BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146971.7 - phase: 0 /pseudo
(2360 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20390 hypothetical protein 399 e-111
At2g15410 putative retroelement pol polyprotein 282 2e-75
At3g31530 hypothetical protein 281 2e-75
At2g15100 putative retroelement pol polyprotein 264 5e-70
At1g37200 hypothetical protein 228 2e-59
At2g14400 putative retroelement pol polyprotein 217 7e-56
At2g06320 putative retroelement pol polyprotein 201 3e-51
At2g13060 pseudogene 198 3e-50
At1g37060 Athila retroelment ORF 1, putative 197 6e-50
At2g13230 pseudogene 182 3e-45
At1g36830 hypothetical protein 167 7e-41
At2g11940 putative retroelement gag/pol polyprotein 155 3e-37
At2g12040 T10J7.2 134 6e-31
At2g13330 F14O4.9 128 3e-29
At2g07410 putative retroelement pol polyprotein 119 3e-26
At2g07660 putative retroelement pol polyprotein 107 8e-23
At4g04060 putative transposon protein 102 2e-21
At2g10780 pseudogene 102 3e-21
At4g07610 93 2e-18
At4g32220 hypothetical protein 93 2e-18
>At1g20390 hypothetical protein
Length = 1791
Score = 399 bits (1026), Expect = e-111
Identities = 258/746 (34%), Positives = 383/746 (50%), Gaps = 55/746 (7%)
Query: 1633 ENSMGCVLGQQDETGRKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHT 1692
++++ VL ++D ++ I+Y SK E E+RY ++EK A+ +A++LR Y +HT
Sbjct: 1082 DHAVSSVLVREDRG--EQRPIFYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHT 1139
Query: 1693 TWLISKMDPIKYIFEKPALIGRIARWQMLLSEYDIEYRSQKAIKGSILADHLAHQPLEDY 1752
+++ P++ P+ GR+ +W + LSEYDI++R + A+K +LAD L PL+
Sbjct: 1140 IAVLTDQ-PLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLADFLIELPLQSA 1198
Query: 1753 RPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGT 1812
EE W L DG+ + G+GIG L++P
Sbjct: 1199 ERAVSGNRGEE-----------------------WSLYVDGSSSARGSGIGIRLVSPTAE 1235
Query: 1813 HIPFTARLRFDCTNNIAEYEACIMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAG 1872
+ + RLRF TNN+AEYE I G+ A ++I I + DS L+ Q+ G++E +
Sbjct: 1236 VLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQLSGEYEAKNEK 1295
Query: 1873 LIPYRDYARRLLTFFNKVELHHIPRDENQMADALATLSSMIKVNHHNDVPLISVKFLDRP 1932
+ Y + + F +L IPR +N ADALA L+ + +P+ S+ D+P
Sbjct: 1296 MDAYLKIVQLMTKDFENFKLSKIPRGDNAPADALAALALTSDSDLRRIIPVESI---DKP 1352
Query: 1933 AY--VFAAEVV-----------FDDKPWFHDIKVFLQTREYPPGASNKDKKTLRRL---S 1976
+ A E+V D W +I+ +L P DK T RRL +
Sbjct: 1353 SIDSTDAVEIVNTIRSSNAPDPADPTDWRVEIRDYLSDGTLP-----SDKWTARRLRIKA 1407
Query: 1977 SNFFLNGDILYKRNFDTVLLRCVDKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYW 2036
+ + L + L K + +L C+ E + ++ E HEG+ G H G +A K+ + G+YW
Sbjct: 1408 AKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRALALKLKKLGFYW 1467
Query: 2037 MTMESDCYKHTRKCHKCQIYADKIHMPPTTLNLLSSPWPFSMWGIDMIGRIEPKASNGHR 2096
TM SDC T KC +CQ +A IH P L +P+PF W +D++G + AS R
Sbjct: 1468 PTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMRWAMDIVGPMP--ASRQKR 1525
Query: 2097 FILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKEL 2156
FILV DYFTKWVEA SYA + V F+ IICR+G+P IITDNG+ + +
Sbjct: 1526 FILVMTDYFTKWVEAESYATIRANDVQNFVWKFIICRHGLPYEIITDNGSQFISLSFENF 1585
Query: 2157 CDDFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVVTYKD-WHEMLPFALHGYRTSVR 2215
C +KI + S+P PQ NG EA NK I ++K + K W + L L YRT+ R
Sbjct: 1586 CASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDEKKGAWADELDGVLWSYRTTPR 1645
Query: 2216 TSIGATPFSLVYGMEAVLPVEVEIPSLRVLMEVDLSEAEWVQNRYDQLNLIEEKRMAALC 2275
++ TPF+ YGMEA+ P EV SLR M V E + D+L+ +EE R AALC
Sbjct: 1646 SATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELN-DRMMLDRLDDLEEIRNAALC 1704
Query: 2276 HGQLYQKRMKQAFDKKVRPREFKEGDLVLKKIFSFQPD-SRGKWAPNYEGPYVVKKAFSG 2334
