BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147000.1 - phase: 0 
         (504 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g37650 SHORT-ROOT (SHR)                                            568  e-162
At2g04890 putative SCARECROW gene regulator                           203  2e-52
At3g49950 putative protein                                            199  3e-51
At1g50600 scarecrow-like 5 (SCL5)                                     196  3e-50
At5g48150 SCARECROW gene regulator-like                               188  5e-48
At1g21450 scarecrow-like 1 (SCL1)                                     178  5e-45
At3g03450 RGA1-like protein                                           173  2e-43
At1g66350 gibberellin regulatory protein like                         170  1e-42
At5g17490 RGA-like protein                                            162  5e-40
At3g13840 hypothetical protein                                        159  3e-39
At2g01570 putative RGA1, giberellin repsonse modulation protein       159  3e-39
At3g54220 SCARECROW1                                                  157  1e-38
At5g66770 SCARECROW gene regulator                                    153  2e-37
At1g14920 signal response protein (GAI)                               152  3e-37
At2g29060 putative SCARECROW gene regulator                           150  1e-36
At1g55580 unknown protein                                             148  8e-36
At1g07530 transcription factor scarecrow-like 14, putative            142  6e-34
At2g37650 scarecrow-like 9 (SCL9)                                     141  7e-34
At1g63100 transcription factor SCARECROW, putative                    141  7e-34
At5g52510 scarecrow-like 8 (SCL8)                                     136  2e-32

>At4g37650 SHORT-ROOT (SHR)
          Length = 531

 Score =  568 bits (1463), Expect = e-162
 Identities = 312/541 (57%), Positives = 390/541 (71%), Gaps = 48/541 (8%)

Query: 1   MDTLFRLVNFQQQQQQYQPDPSLNSTTTLT-TSSSSRSSRQTTYHY-YNQQEEDEECFNN 58
           MDTLFRLV+ QQQQQ    D  + + ++L+ TS+++  S QT YHY + Q +  EECFN 
Sbjct: 1   MDTLFRLVSLQQQQQS---DSIITNQSSLSRTSTTTTGSPQTAYHYNFPQNDVVEECFN- 56

Query: 59  FYYMDHNNNNDEDLSSSSSKQHYYTYPYAST--TTITTPNTTYN--TINTPTTT------ 108
            ++MD     +EDLSSSSS  +++ +   +T  +  TTP T Y+  T +TP++T      
Sbjct: 57  -FFMD-----EEDLSSSSSHHNHHNHNNPNTYYSPFTTP-TQYHPATSSTPSSTAAAAAL 109

Query: 109 -----------DNYSFSPSHDYFNFEFSGHS-WSQNILLETARAFSDNNTNRIQQLMWML 156
                      D  +FS      +F+FS ++ W+ ++LLE ARAFSD +T R QQ++W L
Sbjct: 110 ASPYSSSGHHNDPSAFSIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTL 169

Query: 157 NELSTPYGDTDQKLSSYFLQALFSRMNDAGDRTYKTLTTAS--EKTCSFDSTRKMLLKFQ 214
           NELS+PYGDT+QKL+SYFLQALF+RM  +G+R Y+T+ TA+  EKTCSF+STRK +LKFQ
Sbjct: 170 NELSSPYGDTEQKLASYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQ 229

Query: 215 EVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTYCTQWPTLLEALATRSDDTPHLRLT 274
           EVSPW TFGHVAANGAILEA++G  K+HI+DIS+T+CTQWPTLLEALATRSDDTPHLRLT
Sbjct: 230 EVSPWATFGHVAANGAILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLT 289

Query: 275 TVVTAISGGSVQ----KVMKEIGSRMEKFARLMGVPFKFKII--FSDLRELNLCDLDIKE 328
           TVV A    + Q    ++MKEIG+RMEKFARLMGVPFKF II    DL E +L +LD+K 
Sbjct: 290 TVVVANKFVNDQTASHRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKP 349

Query: 329 DEALAINCVNSLHSISGAGNHRDLFISLLRGLEPRVLTIVEEEADL----EVCFGSDFVE 384
           DE LAINCV ++H I+  G+ RD  IS  R L PR++T+VEEEADL    E  F  +F+ 
Sbjct: 350 DEVLAINCVGAMHGIASRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLR 409

Query: 385 GFKECLRWFRVYFEALDESFSRTSSERLMLEREAGRGIVDLVACDPYESVERRETAARWR 444
           GF ECLRWFRV FE+ +ESF RTS+ERLMLER AGR IVDLVAC+P +S ERRETA +W 
Sbjct: 410 GFGECLRWFRVCFESWEESFPRTSNERLMLERAAGRAIVDLVACEPSDSTERRETARKWS 469

Query: 445 RRLHGGGFNTVSFSDEVCDDVRALLRRYKEG-WSMTSSDGDTGIFLSWKDKPVVWASVWR 503
           RR+   GF  V +SDEV DDVRALLRRYKEG WSM       GIFL W+D+PVVWAS WR
Sbjct: 470 RRMRNSGFGAVGYSDEVADDVRALLRRYKEGVWSMVQCPDAAGIFLCWRDQPVVWASAWR 529

Query: 504 P 504
           P
Sbjct: 530 P 530


>At2g04890 putative SCARECROW gene regulator
          Length = 413

 Score =  203 bits (516), Expect = 2e-52
 Identities = 118/376 (31%), Positives = 202/376 (53%), Gaps = 20/376 (5%)

Query: 133 ILLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGDRTYKT 192
           +L+  A+A S+NN    +  M  L  + +  G+  Q+L +Y L+ L +R+  +G   YK+
Sbjct: 53  VLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKS 112

Query: 193 LTTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTYCT 252
           L +   ++  F S   +L    EV P+  FG+++ANGAI EA++   ++HIID      +
Sbjct: 113 LQSREPESYEFLSYVYVL---HEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGS 169

Query: 253 QWPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFKII 312
           QW  L++A A R    P++R    +T +  GSV   +K+   R+EK A+   VPF+F  +
Sbjct: 170 QWIALIQAFAARPGGAPNIR----ITGVGDGSVLVTVKK---RLEKLAKKFDVPFRFNAV 222

Query: 313 FSDLRELNLCDLDIKEDEALAINCVNSLHSISGAG----NHRDLFISLLRGLEPRVLTIV 368
                E+ + +LD+++ EAL +N    LH +        NHRD  + +++ L P+V+T+V
Sbjct: 223 SRPSCEVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLV 282

Query: 369 EEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREA-GRGIVDLVA 427
           E+E +      S F+  F E L ++   FE++D    R   ER+ +E+    R +V+++A
Sbjct: 283 EQECNTNT---SPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIA 339

Query: 428 CDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDTGI 487
           C+  E +ER E   +W+ R    GF     S  +   +RALLR Y  G+++   DG   +
Sbjct: 340 CEGAERIERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYAIEERDG--AL 397

