BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147012.5 + phase: 0 
         (789 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g33390 RNA helicase, putative                                      683  0.0
At1g32490 putative RNA helicase (At1g32490)                           189  5e-48
At2g35340 putative pre-mRNA splicing factor RNA helicase              181  2e-45
At3g26560 ATP-dependent RNA helicase, putative                        170  3e-42
At5g13010 pre-mRNA splicing factor ATP-dependent RNA helicase -l...   165  1e-40
At4g16680 RNA helicase                                                164  2e-40
At1g27900 ATP-dependent RNA helicase (At1g27900)                      151  1e-36
At3g62310 ATP-dependent RNA helicase-like protein                     151  2e-36
At2g47250 putative pre-mRNA splicing factor RNA helicase              149  5e-36
At2g35920 ATP-dependent RNA helicase A like protein                   146  5e-35
At1g06670 DEIH-box RNA/DNA helicase                                   133  3e-31
At1g48650 hypothetical protein                                        130  3e-30
At2g01130 ATP-dependent RNA like helicase A                           125  7e-29
At1g26370 hypothetical protein                                        123  5e-28
At4g18465 RNA helicase - like protein                                 118  1e-26
At5g10370 putative protein                                            117  2e-26
At4g01020 unknown protein                                             115  7e-26
At1g58050 hypothetical protein                                        107  2e-23
At2g47680 putative ATP-dependent RNA helicase A                        81  3e-15
At1g58060 hypothetical protein                                         59  1e-08

>At1g33390 RNA helicase, putative
          Length = 1237

 Score =  683 bits (1762), Expect = 0.0
 Identities = 382/765 (49%), Positives = 489/765 (62%), Gaps = 77/765 (10%)

Query: 17   ETSSVEGININEINEAFEMPGSSSMQQTDRFSGYDED-----DNNFDEN--ESDSYDSET 69
            +  S  G+++ EI EAF+     S  Q  RFS + ED     D N+D++  E D Y+S+ 
Sbjct: 526  DDGSFGGVDMKEIAEAFD---DDSNNQNSRFSSHGEDPSDIGDGNYDDDFEEEDMYESDE 582

Query: 70   ESELEFNDDDKNNHEGSKNNNNIVDVLGNEGSLASLKAAFENLSGQATLSSSNVNTEDSL 129
            + + E  DD                    EG L +L+AAF  L+ +    + +V+ E + 
Sbjct: 583  DRDWETVDD------------GFASSFVEEGKLDALRAAFNALADK----NGSVSAEPA- 625

Query: 130  DQSKVGREKIARENHDS-------SPGALFVLPLYAMLPAAAQLRVFDGVKEGERLVVVA 182
                   + IA EN ++       SPG L VLPLYAML  AAQLRVF+ V++ ERLVVVA
Sbjct: 626  -------KSIAAENQEAEQVKNKFSPGKLRVLPLYAMLSPAAQLRVFEEVEKEERLVVVA 678

Query: 183  TNVAETSLTIPGIKYVVDTGREKVKNYDSSNGMETYEVKWISKASAAQRAGRAGRTAAGH 242
            TNVAETSLTIPGIKYVVDTGR KVKNYDS  GME+YEV WIS+ASA+QRAGRAGRT  GH
Sbjct: 679  TNVAETSLTIPGIKYVVDTGRVKVKNYDSKTGMESYEVDWISQASASQRAGRAGRTGPGH 738

Query: 243  CYRLYSSAAFSNEFPEFSPAEVEKVPVHGVVLLLKSMQIKKVANFPFPTSLKAASLLEAE 302
            CYRLYSSA FSN F E S  E+ KVPV GV+LL+KSM I KV NFPFPT  + +++ EAE
Sbjct: 739  CYRLYSSAVFSNIFEESSLPEIMKVPVDGVILLMKSMNIPKVENFPFPTPPEPSAIREAE 798

Query: 303  NCLRALEALDSKDELTLLGKAMALYPLSPRHSRMILTVIKNTR-YKHIRNSSLLLAYAVA 361
             CL+ALEALDS   LT LGKAM+ YP+SPRHSRM+LTVI+  +  ++   ++L+L YAVA
Sbjct: 799  RCLKALEALDSNGGLTPLGKAMSHYPMSPRHSRMLLTVIQMLKETRNYSRANLILGYAVA 858

Query: 362  AAAALSLPNPFVMQYEGNDSNKDSETSEKSRMGDNENNIDKTEKTKRKKLKQTSKVAREK 421
            A AALSLPNP +M++EG   N+           D +  + + +K ++K  K+  K AR++
Sbjct: 859  AVAALSLPNPLIMEFEGEKKNESK---------DADKTVKQEDKQRKKDRKEKIKAARDR 909

Query: 422  FRIVSSDALAIAYALQCFEHSQNSVQFCEDNALHFKTMDEMSKLRQQLLRLVFFQNDKGG 481
            F   SSDAL +AYAL  FE S+N + FCE N LH KTMDEMSKL+ QLLRLVF       
Sbjct: 910  FSNPSSDALTVAYALHSFEVSENGMGFCEANGLHLKTMDEMSKLKDQLLRLVFNCCKPSE 969

Query: 482  LEQEYSWTHVTLEDVEHVWRV---SSAHYPLPLVEERLICRAICAGWADRVAKRIPISKA 538
             E  +SWTH T++DVE  WR+   +S+  PL   EE L+  AICAGWADRVA++      
Sbjct: 970  TEDSFSWTHGTIQDVEKSWRITTSTSSKTPLLQNEEELLGEAICAGWADRVARK------ 1023

Query: 539  VDGETISRAGRYQSCMVDESIFIHRWSSVSTVHPEFLVYNELLETKRPNKEGETSAKRAY 598
                  +RA  YQ+C V E +F+HRWSS+    PE LVY+ELL T RP           Y
Sbjct: 1024 ------TRATEYQACAVQEPVFLHRWSSLINSAPELLVYSELLLTNRP-----------Y 1066

Query: 599  MHGVTNVDPTWLVENAKSSCIFSPPLTDPRPFYDAQADQVKCWVIPTFGRFCWELPKHSI 658
            MHG T V P WLV++AKS C+FS PL DP+P+Y ++ D+V CWV+P+FG   WELP HS+
Sbjct: 1067 MHGATRVRPEWLVKHAKSLCVFSAPLKDPKPYYSSEEDRVLCWVVPSFGPHNWELPAHSV 1126

Query: 659  PISNVEHRVQVFAYALLEGQVCTCLKSVRKYMSAPPETILRREALGQKRVGNLISKLNSR 718
             I+    R   F  ALL+G+V TCLKS R  ++  PET+L REA G +RVG+L+  L  +
Sbjct: 1127 AITEDRDRAAAFGCALLQGEVLTCLKSFRALLAGKPETLLEREAWGLERVGSLVMVLTEK 1186

Query: 719  LIDSSAMLRIVWKQNPRELFSEILDWFQQGFRKHFEELWLQMLGE 763
             ID+   LR  W+QNP  L+SEI  WFQ+ FR   ++LW  ML E
Sbjct: 1187 KIDTLESLRKNWEQNPNVLYSEIEVWFQKKFRHRVKDLWQTMLKE 1231


>At1g32490 putative RNA helicase (At1g32490)
          Length = 1044

 Score =  189 bits (480), Expect = 5e-48
 Identities = 143/464 (30%), Positives = 223/464 (47%), Gaps = 91/464 (19%)

