BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147011.8 - phase: 0
(226 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56700 unknown protein 321 2e-88
At1g23440 unknown protein 294 3e-80
At1g30240 hypothetical protein 29 1.8
At5g19920 TipD - like WD repeat protein 29 2.3
At4g22300 unknown protein 28 3.0
At5g20610 unknown protein 28 3.9
At3g04710 ankyrin-like protein 28 3.9
At4g04670 unknown protein 28 5.1
At3g50100 hypothetical protein 28 5.1
>At1g56700 unknown protein
Length = 219
Score = 321 bits (823), Expect = 2e-88
Identities = 155/220 (70%), Positives = 185/220 (83%), Gaps = 3/220 (1%)
Query: 1 MGSEGPSAAVTTVYITGFKKFHGVSENPTETIVNNLTEYVKKKGLPKGLAIGSCSILDTA 60
MGSEGP+ T++ITGFKKFHGV+ENPTE + NNL EY+ K + K + +GSC++L+TA
Sbjct: 1 MGSEGPTGV--TIHITGFKKFHGVAENPTEKMANNLKEYLAKNCVSKDVNLGSCTVLETA 58
Query: 61 GQGALVPLYQTLQSAIIAKESESSSSNKIIWLHFGVNSGATRFAIERQAVNEATFRCPDE 120
GQGAL LYQ LQSA+ KESES + K IW+HFGVNSGAT+FAIE+QAVNEATFRCPDE
Sbjct: 59 GQGALASLYQLLQSAVNTKESESLTG-KTIWVHFGVNSGATKFAIEQQAVNEATFRCPDE 117
Query: 121 MGWKPQKVPIVPSDGPISRIRETTLPVEEITKTLATKGYDVMTSDDAGRFVCNYVYYHSL 180
+GWKPQ +PIVPSDGPIS +R+T LPVEEITK L G++V+TSDDAGRFVCNYVYYHSL
Sbjct: 118 LGWKPQNLPIVPSDGPISTVRKTNLPVEEITKALEKNGFEVITSDDAGRFVCNYVYYHSL 177
Query: 181 RFAEQNGNKSLFVHVPLFFTINEETQMQFAASLLEVLANV 220
RFAEQN +SLFVHVPLF ++EETQM+F SLLEVLA++
Sbjct: 178 RFAEQNKTRSLFVHVPLFVAVDEETQMRFTVSLLEVLASI 217
>At1g23440 unknown protein
Length = 217
Score = 294 bits (752), Expect = 3e-80
Identities = 140/218 (64%), Positives = 176/218 (80%), Gaps = 4/218 (1%)
Query: 1 MGSEGPSAAVTTVYITGFKKFHGVSENPTETIVNNLTEYVKKKGLPKGLAIGSCSILDTA 60
MGSEGP A T+++TGFKKF GVSENPTE I N L YV+K+GLP GL +GSCS+LDTA
Sbjct: 1 MGSEGPKAI--TIHVTGFKKFLGVSENPTEKIANGLKSYVEKRGLPSGLCLGSCSVLDTA 58
Query: 61 GQGALVPLYQTLQSAIIAKESESSSSNKIIWLHFGVNSGATRFAIERQAVNEATFRCPDE 120
G+GA LY+ L+S++++ + +++ ++WLH GVNSGAT+FAIERQAVNEA FRCPDE
Sbjct: 59 GEGAKSKLYEVLESSVVS--GDKNNNGTVVWLHLGVNSGATKFAIERQAVNEAHFRCPDE 116
Query: 121 MGWKPQKVPIVPSDGPISRIRETTLPVEEITKTLATKGYDVMTSDDAGRFVCNYVYYHSL 180
+GW+PQ++PIV DG IS+ +ET+ E I + L KG++V+ SDDAGRFVCNYVYYHSL
Sbjct: 117 LGWQPQRLPIVVEDGGISKAKETSCSTESIFQLLKKKGFEVVQSDDAGRFVCNYVYYHSL 176
Query: 181 RFAEQNGNKSLFVHVPLFFTINEETQMQFAASLLEVLA 218
RFAEQ G+KSLFVHVPLF I+E+TQMQF ASLLE +A
Sbjct: 177 RFAEQKGHKSLFVHVPLFSKIDEDTQMQFVASLLEAIA 214
>At1g30240 hypothetical protein
Length = 873
Score = 29.3 bits (64), Expect = 1.8
Identities = 20/72 (27%), Positives = 34/72 (46%), Gaps = 8/72 (11%)
Query: 119 DEMGWKPQKVPIVPSDGPISRIRETTLPVEEITKTLATKGYDVMTSDDAGRFVCNYVYYH 178
D++G + Q VPS+ I R +TTLP++E + + +D V V H
Sbjct: 723 DDLGNRWQAKADVPSNNAIQRTLDTTLPLQESNR--------LKVGNDLATVVSLSVQDH 774
Query: 179 SLRFAEQNGNKS 190
+ A +NG ++
Sbjct: 775 TDIVASENGQQA 786
>At5g19920 TipD - like WD repeat protein
Length = 656
Score = 28.9 bits (63), Expect = 2.3