Query: 488 FLSWKDKPVVWASVWR 503
           +L W D+ +V +  W+
Sbjct: 398 YLGWMDRILVSSCAWK 413


>At3g49950 putative protein
          Length = 410

 Score =  199 bits (506), Expect = 3e-51
 Identities = 127/393 (32%), Positives = 202/393 (51%), Gaps = 24/393 (6%)

Query: 128 SWSQNILLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGD 187
           ++ + +LL  A A   N+     Q++W+LN ++ P GD+ Q+L+S FL+AL SR      
Sbjct: 25  NFMEQLLLHCATAIDSNDAALTHQILWVLNNIAPPDGDSTQRLTSAFLRALLSRAVSKTP 84

Query: 188 RTYKTLTTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDIS 247
               T++   +       +   L  F +++PW  FG +AAN AIL A+EG   +HI+D+S
Sbjct: 85  TLSSTISFLPQADELHRFSVVELAAFVDLTPWHRFGFIAANAAILTAVEGYSTVHIVDLS 144

Query: 248 NTYCTQWPTLLEALATRSDDTPHLRLTTVVTAISGGS--VQKVMKEIGSRMEKFARLMGV 305
            T+C Q PTL++A+A+R +  P L   TVV++       +    +E+GS++  FA    +
Sbjct: 145 LTHCMQIPTLIDAMASRLNKPPPLLKLTVVSSSDHFPPFINISYEELGSKLVNFATTRNI 204

Query: 306 PFKFKII---FSD-----LRELNLCDLDIKEDEALAINCVNSLHSI------SGAGNHRD 351
             +F I+   +SD     L++L +       +EAL +NC   L  I      S + + R 
Sbjct: 205 TMEFTIVPSTYSDGFSSLLQQLRIYPSSF--NEALVVNCHMMLRYIPEEPLTSSSSSLRT 262

Query: 352 LFISLLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSER 411
           +F+  LR L PR++T++EE+ DL      + V   K    +F + F+  D   S    +R
Sbjct: 263 VFLKQLRSLNPRIVTLIEEDVDLT---SENLVNRLKSAFNYFWIPFDTTDTFMSE---QR 316

Query: 412 LMLEREAGRGIVDLVACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRR 471
              E E    I ++VA +  E VER ET  RW  R+    F  V   ++   DV+A+L  
Sbjct: 317 RWYEAEISWKIENVVAKEGAERVERTETKRRWIERMREAEFGGVRVKEDAVADVKAMLEE 376

Query: 472 YKEGWSMTSSDGDTGIFLSWKDKPVVWASVWRP 504
           +  GW M   D D  + L+WK   VV+A+VW P
Sbjct: 377 HAVGWGMKKEDDDESLVLTWKGHSVVFATVWVP 409


>At1g50600 scarecrow-like 5 (SCL5)
          Length = 597

 Score =  196 bits (497), Expect = 3e-50
 Identities = 137/493 (27%), Positives = 235/493 (46%), Gaps = 25/493 (5%)

Query: 21  PSLNSTTTLTTSSSSRSSRQTTYHYYNQQEEDEECFNNFYYMDHNNNNDEDLSSSSSKQH 80
           P LN+    ++S++S SS ++     N        FNN    ++NN+     S++++ + 
Sbjct: 120 PCLNNKNN-SSSTTSFSSNESPISQANNNNLSR--FNNHSPEENNNSPLSGSSATNTNET 176

Query: 81  YYTYPYAST-TTITTPNTTYNTINTPTTTDNYSFSPSHDYFNFEFSGHSWSQNILLETAR 139
             +       T +  P+   +  N       +    S  Y + E       + +L E A+
Sbjct: 177 ELSLMLKDLETAMMEPDVDNSYNNQGGFGQQHGVVSSAMYRSMEMISRGDLKGVLYECAK 236

Query: 140 AFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGDRTYKTLTTASEK 199
           A  + +      L+  L ++ +  G+  Q+L +Y L+ L +R+  +G   YK L      
Sbjct: 237 AVENYDLEMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCK--- 293

Query: 200 TCSFDSTRKMLLKFQ----EVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTYCTQWP 255
               D T   LL +     E  P+  FG+ +ANGAI EA++    +HIID   +   QW 
Sbjct: 294 ----DPTGPELLTYMHILYEACPYFKFGYESANGAIAEAVKNESFVHIIDFQISQGGQWV 349

Query: 256 TLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIFSD 315
           +L+ AL  R    P++R+T +    S  + Q  ++ +G R+ K A + GVPF+F      
Sbjct: 350 SLIRALGARPGGPPNVRITGIDDPRSSFARQGGLELVGQRLGKLAEMCGVPFEFHGAALC 409

Query: 316 LRELNLCDLDIKEDEALAINCVNSLHSISGAG----NHRDLFISLLRGLEPRVLTIVEEE 371
             E+ +  L ++  EALA+N    LH +        NHRD  + L++ L P V+T+VE+E
Sbjct: 410 CTEVEIEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKHLSPNVVTLVEQE 469

Query: 372 ADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREA-GRGIVDLVACDP 430
           A+      + F+  F E +  +   FE++D   +R   ER+ +E+    R +V+L+AC+ 
Sbjct: 470 ANTNT---APFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLIACEG 526

Query: 431 YESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDTGIFLS 490
            E  ER E   +WR R H  GF     S  V   ++ LL  Y E +++   DG   ++L 
Sbjct: 527 VEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEKYTLEERDG--ALYLG 584

Query: 491 WKDKPVVWASVWR 503
           WK++P++ +  WR
Sbjct: 585 WKNQPLITSCAWR 597


>At5g48150 SCARECROW gene regulator-like
          Length = 490

 Score =  188 bits (478), Expect = 5e-48
 Identities = 108/375 (28%), Positives = 196/375 (51%), Gaps = 12/375 (3%)

Query: 134 LLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGDRTYKTL 193
           L+  A+A S+N+      +M  L ++ +  G+  Q+L +Y L+ L +++  +G   YK L
Sbjct: 123 LVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKAL 182

Query: 194 TTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTYCTQ 253
               E   +   +   +L   EV P+  FG+++ANGAI EA++   ++HIID      +Q
Sbjct: 183 NRCPEPASTELLSYMHIL--YEVCPYFKFGYMSANGAIAEAMKEENRVHIIDFQIGQGSQ 240

Query: 254 WPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIF 313
           W TL++A A R    P +R+T +    S  +    +  +G+R+ K A+   VPF+F  + 
Sbjct: 241 WVTLIQAFAARPGGPPRIRITGIDDMTSAYARGGGLSIVGNRLAKLAKQFNVPFEFNSVS 300

Query: 314 SDLRELNLCDLDIKEDEALAINCVNSLHSIS----GAGNHRDLFISLLRGLEPRVLTIVE 369
             + E+   +L ++  EALA+N    LH +        NHRD  + +++ L P+V+T+VE
Sbjct: 301 VSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVE 360

Query: 370 EEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREA-GRGIVDLVAC 428
           +E++      + F   F E + ++   FE++D +  R   +R+ +E+    R +V+++AC
Sbjct: 361 QESNTNT---AAFFPRFMETMNYYAAMFESIDVTLPRDHKQRINVEQHCLARDVVNIIAC 417