Q YQ + +++KV R F GDLVL+K+F + + GK N+EG Y V K
Sbjct: 1705 RIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENTAEINAGKLGANWEGSYQVSKIVRP 1764
Query: 2335 GAMTLQTMDGEELPRPVNTDTVKKYF 2360
G L TM G +PR N+ +K+Y+
Sbjct: 1765 GDYELLTMSGTAVPRTWNSMHLKRYY 1790
Score = 84.3 bits (207), Expect = 8e-16
Identities = 45/138 (32%), Positives = 74/138 (53%)
Query: 844 LSFSDEELPAEGRNHNRALHISVNCKTDALSKVLVDTGSSLNVLSKTTYTQLTYQDAPLR 903
+SF+D +L HN L + + +++VL+DTGSS++++ K T + D ++
Sbjct: 553 ISFTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIK 612
Query: 904 RSGVMVKAFDGSRKDVLGEVVLPITVGPQVFQVNFQVMDIQASYSCLLGRPWIHEAGAVT 963
+ FDG +G + LPI VG + V F V+ A Y+ +LG PWIH+ A+
Sbjct: 613 PVSKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIP 672
Query: 964 STLHQKLKFVKNGKLVTV 981
ST HQ +KF + + T+
Sbjct: 673 STYHQCVKFPTHNGIFTL 690
Score = 52.8 bits (125), Expect = 2e-06
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 183 SVQVPHKFKIPDFEKYKGSSCPEEHLKMY---VRRMPAYAQD-DQILIYYFQESLTGPAS 238
S++ K K+ E Y G + P+E L + + R + D F E LTGPA
Sbjct: 165 SIRGAQKIKL---ESYNGRNDPKEFLTSFNVAINRAELTIDNFDAGRCQIFIEHLTGPAH 221
Query: 239 KWYTNLDKTRVQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWR 295
W++ L + +F L +F++ Y+ ++ +DL +++QG KE+ + + R++
Sbjct: 222 NWFSRLKPNSIDSFHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLRSFVDRFK 278
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 282 bits (721), Expect = 2e-75
Identities = 164/419 (39%), Positives = 230/419 (54%), Gaps = 13/419 (3%)
Query: 1947 WFHDIKVFLQTREYPPGASNKDKKTLRRL---SSNFFLNGDILYKRNFDTVLLRCVDKYE 2003
W +I+ ++ R P KDK RRL S+ + L + L + + VLL C+D E
Sbjct: 1376 WIEEIRSYIADRIVP-----KDKWAARRLRARSAQYTLPHEHLLRWSATGVLLSCLDDEE 1430
Query: 2004 ADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMP 2063
A ++ EIHEG+ G H G +A KI + G YW TM +DC K +C KCQ +A IH+P
Sbjct: 1431 AQQVMREIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHAPFIHIP 1490
Query: 2064 PTTLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVV 2123
L P+PF W +D+I AS ++ILV DYFTKW EA SYA + + V
Sbjct: 1491 SEVLQTAMPPYPFMRWAMDIIRPF--PASRQKKYILVMTDYFTKWFEAESYARIQSKEVQ 1548
Query: 2124 KFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANK 2183
F+ +IIC +G+P I+TDNGT + + C +KI S+P PQ NG EA NK
Sbjct: 1549 NFVWKNIICHHGLPYEIVTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQAEATNK 1608
Query: 2184 NIKRIVQKMVVTYKD-WHEMLPFALHGYRTSVRTSIGATPFSLVYGMEAVLPVEVEIPSL 2242
I ++K + K W + L L YRT+ R S TPFSL YGMEA+ P E +P++
Sbjct: 1609 TILDGLKKRLDEKKGAWADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCEAGLPTV 1668
Query: 2243 RVLMEVDLSEAEWVQNRYDQLNLIEEKRMAALCHGQLYQKRMKQAFDKKVRPREFKEGDL 2302
R M ++ Q D L+ +EE+R AL Q YQ+ + ++KKV+ R F EGDL
Sbjct: 1669 RRSMLINDPTLN-DQMLLDNLDTLEEQRDQALLRIQNYQQAAAKFYNKKVKNRLFAEGDL 1727
Query: 2303 VLKKIF-SFQPDSRGKWAPNYEGPYVVKKAFSGGAMTLQTMDGEELPRPVNTDTVKKYF 2360
VL+K+F + GK ++EGPY++ K G L TMDG +PR N+ +K+Y+
Sbjct: 1728 VLRKVFENTVEQDAGKLGAHWEGPYLISKVVKPGVYELLTMDGTPIPRSWNSANLKRYY 1786
Score = 68.9 bits (167), Expect = 3e-11
Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 1821 RFDCTNNIAEYEACIMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYA 1880
RF +NN AEYEA I G+ A + +K I+ Y DS LV +Q G +E + + Y
Sbjct: 1189 RFPASNNEAEYEALIAGLRLAHGIEVKKIQAYCDSQLVASQFSGNYEAKNERMDAYLKVV 1248
Query: 1881 RRLLTFFNKVELHHIPRDENQMADALATLSSMIKVNHHNDVPLISVKFLDRPA 1933
R L F EL IPR +N ADALA L+S + +P V+ +D P+
Sbjct: 1249 RELSYNFEVFELTKIPRSDNAPADALAVLASTSDPDLRRVIP---VECIDVPS 1298
Score = 66.2 bits (160), Expect = 2e-10
Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 1649 KEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLISKMDPIKYIFEK 1708
++H I+Y+SK E RY LEK A+ +A++LR Y ++T +++ P++ I
