BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147006.6 + phase: 0 /pseudo
(797 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g32110 non-LTR reverse transcriptase, putative 77 4e-14
At3g30570 putative reverse transcriptase 70 4e-12
At2g31080 putative non-LTR retroelement reverse transcriptase 70 5e-12
At4g15590 reverse transcriptase like protein 66 7e-11
At2g31520 putative non-LTR retroelement reverse transcriptase 66 9e-11
At2g25550 putative non-LTR retroelement reverse transcriptase 66 9e-11
At4g04000 putative reverse transcriptase 64 4e-10
At4g26360 putative protein 62 1e-09
At4g10830 putative protein 62 1e-09
At2g01550 putative non-LTR retroelement reverse transcriptase 60 5e-09
At1g47910 reverse transcriptase, putative 60 5e-09
At4g08830 putative protein 59 1e-08
At2g19100 putative non-LTR retroelement reverse transcriptase 59 1e-08
At3g31420 hypothetical protein 59 1e-08
At1g31100 hypothetical protein 59 1e-08
At4g09710 RNA-directed DNA polymerase -like protein 58 2e-08
At2g07670 putative non-LTR retrolelement reverse transcriptase 58 2e-08
At2g28980 putative non-LTR retroelement reverse transcriptase 58 2e-08
At2g06295 putative protein 58 2e-08
At2g14430 putative non-LTR retroelement reverse transcriptase 55 2e-07
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 77.0 bits (188), Expect = 4e-14
Identities = 40/125 (32%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 67 LLKAKDTLITQRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALEENEG-WVVSPFEVCR 125
+L+ ++ + Q+SR +W GD N+KFFH +R+ N I+ L++N+G W+ + E+
Sbjct: 867 VLEQEEVVWMQKSREKWFVHGDRNTKFFHTSTIIRRRRNQIEMLQDNDGRWLSNAQELET 926
Query: 126 KVVNYFTNHFAEDRWDR--PRLDRVDFESLTEVENGLLVAPFSLLEIEEVVRDSDGGKSP 183
++Y+ ++ D D +L + F +L+E + L PFS LE+E +R K+P
Sbjct: 927 HAIDYYKRLYSLDDLDAVVEQLPQEGFTALSEADFSSLTKPFSPLEVEGAIRSMGKYKAP 986
Query: 184 GPNGY 188
GP+G+
Sbjct: 987 GPDGF 991
>At3g30570 putative reverse transcriptase
Length = 1099
Score = 70.5 bits (171), Expect = 4e-12
Identities = 46/171 (26%), Positives = 90/171 (51%), Gaps = 4/171 (2%)
Query: 8 LKGLKVILKE*IKKEYGGMEDRVELLVEDIKMLDEKGEEGTLTE*EVGLHKGKLVELWRL 67
LKG++ L++ K+ +G ++++ E L+ +IK + + T+ + ++E +
Sbjct: 323 LKGIQTTLRKWNKEVFGDIQEKKEKLMVEIKTVQDSLYSNQ-TDDLLRRESELIIEFDVV 381
Query: 68 LKAKDTLITQRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALE-ENEGWVVSPFEVCRK 126
L+ ++TL +SR +W +GD N+ FFH +R+ N I+ L+ E GW+ + E+ +
Sbjct: 382 LEQEETLWLHKSREKWFVQGDRNTSFFHTSTIIRRRHNRIEMLKNEKGGWISNTNELEKL 441
Query: 127 VVNYFTNHFAEDRWDR--PRLDRVDFESLTEVENGLLVAPFSLLEIEEVVR 175
++Y+ ++ D D RL F L + E L PFS +E+E ++
Sbjct: 442 AIDYYKRLYSLDDVDEVVERLPAGRFLGLNQEEQIRLNKPFSAMEVESALK 492
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 70.1 bits (170), Expect = 5e-12