Query: 429 DPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDTGIF 488
           +  + VER E   +WR R    GF     S  V   +++LLR Y + + +   DG   ++
Sbjct: 418 EGADRVERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSLLRNYSDKYRLEERDG--ALY 475

Query: 489 LSWKDKPVVWASVWR 503
           L W  + +V +  W+
Sbjct: 476 LGWMHRDLVASCAWK 490


>At1g21450 scarecrow-like 1 (SCL1)
          Length = 593

 Score =  178 bits (452), Expect = 5e-45
 Identities = 116/379 (30%), Positives = 196/379 (51%), Gaps = 14/379 (3%)

Query: 131 QNILLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGDRTY 190
           + IL+  ARA S+        ++  L ++ +  GD  Q++++Y ++ L +RM  +G   Y
Sbjct: 223 KQILISCARALSEGKLEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIY 282

Query: 191 KTLTTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTY 250
           + L      +    +  ++L    EV P   FG +AANGAILEA++G  ++HIID     
Sbjct: 283 RALKCKEPPSDERLAAMQVLF---EVCPCFKFGFLAANGAILEAIKGEEEVHIIDFDINQ 339

Query: 251 CTQWPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFK 310
             Q+ TL+ ++A      P LRLT +    S       ++ IG R+E+ A   GV FKFK
Sbjct: 340 GNQYMTLIRSIAELPGKRPRLRLTGIDDPESVQRSIGGLRIIGLRLEQLAEDNGVSFKFK 399

Query: 311 IIFSDLRELNLCDLDIKEDEALAINCVNSLHSISGAG----NHRDLFISLLRGLEPRVLT 366
            + S    ++   L  K  E L +N    LH +        N RD  + +++ L P+++T
Sbjct: 400 AMPSKTSIVSPSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVT 459

Query: 367 IVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREA-GRGIVDL 425
           +VE++ +      S F   F E   ++   FE+LD +  R S ER+ +ER+   R IV++
Sbjct: 460 VVEQDVNTNT---SPFFPRFIEAYEYYSAVFESLDMTLPRESQERMNVERQCLARDIVNI 516

Query: 426 VACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLR-RYKEGWSMTSSDGD 484
           VAC+  E +ER E A +WR R+   GFN    S +V ++++ L++ +Y   + +    G+
Sbjct: 517 VACEGEERIERYEAAGKWRARMMMAGFNPKPMSAKVTNNIQNLIKQQYCNKYKLKEEMGE 576

Query: 485 TGIFLSWKDKPVVWASVWR 503
             +   W++K ++ AS WR
Sbjct: 577 --LHFCWEEKSLIVASAWR 593


>At3g03450 RGA1-like protein
          Length = 547

 Score =  173 bits (438), Expect = 2e-43
 Identities = 113/376 (30%), Positives = 192/376 (51%), Gaps = 20/376 (5%)

Query: 134 LLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGDRTYKTL 193
           L+  A A    N N    L+  +  L+        K+++YF QAL  R+    D T +T 
Sbjct: 184 LVACAEAIHQENLNLADALVKRVGTLAGSQAGAMGKVATYFAQALARRIYR--DYTAETD 241

Query: 194 TTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTYCTQ 253
             A+    SF+   +M   F E  P+  F H  AN AILEA+    ++H+ID+      Q
Sbjct: 242 VCAAVNP-SFEEVLEM--HFYESCPYLKFAHFTANQAILEAVTTARRVHVIDLGLNQGMQ 298

Query: 254 WPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIF 313
           WP L++ALA R    P  RLT +    +  S    ++++G ++ +FA+ MGV F+FK + 
Sbjct: 299 WPALMQALALRPGGPPSFRLTGIGPPQTENSDS--LQQLGWKLAQFAQNMGVEFEFKGLA 356

Query: 314 SDLRELNLCDLDIK------EDEALAINCVNSLHSISGAGNHRDLFISLLRGLEPRVLTI 367
           ++    +L DL+ +      E E L +N V  LH +       +  ++ ++ ++P ++T+
Sbjct: 357 AE----SLSDLEPEMFETRPESETLVVNSVFELHRLLARSGSIEKLLNTVKAIKPSIVTV 412

Query: 368 VEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREAGRGIVDLVA 427
           VE+EA+     G  F++ F E L ++   F++L++S+S  S +R+M E   GR I+++VA
Sbjct: 413 VEQEANHN---GIVFLDRFNEALHYYSSLFDSLEDSYSLPSQDRVMSEVYLGRQILNVVA 469

Query: 428 CDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDTGI 487
            +  + VER ETAA+WR R+   GF+ +            LL  Y  G      + D  +
Sbjct: 470 AEGSDRVERHETAAQWRIRMKSAGFDPIHLGSSAFKQASMLLSLYATGDGYRVEENDGCL 529

Query: 488 FLSWKDKPVVWASVWR 503
            + W+ +P++  S W+
Sbjct: 530 MIGWQTRPLITTSAWK 545


>At1g66350 gibberellin regulatory protein like
          Length = 511

 Score =  170 bits (431), Expect = 1e-42
 Identities = 115/374 (30%), Positives = 191/374 (50%), Gaps = 27/374 (7%)

Query: 134 LLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGDRTYKTL 193
           LL  A A   NN      L+  +  L++      +K+++YF + L  R+       Y+  
Sbjct: 156 LLACAEAVQQNNLKLADALVKHVGLLASSQAGAMRKVATYFAEGLARRI-------YRIY 208

Query: 194 TTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTYCTQ 253
                   SF  T  + + F E  P+  F H  AN AILE      K+H+ID+   +  Q
Sbjct: 209 PRDDVALSSFSDT--LQIHFYESCPYLKFAHFTANQAILEVFATAEKVHVIDLGLNHGLQ 266

Query: 254 WPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFK-II 312
           WP L++ALA R +  P  RLT +  +++       ++E+G ++ + A  +GV F+FK I 
Sbjct: 267 WPALIQALALRPNGPPDFRLTGIGYSLTD------IQEVGWKLGQLASTIGVNFEFKSIA 320

Query: 313 FSDLRELNLCDLDIKED-EALAINCVNSLHSISGAGNHRDLFISLLRGLEPRVLTIVEEE 371
            ++L +L    LDI+   E++A+N V  LH +       D F+S ++ + P ++T+VE+E
Sbjct: 321 LNNLSDLKPEMLDIRPGLESVAVNSVFELHRLLAHPGSIDKFLSTIKSIRPDIMTVVEQE 380

Query: 372 ADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREAGRGIVDLVACDPY 431
           A+     G+ F++ F E L ++   F++L+      S +R+M E   GR I++LVAC+  
Sbjct: 381 ANHN---GTVFLDRFTESLHYYSSLFDSLE---GPPSQDRVMSELFLGRQILNLVACEGE 434

Query: 432 ESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRY--KEGWSMTSSDGDTGIFL 489
           + VER ET  +WR R   GGF  VS           LL  Y   +G+++  ++G   + L
Sbjct: 435 DRVERHETLNQWRNRFGLGGFKPVSIGSNAYKQASMLLALYAGADGYNVEENEG--CLLL 492

