BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147007.6 - phase: 0 /pseudo
(1105 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g13940 putative retroelement pol polyprotein 284 2e-76
At2g07010 putative retroelement pol polyprotein 276 5e-74
At2g07420 putative retroelement pol polyprotein 270 4e-72
At1g70010 hypothetical protein 263 5e-70
At1g36620 hypothetical protein 259 6e-69
At2g23330 putative retroelement pol polyprotein 258 1e-68
At2g20460 putative retroelement pol polyprotein 251 1e-66
At1g31210 putative reverse transcriptase 246 5e-65
At2g16000 putative retroelement pol polyprotein 244 2e-64
At2g24660 putative retroelement pol polyprotein 241 2e-63
At2g14930 pseudogene 239 6e-63
At1g53810 239 8e-63
At4g22040 LTR retrotransposon like protein 238 1e-62
At1g26990 polyprotein, putative 237 3e-62
At4g10690 retrotransposon like protein 233 3e-61
At2g15870 putative retroelement pol polyprotein 233 6e-61
At4g14460 retrovirus-related like polyprotein 229 9e-60
At1g47650 hypothetical protein 225 9e-59
At2g16670 putative retroelement pol polyprotein 224 2e-58
At1g44510 polyprotein, putative 223 4e-58
>At2g13940 putative retroelement pol polyprotein
Length = 1501
Score = 284 bits (727), Expect = 2e-76
Identities = 179/491 (36%), Positives = 258/491 (52%), Gaps = 19/491 (3%)
Query: 71 ANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQD 130
A+G KA +G + ++SL VLF+ LIS+SKL + C TF+ +QD
Sbjct: 432 ADGSKAFALSVGVLTLSNTVSLTNVLFVPSLNCTLISVSKLLKQTQCLATFTDTLCFLQD 491
Query: 131 RSTGKTIGT*FES*GLYYLHS-HPSTI--CGVSASPDIIHCRLGHPS---LDKLKVLVPH 184
RS+ IG+ E G+YYL P+ I V + + H RLGHPS L L +
Sbjct: 492 RSSKTLIGSGEERGGVYYLTDVTPAKIHTANVDSDQALWHQRLGHPSFSVLSSLPLFSKT 551
Query: 185 LSHLKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFI 244
S + S C+ C K R FP NK F++IH DVWGP RV ++ G Y++T +
Sbjct: 552 SSTVTSHSCDVCFRAKQTREVFPESINKTEEC-FSLIHCDVWGPYRVPASCGAVYFLTIV 610
Query: 245 DDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASH 304
DD+SR W LL ++S + F + QFGKT++++RSDN + S S+ +
Sbjct: 611 DDYSRAVWTYLLLEKSEVRQVLTNFLKYAEKQFGKTVKMVRSDNGTEFMCLS--SYFREN 668
Query: 305 GIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSS 364
GIIHQ+SC TPQQNG ERKHRH+++ R LL A P +FWG++IL A YLI R PSS
Sbjct: 669 GIIHQTSCVGTPQQNGRVERKHRHILNVARALLFQASLPIKFWGESILTAAYLINRTPSS 728
Query: 365 VLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGY 424
+L PY +L P+Y LRVFGS C+ H ++ D+DK R+ C+F+GY +KG+
Sbjct: 729 ILSGRTPYEVLHGSKPVY-SQLRVFGSACYVHRVTRDKDKFGQRSRSCIFVGYPFGKKGW 787
Query: 425 RCYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTSTTSTTDVTTSHVMPIPLFEPFVST 484
+ Y + F VS+DV F E+ F + ST ++TS V+ IP E S
Sbjct: 788 KVYDIERNEFLVSRDVIFREE--VFPYAGVNSSTLASTSLPTVSEDDDWAIPPLEVRGSI 845
Query: 485 QNPPQSQGNPEFRQYGITYELRHVEAP--ETAPIDSNDSTPKTPATNSSDSG-----IVP 537
+ + + + + E P E P D+ S+P + + + S + +VP
Sbjct: 846 DSVETERVVCTTDEVVLDTSVSDSEIPNQEFVPDDTPPSSPLSVSPSGSPNTPTTPIVVP 905
Query: 538 VSSPAAVPPER 548
V+SP V P +
Sbjct: 906 VASPIPVSPPK 916
>At2g07010 putative retroelement pol polyprotein
Length = 1413
Score = 276 bits (706), Expect = 5e-74
Identities = 177/490 (36%), Positives = 254/490 (51%), Gaps = 21/490 (4%)
Query: 71 ANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQD 130
A+G K +G ++SL+ VL++ +LIS+SKL + + C F+ ++QD
Sbjct: 415 ADGRKTFAISMGTFKLSETVSLSNVLYVPALNCSLISVSKLVKQIKCLALFTDTICVLQD 474
Query: 131 RSTGKTIGT*FES*GLYYL-HSHPSTICGVSASPD--IIHCRLGHPS---LDKLKVLVPH 184
R + IGT E G+YYL + +T+ V + D + H RLGHPS L L +
Sbjct: 475 RFSRTLIGTGEERDGVYYLTDAATTTVHKVDITTDHALWHQRLGHPSFSVLSSLPLFSGS 534
Query: 185 LSHLKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFI 244
+ S C+ C K R FP +NK S F++IH DVWGP RV S+ G Y++T +
Sbjct: 535 SCSVSSRSCDVCFRAKQTREVFPDSSNK-STDCFSLIHCDVWGPYRVPSSCGAVYFLTIV 593
Query: 245 DDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASH 304
DDFSR W LL +S + F + + QFGK+++I+RSDN + S S+
Sbjct: 594 DDFSRSVWTYLLLAKSEVRSVLTNFLAYTEKQFGKSVKIIRSDNGTEFMCLS--SYFKEQ 651
Query: 305 GIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSS 364
GI+HQ+SC TPQQNG ERKHRH+++ +R LL A P +FWG+A++ A YLI R PSS
Sbjct: 652 GIVHQTSCVGTPQQNGRVERKHRHILNVSRALLFQASLPIKFWGEAVMTAAYLINRTPSS 711
Query: 365 VLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGY 424
+ PY LL P Y LRVFGS C+AH ++ D+DK R+ C+F+GY QKG+
Sbjct: 712 IHNGLSPYELLHGCKPDY-DQLRVFGSACYAHRVTRDKDKFGERSRLCIFVGYPFGQKGW 770