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 12/176 (6%)
Query: 20 KKEYGGMEDRVELLVEDIK----MLDEKGEEGTLTE*EVGLHKGKLVELWRLLKAKDTLI 75
++ +G + R E LV DIK +L + L + EV L + LV L+ ++TL
Sbjct: 145 REVFGDIHVRKEKLVADIKEVQDLLGVVLSDDLLAKEEVLLKEMDLV-----LEQEETLW 199
Query: 76 TQRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALE-ENEGWVVSPFEVCRKVVNYFTNH 134
Q+SR ++++ GD N+ FFH +R+ N I++L+ +++ WV E+ + Y+
Sbjct: 200 FQKSREKYIELGDRNTTFFHTSTIIRRRRNRIESLKGDDDRWVTDKVELEAMALTYYKRL 259
Query: 135 FA-EDRWD-RPRLDRVDFESLTEVENGLLVAPFSLLEIEEVVRDSDGGKSPGPNGY 188
++ ED + R L F S++E E L+ F+ E+ V+ K+PGP+GY
Sbjct: 260 YSLEDVSEVRNMLPTGGFASISEAEKAALLQAFTKAEVVSAVKSMGRFKAPGPDGY 315
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 66.2 bits (160), Expect = 7e-11
Identities = 55/184 (29%), Positives = 89/184 (47%), Gaps = 4/184 (2%)
Query: 8 LKGLKVILKE*IKKEYGGMEDRVELLVEDIKMLDEKGEEGTLTE*EVGLHKGKLVELWRL 67
L L+ LK+ K+ +G + R E +V D+K + + E T+ + L E L
Sbjct: 85 LNRLRWQLKKWNKEVFGNIHVRKEKVVSDLKAVQDLLEV-VQTDDLLMKEDTLLKEFDVL 143
Query: 68 LKAKDTLITQRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALEENEG-WVVSPFEVCRK 126
L ++TL Q+SR + L GD N+ FFH +R+ N I+ L+++E WV + +
Sbjct: 144 LHQEETLWFQKSREKLLALGDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKL 203
Query: 127 VVNYFTNHFAEDRWD--RPRLDRVDFESLTEVENGLLVAPFSLLEIEEVVRDSDGGKSPG 184
++Y+ ++ + R L F LT E L PF+ E+ VR K+PG
Sbjct: 204 AMDYYRKLYSLEDVSVVRGTLPTEGFPRLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPG 263
Query: 185 PNGY 188
P+GY
Sbjct: 264 PDGY 267
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 65.9 bits (159), Expect = 9e-11
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 77 QRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALEENEG-WVVSPFEVCRKVVNYFTNHF 135
Q+SR++W+K+GD N+ +FH C K R S N + + +++G E+ ++FTN F
Sbjct: 494 QKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIF 553
Query: 136 AEDRWDRPRLDRVDFES-LTEVENGLLVAPFSLLEIEEVVRDSDGGKSPGPNGYNFSF 192
+ + +D DF+S +T N L FS EI + + K+PGP+G F
Sbjct: 554 STNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARF 611
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 65.9 bits (159), Expect = 9e-11
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 77 QRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALEENEG-WVVSPFEVCRKVVNYFTNHF 135
Q+SR++W+K+GD N+ +FH C K R S N + + +++G E+ ++FTN F
Sbjct: 720 QKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIF 779
Query: 136 AEDRWDRPRLDRVDFES-LTEVENGLLVAPFSLLEIEEVVRDSDGGKSPGPNGYNFSF 192
+ + +D DF+S +T N L FS EI + + K+PGP+G F
Sbjct: 780 STNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARF 837
>At4g04000 putative reverse transcriptase
Length = 1077