Query: 490 SWKDKPVVWASVWR 503
            W+ +P++  S WR
Sbjct: 493 GWQTRPLIATSAWR 506


>At5g17490 RGA-like protein
          Length = 523

 Score =  162 bits (409), Expect = 5e-40
 Identities = 107/376 (28%), Positives = 188/376 (49%), Gaps = 26/376 (6%)

Query: 134 LLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGDRTYKTL 193
           L+  A A    N +    L+  +  L+        K+++YF +AL  R+       Y+  
Sbjct: 161 LVACAEAVQLENLSLADALVKRVGLLAASQAGAMGKVATYFAEALARRI-------YRIH 213

Query: 194 TTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTYCTQ 253
            +A+    SF+   +M   F +  P+  F H  AN AILEA+  +  +H+ID+      Q
Sbjct: 214 PSAAAIDPSFEEILQM--NFYDSCPYLKFAHFTANQAILEAVTTSRVVHVIDLGLNQGMQ 271

Query: 254 WPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIF 313
           WP L++ALA R    P  RLT     +   S ++ ++E+G ++ + A+ +GV FKF  + 
Sbjct: 272 WPALMQALALRPGGPPSFRLT----GVGNPSNREGIQELGWKLAQLAQAIGVEFKFNGLT 327

Query: 314 SDLRELNLCDLDIK------EDEALAINCVNSLHSISGAGNHRDLFISLLRGLEPRVLTI 367
           ++     L DL+        E E L +N V  LH +       +  ++ ++ ++P ++T+
Sbjct: 328 TE----RLSDLEPDMFETRTESETLVVNSVFELHPVLSQPGSIEKLLATVKAVKPGLVTV 383

Query: 368 VEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREAGRGIVDLVA 427
           VE+EA+     G  F++ F E L ++   F++L++     S +R+M E   GR I++LVA
Sbjct: 384 VEQEANHN---GDVFLDRFNEALHYYSSLFDSLEDGVVIPSQDRVMSEVYLGRQILNLVA 440

Query: 428 CDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDTGI 487
            +  + +ER ET A+WR+R+   GF+ V+   +       LL     G      + D  +
Sbjct: 441 TEGSDRIERHETLAQWRKRMGSAGFDPVNLGSDAFKQASLLLALSGGGDGYRVEENDGSL 500

Query: 488 FLSWKDKPVVWASVWR 503
            L+W+ KP++ AS W+
Sbjct: 501 MLAWQTKPLIAASAWK 516


>At3g13840 hypothetical protein
          Length = 510

 Score =  159 bits (403), Expect = 3e-39
 Identities = 117/386 (30%), Positives = 196/386 (50%), Gaps = 30/386 (7%)

Query: 129 WSQNILLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGDR 188
           W++ +L   A A + +N++R+Q  + +L+EL++  GD +++L+++ L+AL   ++ +   
Sbjct: 144 WAEKLLNPCALAITASNSSRVQHYLCVLSELASSSGDANRRLAAFGLRALQHHLSSSSVS 203

Query: 189 T--YKTLTTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPK----LH 242
           +  +   T AS +   F  T   LLKF EVSPW    +  AN AIL+ L  +PK    LH
Sbjct: 204 SSFWPVFTFASAEVKMFQKT---LLKFYEVSPWFALPNNMANSAILQILAQDPKDKKDLH 260

Query: 243 IIDISNTYCTQWPTLLEALATRSDDTP-HLRLTTV--VTAISGGSVQKVMKEIGSRMEKF 299
           IIDI  ++  QWPTLLEAL+ R +  P  +R+T +  +TA    SV       GS++  F
Sbjct: 261 IIDIGVSHGMQWPTLLEALSCRLEGPPPRVRITVISDLTADIPFSVGPPGYNYGSQLLGF 320

Query: 300 ARLMGVPFKFKIIFSDLRELNLCDLDIKEDEALAINCVNSLHSISGAGN-HRDLFISLLR 358
           AR +    K  +  S L +L L  +D    E L +     LH +  + N  R   +  +R
Sbjct: 321 ARSL----KINLQISVLDKLQL--IDTSPHENLIVCAQFRLHHLKHSINDERGETLKAVR 374

Query: 359 GLEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSE-RLMLERE 417
            L P+ + + E     E    +DF  GF + L +   + ++    F   +SE R ++E E
Sbjct: 375 SLRPKGVVLCENNG--ECSSSADFAAGFSKKLEYVWKFLDSTSSGFKEENSEERKLMEGE 432

Query: 418 AGRGIVDLVACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWS 477
           A + +++        + +  E   +W  R+   GF   +F ++  D  ++LLR+Y   W 
Sbjct: 433 ATKVLMN--------AGDMNEGKEKWYERMREAGFFVEAFEEDAVDGAKSLLRKYDNNWE 484

Query: 478 MTSSDGDTGIFLSWKDKPVVWASVWR 503
           +   DGDT   L WK + V + S+W+
Sbjct: 485 IRMEDGDTFAGLMWKGEAVSFCSLWK 510


>At2g01570 putative RGA1, giberellin repsonse modulation protein
          Length = 587

 Score =  159 bits (402), Expect = 3e-39
 Identities = 118/444 (26%), Positives = 204/444 (45%), Gaps = 25/444 (5%)

Query: 65  NNNNDEDLSSSSSKQHYYTYPYASTTTITTPNTTYNTINTPTTTDNYSFSPSHDYFNFEF 124
           +NN ++ L S SS     T    ST+T T       T  T TTT   +   S        
Sbjct: 158 SNNQNKRLKSCSSPDSMVT----STSTGTQIGGVIGTTVTTTTTTTTAAGESTRSVILVD 213

Query: 125 SGHSWSQNI--LLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRM 182
           S  +  + +  L+  A A   NN    + L+  +  L+       +K+++YF +AL  R+
Sbjct: 214 SQENGVRLVHALMACAEAIQQNNLTLAEALVKQIGCLAVSQAGAMRKVATYFAEALARRI 273

Query: 183 NDAGDRTYKTLTTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLH 242
                  Y+     ++       T +M   F E  P+  F H  AN AILEA EG  ++H
Sbjct: 274 -------YRLSPPQNQIDHCLSDTLQM--HFYETCPYLKFAHFTANQAILEAFEGKKRVH 324

Query: 243 IIDISNTYCTQWPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARL 302
           +ID S     QWP L++ALA R    P  RLT +       S    + E+G ++ + A  
Sbjct: 325 VIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPPAPDNSDH--LHEVGCKLAQLAEA 382

Query: 303 MGVPFKFK-IIFSDLRELNLCDLDIK--EDEALAINCVNSLHSISGAGNHRDLFISLLRG 359
           + V F+++  + + L +L+   L+++  + EA+A+N V  LH + G     +  + +++ 
Sbjct: 383 IHVEFEYRGFVANSLADLDASMLELRPSDTEAVAVNSVFELHKLLGRPGGIEKVLGVVKQ 442