Query: 425 RCYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTSTTSTTDVTT--SHVMPIPLFEPFV 482
+ Y S + F VS+DV F E+ F T G T T T T +P E
Sbjct: 771 KVYDLSTNEFIVSRDVVFREN--VFPYATNEGDTIYTPPVTCPITYDEDWLPFTTLEDRG 828
Query: 483 STQNPPQSQGNPEFRQYGITYELRHVEAPETAPIDSND----STPKTPATNSSDSGIVPV 538
S +N +P ++ + P++ P +D ST TP ++S
Sbjct: 829 SDEN---YLSDPPVCVTNVSESDTEHDTPQSLPTPVDDPLSPSTSVTPTQTPTNSSSSTS 885
Query: 539 SSPAAVPPER 548
S PP++
Sbjct: 886 PSTNVSPPQQ 895
>At2g07420 putative retroelement pol polyprotein
Length = 1664
Score = 270 bits (689), Expect = 4e-72
Identities = 163/439 (37%), Positives = 235/439 (53%), Gaps = 18/439 (4%)
Query: 67 NITDANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSF 126
N+ ANG + V G+G S + + S NL+S+ K T LNC F +
Sbjct: 339 NVVIANGDRIPVKGVGDLDLFDKSSKAFYMPTFTS--NLLSVKKATTDLNCYAIFGPNEV 396
Query: 127 LIQDRSTGKTIGT*FES*GLYYLH---------SHPSTICGVSASPDIIHCRLGHPSLDK 177
QD T + +G GLY L SH S+I G +A+ + H RLGHP
Sbjct: 397 HFQDIETSRVLGQGVTKDGLYVLEDTKPSVPLSSHFSSILG-NANSESWHARLGHPHSRA 455
Query: 178 LKVLVPHLSHLKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGY 237
LK+L+P S K+ +CE+C LGKH + FP + F++IHSDVW S S +
Sbjct: 456 LKLLLPSTS-FKNDECEACILGKHCKSVFPKSSTIYEKC-FDLIHSDVW-TSPCLSRENH 512
Query: 238 KYYVTFIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSF 297
KY+VTFID+ S+ TW TLL + + AF F + + + I+ILRSDN Y S +F
Sbjct: 513 KYFVTFIDEKSKFTWFTLLPSKDRVLEAFTNFQTYVTNHYDAKIKILRSDNRGEYTSHAF 572
Query: 298 NSFMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYL 357
+ HGIIHQ+SCP+TPQQNGVAERK+RHL++ R ++ + + P FW D ++ ACYL
Sbjct: 573 KQHLNKHGIIHQTSCPYTPQQNGVAERKNRHLMEVRRVMMFHTNVPKHFWIDGVVSACYL 632
Query: 358 ITRMPSSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGY 417
I + P+ +L + P+ +L P ++ LRVFG CF R+KL ++ K +F+GY
Sbjct: 633 INQTPTKILLDSSPFEVLNKVKP-FINHLRVFGCVCFVLISGEQRNKLQPKSTKGMFIGY 691
Query: 418 SKTQKGYRCYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTSTTSTTD-VTTSHVMPIP 476
S QKGY+CY + +S+DV F E + ++ T S +D T ++
Sbjct: 692 SINQKGYKCYVLETRKVLISRDVKFLESKSYYDKKNWEDIQDLTDSPSDRATNLRIILER 751
Query: 477 LFEPFVSTQNPPQSQGNPE 495
L + TQ P++ NPE
Sbjct: 752 LGVSNIQTQTTPRT-SNPE 769
>At1g70010 hypothetical protein
Length = 1315
Score = 263 bits (671), Expect = 5e-70
Identities = 149/376 (39%), Positives = 209/376 (54%), Gaps = 19/376 (5%)
Query: 90 LSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQDRSTGKTIGT*FES*GLYYL 149
L LN VLFI FNL+S+S LT+S+ C I F S ++QD + +G + LY +
Sbjct: 323 LILNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVGMGKQVANLYIV 382
Query: 150 H----SHPSTICGVSA----SPDIIHCRLGHPSLDKLKVLVPHLSHLKSLD-----CESC 196
SHP T ++ S D+ H RLGHPS+ KL+ + LS K + C C
Sbjct: 383 DLDSLSHPGTDSSITVASVTSHDLWHKRLGHPSVQKLQPMSSLLSFPKQKNNTDFHCRVC 442
Query: 197 QLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFIDDFSRCTWITLL 256
+ K + F S NK S PF++IH D WGP V + GY+Y++T +DD+SR TW+ LL
Sbjct: 443 HISKQKHLPFVSHNNKSSR-PFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLL 501
Query: 257 KDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHGIIHQSSCPHTP 316
+++S + TF + ++ QF TI+ +RSDNA +F F S GI+ SCP TP
Sbjct: 502 RNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAP---ELNFTQFYHSKGIVPYHSCPETP 558
Query: 317 QQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSSVLGNEIPYSLLF 376
QQN V ERKH+H+++ R+L +H P +WGD IL A YLI R+P+ +L ++ P+ +L
Sbjct: 559 QQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLINRLPAPILEDKCPFEVLT 618
Query: 377 PKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGYRCYSPSAHRFYV 436
P Y ++VFG C+A DR K S RA C F+GY KGY+ H V
Sbjct: 619 KTVPTY-DHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLETHSIIV 677
Query: 437 SKDVTFFEDR-PFFAS 451
S+ V F E+ PF S
Sbjct: 678 SRHVVFHEELFPFLGS 693
>At1g36620 hypothetical protein
Length = 1152
Score = 259 bits (662), Expect = 6e-69
Identities = 165/472 (34%), Positives = 241/472 (50%), Gaps = 50/472 (10%)
Query: 89 SLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQDRSTGKTIGT*FES*GLYY 148
++ L +VLF+ LIS+++L + L+C F+ +IQDR++ IG ES G+Y+
Sbjct: 432 NMKLTHVLFVPDLSCTLISVARLLRELHCFAIFTDKVCVIQDRTSKMLIGVGTESNGVYH 491
Query: 149 LH-----SHPSTICGVSASPDIIHCRLGHPSLDKLKVLVPHL-------SHLKSLDCESC 196
L + + + + + H RLGHPS L ++P L S LK++ C+ C
Sbjct: 492 LQRAEVVATSANVVKWKTNKALWHMRLGHPSSKVLSSVLPSLEDFDSCSSDLKTI-CDVC 550
Query: 197 QLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFIDDFSRCTWITLL 256
K R SF NK F+ IH DVWGP + +S+ G Y++T +DD SR WI L+
