BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147000.3 + phase: 0 /pseudo
(651 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10830 putative protein 215 5e-56
At3g45550 putative protein 214 9e-56
At2g31520 putative non-LTR retroelement reverse transcriptase 213 4e-55
At2g25550 putative non-LTR retroelement reverse transcriptase 213 4e-55
At2g41580 putative non-LTR retroelement reverse transcriptase 202 4e-52
At2g45230 putative non-LTR retroelement reverse transcriptase 201 1e-51
At2g17910 putative non-LTR retroelement reverse transcriptase 200 2e-51
At3g25485 unknown protein 199 3e-51
At2g01840 putative non-LTR retroelement reverse transcriptase 199 4e-51
At2g15540 putative non-LTR retroelement reverse transcriptase 196 3e-50
At1g31030 F17F8.5 195 6e-50
At2g23880 putative non-LTR retroelement reverse transcriptase 194 1e-49
At3g32110 non-LTR reverse transcriptase, putative 194 2e-49
At3g44650 putative protein 193 3e-49
At1g24640 hypothetical protein 192 5e-49
At1g47910 reverse transcriptase, putative 187 1e-47
At4g09710 RNA-directed DNA polymerase -like protein 186 3e-47
At2g05200 putative non-LTR retroelement reverse transcriptase 185 8e-47
At2g11240 pseudogene 182 5e-46
At2g28980 putative non-LTR retroelement reverse transcriptase 182 7e-46
>At4g10830 putative protein
Length = 1294
Score = 215 bits (548), Expect = 5e-56
Identities = 112/301 (37%), Positives = 176/301 (58%), Gaps = 4/301 (1%)
Query: 14 NLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIK 73
+LTK S E+ A+ K+PGP+G++ F K W++V D ++ + F R + +
Sbjct: 785 DLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQ 844
Query: 74 GVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIK 133
+N T I +IPK+ NP+ L+DY PI+L LYK+++K L RL+ + ++VSDSQ+AFI
Sbjct: 845 SINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIP 904
Query: 134 GN*ILDGILIANEVVDD---ARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLW 190
G + D ++IA+E++ +R+ + + + D KAYD V+ +L+ M F W
Sbjct: 905 GRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETW 964
Query: 191 QKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQ 250
KWI + + +VLVNG P +RG+RQGDPLSP+LF+L A+ N L+K
Sbjct: 965 IKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEG 1024
Query: 251 LFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSML 310
G +G G +THLQFADD+L + + N ++++ V ++E SG K+N KSM+
Sbjct: 1025 DIRGIRIGN-GVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMI 1083
Query: 311 T 311
T
Sbjct: 1084 T 1084
>At3g45550 putative protein
Length = 851
Score = 214 bits (546), Expect = 9e-56
Identities = 114/300 (38%), Positives = 178/300 (59%), Gaps = 4/300 (1%)
Query: 15 LTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIKG 74
LT+ F E+ +A+ K+PGP+G++ F K+ WD+V +D ++ + F + +
Sbjct: 45 LTQDFRDSEIFEAICQIGDDKAPGPDGLTARFYKQCWDIVGNDVIKEVKLFFESSHMKTS 104
Query: 75 VNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIKG 134
VN T I +IPK+ NPQ L+DY PI+L LYKV++K + NRL+ + S+VSDSQ+AFI G
Sbjct: 105 VNHTNICMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSIVSDSQAAFIPG 164
Query: 135 N*ILDGILIANEVVDD---ARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLWQ 191
I D ++IA+E++ +R+ K + + D KAYD V+ +L+ M F W
Sbjct: 165 RIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWI 224
Query: 192 KWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQL 251
WI + + +VL+NG P S RG+RQGDPLSP+LF+L + + L+K A +
Sbjct: 225 GWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGD 284
Query: 252 FNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSMLT 311
G +G G +THLQFADD+L + + N ++++ V ++E SG K+N KS++T
Sbjct: 285 IRGVRIGN-GAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSLIT 343
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 213 bits (541), Expect = 4e-55
Identities = 115/301 (38%), Positives = 174/301 (57%), Gaps = 4/301 (1%)