Sbjct: 1081 EQHPIFYVSKTLDGAELRYPTLEKLAFAVVISARKLRPYFKSYTVEVLTNQ-PLRTILHS 1139
Query: 1709 PALIGRIARWQMLLSEYDIEYRSQKAIK 1736
P+ GR+A+W + LSEYDI Y+++ K
Sbjct: 1140 PSQSGRLAKWAVELSEYDIAYKNRTCAK 1167
Score = 38.1 bits (87), Expect = 0.062
Identities = 17/74 (22%), Positives = 36/74 (47%)
Query: 229 FQESLTGPASKWYTNLDKTRVQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFK 288
F + L+G A W++ L+ + + L +F++ Y ++ DL M Q KE+ +
Sbjct: 293 FVKHLSGAALTWFSRLEANSIDSVHALTTSFLKNYGVFMEKGASNVDLWTMAQTAKESLR 352
Query: 289 EYAQRWRDTAAQVS 302
+ R+++ V+
Sbjct: 353 SFIGRFKEIVTSVA 366
Score = 31.6 bits (70), Expect = 5.8
Identities = 29/112 (25%), Positives = 48/112 (41%), Gaps = 21/112 (18%)
Query: 841 CNN-LSFSDEELPAEGRNHNRALHISVNCKTDALSKVLVDTGSSLNVLSKTTYTQLTYQD 899
CN ++FS+ ++ G +HN L + + + L ++ +D S +QD
Sbjct: 610 CNEPITFSEADIALPG-SHNDPLVVELKIGENVLLQLEIDVRS--------------FQD 654
Query: 900 APLRRSGVMVKAFDGSRKDVLGEVVLPITVGPQVFQVNFQVMDIQASYSCLL 951
+G FDG +G + LPI VG V F V+D Y+ +L
Sbjct: 655 KVQPLTG-----FDGDTIMTVGTITLPIYVGGTVSWFEFAVVDKPIIYNVIL 701
>At3g31530 hypothetical protein
Length = 831
Score = 281 bits (720), Expect = 2e-75
Identities = 194/635 (30%), Positives = 305/635 (47%), Gaps = 121/635 (19%)
Query: 1649 KEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLISKMDPIKYIFEK 1708
++ I+Y+S+ FT ESRY +EK A+ +A++LR Y +H+ ++ M P++ I
Sbjct: 303 EQKLIFYVSQTFTSAESRYPQMEKLALAVVMSAQKLRPYFQSHSIIVMGSM-PLRVILHS 361
Query: 1709 PALIGRIARWQMLLSEYDIEYRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLK 1768
P+ GR+A+W + LSEYDIEY+++ K +LAD + P ++ R
Sbjct: 362 PSQSGRLAKWTIELSEYDIEYQNKTCAKSQVLADFIVELPTKEAR--------------- 406
Query: 1769 MKDCDEPLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGTHIPFTARLRFDCTNNI 1828
+ PL D+ W L DG+ + G+G+G L +P G + TNN+
Sbjct: 407 ----ENPL-------DTTWLLHVDGSSSKQGSGVGIRLTSPTG-----------EATNNV 444
Query: 1829 AEYEACIMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFN 1888
AEYEA + G+ A L+I + DS L+ NQ G++ T + Y + + L F+
Sbjct: 445 AEYEALVAGLNLAWGLKIGKTRAFCDSQLIANQFNGEYTTQDKKMEAYLIHVQNLAKNFD 504
Query: 1889 KVELHHIPRDENQMADALATLSSMIKVNHHNDVPLISVKFLDRPA-------YVFAAEVV 1941
+ EL IPR EN ADALA L+S + +P V+F+++P+ +V ++
Sbjct: 505 EFELTRIPRGENTSADALAALASTSDTSLKRVIP---VEFIEKPSIELGKEEHVLPIQIS 561
Query: 1942 FD-DKP------WFHDIKVFLQTREYPPGASNKDK-KTLRRLSSNFFLNGDILYKRNFDT 1993
D D P W I ++ + P S+K K + L+ ++ F L LYK
Sbjct: 562 ADQDDPDDCNSEWMEPIISYISEGKLP---SDKWKARKLKAQAARFVLVDTKLYKWRLSG 618
Query: 1994 VLLRCVDKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKC 2053
L+ CV+ ++ EIH GS
Sbjct: 619 PLMTCVEAEAICKIMKEIHSGS-------------------------------------- 640
Query: 2054 QIYADKIHMPPTTLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAAS 2113
+A IH P L+ ++SP+PF W +D+IG + P S + +LV DYF+KW+EA S
Sbjct: 641 --HAPTIHQPAELLSSIASPYPFMRWSMDIIGPMHP--SKQKKLVLVLTDYFSKWIEAES 696
Query: 2114 YANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQ 2173
YA++ V F+ HI+CR+GIP I+TDNG+ + + CD + I S+P PQ
Sbjct: 697 YASIKDAQVENFVLKHILCRHGIPYEIVTDNGSQFISTRFQGFCDKWGIRLSKSTPRYPQ 756
Query: 2174 MNGAVEAANKNIKRIVQKMVVTYKDWHEMLPFALHGYRTSVRTSIGATPFSLVYGMEAVL 2233
NG EAAN+ L L +RT+ R + TPF+ +YG E V+
Sbjct: 757 GNGQAEAANE-------------------LEGVLWLHRTTPRRATRETPFASIYGTECVI 797
Query: 2234 PVEVEIPSLRVLMEVDLSEAEWVQNRYDQLNLIEE 2268
P E+ +PSLR + + ++ + Q D+L+LI+E
Sbjct: 798 PAEMIVPSLRRSLSPE-NDPDNTQTPLDELDLIDE 831
Score = 40.8 bits (94), Expect = 0.010
Identities = 19/53 (35%), Positives = 29/53 (53%)
Query: 920 LGEVVLPITVGPQVFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLKF 972
LG + LP+ V+F + D Y+ ++G PW+++ AV ST H LKF
Sbjct: 3 LGTIKLPVRAKGVTKIVDFSITDQPTVYNAIIGTPWLNQFRAVASTYHLCLKF 55
