BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147178.12 + phase: 0 
         (163 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g50685 unknown protein                                             212  6e-56
At3g11850 unknown protein (At3g11850)                                  28  1.7
At4g35390 putative protein                                             28  2.2
At3g05220 unknown protein                                              28  2.8
At1g24625 zinc finger protein ZFP7                                     27  6.3
At1g16750 unknown protein                                              27  6.3
At1g11040 DnaJ isolog                                                  27  6.3
At1g01500 unknown protein                                              27  6.3
At2g44790 phytocyanin, blue copper-binding protein II                  26  8.3
At2g37670 putative WD-40 repeat protein                                26  8.3

>At3g50685 unknown protein
          Length = 158

 Score =  212 bits (540), Expect = 6e-56
 Identities = 107/163 (65%), Positives = 127/163 (77%), Gaps = 5/163 (3%)

Query: 1   MLLFSPISTPKTFTNHLNHPLRKPKSHHVRLKLKITNMAKEGSDTNSSPTEIAAIAGGLI 60
           MLL SPIS     + H  + +R+     ++   ++   AK+ +DT     E AAIAG L+
Sbjct: 1   MLLLSPISASLPPSFHRGNLIRRS----IKPLGRVVAKAKDNTDTGGF-LETAAIAGSLV 55

Query: 61  STPVIGWSLYTLKTTGCGLPPGPGGSIGALEGVSYLVVVGIVAWSIYTKTKTGSGLPNGP 120
           STPVIGWSLYTLKTTGCGLPPGP G IGALEGVSYLVVVGIV WS+YTKTKTGSGLPNGP
Sbjct: 56  STPVIGWSLYTLKTTGCGLPPGPAGLIGALEGVSYLVVVGIVGWSLYTKTKTGSGLPNGP 115

Query: 121 FGLLGAVEGLSYLALVAIVVVFGLQYFQQGYIPGPLPADQCFG 163
           FGLLGAVEGLSYL+++AI+VVFG+Q+   G +PGPLP+DQCFG
Sbjct: 116 FGLLGAVEGLSYLSVLAILVVFGIQFLDNGSVPGPLPSDQCFG 158


>At3g11850 unknown protein (At3g11850)
          Length = 504

 Score = 28.5 bits (62), Expect = 1.7
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 21  LRKPKSHHVRLKLKITNMAKEGSDTNSSPTEIAAIAGGLISTPVIGW 67
           +R  K+  V LK    +++KE       P   A+IAG L  TPV  W
Sbjct: 410 MRTEKAQMVLLKEIAQHLSKEVVPQRRLPLRKASIAGPLTFTPVFKW 456


>At4g35390 putative protein
          Length = 270

 Score = 28.1 bits (61), Expect = 2.2
 Identities = 31/89 (34%), Positives = 39/89 (42%), Gaps = 15/89 (16%)

Query: 42  GSDTNSSPTEIAAIAGGLISTPVIGWSLYTLKTTGCGLPP----GPGGSIGALEGVSYLV 97
           G+ TN +  + AA AGG + T  +      L  TG  LPP    G GG    L G    V
Sbjct: 96  GAVTNVTIRQPAAPAGGGVIT--LHGRFDILSLTGTALPPPAPPGAGGLTVYLAGGQGQV 153

Query: 98  VVGIVAWSIYTKTKTGSGLPNGPFGLLGA 126
           V G VA         GS + +GP  L+ A
Sbjct: 154 VGGNVA---------GSLIASGPVVLMAA 173


>At3g05220 unknown protein
          Length = 541

 Score = 27.7 bits (60), Expect = 2.8
 Identities = 27/85 (31%), Positives = 35/85 (40%), Gaps = 16/85 (18%)

Query: 76  GCGLPPGPGGSIGALEGVSYLVVVGIVAWSIYTKTKTGSGLPNGPFGLLGAVEGLSYLAL 135
           G G P GPGG +G    +  +   G         +  G G P GP G     +G SY A+
Sbjct: 391 GPGGPMGPGGPMGQGGPMGMMGPGG-------PMSMMGPGGPMGPMG----GQGGSYPAV 439