Query: 14 NLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIK 73
+LTK FS E+ A+ K+PGP+G++ F K WD+V D + + F +
Sbjct: 579 DLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKP 638
Query: 74 GVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIK 133
+N T I +IPK+ NP L+DY PI+L LYKV++K L NRL++ + S+VSDSQ+AFI
Sbjct: 639 SINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIP 698
Query: 134 GN*ILDGILIANEVVDD---ARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLW 190
G I D ++IA+EV+ +R+ K + + D KAYD V+ +L+ M F W
Sbjct: 699 GRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKW 758
Query: 191 QKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQ 250
WI + + +VL+NG P + RG+RQGDPLSP+LF+L + + L+ A +
Sbjct: 759 IGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSG 818
Query: 251 LFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSML 310
G +G G +THLQFADD+L + + N ++++ V ++E SG K+N KSM+
Sbjct: 819 DLRGVRIGN-GAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMI 877
Query: 311 T 311
T
Sbjct: 878 T 878
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 213 bits (541), Expect = 4e-55
Identities = 115/301 (38%), Positives = 174/301 (57%), Gaps = 4/301 (1%)
Query: 14 NLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIK 73
+LTK FS E+ A+ K+PGP+G++ F K WD+V D + + F +
Sbjct: 805 DLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKP 864
Query: 74 GVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIK 133
+N T I +IPK+ NP L+DY PI+L LYKV++K L NRL++ + S+VSDSQ+AFI
Sbjct: 865 SINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIP 924
Query: 134 GN*ILDGILIANEVVDD---ARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLW 190
G I D ++IA+EV+ +R+ K + + D KAYD V+ +L+ M F W
Sbjct: 925 GRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKW 984
Query: 191 QKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQ 250
WI + + +VL+NG P + RG+RQGDPLSP+LF+L + + L+ A +
Sbjct: 985 IGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSG 1044
Query: 251 LFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSML 310
G +G G +THLQFADD+L + + N ++++ V ++E SG K+N KSM+
Sbjct: 1045 DLRGVRIGN-GAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMI 1103
Query: 311 T 311
T
Sbjct: 1104 T 1104
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 202 bits (515), Expect = 4e-52
Identities = 105/301 (34%), Positives = 174/301 (56%), Gaps = 4/301 (1%)
Query: 14 NLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIK 73
+LTK + +E+ +AV+ ++ +PGP+G + F +R W LVK+ + + F + G L +
Sbjct: 152 DLTKKVNEQEIYKAVFSINAESAPGPDGFTALFFQRQWPLVKNQIISDIELFFQTGILPE 211
Query: 74 GVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIK 133
N T + LIPK+ P R+ D PISL +YK+++K+L+ RL+ + +VS +QSAF+
Sbjct: 212 DWNHTHLCLIPKITKPARMADIRPISLCSVMYKIISKILSARLKKYLPVIVSPTQSAFVA 271
Query: 134 GN*ILDGILIANEVVDDAR---RMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLW 190
+ D I++A+E+V + R ++ K+ ++F+ D KAYD V+ +L +++ + F + W
Sbjct: 272 ERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKGILLALGFNSTW 331
Query: 191 QKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQ 250
W+ C+ + +VL+NG P + RGLRQGDPLSPFLF+L E ++ Q
Sbjct: 332 INWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEALIHILNQAEKIG 391
Query: 251 LFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSML 310
+G G ++ HL FADDTL+I + S L + L + +SG +N KS +
Sbjct: 392 KISGIQFNGTGP-SVNHLLFADDTLLICKASQLECAEIMHCLSQYGHISGQMINSEKSAI 450
Query: 311 T 311
T
Sbjct: 451 T 451
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 201 bits (510), Expect = 1e-51
Identities = 110/306 (35%), Positives = 183/306 (58%), Gaps = 16/306 (5%)
Query: 14 NLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIK 73
NL P + EEV++A + + K PGP+G++ ++FW+ + D + + F R+G + +