Query: 151  LFVLPLYAMLPAAAQLRVFDGVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYD 210
            L + P+YA LP+  Q ++F+   EG R VV+ATN+AETSLTI GIKYVVD G  K+K+Y+
Sbjct: 646  LIICPIYANLPSELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYN 705

Query: 211  SSNGMETYEVKWISKASAAQRAGRAGRTAAGHCYRLYSSAAFSNEFPEFSPAEVEKVPVH 270
               GME+  +  ISKASA QRAGRAGRT+ G CYRLY++  ++N+  E +  EV++  + 
Sbjct: 706  PRTGMESLLITPISKASATQRAGRAGRTSPGKCYRLYTAFNYNNDLEENTVPEVQRTNLA 765

Query: 271  GVVLLLKSMQIKKVANFPFPTSLKAASLLEAENCLRALEALDSKDELTLLGKAMALYPLS 330
             VVL LKS+ I  + NF F     A +L+++   L AL AL+   ELT  G+ MA +PL 
Sbjct: 766  SVVLALKSLGIHDLINFDFMDPPPAEALVKSLELLFALGALNKLGELTKAGRRMAEFPLD 825

Query: 331  PRHSRMILTVIKNTRYKHIRNSSLLLAYAVAAAAALSLPNPFVMQYEGNDSNKDSETSEK 390
            P  S+MI   + + +YK            ++ AA LS+      + +    + D+     
Sbjct: 826  PMLSKMI---VVSDKYK-------CSDEIISIAAMLSIGGSIFYRPKDKQVHADN----- 870

Query: 391  SRMGDNENNIDKTEKTKRKKLKQTSKVAREKFRIVSSDALAIAYALQCFEHSQNSVQFCE 450
            +RM  +  N+                           D +A+      ++ +  S Q+C 
Sbjct: 871  ARMNFHTGNV--------------------------GDHIALLKVYSSWKETNFSTQWCY 904

Query: 451  DNALHFKTMDEMSKLRQQLLRLVFFQNDKGGLEQEYSWTHVTLEDVEHVWRVSSAHYPLP 510
            +N +  ++M     +R QL         +G LE+        L +++ V           
Sbjct: 905  ENYIQVRSMKRARDIRDQL---------EGLLERVEIDISSNLNELDSV----------- 944

Query: 511  LVEERLICRAICAGWADRVAKRIPISKAVDGETISRAGRYQSCMVDESIFIHRWSSVSTV 570
                    ++I AG+    AK            + + G Y++    +++ IH  S +S V
Sbjct: 945  -------RKSIVAGFFPHTAK------------LQKNGSYRTVKHPQTVHIHPNSGLSQV 985

Query: 571  HPEFLVYNELLETKRPNKEGETSAKRAYMHGVTNVDPTWLVENA 614
             P ++VY+EL+ T            + YM  VT + P WL+E A
Sbjct: 986  LPRWVVYHELVLT-----------SKEYMRQVTELKPEWLIELA 1018


>At2g35340 putative pre-mRNA splicing factor RNA helicase
          Length = 1087

 Score =  181 bits (458), Expect = 2e-45
 Identities = 145/465 (31%), Positives = 220/465 (47%), Gaps = 93/465 (20%)

Query: 151  LFVLPLYAMLPAAAQLRVFDGVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYD 210
            L + P+YA LP+  Q ++F+   EG R VV+ATN+AETSLTI GIKYVVD G  K+K+Y+
Sbjct: 689  LIICPIYANLPSELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYN 748

Query: 211  SSNGMETYEVKWISKASAAQRAGRAGRTAAGHCYRLYSSAAFSNEFPEFSPAEVEKVPVH 270
               GME+  V  ISKASA QR GRAGRT+ G CYRLY++  + N+  + +  E+++  + 
Sbjct: 749  PRTGMESLLVTPISKASATQRTGRAGRTSPGKCYRLYTAFNYYNDLEDNTVPEIQRTNLA 808

Query: 271  GVVLLLKSMQIKKVANFPFPTSLKAASLLEAENCLRALEALDSKDELTLLGKAMALYPLS 330
             VVL LKS+ I  + NF F     + +L+++   L AL AL+   ELT  G+ MA +PL 
Sbjct: 809  SVVLSLKSLGIHNLLNFDFMDPPPSEALIKSLELLFALGALNQLGELTKAGRRMAEFPLD 868

Query: 331  PRHSRMILTVIKNTRYKHIRNSSLLLAYAVAAAAALSL-PNPFVMQYEGNDSNKDSETSE 389
            P  S+MI   + + +YK            ++ AA LS+ P+ F   Y   D    ++ + 
Sbjct: 869  PMLSKMI---VVSDKYK-------CSDEIISIAAMLSIGPSIF---YRPKDKQVHADNAM 915

Query: 390  KSRMGDNENNIDKTEKTKRKKLKQTSKVAREKFRIVSSDALAIAYALQCFEHSQNSVQFC 449
            K+    N                               D +A       ++ +  S Q+C
Sbjct: 916  KNFHVGN-----------------------------VGDHIAFLKIYNSWKETNYSTQWC 946

Query: 450  EDNALHFKTMDEMSKLRQQLLRLVFFQNDKGGLEQEYSWTHVTLEDVEHVWRVSSAHYPL 509
             +N +  ++M     +R QL  L                    LE VE    VSS    L
Sbjct: 947  YENYIQVRSMKRARDIRDQLEGL--------------------LERVE--IDVSSNANEL 984

Query: 510  PLVEERLICRAICAGWADRVAKRIPISKAVDGETISRAGRYQSCMVDESIFIHRWSSVST 569
              +      ++I AG+    AK            + + G Y++    +++ IH  S +S 
Sbjct: 985  DSIR-----KSIVAGFFPHTAK------------LQKNGSYRTVKHPQTVHIHPASGLSQ 1027

Query: 570  VHPEFLVYNELLETKRPNKEGETSAKRAYMHGVTNVDPTWLVENA 614
            V P ++VY++L+ T            + YM  VT + P WL+E A
Sbjct: 1028 VLPRWVVYHQLVLT-----------SKEYMRQVTELKPEWLIEIA 1061


>At3g26560 ATP-dependent RNA helicase, putative
          Length = 1168

 Score =  170 bits (430), Expect = 3e-42
 Identities = 135/464 (29%), Positives = 213/464 (45%), Gaps = 93/464 (20%)

Query: 151  LFVLPLYAMLPAAAQLRVFDGVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYD 210
            L +LP+Y+ LP+  Q R+FD    G+R VVVATN+AE SLTI GI YVVD G  K   Y+
Sbjct: 757  LIILPVYSALPSEMQSRIFDPPPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYN 816

Query: 211  SSNGMETYEVKWISKASAAQRAGRAGRTAAGHCYRLYSSAAFSNEFPEFSPAEVEKVPVH 270
               G+E+  +  IS+ASA QRAGRAGRT  G CYRLY+ +A+ NE P  S  E++++ + 
Sbjct: 817  PKQGLESLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMPPTSIPEIQRINLG 876

Query: 271  GVVLLLKSMQIKKVANFPFPTSLKAASLLEAENCLRALEALDSKDELTLLGKAMALYPLS 330
               L +K+M I  + +F F    +  +L+ A   L +L ALD +  LT LG+ MA +PL 
Sbjct: 877  MTTLTMKAMGINDLLSFDFMDPPQPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLE 936