Query: 136 VAIVVVFGLQYFQQGYIPGPLPADQ 160
             + +  G      GY PGP  A Q
Sbjct: 440 QGLPMSGG-----GGYYPGPPQASQ 459


>At1g24625 zinc finger protein ZFP7
          Length = 209

 Score = 26.6 bits (57), Expect = 6.3
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 18 NHPLRKPKSHHVRLKLKITNMAKEGSDTNSSPTE 51
          N  L KP+S+HV L LK+ +   +  DT S+  E
Sbjct: 22 NQDLSKPESNHVSLDLKLNDTFND--DTKSTKCE 53


>At1g16750 unknown protein
          Length = 529

 Score = 26.6 bits (57), Expect = 6.3
 Identities = 22/89 (24%), Positives = 43/89 (47%), Gaps = 4/89 (4%)

Query: 8   STPKTFTNHLNHPLRKPKSHHVR--LKLKITNMAKEGSDTNSSPTEIAAIAGGLISTPVI 65
           +T +  T  ++ PL +P+   +   LKLK+++  ++   +   P    A++ G+ S+P +
Sbjct: 368 ATIEYMTLKMSPPLHRPQIALLLSILKLKVSDEQRQAGISTPEPLVSFALSCGMHSSPAV 427

Query: 66  GWSLYTLKTTGCGLPPGPGGSIGALEGVS 94
              +Y+ +  G  L       I A  GVS
Sbjct: 428 --RIYSAENVGEELEEAQKDYIQASVGVS 454


>At1g11040 DnaJ isolog
          Length = 438

 Score = 26.6 bits (57), Expect = 6.3
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 75  TGCGLPPGPGGSIGALEGVSYLVVVGIVAWSIYTKTKTGSGLPN 118
           TGC L      S+  L G S  + VG V +  + K   G G+PN
Sbjct: 361 TGCKL------SVPLLSGESMSITVGDVIFHGFEKAIKGQGMPN 398


>At1g01500 unknown protein
          Length = 327

 Score = 26.6 bits (57), Expect = 6.3
 Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 27/94 (28%)

Query: 21  LRKPKSHHVRLKLKITNMAKEGSDTNSSPTEIAAIAG----------------------- 57
           +R P S    LKL+   + +E S+     TE   + G                       
Sbjct: 82  VRVPSSQTASLKLRRDRVDRESSEVTYVSTETVRVTGCVDFEVYDNEDMVLCGNLDRIEG 141

Query: 58  ----GLISTPVIGWSLYTLKTTGCGLPPGPGGSI 87
               G +S P  GW +      G G   GP  S+
Sbjct: 142 AWNNGTVSDPKTGWGMDCYIAMGNGHVSGPSASV 175


>At2g44790 phytocyanin, blue copper-binding protein II
          Length = 202

 Score = 26.2 bits (56), Expect = 8.3
 Identities = 21/61 (34%), Positives = 27/61 (43%), Gaps = 9/61 (14%)

Query: 43  SDTNSSPTEIAAIAGGLISTPVIGWSLYTLKTTGCGL--PPGPGGSIGALEGVSYLVVVG 100
           S T  +PT   +   G   TP       T  T G G   PP P  + GA +GV   V+VG
Sbjct: 139 SSTPGTPTTPESPPSGGSPTP-------TTPTPGAGSTSPPPPPKASGASKGVMSYVLVG 191

Query: 101 I 101
           +
Sbjct: 192 V 192


>At2g37670 putative WD-40 repeat protein
          Length = 903

 Score = 26.2 bits (56), Expect = 8.3
 Identities = 12/31 (38%), Positives = 18/31 (57%), Gaps = 1/31 (3%)

Query: 64  VIGWS-LYTLKTTGCGLPPGPGGSIGALEGV 93
           V+ WS L+ + T  C  P G G  IG+ +G+
Sbjct: 581 VVEWSDLHEMVTAACYTPDGQGALIGSHKGI 611


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.318    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,194,648
Number of Sequences: 26719
Number of extensions: 191471
Number of successful extensions: 397
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 10
length of query: 163
length of database: 11,318,596
effective HSP length: 92
effective length of query: 71
effective length of database: 8,860,448
effective search space: 629091808
effective search space used: 629091808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)