BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146972.3 + phase: 0
(240 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g21310 putative retroelement pol polyprotein 150 8e-37
At2g07550 putative retroelement pol polyprotein 148 3e-36
At5g35820 copia-like retrotransposable element 144 3e-35
At3g45520 copia-like polyprotein 139 1e-33
At2g19840 copia-like retroelement pol polyprotein 139 1e-33
At4g10460 putative retrotransposon 138 2e-33
At2g21460 putative retroelement pol polyprotein 131 3e-31
At2g13930 putative retroelement pol polyprotein 120 5e-28
At1g37110 115 2e-26
At4g21360 putative transposable element 112 2e-25
At1g47360 polyprotein, putative 100 5e-22
At4g04380 putative polyprotein 96 2e-20
At3g55300 putative protein 87 1e-17
At2g15700 copia-like retroelement pol polyprotein 83 1e-16
At4g04280 putative transposon protein 75 4e-14
At1g32590 hypothetical protein, 5' partial 71 6e-13
At1g42380 hypothetical protein 64 9e-11
At3g60170 putative protein 61 6e-10
At4g12200 putative protein 54 7e-08
At4g04600 putative polyprotein 52 2e-07
>At2g21310 putative retroelement pol polyprotein
Length = 838
Score = 150 bits (378), Expect = 8e-37
Identities = 86/190 (45%), Positives = 120/190 (62%), Gaps = 13/190 (6%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
KARS ++L LG+ VLR+V KE TAA M L+ L+M KSL +R +LKQ+LY ++M +S
Sbjct: 70 KARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSDSMT 129
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTLEEIQ 131
I E + +F K++ DLEN++V + DED+AI+LL +LPK F+ K+T+ YGK T+ L+EI
Sbjct: 130 IEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKT-TLALDEIT 188
Query: 132 AALRT---------KELTNSKDLTHEHDEGLSVSRGNGGGRGNRRKSGNKSRFE--CFNC 180
A+R+ K L NS D D G S R R N+ +S +KSR + C+ C
Sbjct: 189 GAIRSKVLELGASGKMLKNSSDALFVQDRGRSEKRDKSSER-NKSQSRSKSREKKVCWVC 247
Query: 181 HKMGHFKKDC 190
K GHFKK C
Sbjct: 248 GKEGHFKKQC 257
>At2g07550 putative retroelement pol polyprotein
Length = 1356
Score = 148 bits (373), Expect = 3e-36
Identities = 84/197 (42%), Positives = 125/197 (62%), Gaps = 10/197 (5%)
Query: 8 EMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMV 67
E KARSAIVL + D+VLR++ KE+TAA+M L+ LYM+K+L +R + KQ+LYSF+M
Sbjct: 69 EKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLYSFKMS 128
Query: 68 ESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGK-EGTVT 126
E+ ++ + EF +I+ DLEN+ V + DED+AILLL ALPK+F+ K+T+ Y + +T
Sbjct: 129 ENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSGKSILT 188
Query: 127 LEEIQAALRTKELT--NSKDLTHEHDEGLSV-------SRGNGGGRGNRRKSGNKSRFEC 177
L+E+ AA+ +KEL + K EGL V +G G+G +K +K + C
Sbjct: 189 LDEVAAAIYSKELELGSVKKSIKVQAEGLYVKDKNENKGKGEQKGKGKGKKGKSKKKPGC 248
Query: 178 FNCHKMGHFKKDCPEIN 194
+ C + GHF+ CP N
Sbjct: 249 WTCGEEGHFRSSCPNQN 265
>At5g35820 copia-like retrotransposable element
Length = 1342
Score = 144 bits (364), Expect = 3e-35
