Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147001.15 + phase: 0 
         (146 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g10980 histon H3 protein                                           235  5e-63
At4g40040 Histon H3                                                   235  5e-63
At4g40030 histone H3.3                                                235  5e-63
At5g65360 histone H3 (sp|P05203)                                      231  1e-61
At5g10390 histone H3 - like protein                                   231  1e-61
At5g10400 histone H3 - like protein                                   231  1e-61
At3g27360 histone H3 like protein                                     231  1e-61
At1g09200 histone H3 like protein                                     231  1e-61
At1g75600 histone H3, putative                                        227  2e-60
At1g19890 hypothetical protein                                        226  3e-60
At1g13370 unknown protein                                             224  1e-59
At5g65350 histone H3                                                  222  5e-59
At1g75610 histone H3, putative                                        195  8e-51
At5g12910 histone H3 -like protein                                    175  7e-45
At1g01370 centromeric histone H3 HTR12                                111  2e-25
At5g56240 unknown protein                                              29  1.0
At1g64180 unknown protein                                              28  1.7
At5g46320 unknown protein                                              28  2.3
At2g18040 putative peptidyl-prolyl cis-trans isomerase                 27  5.0
At2g16650 hypothetical protein                                         27  5.0

>At5g10980 histon H3 protein
          Length = 136

 Score =  235 bits (600), Expect = 5e-63
 Identities = 126/146 (86%), Positives = 128/146 (87%), Gaps = 10/146 (6%)

Query: 1   MARTKQTARKSTGGKAPRKELATKVARAPRAKGGGKSMRKMREGHVKKPHRFRCGTVALR 60
           MARTKQTARKSTGGKAPRK+LATK AR      GG          VKKPHR+R GTVALR
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGG----------VKKPHRYRPGTVALR 50

Query: 61  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 120
           EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL
Sbjct: 51  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 110

Query: 121 CAIHAKRVTIMPKDIQLARRIRGERA 146
           CAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 111 CAIHAKRVTIMPKDIQLARRIRGERA 136


>At4g40040 Histon H3
          Length = 136

 Score =  235 bits (600), Expect = 5e-63
 Identities = 126/146 (86%), Positives = 128/146 (87%), Gaps = 10/146 (6%)

Query: 1   MARTKQTARKSTGGKAPRKELATKVARAPRAKGGGKSMRKMREGHVKKPHRFRCGTVALR 60
           MARTKQTARKSTGGKAPRK+LATK AR      GG          VKKPHR+R GTVALR
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGG----------VKKPHRYRPGTVALR 50

Query: 61  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 120
           EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL
Sbjct: 51  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 110

Query: 121 CAIHAKRVTIMPKDIQLARRIRGERA 146
           CAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 111 CAIHAKRVTIMPKDIQLARRIRGERA 136


>At4g40030 histone H3.3
          Length = 136

 Score =  235 bits (600), Expect = 5e-63
 Identities = 126/146 (86%), Positives = 128/146 (87%), Gaps = 10/146 (6%)

Query: 1   MARTKQTARKSTGGKAPRKELATKVARAPRAKGGGKSMRKMREGHVKKPHRFRCGTVALR 60
           MARTKQTARKSTGGKAPRK+LATK AR      GG          VKKPHR+R GTVALR
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGG----------VKKPHRYRPGTVALR 50

Query: 61  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 120
           EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL
Sbjct: 51  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 110

Query: 121 CAIHAKRVTIMPKDIQLARRIRGERA 146
           CAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 111 CAIHAKRVTIMPKDIQLARRIRGERA 136


>At5g65360 histone H3 (sp|P05203)
          Length = 136

 Score =  231 bits (589), Expect = 1e-61
 Identities = 125/146 (85%), Positives = 126/146 (85%), Gaps = 10/146 (6%)

Query: 1   MARTKQTARKSTGGKAPRKELATKVARAPRAKGGGKSMRKMREGHVKKPHRFRCGTVALR 60
           MARTKQTARKSTGGKAPRK+LATK AR      GG          VKKPHRFR GTVALR
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGG----------VKKPHRFRPGTVALR 50

Query: 61  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 120
           EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNL
Sbjct: 51  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNL 110

Query: 121 CAIHAKRVTIMPKDIQLARRIRGERA 146
           CAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 111 CAIHAKRVTIMPKDIQLARRIRGERA 136