Query: 331  PRHSRMILTVIKNTRYKHIRNSSLLLAYAVAAAAALSLPNPFVMQYEGNDSNKDSETSEK 390
            P  S+M+L  +       I          +   A +   N F    E     K ++  +K
Sbjct: 937  PPLSKMLLASVDLGCSDEI----------LTMIAMIQTGNIFYRPRE-----KQAQADQK 981

Query: 391  SRMGDNENNIDKTEKTKRKKLKQTSKVAREKFRIVSSDALAIAYALQCFEHSQNSVQFCE 450
                                        R KF     D L +    + ++    S  +C 
Sbjct: 982  ----------------------------RAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCF 1013

Query: 451  DNALHFKTMDEMSKLRQQLLRLVFFQNDKGGLEQEYSWTHVTLEDVEHVWRVSSAHYPLP 510
            +N +  +++     +R+QLL ++    DK  L+   +  + T                  
Sbjct: 1014 ENFIQSRSLRRAQDVRKQLLSIM----DKYKLDVVTAGKNFT------------------ 1051

Query: 511  LVEERLICRAICAGWADRVAKRIPISKAVDGETISRAGRYQSCMVDESIFIHRWSSVSTV 570
                  I +AI AG+    A++ P               Y++ + ++ ++IH  S++   
Sbjct: 1052 -----KIRKAITAGFFFHGARKDP------------QEGYRTLVENQPVYIHPSSALFQR 1094

Query: 571  HPEFLVYNELLETKRPNKEGETSAKRAYMHGVTNVDPTWLVENA 614
             P++++Y++L+ T            + YM  VT +DP WLVE A
Sbjct: 1095 QPDWVIYHDLVMT-----------TKEYMREVTVIDPKWLVELA 1127


>At5g13010 pre-mRNA splicing factor ATP-dependent RNA helicase -like
            protein
          Length = 1226

 Score =  165 bits (417), Expect = 1e-40
 Identities = 128/464 (27%), Positives = 209/464 (44%), Gaps = 95/464 (20%)

Query: 151  LFVLPLYAMLPAAAQLRVFDGVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYD 210
            L +LP+Y+ LPA  Q ++F   ++G R  +VATN+AETSLT+ GI YV+DTG  K+K ++
Sbjct: 775  LLILPIYSQLPADLQAKIFQKPEDGARKCIVATNIAETSLTVDGIYYVIDTGYGKMKVFN 834

Query: 211  SSNGMETYEVKWISKASAAQRAGRAGRTAAGHCYRLYSSAAFSNEFPEFSPAEVEKVPVH 270
               GM+  +V  IS+A++ QRAGRAGRT  G CYRLY+ +A+ NE       E+++  + 
Sbjct: 835  PRMGMDALQVFPISRAASDQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLG 894

Query: 271  GVVLLLKSMQIKKVANFPFPTSLKAASLLEAENCLRALEALDSKDELTLLGKAMALYPLS 330
             VVLLLKS++I  + +F F       ++L +   L  L AL++   LT LG  M  +PL 
Sbjct: 895  NVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGGLTDLGWKMVEFPLD 954

Query: 331  PRHSRMILTVIKNTRYKHIRNSSLLLAYAVAAAAALSLPNPFVMQYEGNDSNKDSETSEK 390
            P  ++M+L          +      +   +   + LS+P+ F                  
Sbjct: 955  PPLAKMLL----------MGERLDCIDEVLTIVSMLSVPSVFF----------------- 987

Query: 391  SRMGDNENNIDKTEKTKRKKLKQTSKVAREKFRIVSSDALAIAYALQCFEHSQNSVQFCE 450
                            + K+  + S  AREKF +  SD L +    Q ++       +C 
Sbjct: 988  ----------------RPKERAEESDAAREKFFVPESDHLTLLNVYQQWKEHDYRGDWCN 1031

Query: 451  DNALHFKTMDEMSKLRQQLLRLVFFQNDKGGLEQEYSWTHVTLEDVEHVWRVSSAHYPLP 510
            D+ L  K + +  ++R QLL ++                 + L      W +        
Sbjct: 1032 DHYLQVKGLRKAREVRSQLLDIL-------------KQLKIELRSCGPDWDI-------- 1070

Query: 511  LVEERLICRAICAGWADRVAKRIPISKAVDGETISRAGRYQSCMVDESIFIHRWSSVSTV 570
                  + +AIC+ +    A+            +   G Y +C       +H  S++  +
Sbjct: 1071 ------VRKAICSAYFHNSAR------------LKGVGEYVNCRTGMPCHLHPSSALYGL 1112

Query: 571  --HPEFLVYNELLETKRPNKEGETSAKRAYMHGVTNVDPTWLVE 612
               P+++VY+EL+ T            + YM   T+V+P WL E
Sbjct: 1113 GYTPDYVVYHELILT-----------TKEYMQCATSVEPHWLAE 1145


>At4g16680 RNA helicase
          Length = 883

 Score =  164 bits (415), Expect = 2e-40
 Identities = 138/465 (29%), Positives = 217/465 (45%), Gaps = 94/465 (20%)

Query: 151 LFVLPLYAMLPAAAQLRVFDGVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYD 210
           + + P+Y+ LP   Q +VF+   +G R VV+ATN+AETSLTI G+KYV+D G  K+ +Y+
Sbjct: 464 IIICPIYSNLPTPLQAKVFEPAPKGTRKVVLATNIAETSLTIDGVKYVIDPGYCKINSYN 523

Query: 211 SSNGMETYEVKWISKASAAQRAGRAGRTAAGHCYRLYSSAAFSNEFPEFSPAEVEKVPVH 270
              GME+  V  ISKASAAQRAGR+GRT  G C+RLY+      +    +  E+++  + 
Sbjct: 524 PRTGMESLLVTPISKASAAQRAGRSGRTGPGKCFRLYN----IKDLEPTTIPEIQRANLA 579

Query: 271 GVVLLLKSMQIKKVANFPFPTSLKAASLLEAENCLRALEALDSKDELTLLGKAMALYPLS 330
            VVL LKS+ I+ V NF F       +LL+A   L AL ALD   E+T +G+ M  +P+ 
Sbjct: 580 SVVLTLKSLGIQDVFNFDFMDPPPENALLKALELLYALGALDEIGEITKVGERMVEFPVD 639

Query: 331 PRHSRMILTVIKNTRYKHIRNSSLLLAYAVAAAAALSLPNPFVMQYEGNDSNKDSETSEK 390
           P  S+MI   + + +YK  +         +  AA LS+ N    +            ++K
Sbjct: 640 PMLSKMI---VGSEKYKCSKE-------IITIAAMLSVGNSVFYR-----PKNQQVFADK 684

Query: 391 SRMGDNENNIDKTEKTKRKKLKQTSKVAREKFRIVSSDALAIAYALQCFEHSQNSVQFCE 450
           +RM   E+    TE                       D +A+      ++    S Q+C 
Sbjct: 685 ARMDFYED----TENV--------------------GDHIALLRVYNSWKEENYSTQWCC 720

Query: 451 DNALHFKTMDEMSKLRQQLLRLVFFQNDKGGLEQEYSWTHVTLEDVEHVWRVSSAHYPLP 510
           +  +  K+M     +R QLL L+    +K G+E                  ++S    L 
Sbjct: 721 EKFIQSKSMKRARDIRDQLLGLL----NKIGVE------------------LTSNPNDLD 758