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 104 AIERQAVNEATFRCPDEMGWKPQKVPIVPSDGPISRIRETTLPVEEITKT---------L 154
A R VNE T P M + +P + GP ++ R ++P E + +T +
Sbjct: 149 ATVRAEVNETTQAQP--MATRDYNIPREDTCGPEAK-RPRSIPDEVVRETQDRDKETQPM 205
Query: 155 ATKGYDVMTSDDAG 168
AT+GYDV D +G
Sbjct: 206 ATRGYDVPKEDKSG 219
>At4g22300 unknown protein
Length = 228
Score = 28.5 bits (62), Expect = 3.0
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 44 GLPKGLAIGSCSIL---DTAGQGALVPLYQTLQSAIIAKESESSSSNKIIWLH 93
GL +G A+ S+L T G GA++ + S+II++ E + I+W H
Sbjct: 104 GLSQGGALTLASVLLYPKTLGGGAVLSGWVPFTSSIISQFPEEAKKTPILWSH 156
>At5g20610 unknown protein
Length = 1164
Score = 28.1 bits (61), Expect = 3.9
Identities = 27/101 (26%), Positives = 40/101 (38%), Gaps = 20/101 (19%)
Query: 99 GATRFAIERQAVNEATFRCPDEMGWKPQKVP----------IVPSDGPISRIRETTLPVE 148
GA F +E VN P E+ K +VP I+P + P+ ET +P E
Sbjct: 382 GAENFPLEEPLVNGNETDVPFELLKKAGEVPTAGRDEVGTEILPPEEPLVNGNETDVPFE 441
Query: 149 EITKTLATKGYDVMTSDDAGRFVCNYVYYHSLRFAEQNGNK 189
E+ + T + S++A V A + GNK
Sbjct: 442 EL---MITGEASIARSEEAVEIVTE-------ELAPEEGNK 472
>At3g04710 ankyrin-like protein
Length = 456
Score = 28.1 bits (61), Expect = 3.9
Identities = 22/90 (24%), Positives = 39/90 (42%), Gaps = 8/90 (8%)
Query: 22 HGVSENPTETIVNNLTEYVKKKGLPKGLA--IGSCSILDTAGQGALVPLYQTLQSAIIAK 79
H + ET+ +Y+ ++G +A +G+ ++ AG G + L + L S +
Sbjct: 95 HAARQGQIETV-----KYLLEQGADPNIASELGATALHHAAGTGE-IELLKELLSRGVPV 148
Query: 80 ESESSSSNKIIWLHFGVNSGATRFAIERQA 109
+SES S +IW A +E A
Sbjct: 149 DSESESGTPLIWAAGHDQKNAVEVLLEHNA 178
>At4g04670 unknown protein
Length = 995
Score = 27.7 bits (60), Expect = 5.1
Identities = 21/81 (25%), Positives = 36/81 (43%), Gaps = 7/81 (8%)
Query: 24 VSENPTETIVNNLTEYVKKKGLPKGLAIGSCSILDTAGQGALVPLYQTLQSAIIAKESES 83
V+++P + + ++T +K+KGLP+ L + G +VP A K+
Sbjct: 704 VAKSPLQRMREDITSILKQKGLPEELLDELPQKWERLGDIVVVP-------ATSFKDPTW 756
Query: 84 SSSNKIIWLHFGVNSGATRFA 104
SS N +W + A R A
Sbjct: 757 SSINDEVWCAVSKSLSANRLA 777
>At3g50100 hypothetical protein
Length = 406
Score = 27.7 bits (60), Expect = 5.1
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 145 LPVEEITKTLATK-GYDVMTSDDAGRFVCNYVYYHSLRFAEQ 185
+P EE+ + L+ K DV + GR+ C + +HS A+Q
Sbjct: 323 VPSEELEQVLSGKFTLDVKQAKTQGRYYCAFALFHSSEDADQ 364
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.316 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,709,238
Number of Sequences: 26719
Number of extensions: 188147
Number of successful extensions: 463
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 9
length of query: 226
length of database: 11,318,596
effective HSP length: 96
effective length of query: 130
effective length of database: 8,753,572
effective search space: 1137964360
effective search space used: 1137964360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC147011.8