Sbjct: 423 NLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSGSIEE 482
Query: 74 GVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIK 133
G+N T I LIPK+ +++ D+ PISL +YKV+ K++ANRL+ ++ S++S++Q+AF+K
Sbjct: 483 GMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAAFVK 542
Query: 134 GN*ILDGILIANEV---VDDARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLW 190
G I D ILIA+E+ + + +E + + D KAYD V+ +L+ M + F W
Sbjct: 543 GRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFADHW 602
Query: 191 QKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQ 250
+ I EC+ + + VL+NG P E RGLRQGDPLSP+LF++ E +L+K + A+
Sbjct: 603 IRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTE---MLVKMLQSAE 659
Query: 251 LFN---GFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEE---VSGLKVN 304
N G V R G ++HL FADD++ + +N ++ ++ + EE SG +VN
Sbjct: 660 QKNQITGLKVAR-GAPPISHLLFADDSMFYCK---VNDEALGQIIRIIEEYSLASGQRVN 715
Query: 305 FHKSML 310
+ KS +
Sbjct: 716 YLKSSI 721
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 200 bits (509), Expect = 2e-51
Identities = 108/301 (35%), Positives = 171/301 (55%), Gaps = 4/301 (1%)
Query: 14 NLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIK 73
NL + + EV AV+ + +PGP+G + F ++ WDLVK + + F G L +
Sbjct: 401 NLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVKHQILTEIFGFFETGVLPQ 460
Query: 74 GVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIK 133
N T I LIPK+ +PQR++D PISL LYK+++K+L RL+ + ++VS +QSAF+
Sbjct: 461 DWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVP 520
Query: 134 GN*ILDGILIANEVVDDAR---RMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLW 190
I D IL+A+E++ R R+ KE + F+ D KAYD V+ +L+ +M + F W
Sbjct: 521 QRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKW 580
Query: 191 QKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQ 250
WI C+ + +VL+NG P RG+RQGDPLSP LF+L E ++ + A
Sbjct: 581 ISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAG 640
Query: 251 LFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSML 310
G + + +V++ HL FADDTL++ + + + L + ++SG +N +KS +
Sbjct: 641 KITG-IQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAI 699
Query: 311 T 311
T
Sbjct: 700 T 700
>At3g25485 unknown protein
Length = 979
Score = 199 bits (507), Expect = 3e-51
Identities = 112/313 (35%), Positives = 183/313 (57%), Gaps = 10/313 (3%)
Query: 2 LPFRKLSLREAGNLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQF 61
LPFR + + L +P + EE+K ++ S KSPGP+G + F K W+++ +F+
Sbjct: 353 LPFR-CTAEDRSRLMEPVTGEEIKTVLFFMSSDKSPGPDGFTTEFYKATWEIIGAEFIVA 411
Query: 62 LVDFHRNGKLIKGVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIG 121
+ F G L KGVNST +ALIPK + + DY PIS +YKV++K++A RL+ ++
Sbjct: 412 VKSFFEKGFLPKGVNSTILALIPKKFETKEMKDYRPISCCNVIYKVISKLIAKRLKEILP 471
Query: 122 SVVSDSQSAFIKGN*ILDGILIANEVVDDARRMD-KELLLFRVDFEKAYDSVDLKYLDMV 180
++ +QSAF+K ++ +L+A E+V D + + ++D KA+DSV +L+ V
Sbjct: 472 QFIAGNQSAFVKDRLLIQNLLLATEIVKDYHKESVSDRCAIKIDISKAFDSVQWSFLENV 531
Query: 181 MVTMNFPTLWQKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFN 240
+ ++NF + WI CI TA +V VNG + F+ RGLRQG LSP+LF++A + +
Sbjct: 532 LHSLNFSQEFIHWIMLCITTASFSVQVNGELVGFFNSSRGLRQGCSLSPYLFVIAMDVLS 591
Query: 241 VLMKQMAGAQLFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEV-- 298
++ + AG + F R + LTHL FADD +++ + VRS+ ++ +F+E
Sbjct: 592 KMLDRAAGFKKFG--YHPRCQTIGLTHLTFADDLMVLSDG---KVRSVEGIVSVFDEFAK 646
Query: 299 -SGLKVNFHKSML 310
SGLK++ KS +
Sbjct: 647 KSGLKISMEKSTI 659
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 199 bits (506), Expect = 4e-51
Identities = 111/335 (33%), Positives = 182/335 (54%), Gaps = 12/335 (3%)
Query: 15 LTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIKG 74
L + + +EV+ AV+ + ++PG +G + F WDL+ +D + F + +
Sbjct: 786 LLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWDLIGNDVCLMVRHFFESDVMDNQ 845