Sbjct: 551 VRAKQTRASFSESFNKAEEC-FSFIHYDVWGPYKHASSCGAHYFLTIVDDHSRAVWIHLM 609
Query: 257 KDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHGIIHQSSCPHTP 316
+S + Q F + QF K ++ +RS+N + S S+ A GI+HQ SC +T
Sbjct: 610 LAKSEVASLLQQFIAMASRQFNKQVKTVRSNNGTEFMS--LKSYFAERGIVHQISCVYTH 667
Query: 317 QQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSSVLGNEIPYSLLF 376
QQNG ERKHRH+++ R+LL A P FW +++L A YLI R P+ +L + PY +L+
Sbjct: 668 QQNGRVERKHRHILNVARSLLFQAELPISFWEESVLTAAYLINRTPTPILDGKTPYKILY 727
Query: 377 PKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGYRCYSPSAHRFYV 436
+ P Y LRVFGS CFA + DK R KC+F+GY QKG+R Y + F+V
Sbjct: 728 SQPPSY-ASLRVFGSLCFARKHTGRLDKFQERGRKCIFVGYPHGQKGWRIYDIESQIFFV 786
Query: 437 SKDVTFFEDRPFFASPTTSGSTTSTTSTTDVTTSHVMPIPLFEPFVSTQNPPQSQGNPEF 496
S+DV F ED FA + +S + V+P P+ P
Sbjct: 787 SRDVVFQEDIFPFADKKNKDTFSSPAA--------VIPSPIL---------------PYD 823
Query: 497 RQYGITYELRHVEA--PETAPIDSNDSTPKTPATNSSDSGIVPVSSPAAVPP 546
++ Y++ V A P A ID NDS P +P I+ + AA PP
Sbjct: 824 DEFLDIYQIGDVPATNPLPAIIDVNDSPPSSP--------IITATPAAASPP 867
>At2g23330 putative retroelement pol polyprotein
Length = 1496
Score = 258 bits (659), Expect = 1e-68
Identities = 167/487 (34%), Positives = 242/487 (49%), Gaps = 31/487 (6%)
Query: 68 ITDANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFL 127
+T +G +Q T G S L+ VLF+ LIS+SKL + + F+
Sbjct: 399 VTKPDGKASQATKCGTLLLHDSYKLHDVLFVPDFDCTLISVSKLLKQTSSIAIFTDTFCF 458
Query: 128 IQDRSTGKTIGT*FES*GLYY--------LHSHPSTICGVSASPDIIHCRLGHPSLDKLK 179
+QDR IG E G+YY +H S + S D+ H RLGHPS L
Sbjct: 459 LQDRFLRTLIGAGEEREGVYYFTGVLAPRVHKASSDF---AISGDLWHRRLGHPSTSVLL 515
Query: 180 VLVPHLSHLKSLD----CESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTL 235
L + D C++C K R FP +N ++M F++IH DVWGP R ST
Sbjct: 516 SLPECNRSSQGFDKIDSCDTCFRSKQTREVFPI-SNNKTMECFSLIHGDVWGPYRTPSTT 574
Query: 236 GYKYYVTFIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFST 295
G Y++T +DD+SR W L+ ++ + + FC+ + QFGK ++ R+DN +
Sbjct: 575 GAVYFLTLVDDYSRSVWTYLMSSKTEVSQLIKNFCAMSERQFGKQVKAFRTDNGTEFMCL 634
Query: 296 SFNSFMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIAC 355
+ + +HGI+HQ+SC TPQQNG ERKHRH+++ R L + P +FWG++IL A
Sbjct: 635 T--PYFQTHGILHQTSCVDTPQQNGRVERKHRHILNVARACLFQGNLPVKFWGESILTAT 692
Query: 356 YLITRMPSSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFL 415
+LI R PS+VL + PY LLF + P Y + LR FG C+AH ++DK ++R+ KCVF+
Sbjct: 693 HLINRTPSAVLKGKTPYELLFGERPSYDM-LRSFGCLCYAHIRPRNKDKFTSRSRKCVFI 751
Query: 416 GYSKTQKGYRCYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTSTTSTTDVTTSHVMPI 475
GY +K +R Y + + S+DV F ED +A+ T S + V +PI
Sbjct: 752 GYPHGKKAWRVYDLETGKIFASRDVRFHEDIYPYATATQSNVPLPPPTPPMVNDDWFLPI 811
Query: 476 PLFEPFVSTQNPPQSQGNPEFRQYGITYELRHVEAPETAPIDSNDSTPKTPATNSSDSGI 535
V + N S + + I R ID + ST P S I
Sbjct: 812 ---STQVDSTNVDSSSSSSPAQSGSIDQPPR--------SIDQSPSTSTNPVPEEIGS-I 859
Query: 536 VPVSSPA 542
VP SSP+
Sbjct: 860 VPSSSPS 866
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 251 bits (642), Expect = 1e-66
Identities = 162/458 (35%), Positives = 234/458 (50%), Gaps = 19/458 (4%)
Query: 73 GYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQDRS 132
G +++G+G + L VLFI NLISIS LT L + F IQD +
Sbjct: 475 GPNVRISGVGTVLINKDIILQNVLFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLT 534
Query: 133 TGKTIGT*FES*GLYYLHSHPSTICGVSASPDII--HCRLGHPSLDKLKVLVPHLS---- 186
G T+G LY L + I V+A D+ H RLGHPS +L L L
Sbjct: 535 KGLTLGEGKRIGNLYVLDTQSPAI-SVNAVVDVSVWHKRLGHPSFSRLDSLSEVLGTTRH 593
Query: 187 -HLKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFID 245
+ KS C C L K ++SFPS AN S F ++H DVWGP V + GYKY++T +D
Sbjct: 594 KNKKSAYCHVCHLAKQKKLSFPS-ANNICNSTFELLHIDVWGPFSVETVEGYKYFLTIVD 652
Query: 246 DFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHG 305
D SR TWI LLK +S + F F ++ Q+ ++ +RSDNAK +F F + G
Sbjct: 653 DHSRATWIYLLKSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAK---ELAFTEFYKAKG 709
Query: 306 IIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSSV 365
I+ SCP TP+QN V ERKH+H+++ R L+ ++ +WGD +L A +LI R PS++
Sbjct: 710 IVSFHSCPETPEQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSAL 769
Query: 366 LGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGYR 425
L N+ P+ +L K P Y L+ FG C++ S R K R+ CVFLGY KGY+
Sbjct: 770 LSNKTPFEVLTGKLPDY-SQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYK 828
Query: 426 CYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTSTTSTTDVTTSHVMPIPLFEPFVSTQ 485
