BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147014.6 + phase: 0 
         (211 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g18030 HAL3A protein                                               229  8e-61
At1g48605 regulatory protein HAL3B                                    226  9e-60
At1g52930 unknown protein                                              29  2.1
At5g16520 unknown protein                                              28  3.5
At3g19420 putative tyrosine phosphatase                                28  4.6
At4g24230 unknown protein                                              27  6.0
At1g60020 hypothetical protein                                         27  6.0
At1g74600 hypothetical protein                                         27  7.9

>At3g18030 HAL3A protein
          Length = 209

 Score =  229 bits (584), Expect = 8e-61
 Identities = 106/182 (58%), Positives = 142/182 (77%), Gaps = 3/182 (1%)

Query: 19  RKPRIVIGACGSVAAMKFGLVLRAFMEWAEVHAIVTKPSCHFISEASIPKGVIVFSDEHE 78
           RKPR+++ A GSVAA+KFG +   F EWAEV A+VTK S HF+ + S+P+ V +++DE E
Sbjct: 18  RKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLPQEVTLYTDEDE 77

Query: 79  WQAWKQLGDTAAHIKLANWADILLIAPLSAHTLAKIGGGLCDNLLTSIVRSWNYKKPMFV 138
           W +W ++GD   HI+L  WAD+L+IAPLSA+TL KI GGLCDNLLT I+R+W+Y KP+FV
Sbjct: 78  WSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLFV 137

Query: 139 APSMNDAMWRNPLTEKHLKRINELGITLIPPHES--SDGEYTNTGSMADPSKIYSTVRVF 196
           AP+MN  MW NP TE+HL  ++ELGITLIPP +   + G+Y N G+MA+PS IYSTVR+F
Sbjct: 138 APAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLACGDYGN-GAMAEPSLIYSTVRLF 196

Query: 197 YD 198
           ++
Sbjct: 197 WE 198


>At1g48605 regulatory protein HAL3B
          Length = 201

 Score =  226 bits (575), Expect = 9e-60
 Identities = 105/191 (54%), Positives = 145/191 (74%), Gaps = 3/191 (1%)

Query: 19  RKPRIVIGACGSVAAMKFGLVLRAFMEWAEVHAIVTKPSCHFISEASIPKGVIVFSDEHE 78
           RKPRI++ A GSVA++KF  +   F EWAEV A+ +K S +F+ + S+P+ V +++DE E
Sbjct: 10  RKPRILLAASGSVASIKFSNLCHCFSEWAEVKAVASKSSLNFVDKPSLPQNVTLYTDEDE 69

Query: 79  WQAWKQLGDTAAHIKLANWADILLIAPLSAHTLAKIGGGLCDNLLTSIVRSWNYKKPMFV 138
           W +W ++GD   HI+L  WAD+++IAPLSA+TLAKI GGLCDNLLT IVR+W+Y KP+FV
Sbjct: 70  WSSWNKIGDPVLHIELRRWADVMIIAPLSANTLAKIAGGLCDNLLTCIVRAWDYSKPLFV 129

Query: 139 APSMNDAMWRNPLTEKHLKRINELGITLIPP--HESSDGEYTNTGSMADPSKIYSTVRVF 196
           AP+MN  MW NP TE+HL  ++ELGITLIPP   + + G+Y N G+MA+PS IYSTVR+F
Sbjct: 130 APAMNTLMWNNPFTERHLVLLDELGITLIPPIKKKLACGDYGN-GAMAEPSLIYSTVRLF 188

Query: 197 YDYNILKKKPG 207
           ++    K++ G
Sbjct: 189 WESQARKQRDG 199


>At1g52930 unknown protein
          Length = 320

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 12/96 (12%)

Query: 70  VIVFS--DEHEWQAWKQLGDTAAHIKLANWADILLIAPLSAHTLAKIGGGLCDNLLTSIV 127
           V VFS  DEH W    Q+  +  H    N +D +    L   TL ++G   C N +    
Sbjct: 203 VFVFSIVDEHIWFRNYQI--SVPH----NESDKIAKGGLDKMTLIEVGPRFCLNPIKIFA 256

Query: 128 RSWN----YKKPMFVAPSMNDAMWRNPLTEKHLKRI 159
            S+     Y+ P++V+P+   A+ +     K  K+I
Sbjct: 257 GSFGGPTLYENPLYVSPNQIRALEKRNKAGKFAKKI 292


>At5g16520 unknown protein
          Length = 608

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 168 PPHESSDGEYTNTGSMADPSKIYSTVRVFYDYNILKKK 205
           PP E  DG   ++GS  D   I +  ++ YDYN+L ++
Sbjct: 546 PPMEFIDG---SSGSEVDAMDIKNKFQLLYDYNVLLRE 580


>At3g19420 putative tyrosine phosphatase
          Length = 611

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 21/79 (26%), Positives = 31/79 (38%), Gaps = 2/79 (2%)

Query: 117 GLCDNLLTSIVRSW--NYKKPMFVAPSMNDAMWRNPLTEKHLKRINELGITLIPPHESSD 174
           G+   L  + + +W  N K P   A + ND+   N       K  + LGI L P    ++
Sbjct: 39  GVASKLSAAGISNWAKNLKVPQPFASTQNDSGVENTEKSAFAKFTSGLGIRLSPKSPQTN 98

Query: 175 GEYTNTGSMADPSKIYSTV 193
              T   S A  S    T+
Sbjct: 99  DTTTEGTSSATESSFIGTI 117


>At4g24230 unknown protein
          Length = 364

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 42  AFMEWAEVHAIVTKPSCHFISEASIPKGVIVFSDEHEWQAWKQLGD 87
           A ME   +H I T+ SC    EA  P  V++ S   +W AW++LG+
Sbjct: 255 AKMELFGLHKIATEGSCR---EAQ-PMAVMI-SARAKWNAWQKLGN 295


>At1g60020 hypothetical protein
          Length = 1194

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 12/37 (32%), Positives = 19/37 (50%)

Query: 133 KKPMFVAPSMNDAMWRNPLTEKHLKRINELGITLIPP 169
           K P  VA ++ D  WRN ++E+    +      L+PP
Sbjct: 897 KIPTTVAEALRDPNWRNAMSEEFNAGLRNSTYDLVPP 933


>At1g74600 hypothetical protein
          Length = 895

 Score = 26.9 bits (58), Expect = 7.9
 Identities = 9/17 (52%), Positives = 15/17 (87%)

Query: 177 YTNTGSMADPSKIYSTV 193
           Y+N+GSMAD +K++ T+
Sbjct: 94  YSNSGSMADAAKLFDTI 110


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.320    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,992,015
Number of Sequences: 26719
Number of extensions: 201090
Number of successful extensions: 454
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 447
Number of HSP's gapped (non-prelim): 10
length of query: 211
length of database: 11,318,596
effective HSP length: 95
effective length of query: 116
effective length of database: 8,780,291
effective search space: 1018513756
effective search space used: 1018513756
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)