>At5g10390 histone H3 - like protein
          Length = 136

 Score =  231 bits (589), Expect = 1e-61
 Identities = 125/146 (85%), Positives = 126/146 (85%), Gaps = 10/146 (6%)

Query: 1   MARTKQTARKSTGGKAPRKELATKVARAPRAKGGGKSMRKMREGHVKKPHRFRCGTVALR 60
           MARTKQTARKSTGGKAPRK+LATK AR      GG          VKKPHRFR GTVALR
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGG----------VKKPHRFRPGTVALR 50

Query: 61  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 120
           EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNL
Sbjct: 51  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNL 110

Query: 121 CAIHAKRVTIMPKDIQLARRIRGERA 146
           CAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 111 CAIHAKRVTIMPKDIQLARRIRGERA 136


>At5g10400 histone H3 - like protein
          Length = 136

 Score =  231 bits (589), Expect = 1e-61
 Identities = 125/146 (85%), Positives = 126/146 (85%), Gaps = 10/146 (6%)

Query: 1   MARTKQTARKSTGGKAPRKELATKVARAPRAKGGGKSMRKMREGHVKKPHRFRCGTVALR 60
           MARTKQTARKSTGGKAPRK+LATK AR      GG          VKKPHRFR GTVALR
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGG----------VKKPHRFRPGTVALR 50

Query: 61  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 120
           EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNL
Sbjct: 51  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNL 110

Query: 121 CAIHAKRVTIMPKDIQLARRIRGERA 146
           CAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 111 CAIHAKRVTIMPKDIQLARRIRGERA 136


>At3g27360 histone H3 like protein
          Length = 136

 Score =  231 bits (589), Expect = 1e-61
 Identities = 125/146 (85%), Positives = 126/146 (85%), Gaps = 10/146 (6%)

Query: 1   MARTKQTARKSTGGKAPRKELATKVARAPRAKGGGKSMRKMREGHVKKPHRFRCGTVALR 60
           MARTKQTARKSTGGKAPRK+LATK AR      GG          VKKPHRFR GTVALR
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGG----------VKKPHRFRPGTVALR 50

Query: 61  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 120
           EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNL
Sbjct: 51  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNL 110

Query: 121 CAIHAKRVTIMPKDIQLARRIRGERA 146
           CAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 111 CAIHAKRVTIMPKDIQLARRIRGERA 136


>At1g09200 histone H3 like protein
          Length = 136

 Score =  231 bits (589), Expect = 1e-61
 Identities = 125/146 (85%), Positives = 126/146 (85%), Gaps = 10/146 (6%)

Query: 1   MARTKQTARKSTGGKAPRKELATKVARAPRAKGGGKSMRKMREGHVKKPHRFRCGTVALR 60
           MARTKQTARKSTGGKAPRK+LATK AR      GG          VKKPHRFR GTVALR
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGG----------VKKPHRFRPGTVALR 50

Query: 61  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 120
           EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNL
Sbjct: 51  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNL 110

Query: 121 CAIHAKRVTIMPKDIQLARRIRGERA 146
           CAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 111 CAIHAKRVTIMPKDIQLARRIRGERA 136


>At1g75600 histone H3, putative
          Length = 136

 Score =  227 bits (578), Expect = 2e-60
 Identities = 122/146 (83%), Positives = 125/146 (85%), Gaps = 10/146 (6%)

Query: 1   MARTKQTARKSTGGKAPRKELATKVARAPRAKGGGKSMRKMREGHVKKPHRFRCGTVALR 60
           MARTKQTARKS GGKAPR  LATK AR      GG          VKKPHR+R GTVALR
Sbjct: 1   MARTKQTARKSHGGKAPRTLLATKAARKSAPTTGG----------VKKPHRYRPGTVALR 50

Query: 61  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 120
           EIRKYQKSTELLIRKLPFQRLVREIAQD+KTDLRFQSHAVLALQEAAEAYLVGLFEDTNL
Sbjct: 51  EIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 110

Query: 121 CAIHAKRVTIMPKDIQLARRIRGERA 146
           CAIHAKRVTIMPKD+QLARRIRGERA
Sbjct: 111 CAIHAKRVTIMPKDVQLARRIRGERA 136


>At1g19890 hypothetical protein
          Length = 137

 Score =  226 bits (577), Expect = 3e-60
 Identities = 122/146 (83%), Positives = 125/146 (85%), Gaps = 9/146 (6%)