++ ++S++V F E+ AS S S T+ +DV T + P+ S
Sbjct: 829 LLDLESNVVHISRNVEFHEELFPLAS-----SQQSATTASDVFTP-MDPLSSGNSITSHL 882
Query: 486 NPPQSQGNPEFRQYGITYELRHVEAPETAPIDSNDSTP 523
PQ + + + IT H++ ++ +DS P
Sbjct: 883 PSPQISPSTQISKRRITKFPAHLQDYHCYFVNKDDSHP 920
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 246 bits (628), Expect = 5e-65
Identities = 139/373 (37%), Positives = 207/373 (55%), Gaps = 20/373 (5%)
Query: 90 LSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQDRSTGKTIGT*FES*GLYYL 149
+ LN VL + +L+S+SKL C + F ++ I D T K + T GLY L
Sbjct: 376 IPLNEVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGPRRNGLYVL 435
Query: 150 HSHPSTIC----GVSASPDIIHCRLGHPSLDKLKVLVPHLSHLKSLD---------CESC 196
+ +A+ ++ H RLGH + L+ HL + K++ CE C
Sbjct: 436 ENQEFVALYSNRQCAATEEVWHHRLGHANSKALQ----HLQNSKAIQINKSRTSPVCEPC 491
Query: 197 QLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFIDDFSRCTWITLL 256
Q+GK R+ F ++ R + P + IH D+WGPS V S G KYY F+DD+SR +W L
Sbjct: 492 QMGKSSRLPFLI-SDSRVLHPLDRIHCDLWGPSPVVSNQGLKYYAIFVDDYSRYSWFYPL 550
Query: 257 KDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHGIIHQSSCPHTP 316
++S F +F ++ Q I++ +SD + S + ++ HGI H+ SCP+TP
Sbjct: 551 HNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSEHGIHHRISCPYTP 610
Query: 317 QQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSSVLGNEIPYSLLF 376
QQNG+AERKHRHLV+ ++L ++H P +FW ++ A Y+I R+PSSVL N PY LF
Sbjct: 611 QQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANYIINRLPSSVLKNLSPYEALF 670
Query: 377 PKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGYRCYSPSAHRFYV 436
+ P Y LRVFGS C+ ++K R+++CVFLGY+ KGYRC+ P + Y+
Sbjct: 671 GEKPDY-SSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYNSQYKGYRCFYPPTGKVYI 729
Query: 437 SKDVTFFE-DRPF 448
S++V F E + PF
Sbjct: 730 SRNVIFNESELPF 742
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 244 bits (623), Expect = 2e-64
Identities = 151/435 (34%), Positives = 220/435 (49%), Gaps = 31/435 (7%)
Query: 73 GYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQDRS 132
G +++G+G + L VLFI NLISIS LT + + F +S IQD
Sbjct: 464 GPTVKISGVGTLKLNDDILLKNVLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLI 523
Query: 133 TGKTIGT*FES*GLYYLHSHPSTICGVSASPDII--HCRLGHPSLDKLKVLVPHLSHLKS 190
G+ +G LY L +I V+A DI H RLGH SL +L + L +
Sbjct: 524 KGRMLGQGRRVANLYLLDVGDQSI-SVNAVVDISMWHRRLGHASLQRLDAISDSLGTTRH 582
Query: 191 LD-----CESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFID 245
+ C C L K ++SFP+ +NK F+++H DVWGP V + GYKY++T +D
Sbjct: 583 KNKGSDFCHVCHLAKQRKLSFPT-SNKVCKEIFDLLHIDVWGPFSVETVEGYKYFLTIVD 641
Query: 246 DFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHG 305
D SR TW+ LLK +S + F F ++ Q+ ++ +RSDNA F SF A G
Sbjct: 642 DHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDNAP---ELKFTSFYAEKG 698
Query: 306 IIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSSV 365
I+ SCP TP+QN V ERKH+H+++ R L+ + P WGD +L A +LI R PS +
Sbjct: 699 IVSFHSCPETPEQNSVVERKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQL 758
Query: 366 LGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGYR 425
L N+ PY +L P+Y LR FG C++ R K R+ C+FLGY KGY+
Sbjct: 759 LMNKTPYEILTGTAPVY-EQLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYK 817
Query: 426 CYSPSAHRFYVSKDVTFFED------RPFFAS---------PTTSGSTTSTTSTTDVTTS 470
++ ++S++V F E+ P S P +SG + TT + S
Sbjct: 818 LMDLESNTVFISRNVQFHEEVFPLAKNPGSESSLKLFTPMVPVSSGIISDTTHSPSSLPS 877
Query: 471 HVMPIPLFEPFVSTQ 485
+ +P P +S+Q
Sbjct: 878 QISDLP---PQISSQ 889
>At2g24660 putative retroelement pol polyprotein
Length = 1156
Score = 241 bits (615), Expect = 2e-63
Identities = 142/360 (39%), Positives = 195/360 (53%), Gaps = 10/360 (2%)
Query: 107 SISKLTQSLNCSITFSSDSFLIQDRSTGKTIGT*FES*GLYYLHSHPST---ICGVSASP 163
SIS + + ++T + DR + IG+ E G+YYL + VS+
Sbjct: 29 SISSEHRLVTLTLTHENLKACKLDRFSRTLIGSGEERDGVYYLTDVATAKIHTAKVSSDQ 88
Query: 164 DIIHCRLGHPS---LDKLKVLVPHLSHLKSLDCESCQLGKHVRVSFPSRANKRSMSPFNI 220
+ H RLGHPS L L VL + S C+ C K R FP NK S+ F++
Sbjct: 89 ALWHQRLGHPSFSVLSSLPVLTSSSLSVGSRSCDVCFRAKQTREVFPVSTNK-SIECFSL 147
Query: 221 IHSDVWGPSRVSSTLGYKYYVTFIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKT 280
IH DVWGP RV S+ G Y++T +DDFSR W LL +S + F + QFGK+
Sbjct: 148 IHCDVWGPYRVPSSCGAVYFLTIVDDFSRAVWTYLLLAKSEVRTVLTNFLVYTEKQFGKS 207
Query: 281 IRILRSDNAK*YFSTSFNSFMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINA 340