Score = 63.5 bits (153), Expect = 4e-10
Identities = 46/156 (29%), Positives = 77/156 (48%), Gaps = 7/156 (4%)
Query: 40 LDEKGEEGTLTE*EVGLHKGKLVELWRLLKAKDTLITQRSRSRWLKKGDANSKFFHKCIK 99
L+E + T+ V L L+ +R ++T QRSR+ WL GD NS FFH
Sbjct: 280 LEEALTDDAATQDSVDLLNQNLLLAYR---KEETFWKQRSRNLWLALGDKNSCFFHAATN 336
Query: 100 LRKSINSIKALEENEGW-VVSPFEVCRKVVNYFTNHFAEDRWDRPRL--DRVDFESLTEV 156
R++IN+I +E + G V E+ + +YF + F DR + + + T++
Sbjct: 337 SRRAINTISVIENSAGTSVYEDSEIIETISDYFQDIFTSQEGDRTSVVAEALSPCITTDM 396
Query: 157 ENGLLVAPFSLLEIEEVVRDSDGGKSPGPNGYNFSF 192
N L+ P ++ EI++ K+PG +G++ SF
Sbjct: 397 NNTLISLP-TVAEIKQACLSIHPDKAPGRDGFSASF 431
>At4g26360 putative protein
Length = 1141
Score = 62.4 bits (150), Expect = 1e-09
Identities = 52/195 (26%), Positives = 88/195 (44%), Gaps = 20/195 (10%)
Query: 6 KKLKGLKVILKE*IKKEYGGMEDRVELLVEDIKMLDEKGEEGTLTE*EVGLHKGKLVELW 65
KKLK LK +K+ + Y +E R E E + + E H+ + W
Sbjct: 276 KKLKALKKPIKDFSRLNYSNLEKRTEEAHETLLSFQNLTLDNPSLE--NAAHELEAQRKW 333
Query: 66 RLLK-AKDTLITQRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALEENEGWVV-SPFEV 123
++L A+++ QRSR W +GD N+++FH+ RKS+N+I L ++ G + S +
Sbjct: 334 QILATAEESFFRQRSRVTWFAEGDGNTRYFHRMADSRKSVNTITTLVDDSGTQIDSQQGI 393
Query: 124 CRKVVNYFTNHFAEDRWDRPRLDRVDFESLTEVENGLLVAPFS-LLEIEEVVRDSD---- 178
YF N ++D D L++ D L P+S + ++E + D D
Sbjct: 394 ADHCALYFENLLSDDN-DPYSLEQDDMNLLLTYR-----CPYSQVADLEAMFSDEDIKAA 447
Query: 179 -----GGKSPGPNGY 188
K+ GP+G+
Sbjct: 448 FFGLPSNKACGPDGF 462
>At4g10830 putative protein
Length = 1294
Score = 62.4 bits (150), Expect = 1e-09
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 77 QRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALEENEGWVV-SPFEVCRKVVNYFTNHF 135
Q+SR++W+K+GD N++FFH C K R S+N + +++ EG + E+ +FT +
Sbjct: 700 QKSRNQWMKEGDRNTEFFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVY 759
Query: 136 AEDRWDRPRLDRVDFESL-TEVENGLLVAPFSLLEIEEVVRDSDGGKSPGPNGYNFSF 192
+ +D F+ + TE N L S LEI + K+PGP+G F
Sbjct: 760 ESNGRPVSIIDFAGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARF 817
>At2g01550 putative non-LTR retroelement reverse transcriptase
Length = 1449
Score = 60.1 bits (144), Expect = 5e-09
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 21/200 (10%)
Query: 6 KKLKGLKVILKE*IKKEYGGMEDRVELLVEDIKMLDEKGEEGTLTE*EVGLHKGKLVELW 65
KKLK LK L+ K++ G + R + + + ++ + + V
Sbjct: 704 KKLKALKPKLRGLAKEKMGNLVKRTREAYLSLCQAQQSNSQNP-SQRAMEIESEAYVRWD 762
Query: 66 RLLKAKDTLITQRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALEENEGWVVSPFEVCR 125
R+ ++ + Q S+ WLK GD N+K FH+ R + NSI+ +++ +G + + +
Sbjct: 763 RIASIEEKYLKQVSKLHWLKVGDKNNKTFHRAATARAAQNSIREIQKEDGSTATTKDDIK 822
Query: 126 KVVNYFTNHFAEDRWDRPRLDRVDFESLT-------------EVENGLLVAPFSLLEIEE 172