Query: 360 LEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREAG 419
           ++P + T+VE+E++     G  F++ F E L ++   F++L+      S +++M E   G
Sbjct: 443 IKPVIFTVVEQESNHN---GPVFLDRFTESLHYYSTLFDSLEG--VPNSQDKVMSEVYLG 497

Query: 420 RGIVDLVACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMT 479
           + I +LVAC+  + VER ET ++W  R    G                LL  +  G    
Sbjct: 498 KQICNLVACEGPDRVERHETLSQWGNRFGSSGLAPAHLGSNAFKQASMLLSVFNSGQGYR 557

Query: 480 SSDGDTGIFLSWKDKPVVWASVWR 503
             + +  + L W  +P++  S W+
Sbjct: 558 VEESNGCLMLGWHTRPLITTSAWK 581


>At3g54220 SCARECROW1
          Length = 653

 Score =  157 bits (398), Expect = 1e-38
 Identities = 129/507 (25%), Positives = 233/507 (45%), Gaps = 45/507 (8%)

Query: 5   FRLVNFQQQQQQYQPDPSLNSTTTLTTSSSSRSSRQTTYHYYNQQEEDEECFNNFYYMDH 64
           +RL +          DPS  +   L   S++ S  Q    +  QQ++ +         + 
Sbjct: 183 YRLRSLMLLDPSSSSDPSPQTFEPLYQISNNPSPPQQQQQHQQQQQQHKPPPPPIQQQER 242

Query: 65  NNNNDEDLSSSSSKQHYYTYPYASTTTITTPNTTYNTINTPTTTDNYSFSPSHDYFNFEF 124
            N++ +              P   T T T P    NT                D      
Sbjct: 243 ENSSTD------------APPQPETVTATVPAVQTNTAEALRERKEEIKRQKQDEEGLHL 290

Query: 125 SGHSWSQNILLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMND 184
                   +LL+ A A S +N     +L+  +++LSTPYG + Q++++YF +A+ +R+ +
Sbjct: 291 L------TLLLQCAEAVSADNLEEANKLLLEISQLSTPYGTSAQRVAAYFSEAMSARLLN 344

Query: 185 AGDRTYKTLTTASEKTCSFDSTRKMLLKFQE---VSPWTTFGHVAANGAILEALEGNPKL 241
           +    Y  L +   +      + KM+  FQ    +SP   F H  AN AI EA E    +
Sbjct: 345 SCLGIYAALPS---RWMPQTHSLKMVSAFQVFNGISPLVKFSHFTANQAIQEAFEKEDSV 401

Query: 242 HIIDISNTYCTQWPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFAR 301
           HIID+      QWP L   LA+R    PH+RLT +      G+  + ++  G R+  FA 
Sbjct: 402 HIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGL------GTSMEALQATGKRLSDFAD 455

Query: 302 LMGVPFKFKIIFSDLRELNLCDLDIKEDEALAINCV-NSLHSISGAGNHRDLFISLLRGL 360
            +G+PF+F  +   +  L+   L++++ EA+A++ + +SL+ ++G+  H    + LL+ L
Sbjct: 456 KLGLPFEFCPLAEKVGNLDTERLNVRKREAVAVHWLQHSLYDVTGSDAHT---LWLLQRL 512

Query: 361 EPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLERE-AG 419
            P+V+T+VE+    ++     F+  F E + ++   F++L  S+   S ER ++E++   
Sbjct: 513 APKVVTVVEQ----DLSHAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLS 568

Query: 420 RGIVDLVAC-DPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRY-KEGWS 477
           + I +++A   P  S E +  +  WR ++   GF  +S +         LL  +  +G++
Sbjct: 569 KEIRNVLAVGGPSRSGEVKFES--WREKMQQCGFKGISLAGNAATQATLLLGMFPSDGYT 626

Query: 478 MTSSDGDTGIFLSWKDKPVVWASVWRP 504
           +   +G   + L WKD  ++ AS W P
Sbjct: 627 LVDDNGT--LKLGWKDLSLLTASAWTP 651


>At5g66770 SCARECROW gene regulator
          Length = 584

 Score =  153 bits (386), Expect = 2e-37
 Identities = 108/370 (29%), Positives = 180/370 (48%), Gaps = 21/370 (5%)

Query: 142 SDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGDRTYKTLTTASEKTC 201
           SD++ N   + +  + E  +  GD  ++++ YF +AL +R++     T          + 
Sbjct: 228 SDSDPNEASKTLLQIRESVSELGDPTERVAFYFTEALSNRLSPNSPAT----------SS 277

Query: 202 SFDSTRKMLLKFQEVS---PWTTFGHVAANGAILEALEGNPKLHIIDISNTYCTQWPTLL 258
           S  ST  ++L ++ ++   P++ F H+ AN AILEA E + K+HI+D       QWP LL
Sbjct: 278 SSSSTEDLILSYKTLNDACPYSKFAHLTANQAILEATEKSNKIHIVDFGIVQGIQWPALL 337

Query: 259 EALATRSDDTP-HLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIFSDLR 317
           +ALATR+   P  +R++ +     G S +  +   G+R+  FA+++ + F F  I + + 
Sbjct: 338 QALATRTSGKPTQIRVSGIPAPSLGESPEPSLIATGNRLRDFAKVLDLNFDFIPILTPIH 397

Query: 318 ELNLCDLDIKEDEALAINCVNSLHS-ISGAGNHRDLFISLLRGLEPRVLTIVEEEADLEV 376
            LN     +  DE LA+N +  L+  +       D  + L + L PRV+T+ E E  L  
Sbjct: 398 LLNGSSFRVDPDEVLAVNFMLQLYKLLDETPTIVDTALRLAKSLNPRVVTLGEYEVSLN- 456

Query: 377 CFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREA-GRGIVDLVACDPYE-SV 434
                F    K  L+++   FE+L+ +  R S ER+ +ERE  GR I  L+  +      
Sbjct: 457 --RVGFANRVKNALQFYSAVFESLEPNLGRDSEERVRVERELFGRRISGLIGPEKTGIHR 514

Query: 435 ERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDTG-IFLSWKD 493
           ER E   +WR  +   GF +V  S+      + LL  Y      +  +   G I L+W D
Sbjct: 515 ERMEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNYSNLYSIVESKPGFISLAWND 574

Query: 494 KPVVWASVWR 503
            P++  S WR
Sbjct: 575 LPLLTLSSWR 584


>At1g14920 signal response protein (GAI)
          Length = 533

 Score =  152 bits (385), Expect = 3e-37
 Identities = 103/373 (27%), Positives = 177/373 (46%), Gaps = 19/373 (5%)

Query: 134 LLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGDRTYKTL 193
           LL  A A    N    + L+  +  L+       +K+++YF +AL  R+       Y+  
Sbjct: 173 LLACAEAVQKENLTVAEALVKQIGFLAVSQIGAMRKVATYFAEALARRI-------YRLS 225