Identities = 80/188 (42%), Positives = 115/188 (60%), Gaps = 10/188 (5%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
KARS I+L LG+ VLR+V K+ TAA M L+ L+M KSL +R +LKQ+LY ++M E+
Sbjct: 78 KARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYLKQRLYGYKMSENMT 137
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTLEEIQ 131
+ E + +F K++ DLEN++V + DED+AI+LL +LP+ F+ K T+ Y K T+ LEEI
Sbjct: 138 MEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYCKT-TLHLEEIT 196
Query: 132 AALRT---------KELTNSKDLTHEHDEGLSVSRGNGGGRGNRRKSGNKSRFECFNCHK 182
+A+R+ K L N+ D D G S +RG G + R + C+ C K
Sbjct: 197 SAIRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKGPNKNKSRSKSKGAGKTCWICGK 256
Query: 183 MGHFKKDC 190
GHFKK C
Sbjct: 257 EGHFKKQC 264
>At3g45520 copia-like polyprotein
Length = 1363
Score = 139 bits (351), Expect = 1e-33
Identities = 85/203 (41%), Positives = 124/203 (60%), Gaps = 12/203 (5%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
KARS IVL + D+VLR++ KE +AA+M L+ LYM+K+L +R +LKQ+LYSF+M E+ +
Sbjct: 73 KARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKLYSFKMSENLS 132
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTV-TLEEI 130
I + EF I+ DLEN+ V + DED+AILLL +LPK F+ K+T+ Y TV +L+E+
Sbjct: 133 IEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSSGKTVLSLDEV 192
Query: 131 QAALRTKELT--NSKDLTHEHDEGLSV-------SRGNGGGRGNRRKSGNKSRFECFNCH 181
AA+ ++EL + K EGL V R +G ++S +KS+ C+ C
Sbjct: 193 AAAIYSRELEFGSVKKSIKGQAEGLYVKDKAENRGRSEQKDKGKGKRSKSKSKRGCWICG 252
Query: 182 KMGHFKKDCPEINGNSAQIVYEG 204
+ GH K CP N N Q +G
Sbjct: 253 EDGHLKSTCP--NKNKPQFKNQG 273
>At2g19840 copia-like retroelement pol polyprotein
Length = 1137
Score = 139 bits (351), Expect = 1e-33
Identities = 73/182 (40%), Positives = 115/182 (63%), Gaps = 4/182 (2%)
Query: 11 DKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESK 70
+KA I + +GDKVLR + TAA WA L+ LY+ KSL +R +L+ ++Y++RM +SK
Sbjct: 42 EKAMDMIFINVGDKVLRNIENSKTAAEAWATLDKLYLVKSLPNRVYLQLKVYNYRMQDSK 101
Query: 71 AIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTVTLEEI 130
+ E + EF K++ DL N+++Q+ DE +AIL+L ALP S++ K T+ YG+EG + L+++
Sbjct: 102 TLEENVDEFQKMISDLNNLQIQVPDEVQAILILSALPDSYDMLKETLKYGREG-IKLDDV 160
Query: 131 QAALRTK--ELTNSKDLTHEHDEGLSVSRGNGGGRGNRRKSGNKSRFECFNCHKMGHFKK 188
+A ++K EL +S + EGL V RG RG+ + + C+ C K GHFK+
Sbjct: 161 ISAAKSKELELRDSSGGSRPVGEGLYV-RGKSQARGSDGPKSTEGKKVCWICGKEGHFKR 219
Query: 189 DC 190
C
Sbjct: 220 QC 221
>At4g10460 putative retrotransposon
Length = 1230
Score = 138 bits (348), Expect = 2e-33
Identities = 82/201 (40%), Positives = 122/201 (59%), Gaps = 12/201 (5%)
Query: 3 QAEKTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLY 62
+A E KARS IVL + D+VLR+ KE TA SM L+ LYM+K+L +R +LKQ+LY
Sbjct: 62 EALMEEKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLY 121
Query: 63 SFRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGK- 121
S++M E+ ++ + EF +++ DLEN V + DED+AILLL +LPK F+ K+T+ YG
Sbjct: 122 SYKMQENLSVEGNIDEFLRLIADLENTNVLVSDEDQAILLLMSLPKQFDQLKDTLKYGSG 181