F F + L D+E +T E +L A S EI
Sbjct: 823 NETERFFQEFLQ-------LIPNDYEGITVEKLTSLLPYHCSPAEKDMLTASVSAKEIRG 875
Query: 173 VVRDSDGGKSPGPNGYNFSF 192
+ KSPGP+GY F
Sbjct: 876 ALFSMPNDKSPGPDGYTSEF 895
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 60.1 bits (144), Expect = 5e-09
Identities = 42/124 (33%), Positives = 59/124 (46%), Gaps = 14/124 (11%)
Query: 77 QRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALEENEG-WVVSPFEVCRKVVNYFTNHF 135
Q+SRS W+K GD NSKFFH K R++ N I L + G W + ++ V+YF N F
Sbjct: 122 QKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVSYFQNLF 181
Query: 136 AEDRWDRPRLDRVDFESLTEVE-------NGLLVAPFSLLEIEEVVRDSDGGKSPGPNGY 188
+V E+L EV+ N LL A + E+ + K+PGP+G
Sbjct: 182 TTAN------PQVFDEALGEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPGPDGM 235
Query: 189 NFSF 192
F
Sbjct: 236 TALF 239
>At4g08830 putative protein
Length = 947
Score = 58.9 bits (141), Expect = 1e-08
Identities = 39/128 (30%), Positives = 63/128 (48%), Gaps = 7/128 (5%)
Query: 67 LLKAKDTLIT--QRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALEENEG-WVVSPFEV 123
+L+ ++ LI +SR +W+ GD N+ +FH +R+ N ++ L EG W+ E+
Sbjct: 83 MLRKEEDLIKAFDKSREKWIALGDRNTNYFHTTTIIRRRQNRVERLHNEEGTWIFDAKEL 142
Query: 124 CRKVVNYFTNHFAED---RWDRPRLDRVDFESLTEVENGLLVAPFSLLEIEEVVRDSDGG 180
V Y+ ++ D + P L + E LT E L PF E+E +R
Sbjct: 143 EALAVQYYQRLYSMDDVLQVVNP-LPQDGLERLTREEVLSLNKPFLATEVEVAIRSMGKY 201
Query: 181 KSPGPNGY 188
K+PGP+GY
Sbjct: 202 KAPGPDGY 209
>At2g19100 putative non-LTR retroelement reverse transcriptase
Length = 1447
Score = 58.9 bits (141), Expect = 1e-08
Identities = 48/196 (24%), Positives = 89/196 (44%), Gaps = 13/196 (6%)
Query: 6 KKLKGLKVILKE*IKKEYGGMEDRVELLVEDIKMLDEKGEEGTLTE*EVGLHKGKLV--E 63
KKLK LK +L+ K+ G + + + + K +E TL K ++ +
Sbjct: 697 KKLKSLKPLLRNLAKERLGNLVKKTREAYDTLC----KKQESTLNNPTPNAMKEEVEAHD 752
Query: 64 LWRLLKA-KDTLITQRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALEENEGWVVSPFE 122
W + ++ + ++S+ WL GD N+K FH+ + R++ NSI ++ +G V + +
Sbjct: 753 RWEHVAGLEEKFLKKKSKLHWLDGGDKNNKAFHRAVVTREAQNSISEIQCQDGSVTAKGD 812
Query: 123 VCRKVVNYFTNHFAE-DRWDRPRLDRVDFESL-----TEVENGLLVAPFSLLEIEEVVRD 176
+ F F + + + D + L +E E+ LL + EI++V+
Sbjct: 813 EIKAYAERFFREFLQLIPNEYEGVTMADLQDLLPFRCSETEHELLTRVVTAEEIKKVLFS 872
Query: 177 SDGGKSPGPNGYNFSF 192
KSPGP+G+ F
Sbjct: 873 MPNDKSPGPDGFTSEF 888
>At3g31420 hypothetical protein
Length = 1491
Score = 58.5 bits (140), Expect = 1e-08
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 78 RSRSRWLKKGDANSKFFHKCIKLRKSINSIKALEENEGWVVSPFEVCRKV-VNYFTNHFA 136
+SRSRWL GD N+++FH K R+ N + ++++++G + E KV +NYF + +
Sbjct: 522 KSRSRWLNAGDRNTRYFHSTTKTRRCRNRLLSVQDSDGDICRGDENIAKVAINYFDDLYK 581
Query: 137 EDRWDRPRLDRV---DFESLTEVENGLLVAPFSLLEIEEVVRDSDGGKSPGPNGYNFSF 192