>At2g15100 putative retroelement pol polyprotein
Length = 1329
Score = 264 bits (674), Expect = 5e-70
Identities = 191/703 (27%), Positives = 331/703 (46%), Gaps = 71/703 (10%)
Query: 1664 ESRYSMLEKTCCALAWAAKRLRHYMINHTTWLISKMDPIKYIFEKPALIGRIARWQMLLS 1723
++RY M+EK A+ AA++LR Y +H +++ + P++ I P GR+ +W + LS
Sbjct: 691 KTRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSL-PLRTILHSPTQSGRLGKWAIELS 749
Query: 1724 EYDIEYRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDP 1783
E+D+E+R++ ++ ++ ++ F + + D G
Sbjct: 750 EFDLEFRARTSLNSTMDTSR------------QWGFIKTWVRSRNLSDAPTANRYSGEYE 797
Query: 1784 DSVWGLIFDGAVNVYGNGIGAVLLTPKGTHIPFTARLRFDCTNNIAEYEACIMGIEEAID 1843
D + Y N + V G F N+ A A + E
Sbjct: 798 AK------DACMEAYLNLVREV----SGRFEQFELTRIPRAENSAANALAALASTFEVTL 847
Query: 1844 LRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHHIPRDENQMA 1903
R+ +E ++ +++I + R RRL + LH + DE +++
Sbjct: 848 PRVIPVETISQPSIRLDEI---------SFVTTRAMRRRLDAQSAENGLHQLGDDE-EIS 897
Query: 1904 DAL----ATLSSMIKVNHHNDVPLISVKFLDRPAYVFAAEVVFDDKPWFHDIKVFLQTRE 1959
DA+ + + NH+ +P D+P + + A+ W I+ ++
Sbjct: 898 DAVHPTEIVENQSLPDNHNAPLP-------DQPPHDWGAD-------WREPIRDYILNGT 943
Query: 1960 YPPGASNKDKKTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEADLLIHEIHEGSFGIH 2019
P A + L+ + F + DILY+R F C+ + ++ E+H+G+ G H
Sbjct: 944 LP--AEKWAARKLKATCARFCIANDILYRRIFSAPDAVCIFGEQTRTVMKEVHDGTCGNH 1001
Query: 2020 PNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTLNLLSSPWPFSMW 2079
G ++A K+ + GYYW T+ +DC + RKC +CQ +A I P L +S+P+PF W
Sbjct: 1002 TGGRSLAFKVRKYGYYWPTLVADCEAYARKCEQCQKHAPLILQPAELLTTVSAPYPFMKW 1061
Query: 2080 GIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGIPNR 2139
+D++G + T+ VEAA+Y+N+T V FI IICR+G+P
Sbjct: 1062 LMDIVGPLHVS---------------TRGVEAAAYSNITHVQVWNFIWKDIICRHGLPYE 1106
Query: 2140 IITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVVTYKD- 2198
I+TDNG+ ++ + C++++I +S+P PQ NG EA NK I ++K + YK
Sbjct: 1107 IVTDNGSQFISEQFEVFCEEWQIRLSHSTPRYPQGNGQAEAMNKTIISNLKKKLNAYKGA 1166
Query: 2199 WHEMLPFALHGYRTSVRTSIGATPFSLVYGMEAVLPVEVEIPSLRVLMEVDLSEAEWVQN 2258
W L L RT+ R + TPFSL+YGMEAV+P E+++PS R + +E E +
Sbjct: 1167 WFGELQNVLWAVRTTPRRATDETPFSLIYGMEAVIPAEIKVPSARRIRNPQ-NETENNEM 1225
Query: 2259 RYDQLNLIEEKRMAALCHGQLYQKRMKQAFDKKVRPREFKEGDLVLKKIFSFQPD-SRGK 2317
D ++ I+E+R AL Q Y + ++ VR R F+ G LVL+++ + + GK
Sbjct: 1226 IIDVIDTIDERRNRALARMQNYHNAGARYYNSNVRNRSFEVGTLVLRRVQQNKAEKGAGK 1285
Query: 2318 WAPNYEGPYVVKKAFSGGAMTLQTMDGEELPRPVNTDTVKKYF 2360
++EGPY + G L M+G+ + R N+ +K+++
Sbjct: 1286 LGISWEGPYKITHVVRNGVYRLINMEGKTVRRAWNSMHLKRFY 1328
Score = 54.7 bits (130), Expect = 6e-07
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 920 LGEVVLPITVGPQVFQVNFQVMDIQASYSCLLGRPWIHEAGAVTSTLHQKLKF-VKNGKL 978
LG VVLP+T V V F V D A+Y+ +LG PW++E V ST HQ +KF GK+
Sbjct: 353 LGTVVLPVTAQGVVKMVEFTVFDRPAAYNVILGTPWLYEMKVVPSTYHQCVKFPTPVGKM 412
Query: 979 VTVNGEEALLVSH 991
++ E ++SH
Sbjct: 413 TGISTE---VISH 422
Score = 49.3 bits (116), Expect = 3e-05
Identities = 32/108 (29%), Positives = 51/108 (46%), Gaps = 7/108 (6%)
Query: 190 FKIPDFEKYKGSSCPEEHLKMY---VRRMPAYA-QDDQILIYYFQESLTGPASKWYTNLD 245
FK+P Y G +EHL + R+P ++D L F E+L G A W+T L+
Sbjct: 173 FKLP---VYNGKGDLKEHLTSFQVIAGRVPLEPHEEDAGLCKLFSENLFGLALTWFTQLE 229
Query: 246 KTRVQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQR 293
+ + F+ L AF++QY Y ++ + L +Q E + Y R
Sbjct: 230 EGSIDNFKQLSTAFIKQYEYFINSDITEAHLWNFSQSADEPLRTYIYR 277
>At1g37200 hypothetical protein
Length = 1564
Score = 228 bits (582), Expect = 2e-59
Identities = 166/581 (28%), Positives = 264/581 (44%), Gaps = 97/581 (16%)
Query: 1644 DETGRKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLISKMDPIK 1703