Query: 1   MARTKQTARKSTGGKAPRKELATKVARAPRAKGGGKSMRKMREGHVKKPHRFRCGTVALR 60
           MARTKQTARKSTGGK PRKELATK AR           R+   G VK+ HRFR GTVALR
Sbjct: 1   MARTKQTARKSTGGKGPRKELATKAAR---------KTRRPYRGGVKRAHRFRPGTVALR 51

Query: 61  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 120
           EIRKYQKST+LLIRKLPFQRLVREIAQDFK DLRFQSHAVLALQEAAEAYLVGLFEDTNL
Sbjct: 52  EIRKYQKSTDLLIRKLPFQRLVREIAQDFKVDLRFQSHAVLALQEAAEAYLVGLFEDTNL 111

Query: 121 CAIHAKRVTIMPKDIQLARRIRGERA 146
           CAIHAKRVTIM KDIQLARRIRGERA
Sbjct: 112 CAIHAKRVTIMSKDIQLARRIRGERA 137


>At1g13370 unknown protein
          Length = 136

 Score =  224 bits (572), Expect = 1e-59
 Identities = 121/146 (82%), Positives = 124/146 (84%), Gaps = 10/146 (6%)

Query: 1   MARTKQTARKSTGGKAPRKELATKVARAPRAKGGGKSMRKMREGHVKKPHRFRCGTVALR 60
           MARTKQ+ARKS GGKAP K+LATK AR      GG          VKKPHRFR GTVALR
Sbjct: 1   MARTKQSARKSHGGKAPTKQLATKAARKSAPTTGG----------VKKPHRFRPGTVALR 50

Query: 61  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 120
           EIRKYQKSTELL RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL
Sbjct: 51  EIRKYQKSTELLNRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 110

Query: 121 CAIHAKRVTIMPKDIQLARRIRGERA 146
           CAIHAKRVTIMPKD+QLARRIR ERA
Sbjct: 111 CAIHAKRVTIMPKDVQLARRIRAERA 136


>At5g65350 histone H3
          Length = 139

 Score =  222 bits (566), Expect = 5e-59
 Identities = 120/146 (82%), Positives = 124/146 (84%), Gaps = 10/146 (6%)

Query: 1   MARTKQTARKSTGGKAPRKELATKVARAPRAKGGGKSMRKMREGHVKKPHRFRCGTVALR 60
           MARTKQTAR STGGKAPRK+LA K AR      GG          VKKPHRFR GTVALR
Sbjct: 1   MARTKQTARISTGGKAPRKQLAPKAARQSAPATGG----------VKKPHRFRPGTVALR 50

Query: 61  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 120
           +IRKYQKSTE+LIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNL
Sbjct: 51  DIRKYQKSTEILIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNL 110

Query: 121 CAIHAKRVTIMPKDIQLARRIRGERA 146
           CAIHAKRVTIMPK+IQLARRIRGERA
Sbjct: 111 CAIHAKRVTIMPKEIQLARRIRGERA 136


>At1g75610 histone H3, putative
          Length = 115

 Score =  195 bits (495), Expect = 8e-51
 Identities = 99/103 (96%), Positives = 101/103 (97%)

Query: 44  GHVKKPHRFRCGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLAL 103
           G VKKPHR+R GTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLAL
Sbjct: 13  GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLAL 72

Query: 104 QEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 146
           QEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct: 73  QEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA 115


>At5g12910 histone H3 -like protein
          Length = 131

 Score =  175 bits (444), Expect = 7e-45
 Identities = 92/145 (63%), Positives = 111/145 (76%), Gaps = 15/145 (10%)

Query: 1   MARTKQTARKSTGGKAPRKELATKVARAPRAKGGGKSMRKMREGHVKKPHRFRCGTVALR 60
           MAR+ QTARK+TGGKAP   +       P                +KKP+R++ GTVALR
Sbjct: 1   MARSNQTARKATGGKAPHFAMRVWQHSTPP---------------LKKPYRYKPGTVALR 45

Query: 61  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 120
           EIRKYQK+T+L+IRKLPFQRLV+EIAQ  K DLRFQ+ AV ALQEAAEA++VG+FEDTNL
Sbjct: 46  EIRKYQKTTDLVIRKLPFQRLVKEIAQSLKADLRFQTGAVSALQEAAEAFMVGMFEDTNL 105

