BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147178.1 - phase: 0
(79 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36720 putative protein 92 4e-20
At5g62490 AtHVA22b-like protein 28 0.63
At1g69700 AtHVA22c 27 2.4
At3g54950 putative protein 26 4.1
At2g28170 hypothetical protein 26 4.1
At3g29730 hypothetical protein 25 6.9
At2g12300 pseudogene 25 6.9
At2g06800 putative PttA-like transposon protein 25 6.9
At1g74520 AtHVA22a 25 6.9
At1g50850 hypothetical protein 25 6.9
At1g36460 hypothetical protein 25 6.9
At5g50720 unknown protein 25 9.0
>At4g36720 putative protein
Length = 227
Score = 92.4 bits (228), Expect = 4e-20
Identities = 40/64 (62%), Positives = 54/64 (83%)
Query: 2 ALPLIGSNIASEVGLRLLLCPLGSHVVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRCL 61
++ L+GS + EVGLR+L PL S++V+RTACCS+GIGLPVYSTFKAIES +++ QQ+ L
Sbjct: 10 SMALLGSGLTGEVGLRVLFSPLSSNIVLRTACCSIGIGLPVYSTFKAIESGDENEQQKML 69
Query: 62 VYWA 65
+YWA
Sbjct: 70 IYWA 73
>At5g62490 AtHVA22b-like protein
Length = 167
Score = 28.5 bits (62), Expect = 0.63
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 36 VGIGLPVYSTFKAIESKNQDAQQRCLVYWA 65
+ + P+Y++ +AIES++ ++ L YWA
Sbjct: 24 ISLVYPLYASVRAIESRSHGDDKQWLTYWA 53
>At1g69700 AtHVA22c
Length = 184
Score = 26.6 bits (57), Expect = 2.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 41 PVYSTFKAIESKNQDAQQRCLVYW 64
P+Y++ KAIE+++ ++ L YW
Sbjct: 31 PLYASVKAIETRSLPEDEQWLTYW 54
>At3g54950 putative protein
Length = 488
Score = 25.8 bits (55), Expect = 4.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 46 FKAIESKNQDAQQRCLVYWAGLNFINP 72
F+ +E K+ D Q +C+ GL NP
Sbjct: 270 FEPVEMKSVDGQTKCVAVGGGLAMSNP 296
>At2g28170 hypothetical protein
Length = 617
Score = 25.8 bits (55), Expect = 4.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 22 PLGSHVVIRTACCSVGIGLPVYST 45
PLGS ++ R C +VG+ LP++ +
Sbjct: 142 PLGSALIQRFECFNVGVLLPLFGS 165
>At3g29730 hypothetical protein
Length = 517
Score = 25.0 bits (53), Expect = 6.9
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 40 LPVYSTFKAIESKNQDAQQR 59
LP STFKA+E + Q+AQ++
Sbjct: 424 LPGDSTFKALEERLQEAQRQ 443
>At2g12300 pseudogene
Length = 307
Score = 25.0 bits (53), Expect = 6.9
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 40 LPVYSTFKAIESKNQDAQQR 59
LP STFKA+E + Q+AQ++
Sbjct: 265 LPGDSTFKALEERLQEAQRQ 284
>At2g06800 putative PttA-like transposon protein
Length = 451
Score = 25.0 bits (53), Expect = 6.9
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 40 LPVYSTFKAIESKNQDAQQR 59
LP STFKA+E + Q+AQ++
Sbjct: 358 LPGDSTFKALEERLQEAQRQ 377
>At1g74520 AtHVA22a
Length = 177
Score = 25.0 bits (53), Expect = 6.9
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 36 VGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
V + P+Y++ +AIE+++ ++ L YW
Sbjct: 24 VSLVYPLYASVQAIETQSHADDKQWLTYW 52
>At1g50850 hypothetical protein
Length = 438
Score = 25.0 bits (53), Expect = 6.9
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 40 LPVYSTFKAIESKNQDAQQR 59
LP STFKA+E + Q+AQ++
Sbjct: 416 LPGDSTFKALEERLQEAQRQ 435
>At1g36460 hypothetical protein
Length = 492
Score = 25.0 bits (53), Expect = 6.9
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 40 LPVYSTFKAIESKNQDAQQR 59
LP STFKA+E + Q+AQ++
Sbjct: 399 LPGDSTFKALEERLQEAQRQ 418
>At5g50720 unknown protein
Length = 116
Score = 24.6 bits (52), Expect = 9.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 41 PVYSTFKAIESKNQDAQQRCLVYWAGLNFI 70
P+Y++ AIES ++ ++ L YW +F+
Sbjct: 24 PLYASVIAIESPSKVDDEQWLAYWILYSFL 53
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.325 0.141 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,692,111
Number of Sequences: 26719
Number of extensions: 56426
Number of successful extensions: 132
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119
Number of HSP's gapped (non-prelim): 13
length of query: 79
length of database: 11,318,596
effective HSP length: 55
effective length of query: 24
effective length of database: 9,849,051
effective search space: 236377224
effective search space used: 236377224
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)
Medicago: description of AC147178.1