D G+K IYY+SK + E+ Y +EK A+ +A++LR Y+ +H ++ PI+
Sbjct: 927 DHEGQKP--IYYVSKTLIDAETHYRAMEKLALAVVMSARKLRQYLQSHPI-VVMTSQPIR 983
Query: 1704 YIFEKPALIGRIARWQMLLSEYDIEYRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEE 1763
I R+A+W + LSEYDIEYR++ + K +LAD + PL D
Sbjct: 984 TILHSTTQSSRLAKWAIELSEYDIEYRTRTSFKAQVLADFVIELPLADL----------- 1032
Query: 1764 IMYLKMKDCDEPLFGEGPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGTHIPFTARLRFD 1823
+G + + W L DG+ N G+G G L +P G I + RL F+
Sbjct: 1033 ---------------DGTNSNKKWLLHVDGSSNRQGSGEGIQLTSPTGEVIEQSFRLGFN 1077
Query: 1824 CTNNIAEYEACIMGIEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRL 1883
+NN +EYEA I GI+ A +RI++I + DS LV +Q G++E + Y + + L
Sbjct: 1078 ASNNESEYEALIDGIKLAQGMRIRDIHAHSDSQLVTSQFHGEYEAKDERMEAYLELVKTL 1137
Query: 1884 LTFFNKVELHHIPRDENQMADALATLSSMIKVNHHNDVPL-------------------- 1923
F EL IPR EN DALA L+S + +P+
Sbjct: 1138 TQQFESFELTRIPRGENTSTDALAALASTLDPFVKRIIPVEGIEHPSIDLTVKHAGMETS 1197
Query: 1924 -------------ISVKFLDRPAYVFAAE-----------VVFDDKP---WFHDIKVFLQ 1956
+ + L A AAE ++ +P W I +++
Sbjct: 1198 ATCNFTRVTRSTTAAARALAAAAEAGAAEEEAKLRTPEQLASYEPEPYNDWRIPIIDYIE 1257
Query: 1957 TREYPPGASNKDKKTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEADLLIHEIHEGSF 2016
PP + + L+ S+ + + L KR+ + C + L+ +HEG
Sbjct: 1258 RGITPP--DKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYGQQTKDLMKSMHEGQC 1315
Query: 2017 GIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTLNLLSSPWPF 2076
G H +G T+ M +DC H+ +C KCQ +A +H PP ++ +SSP+PF
Sbjct: 1316 GSHYSGRTLR----------CIMLADCIAHSLRCDKCQRHAPTLHQPPEEMSSISSPYPF 1365
Query: 2077 SMWGIDMIGRIEPKASNGH---RFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICR 2133
W +D++ +E AS G + +LV DY TKW+E ++ VT++ V F+ +I+ R
Sbjct: 1366 MKWSMDVVRPME--ASGGKKRLKNLLVLTDYSTKWIEGKAFQQVTEKQVEVFLLENIVYR 1423
Query: 2134 YGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQM 2174
+GIP I+TDNG + K F ++ P+ P +
Sbjct: 1424 HGIPYEIVTDNGLTSPREKSKH----FATSGRSALPHPPPL 1460
Score = 52.8 bits (125), Expect = 2e-06
Identities = 32/98 (32%), Positives = 54/98 (54%), Gaps = 2/98 (2%)
Query: 2264 NLIEEKRMAALCHGQLYQKRMKQAFDKKVRPREFKEGDLVLKKIFSFQPD-SRGKWAPNY 2322
+ I+E+R A+ Q YQ+ + ++ ++ R F+ G+LVL+K+FS + + GK N+
Sbjct: 1465 DFIDERRDHAMIQVQNYQQPAVRYYNSNIKIRRFEVGELVLRKVFSNTRELNAGKLGTNW 1524
Query: 2323 EGPYVVKKAFSGGAMTL-QTMDGEELPRPVNTDTVKKY 2359
EGPY + + G L + +G RP N +KKY
Sbjct: 1525 EGPYRITEVVRDGIYKLVKVFNGVPELRPWNAMHLKKY 1562
Score = 40.0 bits (92), Expect = 0.016
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 944 QASYSCLLGRPWIHEAGAVTSTLHQKLKFVKNGKLVTVNGEE 985
+A ++ +LGRPW+H AV ST HQ +KF + + G +
Sbjct: 529 KAPFNAILGRPWLHAMKAVPSTYHQCIKFPSEKGIAVIYGSQ 570
>At2g14400 putative retroelement pol polyprotein
Length = 1466
Score = 217 bits (552), Expect = 7e-56
Identities = 164/542 (30%), Positives = 254/542 (46%), Gaps = 96/542 (17%)
Query: 1857 LVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHHIPRDENQMADALATLS--SMIK 1914
+++NQ G +E + + Y + L F K EL IPR +N ADALA L+ S +
Sbjct: 790 IIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIRIPRGQNTTADALAALASTSDPE 849
Query: 1915 VNHHNDVPLISVKFL--DRPAYVFA-AEVVFDDKPWFHDIKVFLQTREYPPGASNKDKKT 1971
VN V IS + + ++ A+V + D+ D V E PP K K+
Sbjct: 850 VNSIIPVECISERSIKEEKEAFVVTRSRAAARDRG---DTAV-----ELPPVKRRKSKEA 901
Query: 1972 ---------------LRRLSSNFFLNGDI----------------------LYKRNFDTV 1994
+ + S+ + + LY+R
Sbjct: 902 TVPKPAVQENIGIELIEEVISDAKIEAETEPWVDEDILAPNEHPEPEALNSLYRRGVSDP 961
Query: 1995 LLRCVDKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQ 2054
L + ++++ E+HEG G H +G MA KI + YYW TM +DC K+ ++C +CQ
Sbjct: 962 YLLSIFGPVVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDCVKYAQRCKRCQ 1021
Query: 2055 IYADKIHMPPTTLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASY 2114
++A IH P + +S+P+PF W +D+IG + +++ G +++LV DYF+KW+EA +
Sbjct: 1022 LHAPLIHQPSELFSSISAPYPFMRWSMDIIGPLH-RSTRGVQYLLVLTDYFSKWIEAEA- 1079
Query: 2115 ANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQM 2174
I+ +GI K+ + S+ PQ
Sbjct: 1080 ---------------ILLNWGI------------------------KVSY--STLRYPQG 1098
Query: 2175 NGAVEAANKNIKRIVQKMVVTYKD-WHEMLPFALHGYRTSVRTSIGATPFSLVYGMEAVL 2233
NG EAANK I ++K + K W++ L L YRT+ R S G TPFSLVYGM+AV+
Sbjct: 1099 NGQAEAANKTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTGETPFSLVYGMKAVV 1158
Query: 2234 PVEVEIPSLRVLMEVDLSEAEWVQNRYDQLNLIEEKRMAALCHGQLYQKRMKQAFDKKVR 2293
P E+ +P LR E L+E E D L+ I E+R AL Q YQ + ++ KV+
Sbjct: 1159 PAELNVPGLR-RTEAPLNEKENSAMLDDSLDTINERRDQALIQIQNYQHAAARYYNSKVK 1217
Query: 2294 PREFKEGDLVLKKIF-SFQPDSRGKWAPNYEGPYVVKKAFSGGAMTLQTMDGEELPRPVN 2352
R F GD VLK++F + + + GK N+EGPY+V + G L+ ++ + RP N
Sbjct: 1218 SRPFFVGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVRNGVYRLKDLEDRPVQRPWN 1277
Query: 2353 TD 2354
+
Sbjct: 1278 VN 1279
Score = 52.8 bits (125), Expect = 2e-06
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 194 DFEKYKGSSCPEEHLKMYV----RRMPAYAQDDQILIYYFQESLTGPASKWYTNLDKTRV 249
+ E Y G P+ +L ++ R A +D F E+L G A W+T L+ +
Sbjct: 161 NLESYNGLEDPKGYLAAFLIAAGRVDLNEADEDVRYCKLFSENLCGQALMWFTQLEPGSI 220
Query: 250 QTFRDLCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRDTAAQVSPRIEEKE 309
F +L F++QYS +D + +DL ++QG ET + + +++ +++S ++
Sbjct: 221 SNFNELSVVFLKQYSILMDKSISDTDLWNLSQGPNETLRAFITKFKYVLSKLSRISQQSA 280
Query: 310 MTKL 313
++ L
Sbjct: 281 LSAL 284
Score = 34.7 bits (78), Expect = 0.68
Identities = 16/62 (25%), Positives = 38/62 (60%)
Query: 843 NLSFSDEELPAEGRNHNRALHISVNCKTDALSKVLVDTGSSLNVLSKTTYTQLTYQDAPL 902
++ F ++E R+H+ AL ++++ +S++L+DTGSS++++ +T ++ A +
Sbjct: 408 SILFDEKETQHLERSHDDALVVTLDVANFEVSRILIDTGSSVDLIFLSTLERMGISRADV 467
Query: 903 RR 904
R
Sbjct: 468 NR 469
>At2g06320 putative retroelement pol polyprotein
Length = 466
Score = 201 bits (512), Expect = 3e-51
Identities = 133/422 (31%), Positives = 215/422 (50%), Gaps = 21/422 (4%)
Query: 1946 PWFHDIKVFLQTREYPPGASNKDKKTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEAD 2005
PW+ D +L PP ++ ++K R +++ + LY D + V + E +
Sbjct: 38 PWYADHVNYLACGIEPPNLTSYERKNFFRDIHHYYWDEPYLYTLCKDKIYRSYVSEDEVE 97
Query: 2006 LLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPT 2065
++ H+ ++G H KIL+AG++W TM D + KC CQ +
Sbjct: 98 GILLHCHDSAYGGHFATFKTVSKILQAGFWWPTMFKDAQEFVSKCDSCQRKGNISRRNEM 157
Query: 2066 TLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKF 2125
N + F +WGID +G +S G+++ILV +DY +KWVEA + +VV+K
Sbjct: 158 PQNPILEVDIFDVWGIDFMGPFP--SSYGNKYILVVVDYVSKWVEAIASPTNDAKVVLKL 215
Query: 2126 IKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNI 2185
K I R+G+ +I+D G + NK+ + L ++H ++PY PQ +G VE +N+ I
Sbjct: 216 FKTIIFPRFGVSWVVISDGGKHFINKVFENLLKKHGVKHKVATPYHPQTSGQVEISNREI 275
Query: 2186 KRIVQKMV-VTYKDWHEMLPFALHGYRTSVRTSIGATPFSLVYGMEAVLPVEVEIPSLRV 2244
K I++K V +T KDW L AL Y+T+ +T IG TPF+L+ L VE+E ++
Sbjct: 276 KTILEKTVGITRKDWSTKLDDALWAYKTAFKTPIGTTPFNLLCVKSCHLHVELEYKAMWA 335
Query: 2245 --LMEVDLSEAEWVQNRYDQLNLIEEKRMAALCHGQLYQKRMKQAFDKKVRPREFKEGDL 2302
L+ D+ AE + R QL+ ++E R+ A ++Y++R K DKK+ ++F+ GD
Sbjct: 336 VKLLNFDIKTAE--EKRLIQLSELDEIRLEAYESSKIYKERTKLFHDKKIITKDFQVGDQ 393
Query: 2303 VL-----KKIFSFQPDSRGKWAPNYEGPYVVKKAFSGGAMTLQTMDGEELPRPVNTDTVK 2357
VL KIF GK + GP+ + + GA+TL G+ VN +K
Sbjct: 394 VLLFNSRLKIFP------GKLKSRWSGPFCITEVRPYGAVTLA---GKSGVFTVNGQRLK 444
Query: 2358 KY 2359
KY
Sbjct: 445 KY 446
>At2g13060 pseudogene
Length = 930
Score = 198 bits (504), Expect = 3e-50
