFGK 281

Query: 277 NLKRHHQLSNRFLSLQNFFQFNVHQNSFESTVNCSIGA-PPQEFWEWEIGDWRKSRAIRI 335
           NLKRHH      LS  + FQ N+ Q+  EST NCS GA P  EFWEWE+GDWRK+RA+RI
Sbjct: 282 NLKRHHHSGGISLSDNDLFQLNMRQSGAESTSNCSFGALPAAEFWEWEMGDWRKNRAMRI 341

Query: 336 LAIDRGHVSYVDLDFKSGAKHAIILPTFPLDSRFMQTSSWHHNYECQSVASSSYETIRAL 395
           +AIDRGHVSYVDLDFKS  +  IILPTFPLDSRFM TS   H YECQ + SSSY+ IRA+
Sbjct: 342 MAIDRGHVSYVDLDFKSKPQKTIILPTFPLDSRFMSTSFARHKYECQHMISSSYDAIRAI 401

Query: 396 VFSASPVESVVARVYDSRYGDLVLVVEAHMTKRADENSRGN--LYVAPWNYKAFEDTSPD 453
           VFS S V  VVARVYDS  G   LV+EA M K   ++S      +  PWNY+AFED  PD
Sbjct: 402 VFSHSLVVEVVARVYDSSPGFDNLVMEAPMRKHGGDSSSSGATFFSLPWNYRAFEDPLPD 461

Query: 454 RFWFQIESNDIMGRSTLTELRPFSINGHSFRLSWSWKEFFVMGCQWASLYYPLLWSALGF 513
           RFW QIE  DI GR TL+E+RPFSING S ++SW+W EF VMGCQWA+LYYP+LW AL  
Sbjct: 462 RFWLQIEVTDIKGRLTLSEMRPFSINGLSSKVSWTWNEFRVMGCQWAALYYPILWPALYS 521

Query: 514 MFSFLLVPKALLFFQMNLYTYRNFIANKGVVNGALWILQELCRVPTLWFGWIGYLFYLIL 573
           +F   L+PK ++      YT + FIA KG +   LWILQ+LCR+P +WFG++ YLFYLI 
Sbjct: 522 LFLVFLIPKCIIIVFKKQYTLKKFIAKKGPITLVLWILQDLCRMPVVWFGYMAYLFYLIF 581

Query: 574 FPWFMGQVFTEGKSTVYMTYMGWAVETSNGKGKFEWVGFPDIMVLVLPHILFVVLPAILV 633
           FPWF G+VF +     YMT MGW V +S    K E++G PD+MV+V+PH++FVV+P++LV
Sbjct: 582 FPWFSGEVFADSGDRAYMTIMGWVVTSSGADRKHEYIGQPDVMVVVIPHVVFVVIPSVLV 641

Query: 634 TGALTAERAIYRERVLALSGKKKDDIDLNSRRPLLNGNHNSTISTLHLGKRWIRKLLCVV 693
              L AER IY++ +  +SGKK+DD D   ++       +   S L   +R  RK + + 
Sbjct: 642 VCCLVAEREIYKDHIRTVSGKKEDDHDRGRKK------RSQRRSLLFSNRRLFRKSVLLA 695

Query: 694 CLAICWKH 701
            LA+ WKH
Sbjct: 696 SLALYWKH 703


>At5g52690 unknown protein
          Length = 177

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 30/125 (24%), Positives = 62/125 (49%), Gaps = 10/125 (8%)

Query: 59  DLHLSVHHPNRALDFTNLVGHALSFINPSLVLITGDLTDGKSKDLLTMKQNEDEWVEYRN 118
           D+   +H  ++++D  N  G+   +  P    +   LT  K ++++  K N  +    R+
Sbjct: 52  DMGSKLHEKDKSVDIINPNGNRGQYRIPGYTTVYNYLTTPKIQEIVVFKFNVLDEKIKRD 111

Query: 119 VMDGVIERSGLHKSLFFDLRGNHDSFGVPVVGGSFDFFSKYSVNGQLGR-NRSVNSVTLE 177
           VM+ + E SG+      +L+ +H    + V GG    F+K +++ +L R + SV+ +   
Sbjct: 112 VMEVIWEFSGITS---VELKRDHQ---LEVKGGE---FNKVAMSTKLKRIDESVSLIINY 162

Query: 178 TKERK 182
           T+ +K
Sbjct: 163 TRTKK 167


>At1g13980 putative pattern formation protein EMB30
          Length = 1451

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 127 SGLHKSLFFDLRGNHDSFGVPVV---GGSFDF 155
           +GL K+L  D  GNHD F V V+    G+FDF
Sbjct: 606 AGLDKNLVGDFLGNHDEFCVQVLNEFAGTFDF 637


>At5g52170 homeodomain transcription factor-like
          Length = 682

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 16/31 (51%), Positives = 19/31 (60%), Gaps = 4/31 (12%)

Query: 210 DQLLKDLDLELSHWDSQSEKPVTKISFGHFP 240
           D+LLK  +LE S W S+SEK     S  HFP
Sbjct: 230 DELLKLAELETSLWSSKSEKG----SMNHFP 256


>At2g02630 hypothetical protein
          Length = 617

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 13/49 (26%), Positives = 25/49 (50%)

Query: 91  ITGDLTDGKSKDLLTMKQNEDEWVEYRNVMDGVIERSGLHKSLFFDLRG 139
           +  D+ DGK  + +  +  ED+   ++ + DGVI        L+F++ G
Sbjct: 297 LRSDIWDGKELEGVPEEVEEDDVESFKRIADGVILHFSHRHHLYFEISG 345


>At1g44100 amino acid permease AAP5
          Length = 480

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 25/89 (28%), Positives = 41/89 (45%), Gaps = 11/89 (12%)

Query: 474 RPFSINGHSFRLSWSWKEFFVMGCQWASLYYPLLWSALGFMFSFLLVPKALLFFQMNLYT 533
           +PF++N   FRL W  + FFVM     S+  P     +G + +    P   ++F + +Y 
Sbjct: 375 KPFNLN--LFRLVW--RTFFVMTTTLISMLMPFFNDVVGLLGAIGFWP-LTVYFPVEMY- 428

Query: 534 YRNFIANKGVVN-GALWILQELCRVPTLW 561
               IA K V   G  W+  ++  V  L+
Sbjct: 429 ----IAQKNVPRWGTKWVCLQVLSVTCLF 453


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.324    0.138    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,660,923
Number of Sequences: 26719
Number of extensions: 737822
Number of successful extensions: 2138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2129
Number of HSP's gapped (non-prelim): 9
length of query: 706
length of database: 11,318,596
effective HSP length: 106
effective length of query: 600
effective length of database: 8,486,382
effective search space: 5091829200
effective search space used: 5091829200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)