Query: 75 VNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIKG 134
+N T I LIPK+ +P+ ++DY PISL YK+++K+L RL+ +G V+SDSQ+AF+ G
Sbjct: 846 INQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCLGDVISDSQAAFVPG 905
Query: 135 N*ILDGILIANEV---VDDARRMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLWQ 191
I D +L+A+E+ + R + + D KAYD V+ +L+ VM+ + F W
Sbjct: 906 QNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWV 965
Query: 192 KWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQL 251
KWI C+ + VL+NG P + RG+RQGDPLSP+LFL AE + ++++ +
Sbjct: 966 KWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQ 1025
Query: 252 FNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSMLT 311
+G + + + ++HL FADD+L S N+ + + +EE SG K+N+ KS
Sbjct: 1026 IHGMKITK-DCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKS--- 1081
Query: 312 G*IYLSLGCGICIELSKREASFCLFGLTYWRGFSK 346
S+ G I +R+ L G+ RG K
Sbjct: 1082 -----SIIFGQKIPTMRRQRLHRLLGIDNVRGGGK 1111
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 196 bits (499), Expect = 3e-50
Identities = 108/298 (36%), Positives = 167/298 (55%), Gaps = 4/298 (1%)
Query: 14 NLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIK 73
+LTK S EEVK+A++ + K+PGP+G++ F + +WDL D ++ + +FH G +
Sbjct: 370 SLTKVISPEEVKRALFSLNPDKAPGPDGMTAFFYQHYWDLTGPDLIKLVQNFHSTGFFDE 429
Query: 74 GVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIK 133
+N T I LIPK P+++ ++ PISL YKV++KVL++RL+ ++ ++S++QSAF+
Sbjct: 430 RLNETNICLIPKTERPRKMAEFRPISLCNVSYKVISKVLSSRLKRLLPELISETQSAFVA 489
Query: 134 GN*ILDGILIANEVVDDAR---RMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLW 190
I D ILIA E R K+ + + D KAYD V+ +L +M+ M F W
Sbjct: 490 ERLITDNILIAQENFHALRTNPACKKKYMAIKTDMSKAYDRVEWSFLRALMLKMGFAQKW 549
Query: 191 QKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQ 250
WI CI + +L+NG P RG+RQGDP+SPFLF+L E +K
Sbjct: 550 VDWIIFCISSVSYKILLNGSPKGFIKPSRGIRQGDPISPFLFILCTEALVAKLKDAEWHG 609
Query: 251 LFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKS 308
G + R + +HL FADD+L + L + + +L L+ E SG ++N KS
Sbjct: 610 RIQGLQISRASP-STSHLLFADDSLFFCKADPLQGKEIIDILRLYGEASGQQLNPDKS 666
>At1g31030 F17F8.5
Length = 872
Score = 195 bits (496), Expect = 6e-50
Identities = 110/300 (36%), Positives = 176/300 (58%), Gaps = 9/300 (3%)
Query: 15 LTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIKG 74
LT+ S EE+K ++ KSPGP+G + F K WD++ +F + F + G L KG
Sbjct: 96 LTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQSFFQKGFLPKG 155
Query: 75 VNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIKG 134
+NS +ALIPK + + DY PIS LYKV++K++ANRL+ ++ ++++QSAF+K
Sbjct: 156 INSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIAENQSAFVKD 215
Query: 135 N*ILDGILIANEVVDDARRMD-KELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLWQKW 193
+++ +L+A E+V D + ++D KA+DSV +L +V MNF + W
Sbjct: 216 RLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHW 275
Query: 194 ISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQLFN 253
I+ CI TA +V VNG + F +RGLRQG LSP+LF++ + + ++ + AG + F
Sbjct: 276 INLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKMLDKAAGVRKF- 334
Query: 254 GFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEV---SGLKVNFHKSML 310
GF + + LTHL FADD +++ + RS+ +L +F+E SGL+++ KS L
Sbjct: 335 GF-HPKCQRLGLTHLSFADDLMVLSDG---KTRSIEGILEVFDEFCKRSGLRISLEKSTL 390
>At2g23880 putative non-LTR retroelement reverse transcriptase
Length = 1216
Score = 194 bits (493), Expect = 1e-49
Identities = 113/310 (36%), Positives = 175/310 (56%), Gaps = 4/310 (1%)
Query: 2 LPFRKLSLREAGNLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQF 61
LPFR S + LT+ + EE+K+ ++ KSPGP+G + F K W+++ D+ +
Sbjct: 158 LPFR-CSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIA 216
Query: 62 LVDFHRNGKLIKGVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIG 121