+++LRSDN + + S+ HGI+HQ+SC TPQQNG ERKHRH+++ R +L A
Sbjct: 208 VKVLRSDNGTEFMCLA--SYFREHGIVHQTSCVGTPQQNGRVERKHRHILNVARAILFQA 265
Query: 341 HAPFRFWGDAILIACYLITRMPSSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSP 400
P +FWG+A+L A YLI R P+S+ PY +L P Y LRVFGS C+ H S
Sbjct: 266 SLPIQFWGEAVLTAAYLINRTPTSLHNGLSPYEILHNSKPNY-EHLRVFGSACYVHRASR 324
Query: 401 DRDKLSARAVKCVFLGYSKTQKGYRCYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTS 460
D+DK R+ CVF+GY QKG++ + F VS+DV F ED +A+ T + S
Sbjct: 325 DKDKFGERSRLCVFIGYPFAQKGWKVFDMEKKEFLVSRDVVFREDVFPYAATNTDHVSAS 384
>At2g14930 pseudogene
Length = 1149
Score = 239 bits (610), Expect = 6e-63
Identities = 167/471 (35%), Positives = 240/471 (50%), Gaps = 37/471 (7%)
Query: 71 ANGYKAQVTGIGQASPLPSLSLNY----VLFISGSPFNLISISKLTQSLNCSITFSSDSF 126
++G +T IG A+ LPS S N VL +L+S+SKLT+ CS TF +D
Sbjct: 346 SDGNFLPITHIGSAN-LPSTSGNLPLKDVLVCPNIAKSLLSVSKLTKDYPCSFTFDADGV 404
Query: 127 LIQDRSTGKTIGT*FE-S*GLYYLHSHPSTIC----GVSASPDIIHCRLGHPSLDKLKVL 181
L++D++T K + S GLY L + + V A+ ++ H RLGHP+ L++L
Sbjct: 405 LVKDKATCKVLTKGSSTSEGLYKLENPKFQMFYSTRQVKATDEVWHMRLGHPNPQVLQLL 464
Query: 182 VP----HLSHLKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGY 237
++ S CESC+LGK R+ F + ++ + P +H D+WGP+ VSS G+
Sbjct: 465 ANKKAIQINKSTSKMCESCRLGKSSRLPFIA-SDFIASRPLERVHCDLWGPAPVSSIQGF 523
Query: 238 KYYVTFIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSF 297
+YYV FID+ SR W LK +S F F S ++ I +SD + S F
Sbjct: 524 QYYVIFIDNRSRFCWFYPLKHKSDFCSLFMKFQSFVENLLQTKIGTFQSDGGGEFTSNRF 583
Query: 298 NSFMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYL 357
+ GI H SCPHTPQQNG+AERKHR L + TL+ + AP RFW +A A +L
Sbjct: 584 LQHLQESGIQHYISCPHTPQQNGLAERKHRQLTERGLTLMFQSKAPQRFWVEAFFTANFL 643
Query: 358 ITRMPSSVL-GNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLG 416
+P+S L + PY +LF K P Y LR FG CF + R+K R++KC+FLG
Sbjct: 644 SNLLPTSALDSSTTPYQVLFGKAPDYSA-LRTFGCACFPTLRAYARNKFDPRSLKCIFLG 702
Query: 417 YSKTQKGYRCYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTSTTSTTDVTTSHVMPIP 476
Y++ KGYRC+ P +R Y+S+ V F E F TS H P P
Sbjct: 703 YTEKYKGYRCFFPPTNRVYLSRHVLFDESSFPFIDTYTS-------------LQHPSPTP 749
Query: 477 LFE----PFVSTQNPPQSQGNPEFRQYGITYELRHVEAPETAPIDSNDSTP 523
+F+ F S+ +P ++ F G + + + A +T PI S P
Sbjct: 750 MFDAWLKSFPSSSSPLENDQTAGFNS-GASVPV--ITAQQTQPILSLKDGP 797
>At1g53810
Length = 1522
Score = 239 bits (609), Expect = 8e-63
Identities = 146/395 (36%), Positives = 203/395 (50%), Gaps = 13/395 (3%)
Query: 68 ITDANGYKAQVTGIGQ-ASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSF 126
+ D N TG G AS + L VL +L+S+SKLT CS+ F +DS
Sbjct: 357 VADGNFLPITHTGSGSIASSSGKIPLKEVLVCPDIVKSLLSVSKLTSDYPCSVEFDADSV 416
Query: 127 LIQDRSTGKTIGT*FES*GLYYLHSHPSTICGV----SASPDIIHCRLGHPSLDKLKVLV 182
I D++T K + GLY L + SAS ++ H RLGH + + L L
Sbjct: 417 RINDKATKKLLVMGRNRDGLYSLEEPKLQVLYSTRQNSASSEVWHRRLGHANAEVLHQLA 476
Query: 183 PH-----LSHLKSLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGY 237
++ + CE+C LGK R+ F S P IH D+WGPS SS G+
Sbjct: 477 SSKSIIIINKVVKTVCEACHLGKSTRLPFMLSTFNASR-PLERIHCDLWGPSPTSSVQGF 535
Query: 238 KYYVTFIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSF 297
+YYV FID +SR TW LK +S F F F ++ Q G I+I + D + S+ F
Sbjct: 536 RYYVVFIDHYSRFTWFYPLKLKSDFFSTFVMFQKLVENQLGHKIKIFQCDGGGEFISSQF 595
Query: 298 NSFMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYL 357
+ HGI SCP+TPQQNG+AERKHRH+V+ +++ + P ++W ++ A ++
Sbjct: 596 LKHLQDHGIQQNMSCPYTPQQNGMAERKHRHIVELGLSMIFQSKLPLKYWLESFFTANFV 655
Query: 358 ITRMPSSVL-GNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLG 416
I +P+S L NE PY L+ K P Y LRVFG C+ K R++KCVFLG
Sbjct: 656 INLLPTSSLDNNESPYQKLYGKAPEYSA-LRVFGCACYPTLRDYASTKFDPRSLKCVFLG 714
Query: 417 YSKTQKGYRCYSPSAHRFYVSKDVTFFEDRPFFAS 451
Y++ KGYRC P R Y+S+ V F E+ F S
Sbjct: 715 YNEKYKGYRCLYPPTGRIYISRHVVFDENTHPFES 749
>At4g22040 LTR retrotransposon like protein
Length = 1109
Score = 238 bits (608), Expect = 1e-62
Identities = 146/420 (34%), Positives = 217/420 (50%), Gaps = 13/420 (3%)
Query: 71 ANGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQD 130
A+G K G L L V ++ +LIS+ ++ +C + + +IQD
Sbjct: 194 ADGNKRVAVSEGTVRLGSHLILKSVFYVKELESDLISVGQMMDENHCVVQLADHFLVIQD 253
Query: 131 RSTGKTIGT*FES*GLYYLHSHPSTIC---GVSASPDIIHCRLGHPSLDKLKVLVPH--L 185
R+T G G + + V A D+ H RLGH S DK+ L+P L
Sbjct: 254 RTTRMVTGIGKRENGSFCFRGMENAAAVHTSVKAPFDLWHRRLGHAS-DKIVNLLPRELL 312
Query: 186 SHLKSL---DCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVT 242