R V + +T+ N L+ P + LEIEE V ++P P+G+ F
Sbjct: 582 STPNTSLRYADVFQGFQQKITDEINEDLIRPVTELEIEESVFSVAPSRTPDPDGFTADF 640
>At1g31100 hypothetical protein
Length = 1090
Score = 58.5 bits (140), Expect = 1e-08
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 20/199 (10%)
Query: 6 KKLKGLKVILKE*IKKEYGGMEDRVE-----LLVEDIKMLDEKGEEGTLTE*EVGLHKGK 60
KKLK LK ++ + + +E RV+ +L K L + E E
Sbjct: 195 KKLKALKNPIRTFSMENFSNLEKRVKEAHNLVLYRQNKTLSDPTIPNAALEMEAQ----- 249
Query: 61 LVELWRLL-KAKDTLITQRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALEENEGWVV- 118
W +L KA+++ QRSR W+ +GD+N+ +FH+ RK++N+I + ++ G +
Sbjct: 250 --RKWLILVKAEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKID 307
Query: 119 SPFEVCRKVVNYFTNHFAEDRWDRPRLDRVDFESL-----TEVENGLLVAPFSLLEIEEV 173
+ + + YF+N + P L + DF+ L + + L FS +I+
Sbjct: 308 TQLGIKEHCIEYFSNLLGGE-VGPPMLIQEDFDLLLPFRCSHDQKKELAMSFSRQDIKSA 366
Query: 174 VRDSDGGKSPGPNGYNFSF 192
K+ GP+G+ F
Sbjct: 367 FFSFPSNKTSGPDGFPVEF 385
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 58.2 bits (139), Expect = 2e-08
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 2/132 (1%)
Query: 63 ELWRLLKAKDTLITQRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALEENEGWVVSPFE 122
EL + ++ Q SR +WL GD N +FH + R+ +N++ +E+ G E
Sbjct: 265 ELEAAYRQEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEE 324
Query: 123 -VCRKVVNYFTNHF-AEDRWDRPRLDRVDFESLTEVENGLLVAPFSLLEIEEVVRDSDGG 180
+ + +YF N F + D + ++ N L+ SLLEI+E +
Sbjct: 325 QIASTISSYFQNIFTTSNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSISAD 384
Query: 181 KSPGPNGYNFSF 192
K+PGP+G++ SF
Sbjct: 385 KAPGPDGFSASF 396
>At2g07670 putative non-LTR retrolelement reverse transcriptase
Length = 913
Score = 58.2 bits (139), Expect = 2e-08
Identities = 38/135 (28%), Positives = 75/135 (55%), Gaps = 2/135 (1%)
Query: 8 LKGLKVILKE*IKKEYGGMEDRVELLVEDIKMLDEKGEEGTLTE*EVGLHKGKLVELWRL 67
L LK LK+ ++ +G + R E L+ +IK++ E E T+ + + + E +
Sbjct: 745 LAALKSKLKKWNREVFGDVNRRKESLMNEIKVVQELLEINQ-TDNLLSKEEELIKEFDVV 803
Query: 68 LKAKDTLITQRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALEENEG-WVVSPFEVCRK 126
L+ ++ L Q+SR +W++ GD N+K+FH +R+ N I+ L+ ++G WV E+ +
Sbjct: 804 LEQEEVLWFQKSREKWVELGDRNTKYFHTMTVVRRRRNRIEMLKADDGSWVSQQQELEKM 863
Query: 127 VVNYFTNHFAEDRWD 141
V+Y++ ++ + D
Sbjct: 864 AVDYYSRLYSMEDVD 878
>At2g28980 putative non-LTR retroelement reverse transcriptase
Length = 1529
Score = 57.8 bits (138), Expect = 2e-08
Identities = 51/198 (25%), Positives = 86/198 (42%), Gaps = 17/198 (8%)
Query: 6 KKLKGLKVILKE*IKKEYGGMEDRVE----LLVEDIKMLDEKGEEGTLTE*EVGLHKGKL 61
KKLK LK L+E K++ G + R LL E + T+ E + K
Sbjct: 586 KKLKTLKPHLRELGKEKLGDLPKRTREAHILLCEKQATTLANPSQETIAE------ELKA 639