+ F G L KGVNST +ALIPK + + DY PIS LYK ++K+LANRL+ ++
Sbjct: 217 IQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILP 276
Query: 122 SVVSDSQSAFIKGN*ILDGILIANEVVDDARRMD-KELLLFRVDFEKAYDSVDLKYLDMV 180
+ +QSAF+K +++ +L+A E+V D + ++D KA+DS+ +L V
Sbjct: 277 KFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHV 336
Query: 181 MVTMNFPTLWQKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFN 240
+ MNFP + WIS C+ TA ++ VNG F RGLRQG LSP+LF+++ + +
Sbjct: 337 LAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLS 396
Query: 241 VLMKQMAGAQLFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSG 300
++ + AGA+ F R + LTHL FADD +I+ + +V + VL F G
Sbjct: 397 RMLDKAAGAREFG--YHPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLG 454
Query: 301 LKVNFHKSML 310
LK+ K+ L
Sbjct: 455 LKICMEKTTL 464
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 194 bits (492), Expect = 2e-49
Identities = 108/309 (34%), Positives = 168/309 (53%), Gaps = 3/309 (0%)
Query: 4 FRKLSLREAGNLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLV 63
F LS + +LTKPFS EV+ A+ +K+PGP+G F ++ W++V + +F++
Sbjct: 953 FTALSEADFSSLTKPFSPLEVEGAIRSMGKYKAPGPDGFQPVFYQQGWEVVGESVTKFVM 1012
Query: 64 DFHRNGKLIKGVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSV 123
DF +G + N + LI KV P+++ + PISL L+K + KV+ RL+ VI +
Sbjct: 1013 DFFSSGSFPQETNDVLVVLIAKVLKPEKITQFRPISLCNVLFKTITKVMVGRLKGVINKL 1072
Query: 124 VSDSQSAFIKGN*ILDGILIANEVVDDARRMD--KELLLFRVDFEKAYDSVDLKYLDMVM 181
+ +Q++FI G D I++ EVV RR K +L ++D EKAYD + L+ +
Sbjct: 1073 IGPAQTSFIPGRLSTDNIVVVQEVVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDLLEDTL 1132
Query: 182 VTMNFPTLWQKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNV 241
P W +WI +C+ +L NG + F RGLRQGDPLSP+LF+L E
Sbjct: 1133 KAAGLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCH 1192
Query: 242 LMKQMAGAQLFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGL 301
L++ A+ + + + G L+H+ FADD ++ E S +R +R VL F SG
Sbjct: 1193 LIESSIAAKKWKPIKISQSGP-RLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQ 1251
Query: 302 KVNFHKSML 310
KV+ KS +
Sbjct: 1252 KVSLEKSKI 1260
>At3g44650 putative protein
Length = 762
Score = 193 bits (490), Expect = 3e-49
Identities = 107/303 (35%), Positives = 173/303 (56%), Gaps = 15/303 (4%)
Query: 15 LTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIKG 74
LT+ S EE+K+ ++ + KSPGP+G + F K W+++ +F+ + F G L KG
Sbjct: 2 LTRVVSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPKG 61
Query: 75 VNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIKG 134
VNST +ALIPK + + DY PIS +YKV++K+LANRL+ ++ ++ +QS+F+K
Sbjct: 62 VNSTILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVKD 121
Query: 135 N*ILDGILIANEVVDDARRMD-KELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLWQKW 193
+++ +L+A ++V D + E ++D KA DSV +L + M+FP ++ W
Sbjct: 122 RLLIENVLLATDLVKDYHKDSISERCAIKIDISKASDSVQWSFLINTLTAMHFPEMFIHW 181
Query: 194 ISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQLFN 253
I CI T +V VNG F RGLRQG LSP+LF++ + + L+ ++ G
Sbjct: 182 IRLCITTPSFSVQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLSKLLDKVVG----- 236
Query: 254 GFLVGRVG------EVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHK 307
+GR+G + LTHL FADD +I+ + ++ + V LF + SGLK++ K
Sbjct: 237 ---IGRIGYHPHCKRMGLTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEK 293
Query: 308 SML 310
S +
Sbjct: 294 STI 296
>At1g24640 hypothetical protein
Length = 1270
Score = 192 bits (488), Expect = 5e-49
Identities = 103/301 (34%), Positives = 166/301 (54%), Gaps = 4/301 (1%)
Query: 14 NLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIK 73
+L S +E+K+AV+ +PGP+G+S F + +W V + + F +G +
Sbjct: 386 SLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKFFADGIMPA 445
Query: 74 GVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIK 133