S K + C++C K R +FP R N RSM F +IH DVWGP R S G +Y++T
Sbjct: 313 SSGKEILENVCDTCMRAKQTRDTFPLRDN-RSMDSFQLIHCDVWGPYRTPSYSGARYFLT 371
Query: 243 FIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMA 302
+DD+SR W+ L+ D+S + F + ++ QF I+ +RSDN + +
Sbjct: 372 IVDDYSRGVWVYLMTDKSETQKHLKDFMALVERQFDTEIKTVRSDNGTEFLC--MREYFL 429
Query: 303 SHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMP 362
GI H++SC TP QNG ERKHRH+++ R L ++ P +FWG+ IL A YLI R P
Sbjct: 430 HKGIAHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLINRTP 489
Query: 363 SSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQK 422
S +L + PY +L+ P Y LRVFGS C+AH+ + DK +AR+ +CVF+GY QK
Sbjct: 490 SMLLQGKSPYEMLYKTAPKY-SHLRVFGSLCYAHNQNHKGDKFAARSRRCVFVGYPHGQK 548
Query: 423 GYRCYSPSAHRFYVSKDVTFFEDRPFFASPTTSGSTTSTTSTTDVTTSHVMPIPLFEPFV 482
G+R + +F+VS+DV F E ++ + + T+S + T+ + P E V
Sbjct: 549 GWRLFDLEEQKFFVSRDVIFQETEFPYSKMSCNRFTSSHKAFLAAVTAGMEPTTYNEAMV 608
>At1g26990 polyprotein, putative
Length = 1436
Score = 237 bits (604), Expect = 3e-62
Identities = 144/404 (35%), Positives = 205/404 (50%), Gaps = 23/404 (5%)
Query: 72 NGYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQDR 131
NG+ ++ G G +LSL+ VLFI FNL+S+S LT++L ++F+SD +IQ
Sbjct: 453 NGHTVKIEGTGFIQLTDALSLHNVLFIPEFKFNLLSVSVLTKTLQSKVSFTSDECMIQAL 512
Query: 132 STGKTIGT*FES*GLYYLHSHPS----------TICG-VSASPDIIHCRLGHPSLDKLKV 180
+ +G + LY L+ S ++C V ++ H RLGHPS K+
Sbjct: 513 TKELMLGKGSQVGNLYILNLDKSLVDVSSFPGKSVCSSVKNESEMWHKRLGHPSFAKIDT 572
Query: 181 LVPHLSHLK------SLDCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSST 234
L L K S C C L K + F S + R + F ++H D WGP V +
Sbjct: 573 LSDVLMLPKQKINKDSSHCHVCHLSKQKHLPFKSVNHIREKA-FELVHIDTWGPFSVPTV 631
Query: 235 LGYKYYVTFIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFS 294
Y+Y++T +DDFSR TWI LLK +S + F +F ++TQ+ + +RSDNA
Sbjct: 632 DSYRYFLTIVDDFSRATWIYLLKQKSDVLTVFPSFLKMVETQYHTKVCSVRSDNAH---E 688
Query: 295 TSFNSFMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIA 354
FN A GI CP TP+QN V ERKH+HL++ R L+ + P +WGD +L A
Sbjct: 689 LKFNELFAKEGIKADHPCPETPEQNFVVERKHQHLLNVARALMFQSGIPLEYWGDCVLTA 748
Query: 355 CYLITRMPSSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVF 414
+LI R+ S V+ NE PY L P Y L+ FG C+ R K RA C+F
Sbjct: 749 VFLINRLLSPVINNETPYERLTKGKPDY-SSLKAFGCLCYCSTSPKSRTKFDPRAKACIF 807
Query: 415 LGYSKTQKGYRCYSPSAHRFYVSKDVTFFED-RPFFASPTTSGS 457
LGY KGY+ + +S+ V F+ED PF +S T +
Sbjct: 808 LGYPMGYKGYKLLDIETYSVSISRHVIFYEDIFPFASSNITDAA 851
>At4g10690 retrotransposon like protein
Length = 1515
Score = 233 bits (595), Expect = 3e-61
Identities = 160/482 (33%), Positives = 242/482 (50%), Gaps = 30/482 (6%)
Query: 89 SLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQDRSTGKTIGT*FES*GLYY 148
+L L VL G +L+S+SKLT CS TF SDS +I+D+ T + + + GLY
Sbjct: 377 TLPLEDVLVCPGITKSLLSVSKLTDDYPCSFTFDSDSVVIKDKRTQQLLTQGNKHKGLYV 436
Query: 149 LHSHPS----TICGVSASPDIIHCRLGHPSLDKLKVLVPH----LSHLKSLDCESCQLGK 200
L P + S+ ++ H RLGHP+ + L+ L+ ++ S CE+CQ+GK
Sbjct: 437 LKDVPFQTYYSTRQQSSDDEVWHQRLGHPNKEVLQHLIKTKAIVVNKTSSNMCEACQMGK 496
Query: 201 HVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFIDDFSRCTWITLLKDRS 260
R+ F + + S P IH D+WGP+ V+S G++YYV FID++SR TW LK +S
Sbjct: 497 VCRLPFVA-SEFVSSRPLERIHCDLWGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKS 555
Query: 261 *LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHGIIHQSSCPHTPQQNG 320
F F F ++ Q+ I + + D + S F + +AS GI SCPHTPQQNG
Sbjct: 556 DFFSVFVLFQQLVENQYQHKIAMFQCDGGGEFVSYKFVAHLASCGIKQLISCPHTPQQNG 615
Query: 321 VAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSSVLG-NEIPYSLLFPKD 379
+AER+HR+L + +L+ ++ P + W +A + +L +PSS L N+ PY +L
Sbjct: 616 IAERRHRYLTELGLSLMFHSKVPHKLWVEAFFTSNFLSNLLPSSTLSDNKSPYEMLHGTP 675
Query: 380 PLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGYRCYSPSAHRFYVSKD 439
P+Y LRVFGS C+ + ++K +++ CVFLGY+ KGYRC P + Y+ +
Sbjct: 676 PVYTA-LRVFGSACYPYLRPYAKNKFDPKSLLCVFLGYNNKYKGYRCLHPPTGKVYICRH 734
Query: 440 VTFFEDRPFFAS------PTTSGST---------TSTTSTTDVTTSHVMPIPLFEPFVST 484
V F++R F S T SGS +ST + + +++V I VS+
Sbjct: 735 V-LFDERKFPYSDIYSQFQTISGSPLFTAWQKGFSSTALSRETPSTNVEDIIFPSATVSS 793
Query: 485 QNPPQSQGN--PEFRQYGITYELRHVEAPETAPIDSNDSTPKTPATNSSDSGIVPVSSPA 542
P N + H +PI S S P P ++SD S
Sbjct: 794 SVPTGCAPNIAETATAPDVDVAAAHDMVVPPSPITST-SLPTQPEESTSDQNHYSTDSET 852
Query: 543 AV 544
A+
Sbjct: 853 AI 854
>At2g15870 putative retroelement pol polyprotein