Query: 511 LVEERLICRAICAGWADRVAKRIPISKAVDGETISRAGRYQSCMVDESIFIHRWSSVSTV 570
            ++     +AI AG+    AK            + + G Y+     +++++H  S +   
Sbjct: 759 AIK-----KAILAGFFPHSAK------------LQKNGSYRRVKEPQTVYVHPNSGLFGA 801

Query: 571 HP-EFLVYNELLETKRPNKEGETSAKRAYMHGVTNVDPTWLVENA 614
            P ++LVY+EL+ T            + YM   T + P WL+E A
Sbjct: 802 SPSKWLVYHELVLT-----------TKEYMRHTTEMKPEWLIEIA 835


>At1g27900 ATP-dependent RNA helicase (At1g27900)
          Length = 700

 Score =  151 bits (382), Expect = 1e-36
 Identities = 130/491 (26%), Positives = 224/491 (45%), Gaps = 83/491 (16%)

Query: 126 EDSLDQSKVGREKIARENHDSSPGALFVLPLYAMLPAAAQLRVFDGVKEGERLVVVATNV 185
           +D +++     E+  R   + S     + PL+  LP   Q+RVF       R  +V+TN+
Sbjct: 223 QDDIEKLVSRLEEKVRSLAEGSCMDAIIYPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNI 282

Query: 186 AETSLTIPGIKYVVDTGREKVKNYDSSNGMETYEVKWISKASAAQRAGRAGRTAAGHCYR 245
           AETSLT+ G+ YV+D+G  K + Y+ S+GM + +V  ISK  A QRAGRAGRT  G CYR
Sbjct: 283 AETSLTVDGVVYVIDSGYVKQRQYNPSSGMFSLDVIQISKVQANQRAGRAGRTRPGKCYR 342

Query: 246 LYSSAAFSNEFPEFSPAEVEKVPVHGVVLLLKSMQIKKV--ANFPFPTSLKAASLLEAEN 303
           LY  A + ++F + +  E+++  + G VL LKS+ +  +    F F  +  + SL +A  
Sbjct: 343 LYPLAVYRDDFLDATIPEIQRTSLAGSVLYLKSLDLPDIDILKFDFLDAPSSESLEDALK 402

Query: 304 CLRALEALDSKDELTLLGKAMALYPLSPRHSRMILTVIKNTRYKHIRNSSLLLAYAVAAA 363
            L  ++A+D    +T +G+ M+  PL P  SR ++            N +  L+ A+   
Sbjct: 403 QLYFIDAIDENGAITRIGRTMSDLPLEPSLSRTLIEA----------NETGCLSQALTVV 452

Query: 364 AALSLPNPFVMQYEGNDSNKDSETSEKSRMGDNENNIDKTEKTKRKKLKQTSKVAREKFR 423
           A LS     +           S+ SEK R  D ++N+                       
Sbjct: 453 AMLSAETTLLPAR--------SKPSEKKRKHDEDSNLPNGSGY----------------- 487

Query: 424 IVSSDALAIAYALQCFEHSQNSVQFCEDNALHFKTMDEMSKLRQQLLRLVFFQNDKGGLE 483
               D + +    + ++ +     +C++N +  + M  +  +R+QL +++          
Sbjct: 488 ---GDHIQLLQIFESWDRTNYDPVWCKENGMQVRGMVFVKDVRRQLCQIM---------- 534

Query: 484 QEYSWTHVTLEDVEHVWRVSSAHYPLPLVEERLICRAICAGWADRVAKRIPISKAVDGET 543
           Q+ S   +   +V    R SS+       + R + +A+C G A+++A+R+          
Sbjct: 535 QKISKDRL---EVGADGRKSSSRD-----DYRKLRKALCVGNANQIAERMLRHNGY---- 582

Query: 544 ISRAGRYQSCMVDESIFIHRWSSVST----VHPEFLVYNELLETKRPNKEGETSAKRAYM 599
             R   +QS +V     +H  S +S     + P ++VY+EL+ T RP           +M
Sbjct: 583 --RTLSFQSQLVQ----VHPSSVLSADNDGMMPNYVVYHELISTTRP-----------FM 625

Query: 600 HGVTNVDPTWL 610
             V  VD  W+
Sbjct: 626 RNVCAVDMAWV 636


>At3g62310 ATP-dependent RNA helicase-like protein
          Length = 726

 Score =  151 bits (381), Expect = 2e-36
 Identities = 134/486 (27%), Positives = 220/486 (44%), Gaps = 99/486 (20%)

Query: 138 KIARE--NHDSSPGALFVLPLYAMLPAAAQLRVFDG----VKEGE---RLVVVATNVAET 188
           KI +E  N     G + V+PLY+ LP A Q ++FD     V EG    R +VV+TN+AET
Sbjct: 294 KINKEVGNLGDQVGPIKVVPLYSTLPPAMQQKIFDPAPEPVTEGGPPGRKIVVSTNIAET 353

Query: 189 SLTIPGIKYVVDTGREKVKNYDSSNGMETYEVKWISKASAAQRAGRAGRTAAGHCYRLYS 248
           SLTI GI YV+D G  K K Y+    +E+  V  ISKASA QR+GRAGRT  G C+RLY+
Sbjct: 354 SLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYT 413

Query: 249 SAAFSNEFPEFSPAEVEKVPVHGVVLLLKSMQIKKVANFPFPTSLKAASLLEAENCLRAL 308
             +F+N+    +  E+ +  +   VL LK + I  + +F F       +L+ A   L  L
Sbjct: 414 EKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYL 473

Query: 309 EALDSKDELTLLGKAMALYPLSPRHSRMILTVIKNTRYKHIRNSSLLLAYAVAAAAALSL 368
            ALD    LT  G+ M+ +PL P+ ++M++   +      I          ++ +A LS+
Sbjct: 474 GALDDDGNLTKTGEIMSEFPLDPQMAKMLIVSPEFNCSNEI----------LSVSAMLSV 523

Query: 369 PNPFVMQYEGNDSNKDSETSEKSRMGDNENNIDKTEKTKRKKLKQTSKVAREKFRIVSSD 428
           PN F+                                 + ++ ++ +  A+ +F  +  D
Sbjct: 524 PNCFI---------------------------------RPREAQKAADEAKARFGHIEGD 550

Query: 429 ALAIAYALQCFEHSQNSVQFCEDNALHFKTMDEMSKLRQQLLRLVFFQNDKGGLEQEYSW 488
            L +      F+ +     +C +N ++ + M     +RQQL+R++   N K         
Sbjct: 551 HLTLLNVYHAFKQNNEDPNWCYENFINNRAMKSADNVRQQLVRIMSRFNLK--------- 601

Query: 489 THVTLEDVEHVWRVSSAHYPLPLVEERLICRAICAGWADRVAKRIPISKAVDGETISRAG 548
             +   D       +S  Y +       I +A+ AG+  +VA             + R G
Sbjct: 602 --MCSTD------FNSRDYYIN------IRKAMLAGYFMQVAH------------LERTG 635

Query: 549 RYQSCMVDESIFIHRWSSVSTVHPEFLVYNELLETKRPNKEGETSAKRAYMHGVTNVDPT 608
            Y +   ++ + +H  S+     PE+++YNE + T            R ++  VT++   
Sbjct: 636 HYLTVKDNQVVHLHP-SNCLDHKPEWVIYNEYVLT-----------SRNFIRTVTDIRGE 683