Query: 121 CAIHAKRVTIMPKDIQLARRIRGER 145
           CA+HAKR TIMPKDIQLA+R+RG+R
Sbjct: 106 CAMHAKRSTIMPKDIQLAKRLRGDR 130


>At1g01370 centromeric histone H3 HTR12
          Length = 178

 Score =  111 bits (277), Expect = 2e-25
 Identities = 66/143 (46%), Positives = 85/143 (59%), Gaps = 2/143 (1%)

Query: 4   TKQTARKSTGGKAPRKELATKVARAPRAKGGGKSMRKMREGHVKKPHRFRCGTVALREIR 63
           T  T R   GG   ++   T        +G  +S + M  G  KK +R+R GTVAL+EIR
Sbjct: 32  TTPTRRGGEGGDNTQQTNPTTSPATGTRRGAKRSRQAMPRGSQKKSYRYRPGTVALKEIR 91

Query: 64  KYQKSTELLIRKLPFQRLVREIAQDFKTDL--RFQSHAVLALQEAAEAYLVGLFEDTNLC 121
            +QK T LLI    F R VR I          R+ + A++ALQEAAE YLVGLF D+ LC
Sbjct: 92  HFQKQTNLLIPAASFIREVRSITHMLAPPQINRWTAEALVALQEAAEDYLVGLFSDSMLC 151

Query: 122 AIHAKRVTIMPKDIQLARRIRGE 144
           AIHA+RVT+M KD +LARR+ G+
Sbjct: 152 AIHARRVTLMRKDFELARRLGGK 174


>At5g56240 unknown protein
          Length = 986

 Score = 28.9 bits (63), Expect = 1.0
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 2/22 (9%)

Query: 31  AKGGGKSMRKMREGHVKKPHRF 52
           +KG  KS+RK+R G  KKPH+F
Sbjct: 348 SKGTNKSLRKIRRG--KKPHKF 367


>At1g64180 unknown protein
          Length = 593

 Score = 28.1 bits (61), Expect = 1.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 22  ATKVARAPRAKGGGKSMRKMREGHVK 47
           ATK+ RAP    G  + R++R GH K
Sbjct: 89  ATKMHRAPLGSAGPSNSRRLRHGHGK 114


>At5g46320 unknown protein
          Length = 118

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 21/83 (25%), Positives = 41/83 (49%)

Query: 2   ARTKQTARKSTGGKAPRKELATKVARAPRAKGGGKSMRKMREGHVKKPHRFRCGTVALRE 61
           AR  +++ + T     + +L + +A   + K   K +RK +E ++KK +R     + L +
Sbjct: 31  ARRVRSSTRQTRILKNQAKLDSLMAELEQIKAYEKVLRKGQEQNIKKYNRKEISDLKLED 90

Query: 62  IRKYQKSTELLIRKLPFQRLVRE 84
           +  +QK  E L   L  +R+  E
Sbjct: 91  LVVFQKKLENLQDDLKKKRVELE 113


>At2g18040 putative peptidyl-prolyl cis-trans isomerase
          Length = 119

 Score = 26.6 bits (57), Expect = 5.0
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 14 GKAPRKELATKVARAPRAKGGGKSMRKMREGHVKKPHRFRCGTVALR 60
          GKA  +E+AT+V+    AK GG  +     G ++KP  F   T AL+
Sbjct: 55 GKANFEEVATRVSDCSSAKRGG-DLGSFGRGQMQKP--FEEATYALK 98


>At2g16650 hypothetical protein
          Length = 369

 Score = 26.6 bits (57), Expect = 5.0
 Identities = 28/108 (25%), Positives = 47/108 (42%), Gaps = 14/108 (12%)

Query: 9   RKSTGGKAPRKELATKVARAPRAKGGGKSMRKMREGHVKKPHRFRCGTVALREIRKYQKS 68
           R  + G +P +   T VAR   AKG G    K+ +  V        G V++  +R Y  +
Sbjct: 99  RMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVS------VGGVSIPRLRTYAPA 152

Query: 69  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFE 116
                 KL       E  + ++ +   ++ A +AL+EA  + L+ L E
Sbjct: 153 LLCFCEKL-------EAEKGYEVEEHMEA-AGIALEEAEISALLKLRE 192


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.323    0.135    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,834,582
Number of Sequences: 26719
Number of extensions: 99743
Number of successful extensions: 285
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 24
length of query: 146
length of database: 11,318,596
effective HSP length: 90
effective length of query: 56
effective length of database: 8,913,886
effective search space: 499177616
effective search space used: 499177616
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)


Medicago: description of AC147001.15