Query: 122 EGTVTLEEIQAALRTKELT--NSKDLTHEHDEGLSV-SRGNGGGRGNRRKSGNKSRFE-- 176
T++++E+ AA+ +KEL ++K EGL V + G +++ GNK R
Sbjct: 182 RTTLSVDEVVAAIYSKELELGSNKKSIRGQAEGLYVKDKPETRGMSEQKEKGNKGRSRSR 241
Query: 177 ------CFNCHKMGHFKKDCP 191
C+ C + GHFK CP
Sbjct: 242 SKGWKGCWICGEEGHFKTSCP 262
>At2g21460 putative retroelement pol polyprotein
Length = 1333
Score = 131 bits (330), Expect = 3e-31
Identities = 85/198 (42%), Positives = 127/198 (63%), Gaps = 15/198 (7%)
Query: 12 KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKA 71
KARSAIVL + D+VLR++ KE +AA+M L+ LYM+K+L +R + KQ+LYSF+M E+ +
Sbjct: 73 KARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFKMSENLS 132
Query: 72 IMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYG-KEGTVTLEEI 130
I + EF +I+ DLEN V + DED+AILLL +LPK F+ ++T+ YG T++L+E+
Sbjct: 133 IEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLGRVTLSLDEV 192
Query: 131 QAALRTKEL---TNSKDLTHEHDEGLSV-----SRGNGGGRG---NRRKSGNKSRFE--C 177
AA+ +KEL +N K + + EGL V +RG RG N +KS +KSR + C
Sbjct: 193 VAAIYSKELELGSNKKSIKGQ-AEGLFVKEKTETRGRTEQRGNNNNNKKSRSKSRSKKGC 251
Query: 178 FNCHKMGHFKKDCPEING 195
+ C + + + E NG
Sbjct: 252 WICGESSNGSSNYSEANG 269
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 120 bits (302), Expect = 5e-28
Identities = 70/197 (35%), Positives = 111/197 (55%), Gaps = 10/197 (5%)
Query: 3 QAEKTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLY 62
+ + E DKA++ I L + DKVLR++ TAA W L+ L+M +SL HR + + Y
Sbjct: 39 EVARLERCDKAKNVIFLNVADKVLRKIELCKTAAEAWETLDRLFMIRSLPHRVYTQLSFY 98
Query: 63 SFRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLY-GK 121
+F+M E+K I E + +F KI+ DL ++++ + DE +AILLL +LP ++ TM Y
Sbjct: 99 TFKMQENKKIDENIDDFLKIVADLNHLQIDVTDEVQAILLLSSLPARYDGLVETMKYSNS 158
Query: 122 EGTVTLEEIQAALRTKE---LTNSKDLTHEH-----DEGLSVSRGNGGGRGNRRKSGNKS 173
+ L+++ A R KE N++ + H +G + ++GN G +R KS +
Sbjct: 159 REKLRLDDVMVAARDKERELSQNNRPVVEGHFARGRPDGKNNNQGNKGKNRSRSKSADGK 218
Query: 174 RFECFNCHKMGHFKKDC 190
R C+ C K GHFKK C
Sbjct: 219 RV-CWICGKEGHFKKQC 234
>At1g37110
Length = 1356
Score = 115 bits (289), Expect = 2e-26
Identities = 67/196 (34%), Positives = 115/196 (58%), Gaps = 12/196 (6%)
Query: 6 KTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFR 65
K E ++A++ I+ + D VL +V AT A +WA L YM SL +R + + +LYSF+
Sbjct: 75 KIEQSEQAKNIIINHISDVVLLKVNHYATTADLWATLNKKYMETSLPNRIYTQLKLYSFK 134
Query: 66 MVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTV 125
MV + I + + EF +I+ +L ++E+Q+++E +AIL+L +LP S K+T+ YG + T+
Sbjct: 135 MVSTMTIDQNVDEFLRIVAELGSLEIQVDEEVQAILILNSLPASHIQLKHTLKYGNK-TL 193
Query: 126 TLEEIQAALRT--KELTNSKDL---------THEHDEGLSVSRGNGGGRGNRRKSGNKSR 174
T++++ ++ ++ +EL + DL T E L + GG R +S +K++
Sbjct: 194 TVQDVTSSAKSLERELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGGQGKGRSRSNSKTK 253
Query: 175 FECFNCHKMGHFKKDC 190
C+ C K GH KKDC
Sbjct: 254 VPCWYCKKEGHVKKDC 269