Query: 609 WLVENA 614
           WLV+ A
Sbjct: 684 WLVDVA 689


>At2g47250 putative pre-mRNA splicing factor RNA helicase
          Length = 729

 Score =  149 bits (377), Expect = 5e-36
 Identities = 130/487 (26%), Positives = 221/487 (44%), Gaps = 99/487 (20%)

Query: 138 KIARE--NHDSSPGALFVLPLYAMLPAAAQLRVFDG----VKEGE---RLVVVATNVAET 188
           KI +E  N     G + V+PLY+ LP A Q ++FD     + EG    R +VV+TN+AET
Sbjct: 298 KINKEVSNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAET 357

Query: 189 SLTIPGIKYVVDTGREKVKNYDSSNGMETYEVKWISKASAAQRAGRAGRTAAGHCYRLYS 248
           SLTI GI YV+D G  K K Y+    +E+  V  ISKASA QR+GRAGRT  G C+RLY+
Sbjct: 358 SLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYT 417

Query: 249 SAAFSNEFPEFSPAEVEKVPVHGVVLLLKSMQIKKVANFPFPTSLKAASLLEAENCLRAL 308
             +F+N+    +  E+ +  +   VL LK + I  + +F F       +L+ A   L  L
Sbjct: 418 EKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYL 477

Query: 309 EALDSKDELTLLGKAMALYPLSPRHSRMILTVIKNTRYKHIRNSSLLLAYAVAAAAALSL 368
            ALD +  LT  G+ M+ +PL P+ S+M++   +      I          ++ +A LS+
Sbjct: 478 GALDDEGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEI----------LSVSAMLSV 527

Query: 369 PNPFVMQYEGNDSNKDSETSEKSRMGDNENNIDKTEKTKRKKLKQTSKVAREKFRIVSSD 428
           PN FV                                 + ++ ++ +  A+ +F  +  D
Sbjct: 528 PNCFV---------------------------------RPREAQKAADEAKARFGHIDGD 554

Query: 429 ALAIAYALQCFEHSQNSVQFCEDNALHFKTMDEMSKLRQQLLRLVFFQNDKGGLEQEYSW 488
            L +      ++ +     +C +N ++ + M     +RQQL+R++            ++ 
Sbjct: 555 HLTLLNVYHAYKQNNEDPNWCFENFVNNRAMKSADNVRQQLVRIM----------SRFNL 604

Query: 489 THVTLEDVEHVWRVSSAHYPLPLVEERLICRAICAGWADRVAKRIPISKAVDGETISRAG 548
              + +     + V+             I +A+ AG+  +VA             + R G
Sbjct: 605 KMCSTDFNSRDYYVN-------------IRKAMLAGYFMQVAH------------LERTG 639

Query: 549 RYQSCMVDESIFIHRWSSVSTVHPEFLVYNELLETKRPNKEGETSAKRAYMHGVTNVDPT 608
            Y +   ++ + +H  S+     PE+++YNE + T            R ++  VT++   
Sbjct: 640 HYLTVKDNQVVHLHP-SNCLDHKPEWVIYNEYVLT-----------TRNFIRTVTDIRGE 687

Query: 609 WLVENAK 615
           WLV+ A+
Sbjct: 688 WLVDVAQ 694


>At2g35920 ATP-dependent RNA helicase A like protein
          Length = 995

 Score =  146 bits (368), Expect = 5e-35
 Identities = 131/466 (28%), Positives = 207/466 (44%), Gaps = 68/466 (14%)

Query: 43  QTDRFSGYDEDDNNFDENESDSYDSETESELE-----FNDDDKNNHE---GSKNNNNIVD 94
           +  R++    D  N+ +  S     E+ES+ +     F D D N+H     S   N++  
Sbjct: 421 EKSRYNIKSSDSGNY-QGSSRGRRRESESKKDDLTTLFEDIDINSHYKSYSSATRNSLEA 479

Query: 95  VLGNEGSLASLKAAFENLSGQATLSSSNVNTEDSLDQSKVGREKIARENHDSSPGALFVL 154
             G +  +  ++A  E++       +  V      + SK+  EKI   N         VL
Sbjct: 480 WSGAQIDVDLVEATIEHICRLEGGGAILVFLTGWDEISKL-LEKINMNNFLGDSSKFLVL 538

Query: 155 PLYAMLPAAAQLRVFDGVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYDSSNG 214
           PL+  +P   Q  +FD     +R +V+ATN+AE+S+TI  + YVVD G+ K  +YD+ N 
Sbjct: 539 PLHGSMPTVNQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNK 598

Query: 215 METYEVKWISKASAAQRAGRAGRTAAGHCYRLYSSAAFSNEFPEFSPAEVEKVPVHGVVL 274
           +      WISKASA QR GRAGR  AG CYRLY    + + FP++   E+ + P+  + L
Sbjct: 599 VACLLPSWISKASAHQRRGRAGRVQAGVCYRLYPKVIY-DAFPQYQLPEIIRTPLQELCL 657

Query: 275 LLKSMQIKKVANFPFPTSLKAASLLEAENC---LRALEALDSKDELTLLGKAMALYPLSP 331
            +KS+Q+  + +F    +L+    L  EN    L+ + AL+  +ELT LG+ +   P+ P
Sbjct: 658 HIKSLQVGSIGSF-LAKALQPPDALAVENAIELLKTIGALNDVEELTPLGRHLCTLPVDP 716

Query: 332 RHSRMILTVIKNTRYKHIRNSSLLLAYAVAAAAALSLPNPFVMQYEGNDSNKDSETSEKS 391
              +M+L          I      +  A+  AAAL+  +PFV+       N+  E  E  
Sbjct: 717 NIGKMLL----------IGAIFQCVNPALTIAAALAYRSPFVLPL-----NRKEEADEAK 761

Query: 392 R--MGDNENNIDKTEKTKRKKLKQTSKVAREKFRIVSSDALAIAYALQCFEHSQ---NSV 446
           R   GD+                              SD +A+  A + +  ++   N  
Sbjct: 762 RYFAGDS-----------------------------CSDHIALLKAYEGYRDAKRGGNEK 792

Query: 447 QFCEDNALHFKTMDEMSKLRQQLLRLV----FFQNDKGGLEQEYSW 488
            FC  N L   T+  M  +R Q L L+    F    K     +YS+
Sbjct: 793 DFCWQNFLSPVTLRMMEDMRNQFLDLLSDIGFVDKSKPNAYNQYSY 838


>At1g06670 DEIH-box RNA/DNA helicase
          Length = 1576

 Score =  133 bits (335), Expect = 3e-31
 Identities = 93/296 (31%), Positives = 153/296 (51%), Gaps = 28/296 (9%)

Query: 136 REKIARENHDSSPGALFVLPLYAMLPAAAQLRVFDGVKEGERLVVVATNVAETSLTIPGI 195
           +EK+  +   +      +L L++ +PA  Q +VF+    G R +V+ATN+AE+++TI  +
Sbjct: 592 KEKLLDDRFFAHSAKFIILCLHSRVPAEEQKKVFNRPPRGCRKIVLATNIAESAVTIDDV 651

Query: 196 KYVVDTGREKVKNYDSSNGMETYEVKWISKASAAQRAGRAGRTAAGHCYRLYSSAAFSNE 255
            YV+D+GR K K+YD  N + T +  W+SKA+A QRAGRAGR  AG CY LYS    ++ 
Sbjct: 652 VYVIDSGRMKEKSYDPYNDVSTLQSSWVSKANAKQRAGRAGRCQAGICYHLYSKLRAAS- 710