Length = 1264
Score = 233 bits (593), Expect = 6e-61
Identities = 150/442 (33%), Positives = 221/442 (49%), Gaps = 18/442 (4%)
Query: 91 SLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQDRSTGKTIGT*FES*GLYYLH 150
SLN VLFI NLISIS LT + + F +F IQD G+ +G LY +
Sbjct: 342 SLN-VLFIPEFRLNLISISSLTDDIGSRVIFDQHAFEIQDLIKGRMLGHGRRVANLYVMD 400
Query: 151 SHPSTICGVSASPDII--HCRLGHPSLDKLKVLVPHLSHLKSLD-----CESCQLGKHVR 203
+ + V+A DI H RL H SL +L V+ L K + C C L KH +
Sbjct: 401 VEDTNV-SVNAVVDISTWHNRLRHASLQRLDVISESLGTTKHKNKGSDYCHVCHLAKHRK 459
Query: 204 VSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFIDDFSRCTWITLLKDRS*LF 263
+SFPS+ N + F ++H D+WGP V + GY+Y++T +DD SR TWI LLK +S +
Sbjct: 460 LSFPSQNNVCN-EIFEMLHIDIWGPFSVETVDGYQYFLTIVDDHSRATWIYLLKTKSEVL 518
Query: 264 GAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHGIIHQSSCPHTPQQNGVAE 323
F F ++ Q+ ++ +RSDNA F S GI+ SCP TP+QN V E
Sbjct: 519 TIFHDFIQQVENQYKVKVKAVRSDNAP---ELRFTSLYQRKGIMAFHSCPETPEQNSVVE 575
Query: 324 RKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSSVLGNEIPYSLLFPKDPLYV 383
RKH+H+++ R L+ + P WG+ +L A +LI R PS +L N+ PY +L P Y
Sbjct: 576 RKHQHILNVARALMFQSQVPLFLWGECVLTAVFLINRTPSQLLSNKTPYEILSGTAPQY- 634
Query: 384 VPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGYRCYSPSAHRFYVSKDVTFF 443
LR FG C++ R K R+ C+FLGYS KGY+ ++ ++S++V F
Sbjct: 635 GQLRTFGCLCYSSTSPKQRHKFQPRSKACIFLGYSSGYKGYKLMDLESNAIFISRNVVFL 694
Query: 444 EDRPFFASPTTSGSTTSTTSTTDVTTSHVMPIPLFEPFVS--TQNPPQ--SQGNPEFRQY 499
E+ A S + + + S + F S + PPQ SQ + + +
Sbjct: 695 EEVFPLAGTKKSADSLKLCTPLVLVPSGIQQQSSFSSLSSQISDLPPQISSQRDRKPPTH 754
Query: 500 GITYELRHVEAPETAPIDSNDS 521
Y ++++ + PI S S
Sbjct: 755 LSDYVCNNMQSDQKYPISSTIS 776
>At4g14460 retrovirus-related like polyprotein
Length = 1489
Score = 229 bits (583), Expect = 9e-60
Identities = 141/410 (34%), Positives = 209/410 (50%), Gaps = 50/410 (12%)
Query: 90 LSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQDRSTGKTIGT*FES*GLYYL 149
L L+ VL + FNL+S+S L ++++CS F D LIQ+ S G IG LY L
Sbjct: 515 LILHNVLHVPDFKFNLMSVSSLVKTISCSAHFYVDCCLIQELSQGLMIGRGRLYHNLYIL 574
Query: 150 HSH---PSTIC--------GVSASPDIIHCRLGHPS---LDKLKVLVPHLSHLKSLDCES 195
+ PST V + H RLGHPS L KLK L ++SH
Sbjct: 575 ETENTSPSTSTPAACLFTGSVLNDGHLWHQRLGHPSSVVLQKLKRLA-YISH-------- 625
Query: 196 CQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFIDDFSRCTWITL 255
N + +PF+++H D+WGP + S G++Y++T +DD +R TW+ +
Sbjct: 626 ---------------NNLASNPFDLVHLDIWGPFSIESIEGFRYFLTVVDDCTRTTWVYM 670
Query: 256 LKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHGIIHQSSCPHT 315
L+++ + F F + TQF I+ +RSDNA F + HG++H SC +T
Sbjct: 671 LRNKKDVSSVFPEFIKLVSTQFNAKIKAIRSDNAP---ELGFTEIVKEHGMLHHFSCAYT 727
Query: 316 PQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSSVLGNEIPYSLL 375
PQQN V ERKH+H+++ R LL ++ P ++W D + A +LI R+PS +L N+ PY L+
Sbjct: 728 PQQNSVVERKHQHILNVARALLFQSNIPMQYWSDCVTTAVFLINRLPSPLLNNKSPYELI 787
Query: 376 FPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGYRCYSPSAHRFY 435
K P Y + L+ FG CF + +R K + RA CVFLGY KGY+ +H
Sbjct: 788 LNKQPDYSL-LKNFGCLCFVSTNAHERTKFTPRARACVFLGYPSGYKGYKVLDLESHSVT 846
Query: 436 VSKDVTFFED-RPFFASPTTSGSTTSTTSTTDVTTSHVMPIPLFEPFVST 484
VS++V F E PF S + D+ + ++P+P FV T
Sbjct: 847 VSRNVVFKEHVFPFKTSELLN-------KAVDMFPNSILPLPAPLHFVET 889
>At1g47650 hypothetical protein
Length = 1409
Score = 225 bits (574), Expect = 9e-59
Identities = 138/405 (34%), Positives = 199/405 (49%), Gaps = 28/405 (6%)
Query: 73 GYKAQVTGIGQASPLPSLSLNYVLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQDRS 132
G +++G+G + L +LFI NLISIS LT + + F S IQD
Sbjct: 365 GPTVRISGVGTLRLNDDILLKNILFIPEFRLNLISISSLTDDIGSRVIFDKTSCEIQDPI 424
Query: 133 TGKTIGT*FES*GLYYLHSHPSTICGVSASPDII--HCRLGHPSLDKLKVLVPHLSHLKS 190
+ +G LY L I V+A DI H RLGH SL +L V+ L K
Sbjct: 425 KARMLGQGRRIANLYVLDIE-DPIVSVNAVVDISMWHRRLGHASLQRLDVISDSLGTTKP 483
Query: 191 LD-----CESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFID 245
+ C C L K ++ FPS+ NK F+++H D+WGP V + GYKY++T +D
Sbjct: 484 KNKGSDYCHVCHLAKQRKLPFPSQ-NKVCNEIFDLLHIDIWGPFSVETVDGYKYFLTIVD 542
Query: 246 DFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHG 305
D SR TWI LL+++S + F F ++ Q+ ++ +RSDNA F S G
Sbjct: 543 DHSRATWIYLLRNKSEVLTVFPAFIEQVENQYKVRVKAVRSDNAP---ELKFTSLYQQKG 599
Query: 306 IIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSSV 365
I+ SCP TP+QN V ERKH+H+++ +R L+ + P WGD +L A +LI R PS +