Identities = 124/385 (32%), Positives = 195/385 (50%), Gaps = 20/385 (5%)
Query: 1937 AAEVVFDDKPWFHDIKVFLQTREYPPGASNKDKKTLRRLSSNFFLNGDILYKRNFDTVLL 1996
A V D PW+ DI +L P ++ +KK R + + LYK ++D +
Sbjct: 128 AVTAVEKDYPWYADIVNYLAADVEPDNFTDYNKKRFLREIRRYQWDEPYLYKHSYDGIYR 187
Query: 1997 RCVDKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQI- 2055
RC+ E ++ H S+G H K+L+A ++W TM D K +C CQ
Sbjct: 188 RCIAATEVPSILSHCHSSSYGGHFATFKTVSKVLQADFWWPTMFRDTQKFISQCDPCQRR 247
Query: 2056 --YADKIHMPPTTLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAAS 2113
+ + MPP N F WGID +G P SN + +ILV +DY +KWVEA +
Sbjct: 248 GKISKRNEMPP---NFRLEVEVFDRWGIDFMGPFPP--SNKNLYILVDVDYVSKWVEAIA 302
Query: 2114 YANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQ 2173
VV+K K+ I R+G+P +I+D + NK++++L + ++H ++PY PQ
Sbjct: 303 SLKNDSAVVMKLFKSIIFPRFGVPRIVISDGDKHFINKILEKLLLQYGVQHRVATPYHPQ 362
Query: 2174 MNGAVEAANKNIKRIVQKMV-VTYKDWHEMLPFALHGYRTSVRTSIGATPFSLVYGMEAV 2232
+G VE +N+ IK I++K V K+W L AL Y+T+ +T +G TPF L+YG
Sbjct: 363 TSGQVEVSNRQIKEILEKTVGKAKKEWSYKLYDALWAYKTAFKTPLGTTPFHLLYGKACH 422
Query: 2233 LPVEVEIPSLRV--LMEVDLSEAEWVQNRYDQLNLIEEKRMAALCHGQLYQKRMKQAFDK 2290
LPVE+E + +M D+ A + ++E R+ A + +LY++R K DK
Sbjct: 423 LPVELEHKAAWAVKMMNFDIKSAGESE--------LDEIRIHAYDNSKLYKERTKAYHDK 474
Query: 2291 KVRPREFKEGDLVLKKIFSFQPDSR 2315
K+ R F+ D +L + F+ D R
Sbjct: 475 KILTRTFEPNDQIL-RFFTISRDFR 498
Score = 41.2 bits (95), Expect = 0.007
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 1714 RIARWQMLLSEYDIEYRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYL 1767
R+ W +LL E+DIE R +K ++ + ADHL+ ++D PI DF EE +Y+
Sbjct: 9 RLLIWILLLQEFDIEVRDKKGVENGV-ADHLSRIRIDDDVPIN-DFLPEENIYM 60
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 197 bits (501), Expect = 6e-50
Identities = 136/420 (32%), Positives = 210/420 (49%), Gaps = 45/420 (10%)
Query: 1946 PWFHDIKVFLQTREYPPGASNKDKKTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEAD 2005
PW+ D +L + E PP S+ +KK + ++F+ + LY D + CV + E +
Sbjct: 1334 PWYADHVNYLVSGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDKIYRTCVSEDEIE 1393
Query: 2006 LLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPT 2065
++ H ++G H KIL+AG++W +M D + KC +
Sbjct: 1394 GILLHCHGFAYGGHFATFKTMSKILQAGFWWPSMFKDAQEFISKCDSFE----------- 1442
Query: 2066 TLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKF 2125
F +WGID +G +S G+++ILVAIDY +KWVEA + +VV+K
Sbjct: 1443 ---------NFDVWGIDFMGPFP--SSYGNKYILVAIDYVSKWVEAIASHTNDARVVLKL 1491
Query: 2126 IKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNI 2185
K I R+G+P +I+D G + NK + L ++H S G VE +N+ I
Sbjct: 1492 FKTIIFPRFGVPRIVISDGGKHFINKGFENLLKKHGVKHKTS--------GQVEISNREI 1543
Query: 2186 KRIVQKMV-VTYKDWHEMLPFALHGYRTSVRTSIGATPFSLVYGMEAVLPVEVEIPSLRV 2244
K I++K V T KDW L L YRT+ +T IG TPF+L+YG LPVE+E ++
Sbjct: 1544 KAILEKTVGSTRKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVELEYKAMWA 1603
Query: 2245 --LMEVDLSEAEWVQNRYDQLNLIEEKRMAALCHGQLYQKRMKQAFDKKVRPREFKEGDL 2302
L+ D+ AE + R QLN + + R+ A ++Y++R K DKK+ R+FK GD
Sbjct: 1604 VKLLNFDIKTAE--EKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQ 1661
Query: 2303 VL---KKIFSFQPDSRGKWAPNYEGPYVVKKAFSGGAMTLQTMDGEELPRPVNTDTVKKY 2359
VL ++ F + +W+ GP+ V GA+TL +G+ VN +KKY
Sbjct: 1662 VLLFNSRLRLFPGKLKSRWS----GPFSVTAVRPYGAITLAGKNGD---FTVNGQRLKKY 1714
Score = 60.1 bits (144), Expect = 2e-08
Identities = 30/107 (28%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 1662 ECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLISKMDPIKYIFEKPALIGRIARWQML 1721
+ + RY+ EK A+ +A ++ R Y++ + + +++I+ K R+ RW +L
Sbjct: 1221 DAQVRYATTEKELLAVVFAFEKFRSYLVGSKVTIYTDHAALRHIYAKKDTKPRLLRWILL 1280