>At4g21360 putative transposable element
Length = 1308
Score = 112 bits (280), Expect = 2e-25
Identities = 64/195 (32%), Positives = 117/195 (59%), Gaps = 11/195 (5%)
Query: 6 KTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFR 65
K E D+A++ I+ + D VL +V TAA +WA L L+M SL +R + + +LYSF+
Sbjct: 77 KFEQSDQAKNFIINHITDTVLLKVQHCVTAAELWATLNKLFMETSLPNRIYTQLRLYSFK 136
Query: 66 MVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTV 125
MV++ +I + EF +I+ +L ++++Q+ +E +AIL+L +LP S+ K+T+ YG + T+
Sbjct: 137 MVDNLSIDQNTDEFLRIVAELGSLQIQVGEEVQAILILNSLPPSYIQLKHTLKYGNK-TL 195
Query: 126 TLEEIQAALRT--KELTNSKD--------LTHEHDEGLSVSRGNGGGRGNRRKSGNKSRF 175
+++++ ++ ++ +EL+ K+ + + G ++ G R +S +KSR
Sbjct: 196 SVQDVVSSAKSLERELSEQKETIRAPASTALYTAERGRPQTKNTQGQGKGRGRSNSKSRL 255
Query: 176 ECFNCHKMGHFKKDC 190
C+ C K GH KKDC
Sbjct: 256 TCWFCKKEGHVKKDC 270
>At1g47360 polyprotein, putative
Length = 1182
Score = 100 bits (250), Expect = 5e-22
Identities = 58/166 (34%), Positives = 92/166 (54%), Gaps = 10/166 (6%)
Query: 34 TAASMWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKAIMEQLTEFNKILDDLENIEVQL 93
TA W L+ L+M +SL HR + + Y+F+M E+K I E + +F KI+ DL ++++++
Sbjct: 60 TAQEAWETLDRLFMIRSLPHRVYTQLSFYTFKMQENKKIDENIDDFLKIVADLNHLQIEV 119
Query: 94 EDEDKAILLLCALPKSFESFKNTMLY-GKEGTVTLEEIQAALRTKE---LTNSKDLTHEH 149
DE +AILLL +LP ++ TM Y + L+++ R KE N++ + H
Sbjct: 120 TDEVQAILLLSSLPARYDGLVETMKYSNSREKLRLDDVMVGARDKERELSQNNRPVAEGH 179
Query: 150 -----DEGLSVSRGNGGGRGNRRKSGNKSRFECFNCHKMGHFKKDC 190
EG + ++GN G +R KS + R C+ C K GHFKK C
Sbjct: 180 YARGRPEGKNNNQGNKGKNRSRSKSADGKRV-CWICGKEGHFKKQC 224
>At4g04380 putative polyprotein
Length = 778
Score = 95.9 bits (237), Expect = 2e-20
Identities = 60/142 (42%), Positives = 89/142 (62%), Gaps = 18/142 (12%)
Query: 3 QAEKTEMVD----KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLK 58
+ EK E + K RS IVL + D+VL EA+ + LYM+K+L ++ +LK
Sbjct: 42 ECEKVEAFEEKKRKTRSTIVLSVSDRVL-----EAS--------DRLYMSKALPNQIYLK 88
Query: 59 QQLYSFRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTML 118
Q+LY F+M E+ ++ + EF I+ DLEN+ V + DED+ ILLL +LPKSF+ K+T+
Sbjct: 89 QKLYRFKMSENLSMEGNIDEFLHIVADLENLNVLVSDEDQTILLLMSLPKSFDQLKDTLQ 148
Query: 119 YGKEGTV-TLEEIQAALRTKEL 139
Y TV TL+E+ AA+ +KEL
Sbjct: 149 YSSGKTVLTLDEVTAAIYSKEL 170
>At3g55300 putative protein
Length = 262
Score = 86.7 bits (213), Expect = 1e-17
Identities = 53/168 (31%), Positives = 91/168 (53%), Gaps = 18/168 (10%)
Query: 43 ESLYMTKSLAHRQFLKQQLYSFRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILL 102
E Y TK+LA+ +LK + SF+MVE+K+I E L K++ DL ++++ DED+A+
Sbjct: 37 EGNYQTKTLANMIYLKHKFTSFKMVENKSIEENLDTSLKLVADLASLDINTSDEDQALQF 96
Query: 103 LCALPKSFESFKNTMLYGK-EGTVTLEEIQAALRTKEL-TNSKDLTH----EHDEGLSVS 156
+ LP ++S +T+ YG + T+TL + ++ +KE+ K L + + + L
Sbjct: 97 MAGLPPQYDSLVDTLKYGSGKDTLTLNAVISSAYSKEIELKEKGLLNVSKPDSEALLGDF 156
Query: 157 RGNGGGRGNRR-----KSGN-------KSRFECFNCHKMGHFKKDCPE 192
+G +GN+R SGN + CF C K H+K++CP+