Query: 256 FPEFSPAEVEKVPVHGVVLLLKSMQ--------IKKVANFPFPTSLKAASLLEAENCLRA 307
            PE+   EV ++PV  + L +K +         ++K+ + P   S++ A ++     L+ 
Sbjct: 711 LPEYRVPEVMRMPVDELCLQVKMLDPNCNVNDFLQKLMDPPVAQSIENALII-----LKD 765

Query: 308 LEALDSKDELTLLGKAMALYPLSPRHSRMI-LTVIKNTRYKHIRNSSLLLAYAVAAAAAL 366
           + AL  ++ELT LG+     P+ PR S+MI   ++ N            L  A+  A A 
Sbjct: 766 IGALTPEEELTELGQKFGQLPVHPRISKMIYFAILVN-----------CLDPALILACAA 814

Query: 367 SLPNPFVMQYEGNDSNKDSETSEK--SRMGDNENNIDKTEKTKRKKLKQTSKVARE 420
              +PF M     D  K +    +  S  GD+ +++      +  K  + S  A+E
Sbjct: 815 DEKDPFTMPLSPGDRKKAAAAKHELASLYGDHSDHLATVAAFQCWKNAKASGQAKE 870


>At1g48650 hypothetical protein
          Length = 1167

 Score =  130 bits (327), Expect = 3e-30
 Identities = 108/405 (26%), Positives = 181/405 (44%), Gaps = 76/405 (18%)

Query: 148 PGALFVLPLYAMLPAAAQLRVFDGVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKVK 207
           P  + +L  +  + ++ Q  +FD   EG R +V+ATN+AETS+TI  + YV+D G+ K  
Sbjct: 577 PNKVLLLACHGSMASSEQRLIFDRPPEGIRKIVLATNMAETSITINDVVYVIDCGKAKET 636

Query: 208 NYDSSNGMETYEVKWISKASAAQRAGRAGRTAAGHCYRLYSSAAFSNEFPEFSPAEVEKV 267
           +YD+ N        WISKA+A QR GRAGR   G CY LY    +   F ++   E+ + 
Sbjct: 637 SYDALNNTPCLLPSWISKAAARQRRGRAGRVMPGECYHLYPRCVY-EAFADYQQPELLRT 695

Query: 268 PVHGVVLLLKSMQIKKVANFPFPTSLKAASLLEAENC---LRALEALDSKDELTLLGKAM 324
           P+  + L +KS+ +  ++ F    +L+    L  +N    L+ + ALD  + LT LGK +
Sbjct: 696 PLQSLCLQIKSLGLGSISEF-LSRALQPPEALSVQNAVEYLKIIGALDDDENLTPLGKNL 754

Query: 325 ALYPLSPRHSRM-ILTVIKNTRYKHIRNSSLLLAYAVAAAAALSLPNPFVMQYEGNDSNK 383
           ++ P+ P+  +M IL  I N            L   +   A LS+ +PF+M ++  D   
Sbjct: 755 SMLPVEPKLGKMLILGAIFN-----------CLDPVMTVVAGLSVRDPFLMPFDKKD--- 800

Query: 384 DSETSEKSRMGDNENNIDKTEKTKRKKLKQTSKVAREKFRIVS-SDALAIAYALQCF--- 439
                                          ++ AR KF     SD L +  A   +   
Sbjct: 801 ------------------------------LAETARSKFSGRDYSDHLTLVRAYNGWKDA 830

Query: 440 EHSQNSVQFCEDNALHFKTMDEMSKLRQQLLRLVFFQNDKGGLEQEYSWTHVTLEDVEHV 499
           E + +   +C  N L  +T+  M  +R+Q   L+          +E S     ++++E  
Sbjct: 831 ERTHSGYDYCWKNFLSSQTLKAMDSMRKQFFNLL----------KEAS----LIDNIEGC 876

Query: 500 WRVSSAHYPLPLVEERLICRAICAGWADRVAKRIPISKAVDGETI 544
            ++S         +E L+   ICAG    V   +   K++  +T+
Sbjct: 877 SKLSH--------DEHLVRAIICAGMFPGVCSVVNKEKSITLKTM 913


>At2g01130 ATP-dependent RNA like helicase A
          Length = 899

 Score =  125 bits (315), Expect = 7e-29
 Identities = 90/346 (26%), Positives = 162/346 (46%), Gaps = 55/346 (15%)

Query: 136 REKIARENHDSSPGALFVLPLYAMLPAAAQLRVFDGVKEGERLVVVATNVAETSLTIPGI 195
           +EK+       +P  + +L  +  +    Q  +F+    G R +V+ATN+AETS+TI  +
Sbjct: 301 KEKLQIHPIFGNPDLVMLLACHGSMETFEQRLIFEEPASGVRKIVLATNIAETSITINDV 360

Query: 196 KYVVDTGREKVKNYDSSNGMETYEVKWISKASAAQRAGRAGRTAAGHCYRLYSSAAFSNE 255
            +V+D G+ K  +YD+ N        WISK SA QR GRAGR   G CY LY    + + 
Sbjct: 361 AFVIDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVRPGQCYHLYPKCVY-DA 419

Query: 256 FPEFSPAEVEKVPVHGVVLLLKSMQIKKVANFPFPTSLKAASLLEAENC---LRALEALD 312
           F E+   E+ + P+H + L +KS+ +  ++ F    +L++  LL  +     L+ + ALD
Sbjct: 420 FAEYQLPEILRTPLHSLCLQIKSLNLGSISEF-LSRALQSPELLAVQKAIAFLKIIGALD 478

Query: 313 SKDELTLLGKAMALYPLSPRHSRMILTVIKNTRYKHIRNSSLL--LAYAVAAAAALSLPN 370
             ++LT LG+ ++  P+ P+  +M++              ++L  L   +  AA LS+ +
Sbjct: 479 ENEDLTTLGRYLSKLPMEPKLGKMLIL------------GAILGCLDPILTVAAGLSVRD 526

Query: 371 PFVMQYEGNDSNKDSETSEKSRMGDNENNIDKTEKTKRKKLKQTSKVAREKFRIVSSDAL 430
           PF+                             T + K    K  ++ A+ +F    SD L
Sbjct: 527 PFL-----------------------------TPQDK----KDLAEAAKSQFSRDHSDHL 553

Query: 431 AIAYALQCFEHSQNS---VQFCEDNALHFKTMDEMSKLRQQLLRLV 473
           A+  A + ++ ++       +C  N L  +++  +  LR++   L+
Sbjct: 554 ALVRAYEGWKKAEEESAVYDYCWKNFLSIQSLRAIDSLRKEFFSLL 599


>At1g26370 hypothetical protein
          Length = 710

 Score =  123 bits (308), Expect = 5e-28
 Identities = 94/330 (28%), Positives = 158/330 (47%), Gaps = 46/330 (13%)

Query: 137 EKIARENHDSSPG---ALFVLPLYAMLPAAAQLRVFDGVKEGERLVVVATNVAETSLTIP 193
           E++ +E   + P     L  L +++ LP+  Q++VF     G R V++ATN+AETS+TIP
Sbjct: 301 ERLVQERLQNIPEDKRKLLPLAIFSALPSEQQMKVFAPAPTGFRKVILATNIAETSITIP 360