Query: 194 TTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTYCTQ 253
            + S    S   T +M   F E  P+  F H  AN AILEA +G  ++H+ID S +   Q
Sbjct: 226 PSQSPIDHSLSDTLQM--HFYETCPYLKFAHFTANQAILEAFQGKKRVHVIDFSMSQGLQ 283

Query: 254 WPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFK-II 312
           WP L++ALA R    P  RLT +            + E+G ++   A  + V F+++  +
Sbjct: 284 WPALMQALALRPGGPPVFRLTGIGPPAPDNF--DYLHEVGCKLAHLAEAIHVEFEYRGFV 341

Query: 313 FSDLRELNLCDLDIK--EDEALAINCVNSLHSISGAGNHRDLFISLLRGLEPRVLTIVEE 370
            + L +L+   L+++  E E++A+N V  LH + G     D  + ++  ++P + T+VE+
Sbjct: 342 ANTLADLDASMLELRPSEIESVAVNSVFELHKLLGRPGAIDKVLGVVNQIKPEIFTVVEQ 401

Query: 371 EADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREAGRGIVDLVACDP 430
           E++        F++ F E L ++   F++L+   S    +++M E   G+ I ++VACD 
Sbjct: 402 ESNHN---SPIFLDRFTESLHYYSTLFDSLEGVPS--GQDKVMSEVYLGKQICNVVACDG 456

Query: 431 YESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDTGIFLS 490
            + VER ET ++WR R    GF               LL  +  G      + D  + L 
Sbjct: 457 PDRVERHETLSQWRNRFGSAGFAAAHIGSNAFKQASMLLALFNGGEGYRVEESDGCLMLG 516

Query: 491 WKDKPVVWASVWR 503
           W  +P++  S W+
Sbjct: 517 WHTRPLIATSAWK 529


>At2g29060 putative SCARECROW gene regulator
          Length = 1336

 Score =  150 bits (380), Expect = 1e-36
 Identities = 101/384 (26%), Positives = 184/384 (47%), Gaps = 14/384 (3%)

Query: 131  QNILLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGD--- 187
            + +L   A+A S  +     + +  + + S+P GD  Q+L+  F  AL +R+  +     
Sbjct: 956  RTLLTHCAQAISTGDKTTALEFLLQIRQQSSPLGDAGQRLAHCFANALEARLQGSTGPMI 1015

Query: 188  RTYKTLTTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDIS 247
            +TY    T+S K  + D+ R   + +   SP+ T  +  +   IL+  +  P LHI+D  
Sbjct: 1016 QTYYNALTSSLKDTAADTIRAYRV-YLSSSPFVTLMYFFSIWMILDVAKDAPVLHIVDFG 1074

Query: 248  NTYCTQWPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPF 307
              Y  QWP  +++++ R D    LR+T +     G    + ++E G R+ ++ +   VPF
Sbjct: 1075 ILYGFQWPMFIQSISDRKDVPRKLRITGIELPQCGFRPAERIEETGRRLAEYCKRFNVPF 1134

Query: 308  KFKIIFSDLRE-LNLCDLDIKEDEALAINC---VNSLHSISGAGNH--RDLFISLLRGLE 361
            ++K I S   E + + DLDI+ +E LA+N    + +L   +G+  +  RD  + L+R + 
Sbjct: 1135 EYKAIASQNWETIRIEDLDIRPNEVLAVNAGLRLKNLQDETGSEENCPRDAVLKLIRNMN 1194

Query: 362  PRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLERE-AGR 420
            P V             F   F+  FKE +  +   F+  D +  R + ER+  ERE  GR
Sbjct: 1195 PDVFIHAIVNGSFNAPF---FISRFKEAVYHYSALFDMFDSTLPRDNKERIRFEREFYGR 1251

Query: 421  GIVDLVACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTS 480
              ++++AC+  + VER ET  +W+ R+   GF   +   E+ +  R  L++++       
Sbjct: 1252 EAMNVIACEEADRVERPETYRQWQVRMVRAGFKQKTIKPELVELFRGKLKKWRYHKDFVV 1311

Query: 481  SDGDTGIFLSWKDKPVVWASVWRP 504
             +    +   WK + +  +S W P
Sbjct: 1312 DENSKWLLQGWKGRTLYASSCWVP 1335



 Score =  146 bits (368), Expect = 3e-35
 Identities = 118/419 (28%), Positives = 198/419 (47%), Gaps = 33/419 (7%)

Query: 105 PTTTDNYSFSPSHDYFNFEFSGHSWSQN------ILLETARAFSDNNTNRIQQLMWMLNE 158
           P     +S SP  +    E SG+S+++       +L+  A+A S N+     +L+  + +
Sbjct: 289 PAKASTFSKSPKGE--KPEASGNSYTKETPDLRTMLVSCAQAVSINDRRTADELLSRIRQ 346

Query: 159 LSTPYGDTDQKLSSYFLQALFSRMNDAGDRTYKTLTTASEKTCSFDSTRKMLLKFQ---E 215
            S+ YGD  ++L+ YF  +L +R+   G + Y  L+  S+KT    ST  ML  +Q    
Sbjct: 347 HSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALS--SKKT----STSDMLKAYQTYIS 400

Query: 216 VSPWTTFGHVAANGAILE-ALEGNPK-LHIIDISNTYCTQWPTLLEALATRSDDTPHLRL 273
           V P+     + AN +I+  A   N K +HIID   +   QWP+L+  LA R   +  LR+
Sbjct: 401 VCPFKKIAIIFANHSIMRLASSANAKTIHIIDFGISDGFQWPSLIHRLAWRRGSSCKLRI 460

Query: 274 TTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIFSDLRELNLCDLDIKEDEALA 333
           T +     G    + + E G R+ K+ +   +PF++  I      + L DL +KE E +A
Sbjct: 461 TGIELPQRGFRPAEGVIETGRRLAKYCQKFNIPFEYNAIAQKWESIKLEDLKLKEGEFVA 520

Query: 334 INCV----NSLHSISGAGNHRDLFISLLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKEC 389
           +N +    N L       + RD  + L+R ++P V             F   FV  F+E 
Sbjct: 521 VNSLFRFRNLLDETVAVHSPRDTVLKLIRKIKPDVFIPGILSGSYNAPF---FVTRFREV 577

Query: 390 LRWFRVYFEALDESFSRTSSERLMLERE-AGRGIVDLVACDPYESVERRETAARWRRRLH 448
           L  +   F+  D + +R    R+M E+E  GR I+++VAC+  E VER E+  +W+ R  
Sbjct: 578 LFHYSSLFDMCDTNLTREDPMRVMFEKEFYGREIMNVVACEGTERVERPESYKQWQARAM 637

Query: 449 GGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDTG---IFLSWKDKPVVWASVWRP 504
             GF  +    E+   ++ ++   + G+     D D     +   WK + V  +S+W P
Sbjct: 638 RAGFRQIPLEKELVQKLKLMV---ESGYKPKEFDVDQDCHWLLQGWKGRIVYGSSIWVP 693