N T + LIPK +P + D PISL LYK+++K++A RL+ + +VSD+QSAF+
Sbjct: 446 EWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDTQSAFVS 505
Query: 134 GN*ILDGILIANEVVDDAR---RMDKELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLW 190
I D IL+A+E+V + R+ E + + D KAYD V+ YL +++++ F W
Sbjct: 506 ERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKW 565
Query: 191 QKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQ 250
WI C+ + +VL+N CP ++RGLRQGDPLSPFLF+L EG L+ +
Sbjct: 566 VNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLNKAQWEG 625
Query: 251 LFNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSML 310
G G + + HL FADD+L + + S ++ +L ++ +G +N +KS +
Sbjct: 626 ALEGIQFSENGPM-VHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINLNKSSI 684
Query: 311 T 311
T
Sbjct: 685 T 685
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 187 bits (476), Expect = 1e-47
Identities = 106/299 (35%), Positives = 164/299 (54%), Gaps = 4/299 (1%)
Query: 15 LTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIKG 74
LT + EV+ A++ K+PGP+G++ F ++ W ++K D + + F + G K
Sbjct: 208 LTADATECEVRAALFMIHPEKAPGPDGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKR 267
Query: 75 VNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIKG 134
+N+T I LIPK P R+ + PISL YKV++K+L RL+ V+ +++S++QSAF+ G
Sbjct: 268 LNTTNICLIPKTERPTRMTELRPISLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDG 327
Query: 135 N*ILDGILIANEVVDDARRMDK---ELLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLWQ 191
I D ILIA E+ R + + + D KAYD V+ +++ ++ M F W
Sbjct: 328 RLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWI 387
Query: 192 KWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQL 251
WI CI T + VL+NG P ERGLRQGDPLSP+LF+L E +++ L
Sbjct: 388 SWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNL 447
Query: 252 FNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSML 310
G V ++HL FADD+L + + + +L +E VSG ++NF KS +
Sbjct: 448 ITGIKVATPSPA-VSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSI 505
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 186 bits (473), Expect = 3e-47
Identities = 100/300 (33%), Positives = 166/300 (55%), Gaps = 4/300 (1%)
Query: 15 LTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIKG 74
L K S E+K+A++ + K+PGP+G S +F +WD+++ D + + F + L
Sbjct: 365 LIKISSLLEIKEALFSISADKAPGPDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPR 424
Query: 75 VNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIKG 134
+N T + LIPK++ P++++DY PI+L YK++AK+L RL+ + ++S QSAF+ G
Sbjct: 425 LNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPG 484
Query: 135 N*ILDGILIANEVVDDARRMDKE---LLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLWQ 191
I D +LI +E++ R + + + D KAYD + +L V++ + F W
Sbjct: 485 RAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWI 544
Query: 192 KWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQL 251
+W+ +C+ T + L+NG P RGLRQGDPLSP+LF+L E + L ++ +
Sbjct: 545 RWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGV 604
Query: 252 FNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSMLT 311
G V R G + HL FADDT+ + + ++ +L +E SG +N KS +T
Sbjct: 605 MVGIRVAR-GSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAIT 663
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 185 bits (469), Expect = 8e-47
Identities = 99/300 (33%), Positives = 164/300 (54%), Gaps = 4/300 (1%)
Query: 15 LTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDFHRNGKLIKG 74
LT+ + EEVK AV+ ++ K+PGP+G + F +W ++ D + + F + +
Sbjct: 319 LTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRR 378
Query: 75 VNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVSDSQSAFIKG 134
+N T I LIPK P+++ DY PI+L YK++AK++ R++ ++ ++S++QSAF+ G
Sbjct: 379 MNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPG 438