Query: 194 GIKYVVDTGREKVKNYDSSNGMETYEVKWISKASAAQRAGRAGRTAAGHCYRLYSSAAFS 253
           GI+YV+D G  K ++YD S GME+ +V   SKA   QR+GRAGR   G  +RLY    F 
Sbjct: 361 GIRYVIDPGFVKARSYDPSKGMESLDVVPASKAQTLQRSGRAGREGPGKSFRLYPEREF- 419

Query: 254 NEFPEFSPAEVEKVPVHGVVLLLKSMQIKKVANFPFPTSLKAASLLEAENCLRALEALDS 313
            +  + +  E+++  +  ++L LK++ I  +  F F       ++++A   L +L AL  
Sbjct: 420 EKLEDSTKPEIKRCNLSNIILQLKALGIDDIVGFDFIDKPSRGAIIKALAELHSLGALAD 479

Query: 314 KDEL-TLLGKAMALYPLSPRHSRMILTVIKNTRYKHIRNSSLLLAYAVAAAAALSLPNPF 372
             +L   +G  M+  PL P +S+ ++          + N    L   +   A LS+ + F
Sbjct: 480 DGKLENPVGYQMSRLPLEPVYSKALI----------LANQFNCLEEMLITVAVLSVESIF 529

Query: 373 VMQYEGNDSNKDSETS-------------------------EKSRMGDNENNIDKTEKTK 407
              Y+  +  +++ TS                         EK +   + NNIDK  K  
Sbjct: 530 ---YDPREKREEARTSKNHFASVEGDHLTYLSVYRESDEFLEKRKAAGSGNNIDKIMKKW 586

Query: 408 RKK---LKQTSKVAREKFRIVSSDALAIAY 434
            K+     ++ K AR+ +R +      I +
Sbjct: 587 CKENYVNSRSLKHARDIYRQIREHVEQIGF 616



 Score = 33.9 bits (76), Expect = 0.36
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 11/67 (16%)

Query: 548 GRYQSCMVDESIFIHRWSSVSTVHPEFLVYNELLETKRPNKEGETSAKRAYMHGVTNVDP 607
           G Y++    E + IH  S +    PE +++NEL++T            + Y+  +T +D 
Sbjct: 647 GTYRALESGEVVHIHPTSVLFRAKPECVIFNELMQT-----------SKKYIKNLTIIDS 695

Query: 608 TWLVENA 614
            WL E A
Sbjct: 696 LWLSELA 702


>At4g18465 RNA helicase - like protein
          Length = 720

 Score =  118 bits (295), Expect = 1e-26
 Identities = 108/432 (25%), Positives = 190/432 (43%), Gaps = 59/432 (13%)

Query: 194 GIKYVVDTGREKVKNYDSSNGMETYEVKWISKASAAQRAGRAGRTAAGHCYRLYSSAAFS 253
           G+ YV+D+G  K K Y+  + +E+  V  ISKASA QR+GRAGR   G CYRLY+   F 
Sbjct: 324 GVVYVIDSGFSKQKFYNPISDIESLVVAPISKASARQRSGRAGRVRPGKCYRLYTEDYFL 383

Query: 254 NEFPEFSPAEVEKVPVHGVVLLLKSMQIKKVANFPFPTSLKAASLLEAENCLRALEALDS 313
           N+ P     E+++  +   V+ LK++ I  +  F +P    + +++ A   L +L+ LD 
Sbjct: 384 NQMPGEGIPEMQRSNLVSTVIQLKALGIDNILGFDWPAPPSSEAMIRALEVLYSLQILDD 443

Query: 314 KDELTL-LGKAMALYPLSPRHSRMILTVIKNTRYKHIRNSSLLLAYAVAAAAALSLPNPF 372
             +LT   G  +A  PL P  S+MIL   +      I   + +L+  V A     L   F
Sbjct: 444 DAKLTSPTGFQVAELPLDPMISKMILASSELGCSHEIITIAAVLSVQVKALYPFFLCLKF 503

Query: 373 VM-QYEGNDSN--KDSETSEKSRMGD---NENNIDKTEKTK----RKKLKQTSKVAREKF 422
           ++  Y  N+    K      +  + D   N  N++           + +++    A+ +F
Sbjct: 504 LLFIYIRNNRTYCKFVIICFRLELWDLKLNRCNLEYVSMQSVWIIARGVQKEQDEAKLRF 563

Query: 423 RIVSSDALAIAYALQCFEHSQNSVQFCEDNALHFKTMDEMSKLRQQLLRLVFFQNDKGGL 482
                D +      + F  S+   Q+C  N L++++M ++ ++R QL R+          
Sbjct: 564 AAAEGDHVTFLNVYKGFLESKKPTQWCYKNFLNYQSMKKVVEIRDQLKRIA--------- 614

Query: 483 EQEYSWTHVTLEDVEHVWRVSSAHYPLPLVEERLICRAICAGWADRVAKRIPISKAVDGE 542
                   +TL+  +               +   + +A+ AG+     +  P S  V   
Sbjct: 615 ----RRLGITLKSCDG--------------DMEAVRKAVTAGFFANACRLEPHSNGV--- 653

Query: 543 TISRAGRYQSCMVDESIFIHRWSSVSTVHPEFLVYNELLETKRPNKEGETSAKRAYMHGV 602
                  Y++    E ++IH  S +  V+P+++VY  ++ T           +R YM  V
Sbjct: 654 -------YKTIRGSEEVYIHPSSVLFRVNPKWVVYQSIVST-----------ERQYMRNV 695

Query: 603 TNVDPTWLVENA 614
             ++P+WL E A
Sbjct: 696 VTINPSWLTEVA 707


>At5g10370 putative protein
          Length = 1751

 Score =  117 bits (294), Expect = 2e-26
 Identities = 80/223 (35%), Positives = 120/223 (52%), Gaps = 10/223 (4%)

Query: 147 SPGALFVLPLYAMLPAAAQLRVFDGVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKV 206
           +P A+  LPL+  L    Q RVF     G R V+ ATN+AETSLTIPG+KYV+D+G  K 
Sbjct: 546 TPSAI-ALPLHGKLSFEEQFRVFQN-HPGRRKVIFATNIAETSLTIPGVKYVIDSGMVKE 603

Query: 207 KNYDSSNGMETYEVKWISKASAAQRAGRAGRTAAGHCYRLYSSAAFSNEFPEFSPAEVEK 266
             Y+   GM   +V  +S++SA QRAGRAGRT  G CYRLYS   F +      P E+ +
Sbjct: 604 SKYEPRTGMSILKVCRVSQSSARQRAGRAGRTEPGRCYRLYSKNDFDSMNLNQEP-EIRR 662

Query: 267 VPVHGVVLLLKSMQIKKVANFPFPTSLKAASLLEAENCLRALEALDSKD---ELTLLGKA 323
           V +   +L + ++ +  +A F F  +    ++  A   L  L A+  K+   ELT  G  
Sbjct: 663 VHLGVALLRMLALGVNNIAEFNFVDAPVPEAIAMAVQNLVQLGAVVEKNGVHELTQEGHC 722

Query: 324 MALYPLSPRHSRMILTVIKNTRYKHIRNSSLLLAYAVAAAAAL 366
           +    L P+  ++IL   ++   K      ++LA  +A A+++
Sbjct: 723 LVKLGLEPKLGKLILGCFRHRMGK----EGIVLAAVMANASSI 761