Sbjct: 157 KGRSNNKGNKRPCTGSSSGNGKFQSRPSNNTSCFICGKEDHWKRECPQ 204
>At2g15700 copia-like retroelement pol polyprotein
Length = 1166
Score = 82.8 bits (203), Expect = 1e-16
Identities = 48/142 (33%), Positives = 86/142 (59%), Gaps = 2/142 (1%)
Query: 6 KTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFR 65
K E +KA+ IVL +G++VLR++ TAA+MW+ L+ LYM SL +R +L+ + Y+++
Sbjct: 76 KFEKSEKAKDLIVLNVGNQVLRKIKNCETAAAMWSTLKRLYMETSLPNRIYLQLKFYTYK 135
Query: 66 MVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTV 125
M +S++I + +F K++ DL NI V + +E +AILLL +L E+ + EG
Sbjct: 136 MTDSRSIDGNVDDFLKLVTDLNNIGVDVTEEVQAILLLSSLYDRKENSQKVESSQSEGLY 195
Query: 126 TLEEI--QAALRTKELTNSKDL 145
+E + L+ ++ + +D+
Sbjct: 196 VEQEADQRRGLKKEKANHGEDV 217
>At4g04280 putative transposon protein
Length = 1104
Score = 74.7 bits (182), Expect = 4e-14
Identities = 55/187 (29%), Positives = 92/187 (48%), Gaps = 16/187 (8%)
Query: 6 KTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFR 65
K E ++A++ I+ + D VL +V TAA +WA L L+M SL +R + + +LYSF+
Sbjct: 73 KFEQSEQAKNFIINHITDTVLLKVQHCKTAAEIWATLNKLFMETSLLNRIYTQLKLYSFK 132
Query: 66 MVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLYGKEGTV 125
MV++ +I + + EF +IL D + + LP S+ K+T+ +
Sbjct: 133 MVDTLSIDQNVDEFLRILADCLDQNL--------------LPSSYIQLKHTLNTDVVSSA 178
Query: 126 TLEEIQAALRTKELTNSKDLTHEHDEGL-SVSRGNGGGRG-NRRKSGNKSRFECFNCHKM 183
E + + + N + D G V + G+G NR +S +K+R C+ C K
Sbjct: 179 KSLERKLSETQESNKNVSMALYTTDRGRPQVRNQDKQGQGKNRGRSNSKTRVTCWFCKKE 238
Query: 184 GHFKKDC 190
H K+DC
Sbjct: 239 AHVKRDC 245
>At1g32590 hypothetical protein, 5' partial
Length = 1263
Score = 70.9 bits (172), Expect = 6e-13
Identities = 61/252 (24%), Positives = 108/252 (42%), Gaps = 26/252 (10%)
Query: 4 AEKTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYS 63
AEKT K ++ + + +L+ + ++ T+ +W ++ Y L++ S
Sbjct: 19 AEKTVKDHKVKNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRS 78
Query: 64 FRMVESKAIMEQLTEF----NKILDDLENIEVQLEDE-----------DKAILLLCALPK 108
F ++E K I E +T + +I +D+ N+ + D +K ++CA+ +
Sbjct: 79 FEVLEMK-IGETITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEE 137
Query: 109 SFESFKNTMLYGKEGTVTLEEIQAALRTKELTNSKDLTHEHDEG-------LSVSRGNGG 161
S + K + G + ++ + E + E K T +G S RG GG
Sbjct: 138 S-NNIKELTVDGLQSSLMVHEQNLSRHDVEERVLKAETQWRPDGGRGRGGSPSRGRGRGG 196
Query: 162 GRGNRRKSGNKSRFECFNCHKMGHFKKDCPEINGNSAQIVYEGYEDVGALMVWCCLEDEE 221
+G R N+ ECF CHKMGH+K +CP + + E ED+ + + DEE
Sbjct: 197 YQGRGRGYVNRDTVECFKCHKMGHYKAECPSWEKEANYVEME--EDLLLMAHVEQIGDEE 254
Query: 222 GDVSHLGSDACN 233
+ L S N
Sbjct: 255 KQIWFLDSGCSN 266
>At1g42380 hypothetical protein
Length = 143
Score = 63.5 bits (153), Expect = 9e-11
Identities = 42/134 (31%), Positives = 67/134 (49%), Gaps = 10/134 (7%)
Query: 66 MVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTMLY-GKEGT 124
M E+K I E + +F KI+ DL +I++++ DE +AILLL +LP ++ TM Y
Sbjct: 1 MQENKKIDENIDDFLKIVVDLNHIQIEVRDEVQAILLLSSLPSRYDGLVETMKYSNSREK 60