>At1g55580 unknown protein
          Length = 445

 Score =  148 bits (373), Expect = 8e-36
 Identities = 119/415 (28%), Positives = 198/415 (47%), Gaps = 53/415 (12%)

Query: 131 QNILLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMN-DAGDRT 189
           + +L   A   S +N    Q L+ +L+  S+P+GD+ ++L   F +AL  R+N    D+T
Sbjct: 42  RRLLFTAANFVSQSNFTAAQNLLSILSLNSSPHGDSTERLVHLFTKALSVRINRQQQDQT 101

Query: 190 YKTLT-------TASEKTCSFDSTRKMLLKFQ-----------------EVSPWTTFGHV 225
            +T+        T S  T    S  K    F+                 +++P+  FGH+
Sbjct: 102 AETVATWTTNEMTMSNSTVFTSSVCKEQFLFRTKNNNSDFESCYYLWLNQLTPFIRFGHL 161

Query: 226 AANGAILEALEGNPK--LHIIDISNTYCTQWPTLLEALATRSDD----TPHLRLTTVVTA 279
            AN AIL+A E N    LHI+D+  +   QWP L++ALA RS +     P LR+T     
Sbjct: 162 TANQAILDATETNDNGALHILDLDISQGLQWPPLMQALAERSSNPSSPPPSLRITGCGRD 221

Query: 280 ISGGSVQKVMKEIGSRMEKFARLMGVPFKFK---IIFSDLR----ELNLCDLDIKEDEAL 332
           ++G      +   G R+ +FA  +G+ F+F    I+  DL     ++ L  L   + E +
Sbjct: 222 VTG------LNRTGDRLTRFADSLGLQFQFHTLVIVEEDLAGLLLQIRLLALSAVQGETI 275

Query: 333 AINCVNSLHSI-SGAGNHRDLFISLLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKECLR 391
           A+NCV+ LH I +  G+    F+S ++ L  R++T+ E EA+        F+  F E + 
Sbjct: 276 AVNCVHFLHKIFNDDGDMIGHFLSAIKSLNSRIVTMAEREANHG---DHSFLNRFSEAVD 332

Query: 392 WFRVYFEALDESFSRTSSERLMLE-REAGRGIVDLVACDPYESVERRETAARWRRRLHGG 450
            +   F++L+ +    S ERL LE R  G+ I+D+VA +  E  +R      W   +   
Sbjct: 333 HYMAIFDSLEATLPPNSRERLTLEQRWFGKEILDVVAAEETERKQRHRRFEIWEEMMKRF 392

Query: 451 GFNTVSFSDEVCDDVRALLRRY--KEGWSMTSSDGDTGIFLSWKDKPVVWASVWR 503
           GF  V          + LLR +   EG+++     +  +FL W+++P+   S W+
Sbjct: 393 GFVNVPIGSFALSQAKLLLRLHYPSEGYNLQFL--NNSLFLGWQNRPLFSVSSWK 445


>At1g07530 transcription factor scarecrow-like 14, putative
          Length = 769

 Score =  142 bits (357), Expect = 6e-34
 Identities = 102/382 (26%), Positives = 182/382 (46%), Gaps = 17/382 (4%)

Query: 131 QNILLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGDRTY 190
           + +L+  A+A S ++     +++  + E S+P G+  ++L+ YF  +L +R+   G + Y
Sbjct: 394 RTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIY 453

Query: 191 KTLTTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTY 250
             L+  S+KT + D   K    +  V P+     + AN +++        +HIID   +Y
Sbjct: 454 TALS--SKKTSAADML-KAYQTYMSVCPFKKAAIIFANHSMMRFTANANTIHIIDFGISY 510

Query: 251 CTQWPTLLEALA-TRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKF 309
             QWP L+  L+ +R   +P LR+T +     G    + ++E G R+ ++ +   VPF++
Sbjct: 511 GFQWPALIHRLSLSRPGGSPKLRITGIELPQRGFRPAEGVQETGHRLARYCQRHNVPFEY 570

Query: 310 KIIFSDLRELNLCDLDIKEDEALAINCV----NSLHSISGAGNHRDLFISLLRGLEPRVL 365
             I      + + DL +++ E + +N +    N L       + RD  + L+R + P V 
Sbjct: 571 NAIAQKWETIQVEDLKLRQGEYVVVNSLFRFRNLLDETVLVNSPRDAVLKLIRKINPNVF 630

Query: 366 TIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREA-GRGIVD 424
                  +    F   FV  F+E L  +   F+  D   +R    RLM E+E  GR IV+
Sbjct: 631 IPAILSGNYNAPF---FVTRFREALFHYSAVFDMCDSKLAREDEMRLMYEKEFYGREIVN 687

Query: 425 LVACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGD 484
           +VAC+  E VER ET  +W+ RL   GF  +    E+  +++    + + G+        
Sbjct: 688 VVACEGTERVERPETYKQWQARLIRAGFRQLPLEKELMQNLKL---KIENGYDKNFDVDQ 744

Query: 485 TGIFL--SWKDKPVVWASVWRP 504
            G +L   WK + V  +S+W P
Sbjct: 745 NGNWLLQGWKGRIVYASSLWVP 766


>At2g37650 scarecrow-like 9 (SCL9)
          Length = 718

 Score =  141 bits (356), Expect = 7e-34
 Identities = 100/379 (26%), Positives = 174/379 (45%), Gaps = 14/379 (3%)

Query: 131 QNILLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQKLSSYFLQALFSRMNDAGDRTY 190
           +++L+  A+A + ++     QL+  +   STP+GD +Q+L+  F   L +R+   G + Y
Sbjct: 345 RSLLIHCAQAVAADDRRCAGQLLKQIRLHSTPFGDGNQRLAHCFANGLEARLAGTGSQIY 404

Query: 191 KTLTTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTY 250
           K + +      +     ++ L      P+    +   N  I + +  + ++H+ID    Y
Sbjct: 405 KGIVSKPRSAAAVLKAHQLFLA---CCPFRKLSYFITNKTIRDLVGNSQRVHVIDFGILY 461

Query: 251 CTQWPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFK 310
             QWPTL+   +     +P +R+T +     G    + ++E G R+  +A+L GVPF++K
Sbjct: 462 GFQWPTLIHRFSMYG--SPKVRITGIEFPQPGFRPAQRVEETGQRLAAYAKLFGVPFEYK 519

Query: 311 IIFSDLRELNLCDLDIKEDEALAINCV---NSLHSIS-GAGNHRDLFISLLRGLEPRVLT 366
            I      + L DLDI  DE   +NC+    +LH  S    + RD  ++L+  + P +  
Sbjct: 520 AIAKKWDAIQLEDLDIDRDEITVVNCLYRAENLHDESVKVESCRDTVLNLIGKINPDLFV 579

Query: 367 IVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREA-GRGIVDL 425
                      F   FV  F+E L  F   F+ L+    R   ER+ LE E  GR  +++
Sbjct: 580 FGIVNGAYNAPF---FVTRFREALFHFSSIFDMLETIVPREDEERMFLEMEVFGREALNV 636