>At4g01020 unknown protein
          Length = 1787

 Score =  115 bits (289), Expect = 7e-26
 Identities = 80/223 (35%), Positives = 119/223 (52%), Gaps = 10/223 (4%)

Query: 147 SPGALFVLPLYAMLPAAAQLRVFDGVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKV 206
           +P A+  LPL+  L    Q  VF     G R V+ ATN+AETSLTIPG+KYV+D+G  K 
Sbjct: 543 APSAI-ALPLHGKLSFEEQFMVFQNYP-GRRKVIFATNIAETSLTIPGVKYVIDSGMVKE 600

Query: 207 KNYDSSNGMETYEVKWISKASAAQRAGRAGRTAAGHCYRLYSSAAFSNEFPEFSPAEVEK 266
             Y+   GM   +V  +S++SA QRAGRAGRT  G CYRLYS   F +      P E+ +
Sbjct: 601 SKYEPRTGMSILKVCQVSQSSARQRAGRAGRTEPGRCYRLYSKTDFDSMNLNQEP-EIRR 659

Query: 267 VPVHGVVLLLKSMQIKKVANFPFPTSLKAASLLEAENCLRALEALDSKD---ELTLLGKA 323
           V +   +L + ++ I  +A F F  +    ++  A   L  L A+  K+   ELT  G  
Sbjct: 660 VHLGVALLRMLALGIDNIAAFEFVDAPVPEAIAMAIQNLVQLGAVVEKNGVLELTQEGHC 719

Query: 324 MALYPLSPRHSRMILTVIKNTRYKHIRNSSLLLAYAVAAAAAL 366
           +    L P+  ++IL   ++   K      ++LA  +A A+++
Sbjct: 720 LVKLGLEPKLGKLILGCFRHRMGK----EGIVLAAVMANASSI 758


>At1g58050 hypothetical protein
          Length = 1393

 Score =  107 bits (268), Expect = 2e-23
 Identities = 121/449 (26%), Positives = 198/449 (43%), Gaps = 79/449 (17%)

Query: 152  FVLPLYAMLPAAAQLRVFDGVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYDS 211
            ++LPL++ + +  Q +VF    +G R V++ATN+AETS+TI  + YV+D+G+ K   Y+ 
Sbjct: 915  WLLPLHSSIASTEQKKVFLRPPKGIRKVIIATNIAETSITIEDVVYVIDSGKHKENRYNP 974

Query: 212  SNGMETYEVKWISKASAAQRAGRAGRTAAGHCYRLYSSAAFSNEFPEFSPAEVEKVPVHG 271
               + +    W+SKA+A QR GRAGR   GHC+ LY+   F      +   E        
Sbjct: 975  HKKLSSMVEDWVSKANARQRMGRAGRVKPGHCFSLYTRHRFEKLMRPYQVPE-------- 1026

Query: 272  VVLLLKSMQIKKVANFPFPTSLKAASLLEAENCLRALEALDSKDELTLLGKAMALYPLSP 331
               +L++++       P  +++ +A LL     L  + AL+  +ELT LG  +A  P+  
Sbjct: 1027 ---MLRALEP------PSESAINSAILL-----LHKVGALEGDEELTPLGHHLAKLPVDL 1072

Query: 332  RHSRMILTVIKNTRYKHIRNSSLLLAYAVAAAAALS-LPNPFVMQYEGNDSNKD----SE 386
               +M+L       Y  I      L+  ++ AA LS   +PFV  Y  ++ N D    + 
Sbjct: 1073 LIGKMLL-------YGGIFG---CLSPILSIAAFLSCCKSPFV--YAKDEQNVDRVKLAL 1120

Query: 387  TSEKSRMGDNENNIDKTEKTKRKKLKQTSKVAREKF-RIVSSDALAIAYALQCFEHSQNS 445
             S+K     N NN D      R+       VA EK+ RI+       A +          
Sbjct: 1121 LSDKLESSSNLNNND------RQSDHLLMVVAYEKWVRILHEQGFKAAES---------- 1164

Query: 446  VQFCEDNALHFKTMDEMSKLRQQL------LRLVFFQNDKGGLEQEYSWTHVTLEDVEHV 499
              FCE   L+   M  M + R +       + L+     KG  ++ +    V   D    
Sbjct: 1165 --FCESKFLNSSVMRMMRERRVEFGMLLADIGLINLPKGKGRRKENFD---VWFSDKTQP 1219

Query: 500  WRVSSAHYPLPLVEERLICRAICAGWADRVAKRIPISKAVDGETISRAGRYQSCMVDESI 559
            + + S     P V + ++C  +C   A+ +  R  ++K  + ET   A  +        +
Sbjct: 1220 FNMYSQE---PEVVKAILCAGLCPNIAEGLVNR--LTKPAE-ETQRYAVWHDG---KREV 1270

Query: 560  FIHRWS---SVSTVHPEFLVYNELLETKR 585
             IHR S   +       F+V+ E LETK+
Sbjct: 1271 HIHRNSINKNCKAFQYPFIVFLEKLETKK 1299


>At2g47680 putative ATP-dependent RNA helicase A
          Length = 1015

 Score = 80.9 bits (198), Expect = 3e-15
 Identities = 52/163 (31%), Positives = 86/163 (51%), Gaps = 10/163 (6%)

Query: 177 RLVVVATNVAETSLTIPGIKYVVDTGREKVKNYDSSNGMETYEVKWISKASAAQRAGRAG 236
           R V++ATN+AE+S+TIP + YV+D+ R     +D S   +  ++ W+S++ A QR GR G
Sbjct: 322 RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDPSRKRDAVQLVWVSRSQAEQRRGRTG 381

Query: 237 RTAAGHCYRLYSSAAFSNEFPEFSPAEVEKVPVHGVVLLLKSMQIKKV--ANFPFPTSLK 294
           RT  G  YRL  S AF N+  E  P  + K+ +   VL +   + + +  AN     ++ 
Sbjct: 382 RTCDGEVYRLVPS-AFFNKLEEHEPPSILKLSLRQQVLHICCTESRAINDANALLAKAMD 440

Query: 295 AASLLEAENCLRALEALDS-------KDELTLLGKAMALYPLS 330
                  ++ LR L ++ +       + E T  G+ +A +PLS
Sbjct: 441 PPDPDVVDDALRMLLSIQALRKSPRGRYEPTFYGRLLASFPLS 483


>At1g58060 hypothetical protein
          Length = 1389

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 27/69 (39%), Positives = 45/69 (65%)

Query: 148  PGALFVLPLYAMLPAAAQLRVFDGVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKVK 207
            P A ++LPL++ + ++ Q +VF    +G R V+ ATN+AETS+TI  + YV+D+G+ K  
Sbjct: 958  PAADWLLPLHSSIASSEQRKVFLRPPKGLRKVIAATNIAETSITIDDVVYVIDSGKHKEN 1017

Query: 208  NYDSSNGME 216
             Y+    +E
Sbjct: 1018 RYNPQKALE 1026


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.315    0.130    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,532,068
Number of Sequences: 26719
Number of extensions: 762261
Number of successful extensions: 4984
Number of sequences better than 10.0: 179
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 4272
Number of HSP's gapped (non-prelim): 506
length of query: 789
length of database: 11,318,596
effective HSP length: 107
effective length of query: 682
effective length of database: 8,459,663
effective search space: 5769490166
effective search space used: 5769490166
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)