Sbjct: 600 IVSFHSCPETPEQNLVVERKHQHILNVSRALMFQSQVPLSLWGDCVLTAVFLINRTPSQL 659
Query: 366 LGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGYR 425
L N+ PY +L P Y + R K R+ CVFLGY KGY+
Sbjct: 660 LSNKTPYEILTGTVPFY---------------FAKKRHKFQPRSKACVFLGYPAGYKGYK 704
Query: 426 CYSPSAHRFYVSKDVTFFED-RPFFASPTTSGSTTSTTSTTDVTT 469
+H ++S++V F E+ P P + S T V++
Sbjct: 705 LMDLESHTVFISRNVVFHEEVFPLAVDPKSESSLKLFTPMVPVSS 749
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 224 bits (571), Expect = 2e-58
Identities = 130/359 (36%), Positives = 192/359 (53%), Gaps = 15/359 (4%)
Query: 95 VLFISGSPFNLISISKLTQSLNCSITFSSDSFLIQDRSTGKTIGT*FES*GLYYLHSHP- 153
V ++ +LISI +L C + S ++QDR++ +G G ++ S
Sbjct: 318 VFYVEEFQSDLISIGQLMDENRCVLQMSDRFLVVQDRTSRMVMGAGRRVGGTFHFRSTEI 377
Query: 154 --STICGVSASPDIIHCRLGHPSLDKLKVLVPHLS------HLKSLDCESCQLGKHVRVS 205
S + ++ H R+GHP+ ++ L+P S HL C+ C K R S
Sbjct: 378 AASVTVKEEKNYELWHSRMGHPAA-RVVSLIPESSVSVSSTHLNKA-CDVCHRAKQTRNS 435
Query: 206 FPSRANKRSMSPFNIIHSDVWGPSRVSSTLGYKYYVTFIDDFSRCTWITLLKDRS*LFGA 265
FP NK ++ F +I+ D+WGP R S G +Y++T IDD+SR W+ LL D+S
Sbjct: 436 FPLSINK-TLRIFELIYCDLWGPYRTPSHTGARYFLTIIDDYSRGVWLYLLNDKSEAPCH 494
Query: 266 FQTFCS*IKTQFGKTIRILRSDNAK*YFSTSFNSFMASHGIIHQSSCPHTPQQNGVAERK 325
+ F + QF I+ +RSDN + + F G+IH+ SC TP++N ERK
Sbjct: 495 LKNFFAMTDRQFNVKIKTVRSDNGTEFLCLT--KFFQEQGVIHERSCVATPERNDRVERK 552
Query: 326 HRHLVDTTRTLLINAHAPFRFWGDAILIACYLITRMPSSVLGNEIPYSLLFPKDPLYVVP 385
HRHL++ R L A+ P +FWG+ +L A YLI R PSSVL + PY L K P +
Sbjct: 553 HRHLLNVARALRFQANLPIQFWGECVLTAAYLINRTPSSVLNDSTPYERLHKKQPRF-DH 611
Query: 386 LRVFGSTCFAHDLSPDRDKLSARAVKCVFLGYSKTQKGYRCYSPSAHRFYVSKDVTFFE 444
LRVFGS C+AH+ + DK + R+ +CVF+GY QKG+R + + F+VS+DV F E
Sbjct: 612 LRVFGSLCYAHNRNRGGDKFAERSRRCVFVGYPHGQKGWRLFDLEQNEFFVSRDVVFSE 670
>At1g44510 polyprotein, putative
Length = 1459
Score = 223 bits (569), Expect = 4e-58
Identities = 172/536 (32%), Positives = 256/536 (47%), Gaps = 59/536 (11%)
Query: 65 YLNITDANGYKAQVTGIGQASPLPS----LSLNYVLFISGSPFNLISISKLTQSLNCSIT 120
Y+ I D G + TG ++ LPS L+L+ VL++ NLIS+ +L + S+
Sbjct: 365 YVMIADGTGLTIKQTG---STFLPSQNRDLALHKVLYVPDIRKNLISVYRLCNTNQVSVE 421
Query: 121 FSSDSFLIQDRSTGKTIGT*FES*GLYY--LHSHPSTICGVSASPDII----HCRLGHPS 174
F SF ++D +TG + LY + + P+T S SP H RLGHPS
Sbjct: 422 FFPASFQVKDLNTGTLLLQGRTKDDLYEWPVTNPPATALFTSPSPKTTLSSWHSRLGHPS 481
Query: 175 LDKLKVLVPHLSHLKSL------DCESCQLGKHVRVSFPSRANKRSMSPFNIIHSDVWGP 228
L L+ S S+ C C + K ++ F + ++ S SP I +DVW
Sbjct: 482 ASILNTLLSKFSLPVSVASSNKTSCSDCLINKSHKLPFAT-SSIHSSSPLEYIFTDVW-T 539
Query: 229 SRVSSTLGYKYYVTFIDDFSRCTWITLLKDRS*LFGAFQTFCS*IKTQFGKTIRILRSDN 288
S + S YKYY+ +D ++R TW+ L+ +S + F F + ++ +F IR L SDN
Sbjct: 540 SPIISHDNYKYYLVLVDHYTRYTWLYPLQQKSQVKATFIAFKALVENRFQAKIRTLYSDN 599
Query: 289 AK*YFSTSFNSFMASHGIIHQSSCPHTPQQNGVAERKHRHLVDTTRTLLINAHAPFRFWG 348
+ + F+ S+GI H +S PHTP+ NG++ERKHRH+V+T TLL A P +W
Sbjct: 600 GGEFIA--LRDFLVSNGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLTQASVPREYWT 657
Query: 349 DAILIACYLITRMPSSVLGNEIPYSLLFPKDPLYVVPLRVFGSTCFAHDLSPDRDKLSAR 408
A A YLI RMP+ VL + P+ LF P Y LRVFG CF R+KL R
Sbjct: 658 YAFATAVYLINRMPTPVLCLQSPFQKLFGSSPNY-QRLRVFGCLCFPWLRPYTRNKLEER 716
Query: 409 AVKCVFLGYSKTQKGYRCYSPSAHRFYVSKDVTFFEDR-PFFAS------------PTTS 455
+ +CVFLGYS TQ Y C +R Y S+ V F E PF AS P +S
Sbjct: 717 SKRCVFLGYSLTQTAYLCLDVDNNRLYTSRHVMFDESTYPFAASIREQSQSSLVTPPESS 776
Query: 456 GSTTSTTSTTDVTTSHVMPIPLFEPFVSTQNPPQSQGNPEF--RQYGITYELRHVEAPET 513
S++ S + + P P T +PPQ Q + RQ G H + ++
Sbjct: 777 SSSSPANSGFPCSVLRLQSPPASSP--ETPSPPQQQNDSPVSPRQTGSPTPSHHSQVRDS 834
Query: 514 A-----------PIDSNDSTPKTPATNSSDSGIV-------PVSSPAAVPPERPID 551
P +++ P+ A ++ +S + P ++P++ +RP+D
Sbjct: 835 TLSPSPSVSNSEPTAPHENGPEPEAQSNPNSPFIGPLPNPNPETNPSSSIEQRPVD 890
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.342 0.151 0.501
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,792,379
Number of Sequences: 26719
Number of extensions: 938598
Number of successful extensions: 4095
Number of sequences better than 10.0: 115
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3662
Number of HSP's gapped (non-prelim): 200
length of query: 1105
length of database: 11,318,596
effective HSP length: 110
effective length of query: 995
effective length of database: 8,379,506
effective search space: 8337608470
effective search space used: 8337608470
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 65 (29.6 bits)
Medicago: description of AC147007.6