Query: 426 VACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDT 485
           +AC+ +E VER ET  +W  R    G   V F   +       +  +     +   D + 
Sbjct: 637 IACEGWERVERPETYKQWHVRAMRSGLVQVPFDPSIMKTSLHKVHTFYHKDFVIDQD-NR 695

Query: 486 GIFLSWKDKPVVWASVWRP 504
            +   WK + V+  SVW+P
Sbjct: 696 WLLQGWKGRTVMALSVWKP 714


>At1g63100 transcription factor SCARECROW, putative
          Length = 658

 Score =  141 bits (356), Expect = 7e-34
 Identities = 108/389 (27%), Positives = 178/389 (44%), Gaps = 29/389 (7%)

Query: 132 NILLETARAFSDNNTNRIQQLMWMLNELSTPYGDTDQ-KLSSYFLQALFSRMNDAGDRTY 190
           N+L     A    N   I   +    +L++P G T   +L +Y+++AL  R+       +
Sbjct: 276 NLLTGCLDAIRSRNIAAINHFIARTGDLASPRGRTPMTRLIAYYIEALALRVARMWPHIF 335

Query: 191 KTLTTASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEGNPKLHIIDISNTY 250
                        D +   L    +V+P   F H  AN  +L A EG  ++HIID     
Sbjct: 336 HIAPPREFDRTVEDESGNALRFLNQVTPIPKFIHFTANEMLLRAFEGKERVHIIDFDIKQ 395

Query: 251 CTQWPTLLEALATRSDDTPHLRLTTVVTAISGGSVQKVMKEIGSRMEKFARLMGVPFKFK 310
             QWP+  ++LA+R +   H+R+T +      G  +  + E G R+  FA  M + F+F 
Sbjct: 396 GLQWPSFFQSLASRINPPHHVRITGI------GESKLELNETGDRLHGFAEAMNLQFEFH 449

Query: 311 IIFSDLRELNLCDLDIKEDEALAINCVNSLHS--ISGAGNHRDLFISLLRGLEPRVLTIV 368
            +   L ++ L  L +KE E++A+NCV  +H     G G     F+ L+R   P  L + 
Sbjct: 450 PVVDRLEDVRLWMLHVKEGESVAVNCVMQMHKTLYDGTGAAIRDFLGLIRSTNPIALVLA 509

Query: 369 EEEADLEVCFGSDFVEGFKEC--LRWFRVYFEALDESFSRTSSERLMLEREA-GRGIVDL 425
           E+EA+      S+ +E  + C  L+++   F+A+  + +  S  R+ +E    GR I ++
Sbjct: 510 EQEAE----HNSEQLE-TRVCNSLKYYSAMFDAIHTNLATDSLMRVKVEEMLFGREIRNI 564

Query: 426 VACDPYESVERRETAARWRRRLHGGGFNTVSFSDEVCDDVRALLRRY---KEG-WSMTSS 481
           VAC+     ER      WRR L   GF ++  S+      + LLR Y    EG +++  S
Sbjct: 565 VACEGSHRQERHVGFRHWRRMLEQLGFRSLGVSEREVLQSKMLLRMYGSDNEGFFNVERS 624

Query: 482 DGDT--------GIFLSWKDKPVVWASVW 502
           D D         G+ L W ++P+   S W
Sbjct: 625 DEDNGGEGGRGGGVTLRWSEQPLYTISAW 653


>At5g52510 scarecrow-like 8 (SCL8)
          Length = 525

 Score =  136 bits (343), Expect = 2e-32
 Identities = 116/482 (24%), Positives = 213/482 (44%), Gaps = 50/482 (10%)

Query: 47  NQQEEDEECFNNFYYMDHNNNNDEDLSSSSSKQHYYTYPYAS-TTTITTPNTTYNTINTP 105
           N+  E E   N+   ++    +D+D S         T   +     + TPN   N +   
Sbjct: 69  NRVHESENMLNSLRELEKQLLDDDDESGGDDDVSVITNSNSDWIQNLVTPNPNPNPV--- 125

Query: 106 TTTDNYSFSPSHDYFNFEFSGHSWSQNI-----LLETARAFSDNNTNRIQQLMWMLNELS 160
                 SFSPS    +   S  S + ++     ++E A A ++  T    +++  +++  
Sbjct: 126 -----LSFSPSSSSSSSSPSTASTTTSVCSRQTVMEIATAIAEGKTEIATEILARVSQTP 180

Query: 161 TPYGDTDQKLSSYFLQALFSRMNDAGDRTYKTLTTASEKTCSFDSTRKMLLKFQEVSPWT 220
               ++++KL  + + AL SR+       Y      S +               E+SP  
Sbjct: 181 NLERNSEEKLVDFMVAALRSRIASPVTELYGKEHLISTQL------------LYELSPCF 228

Query: 221 TFGHVAANGAILEALEGNPK----LHIIDISNTYCTQWPTLLEALATR------SDDTPH 270
             G  AAN AIL+A + N       H+ID       Q+  LL  L+TR      S ++P 
Sbjct: 229 KLGFEAANLAILDAADNNDGGMMIPHVIDFDIGEGGQYVNLLRTLSTRRNGKSQSQNSPV 288

Query: 271 LRLTTVVTAISGGSV----QKVMKEIGSRMEKFARLMGVPFKFKIIFS-DLRELNLCDLD 325
           +++T V   + G  V    ++ +K +G  + +    +G+   F ++ S  L +LN   L 
Sbjct: 289 VKITAVANNVYGCLVDDGGEERLKAVGDLLSQLGDRLGISVSFNVVTSLRLGDLNRESLG 348

Query: 326 IKEDEALAINCVNSLHSISGAG----NHRDLFISLLRGLEPRVLTIVEEEADLEVCFGSD 381
              DE LA+N    L+ +        N RD  +  ++GL+PRV+T+VE+E +      + 
Sbjct: 349 CDPDETLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLKPRVVTLVEQEMNSNT---AP 405

Query: 382 FVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREAGRGIVDLVACDPYESVERRETAA 441
           F+    E    +    E+++ +   T+S+R  +E   GR +V+ VAC+  + +ER E   
Sbjct: 406 FLGRVSESCACYGALLESVESTVPSTNSDRAKVEEGIGRKLVNAVACEGIDRIERCEVFG 465

Query: 442 RWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTSSDGDTGIFLSWKDKPVVWASV 501
           +WR R+   GF  +  S+++ + +++   R   G+++   +G  G+   W  + +  AS 
Sbjct: 466 KWRMRMSMAGFELMPLSEKIAESMKSRGNRVHPGFTVKEDNG--GVCFGWMGRALTVASA 523

Query: 502 WR 503
           WR
Sbjct: 524 WR 525


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.317    0.131    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,959,553
Number of Sequences: 26719
Number of extensions: 522701
Number of successful extensions: 2253
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 2062
Number of HSP's gapped (non-prelim): 94
length of query: 504
length of database: 11,318,596
effective HSP length: 104
effective length of query: 400
effective length of database: 8,539,820
effective search space: 3415928000
effective search space used: 3415928000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)