Query: 135 N*ILDGILIANEVVDDARRMDKE---LLLFRVDFEKAYDSVDLKYLDMVMVTMNFPTLWQ 191
I D +LI +EV+ R + + + D KAYD V+ +L V+ F ++W
Sbjct: 439 RVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWI 498
Query: 192 KWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMKQMAGAQL 251
W+ EC+ + + L+NG P + RGLRQGDPLSP LF+L E + L + +
Sbjct: 499 DWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQ 558
Query: 252 FNGFLVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKVNFHKSMLT 311
G V + + HL FADDT+ + + + +L + + SG +NFHKS +T
Sbjct: 559 LPGVRVS-INGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSVT 617
>At2g11240 pseudogene
Length = 1044
Score = 182 bits (462), Expect = 5e-46
Identities = 108/317 (34%), Positives = 173/317 (54%), Gaps = 16/317 (5%)
Query: 5 RKLSLREAGNLTKPF-----SHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFM 59
R +++EA KPF + EE+K A + + K+PGP+G S +F + W V + +
Sbjct: 238 RAATIKEA---IKPFISPEQNPEEIKSACFSIHADKAPGPDGFSASFFQSNWMTVGPNIV 294
Query: 60 QFLVDFHRNGKLIKGVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNV 119
+ F + L +N T I LIPK+ + +R+ DY PI+L YK+++K+L+ RL+ +
Sbjct: 295 LEIQSFFSSSTLQPTINKTHITLIPKIQSLKRMVDYRPIALCTVFYKIISKLLSRRLQPI 354
Query: 120 IGSVVSDSQSAFIKGN*ILDGILIANEVVDDARRMDKELLLF---RVDFEKAYDSVDLKY 176
+ ++S++QSAF+ D +LI +E + + + E F + + KAYD ++ +
Sbjct: 355 LQEIISENQSAFVPKRASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYDRIEWDF 414
Query: 177 LDMVMVTMNFPTLWQKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAA 236
+ +VM M F W WI +CI T + L+NG + ERGLRQGDPLSPFLF++ +
Sbjct: 415 IKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICS 474
Query: 237 EGFNVLMKQMAGAQLFNGFLVGRV--GEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLML 294
E + L ++ AQL L RV G + HL FADDT+ + ++ +L
Sbjct: 475 EVLSGLCRK---AQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKK 531
Query: 295 FEEVSGLKVNFHKSMLT 311
+EE SG +N KS +T
Sbjct: 532 YEEASGQMINKSKSAIT 548
>At2g28980 putative non-LTR retroelement reverse transcriptase
Length = 1529
Score = 182 bits (461), Expect = 7e-46
Identities = 106/307 (34%), Positives = 170/307 (54%), Gaps = 5/307 (1%)
Query: 6 KLSLREAGNLTKPFSHEEVKQAVWDCDSFKSPGPNGISFNFIKRFWDLVKDDFMQFLVDF 65
+ S+ + LT+ + EE+++ ++ + KSPGP+G + F K W L DF+ + F
Sbjct: 737 RCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSF 796
Query: 66 HRNGKLIKGVNSTFIALIPKVNNPQRLNDYMPISLVGCLYKVLAKVLANRLRNVIGSVVS 125
G L KG+N+T +ALIPK + + DY PIS LYKV++K+LANRL+ ++ S +
Sbjct: 797 FVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFIL 856
Query: 126 DSQSAFIKGN*ILDGILIANEVVDDARRMD-KELLLFRVDFEKAYDSVDLKYLDMVMVTM 184
+QSAF+K +++ +L+A E+V D + ++D KA+DSV ++L + +
Sbjct: 857 QNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEAL 916
Query: 185 NFPTLWQKWISECIGTAKAAVLVNGCPMEEFSIERGLRQGDPLSPFLFLLAAEGFNVLMK 244
NFP ++ WI CI TA +V VNG F RGLRQG LSP+LF++ NVL
Sbjct: 917 NFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVIC---MNVLSH 973
Query: 245 QMAGAQLFNGF-LVGRVGEVNLTHLQFADDTLIIGEKSWLNVRSMRAVLMLFEEVSGLKV 303
+ A + + ++ LTHL FADD ++ + ++ + V F SGL++
Sbjct: 974 MIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQI 1033
Query: 304 NFHKSML 310
+ KS +
Sbjct: 1034 SLEKSTI 1040
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.344 0.156 0.540
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,919,893
Number of Sequences: 26719
Number of extensions: 589248
Number of successful extensions: 2452
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2275
Number of HSP's gapped (non-prelim): 94
length of query: 651
length of database: 11,318,596
effective HSP length: 106
effective length of query: 545
effective length of database: 8,486,382
effective search space: 4625078190
effective search space used: 4625078190
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 63 (28.9 bits)
Medicago: description of AC147000.3