Query: 125 VTLEEIQAALRTKELTNSKD--------LTHEHDEGLSVSRGNGGGRGNRRKSGNKSRFE 176
+ L ++ A R KE S++ G + ++GN G + KS + R
Sbjct: 61 LRLNDVMVAARDKEREMSQNNRLIAEGHYARRRPVGKNNNQGNKGKNRSWSKSADGKRV- 119
Query: 177 CFNCHKMGHFKKDC 190
C+ C K HF + C
Sbjct: 120 CWICGKEKHFNEQC 133
>At3g60170 putative protein
Length = 1339
Score = 60.8 bits (146), Expect = 6e-10
Identities = 48/225 (21%), Positives = 99/225 (43%), Gaps = 18/225 (8%)
Query: 2 SQAEKTEMVD-KARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHR---QFL 57
S E+ ++ D K ++ + + ++L + ++T+ ++W ++ Y + R Q L
Sbjct: 59 SAVEEAKLKDLKVKNFLFQAIDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQAL 118
Query: 58 KQQLYSFRMVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESFKNTM 117
+++ M E + I L +++ ++ +E +L +L F ++
Sbjct: 119 RKEFELLAMKEGEKIDTFLGRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSI 178
Query: 118 LYGKE-GTVTLEEIQAALRTKE------LTNSKDLTHEHDEGLSVSRGNG-------GGR 163
+ T++++E+ +L E + + L H+E S RG G GR
Sbjct: 179 EESNDLSTLSIDELHGSLLVHEQRLNGHVQEEQALKVTHEERPSQGRGRGVFRGSRGRGR 238
Query: 164 GNRRKSGNKSRFECFNCHKMGHFKKDCPEINGNSAQIVYEGYEDV 208
G R N++ EC+ CH +GHF+ +CPE N+ E E++
Sbjct: 239 GRGRSGTNRAIVECYKCHNLGHFQYECPEWEKNANYAELEEEEEL 283
>At4g12200 putative protein
Length = 200
Score = 53.9 bits (128), Expect = 7e-08
Identities = 44/178 (24%), Positives = 74/178 (40%), Gaps = 49/178 (27%)
Query: 66 MVESKAIMEQLTEFNKILDDLENIEVQLEDEDKAILLLCALPKSFESF--KNTMLYGKEG 123
M ESK++ME + EF ++D+L N +V++ DED+AI L+ +LP+ E F + + GK
Sbjct: 1 MGESKSVMENVDEFQWLIDELSNAKVEIFDEDQAIYLMISLPEQIEKFDGRGDYILGKTK 60
Query: 124 TVTLEEIQAALRTKELTNSKDLTHEHDEGLS----------------------------- 154
+ EI + ++ ++ + DEG S
Sbjct: 61 ILARFEILDVIDALKIEEDENKSVGTDEGKSHCVALSLDLEEKKRKAMSMIVQSVENQNL 120
Query: 155 ----VSRGNGGGRGN-------RRKSGNKSRFE-------CFNCHKMGHFKKDCPEIN 194
+ G RR+S ++ R + C+ C + GH+K DCP N
Sbjct: 121 RKKLMKEKTAAGYKETAEELHVRRRSVSRDRSKSKGEKGACWICGEDGHYKNDCPSRN 178
>At4g04600 putative polyprotein
Length = 922
Score = 52.4 bits (124), Expect = 2e-07
Identities = 28/67 (41%), Positives = 41/67 (60%)
Query: 6 KTEMVDKARSAIVLCLGDKVLREVAKEATAASMWAKLESLYMTKSLAHRQFLKQQLYSFR 65
K E ++A + I+ + D VLR+V TAA++W L LYM SL +R + + + YSFR
Sbjct: 79 KIEKSEQAINIIINHISDTVLRKVNHYKTAATLWELLNELYMETSLPNRIYAQLKFYSFR 138
Query: 66 MVESKAI 72
M+ SK I
Sbjct: 139 MMTSKTI 145
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.316 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,317,351
Number of Sequences: 26719
Number of extensions: 228457
Number of successful extensions: 1202
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1023
Number of HSP's gapped (non-prelim): 193
length of query: 240
length of database: 11,318,596
effective HSP length: 96
effective length of query: 144
effective length of database: 8,753,572
effective search space: 1260514368
effective search space used: 1260514368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146972.3