Query: 62 VELW-RLLKAKDTLITQRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALE-ENEGWVVS 119
W L + ++ + Q+S+ W+ GD N+ +FHK ++RK NSI+ + N + +
Sbjct: 640 YTDWTHLSELEEGFLKQKSKLHWMNVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQT 699
Query: 120 PFEVCRKVVNYFTNHFAEDRWDRPRLDRVDFESL-----TEVENGLLVAPFSLLEIEEVV 174
E+ + +F D + D +L + + +L + EI++V+
Sbjct: 700 SEEIKGEAERFFNEFLNRQSGDFHGISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVL 759
Query: 175 RDSDGGKSPGPNGYNFSF 192
KSPGP+GY F
Sbjct: 760 FAMPNNKSPGPDGYTSEF 777
Score = 32.0 bits (71), Expect = 1.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 564 VKWELVCQNKRNGSLGVNSLSLVILVSLIGLIRKL 598
+ W +CQ K+ G LG+ SL+ VS + LI +L
Sbjct: 1157 IAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRL 1191
>At2g06295 putative protein
Length = 418
Score = 57.8 bits (138), Expect = 2e-08
Identities = 40/121 (33%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 77 QRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALEENEG-WVVSPFEVCRKVVNYFTNHF 135
QRSR WL GD NS FFH K R++ N + +E+ G V ++ + YF F
Sbjct: 251 QRSRIMWLCLGDQNSGFFHAVTKKRRARNCLSVIEDESGNPVFEDHKITEVISAYFHKMF 310
Query: 136 AEDRWDRPRLDRVDFESL----TEVENGLLVAPFSLLEIEEVVRDSDGGKSPGPNGYNFS 191
D D E+L +E N L+A SL EI + + K PGP ++ S
Sbjct: 311 HSDDLDESHTRATVTEALSPCVSEETNLALIAVPSLKEIHDALMGIHADKVPGPEDFSAS 370
Query: 192 F 192
F
Sbjct: 371 F 371
>At2g14430 putative non-LTR retroelement reverse transcriptase
Length = 1277
Score = 54.7 bits (130), Expect = 2e-07
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 22/146 (15%)
Query: 56 LHKGKLVELWRLLKAKDTLITQRSRSRWLKKGDANSKFFHKCIKLRKSINSIKALEENEG 115
L K KL +L + L+ + + Q+S+ W+K GD N+ +FHK ++R+ NSI+ ++ G
Sbjct: 512 LGKEKLGDLPKHLE--EGYMKQKSKLHWMKVGDRNNSYFHKAAQVRRMQNSIREIQGPNG 569
Query: 116 WVVSPFEVCRKVVNYFTNHFAEDRWDRPRLDRVDFESLT--EVEN-----------GLLV 162
V+ E + F F + DF+ +T E++N +L
Sbjct: 570 VVLQTSEEIKGEAERFFQEFLNHQ-------PSDFQGMTVEELQNLMSFRCSATDQDMLT 622
Query: 163 APFSLLEIEEVVRDSDGGKSPGPNGY 188
+ EI++V+ KSPGP+GY
Sbjct: 623 REVTSEEIQKVLFAMPSNKSPGPDGY 648
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.356 0.160 0.625
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,870,539
Number of Sequences: 26719
Number of extensions: 669339
Number of successful extensions: 3202
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3051
Number of HSP's gapped (non-prelim): 118
length of query: 797
length of database: 11,318,596
effective HSP length: 107
effective length of query: 690
effective length of database: 8,459,663
effective search space: 5837167470
effective search space used: 5837167470
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 64 (29.3 bits)
Medicago: description of AC147006.6