Query: 1722 LSEYDIEYRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLK 1768
L E+D+E +K I+ + ADHL+ +ED I P+E++M ++
Sbjct: 1281 LQEFDMEIVDKKGIENGV-ADHLSRMRIEDEVLIDDSMPEEQLMAIQ 1326
Score = 36.6 bits (83), Expect = 0.18
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 221 DDQILIYYFQESLTGPASKWYTNLDKTRVQTFRDLCEAFVEQYSYNVDMTPDRSDLQAMT 280
+D + F SL A +W +L + + ++ D +AF+ ++ N R+D+ T
Sbjct: 83 EDGFKLRLFPFSLGDKAHQWEKSLPQGSITSWNDCKKAFLAKFFSNSRTARLRNDISGFT 142
Query: 281 QGDKETFKEYAQRWRDTAAQ 300
Q + ETF E +R++ Q
Sbjct: 143 QTNNETFYEAWERFKGYQTQ 162
>At2g13230 pseudogene
Length = 353
Score = 182 bits (461), Expect = 3e-45
Identities = 120/368 (32%), Positives = 187/368 (50%), Gaps = 39/368 (10%)
Query: 1869 LHAGLIPYRDYARRLLTFFNKVELHHIPRDENQMADALATLSSMIKVNHHNDVPLISVKF 1928
+ A L +D+A++ F++ +L IPR EN ADALA L+S +N +P V+F
Sbjct: 1 MEAYLALVQDHAKQ----FHEFKLTRIPRGENTSADALAALASTSDLNMRRVIP---VEF 53
Query: 1929 LDRPA-------YVFAAEVVFD-------------DKPWFHDIKVFLQTREYPPGASNKD 1968
+++P+ + F +VV D W I+ F+ R+ +
Sbjct: 54 IEKPSIELDKVEHAFPIQVVAGYEDASDNSPSLGCDSEWIEPIRNFISKRKVR--LDKWE 111
Query: 1969 KKTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEADLLIHEIHEGSFGIHPNGHTMAKK 2028
+ L+ ++ F L + L+K L+ CV+K A ++ E+H GS G + G +A K
Sbjct: 112 ARKLKAEAARFVLVEEKLFKWRLSGPLMTCVEKEAARKVMKEVHGGSCGNNSGGRALAIK 171
Query: 2029 ILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTLNLLSSPWPFSMWGIDMIGRIE 2088
I R GY+W TM DC KCQ A IH+P L+ ++SP+P W +D+IG +
Sbjct: 172 IKRLGYFWPTMIKDC-------EKCQRNAPTIHLPAELLSSIASPYPLMRWSMDIIGPMH 224
Query: 2089 PKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNL 2148
AS + +LV DYF+K EA SYA++ + V F+ HI+CR+G+P I+TDNG+
Sbjct: 225 --ASKQKKLVLVLTDYFSKLREAESYASIKEAQVESFMWKHILCRHGVPYEIVTDNGSQF 282
Query: 2149 NNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVVTYK-DWHEMLPFAL 2207
+ + CD + I S+P Q NG +AANK I ++K + K W + L L
Sbjct: 283 ISTRFQGFCDKWGIRLSKSTPRYLQGNGQADAANKTILDGLKKRLTAKKGSWVDELEGVL 342
Query: 2208 HGYRTSVR 2215
+RT+ R
Sbjct: 343 WSHRTTPR 350
>At1g36830 hypothetical protein
Length = 243
Score = 167 bits (423), Expect = 7e-41
Identities = 94/233 (40%), Positives = 145/233 (61%), Gaps = 7/233 (3%)
Query: 2081 IDMIGRIEPKASNGHRFI---LVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGIP 2137
+D++G +E AS G + + LV DY TKW+EA ++ VT++ V F+ +I+C++GIP
Sbjct: 1 MDVVGPME--ASGGKKKLKNLLVLTDYSTKWIEAKAFQQVTEKQVEDFLWENIVCQHGIP 58
Query: 2138 NRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVVTYK 2197
IITDNGTNL ++ +K CD +KI S+P+ PQ NG EAANK I ++K++ + K
Sbjct: 59 YEIITDNGTNLTSRKIKAFCDKWKIRLTTSTPHYPQGNGQAEAANKAILSNIKKILDSKK 118
Query: 2198 D-WHEMLPFALHGYRTSVRTSIGATPFSLVYGMEAVLPVEVEIPSLRVLMEVDLSEAEWV 2256
W ++L L YRT+ R S TPFSL YG+EAV+P+ IPS+R S+
Sbjct: 119 SMWSDVLHGVLWAYRTTPRKSTQETPFSLAYGLEAVIPIVTIIPSVRRTASHANSDMN-T 177
Query: 2257 QNRYDQLNLIEEKRMAALCHGQLYQKRMKQAFDKKVRPREFKEGDLVLKKIFS 2309
Q D ++ I+E+R A+ Q YQ+ + + ++ ++ R F+ G+LVL+K+FS
Sbjct: 178 QMLRDNMDFIDERRDQAMIRVQNYQQAVTRYYNSNIKIRRFEVGELVLRKVFS 230
>At2g11940 putative retroelement gag/pol polyprotein
Length = 1212
Score = 155 bits (391), Expect = 3e-37
Identities = 144/551 (26%), Positives = 225/551 (40%), Gaps = 125/551 (22%)
Query: 1856 ALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHHIPRDENQMADALATLSSMIKV 1915
A + G +E + Y D R L F K EL +PR EN ADALA L+S ++
Sbjct: 740 ATTASDYSGDYEAKDNRMEAYLDLLRELAEKFEKFELIKVPRAENSAADALAALASTPEI 799
Query: 1916 NHHNDVPLISVKFLDRPAYVFAAEVVFDDKPWFHDIKVFLQTREYPP------------- 1962
+ISV+ + +P + E+ F + ++V E
Sbjct: 800 TVRR---IISVETIAQPN-IRIEEINFVTRAMRRQLEVQANNPELQQLHDEDEIPEAVPL 855
Query: 1963 -----------------------------GASNKDKKTLRRLSSN---FFLNGDILYKRN 1990
G DK R+L + F L DILY+R
Sbjct: 856 VADEDSTEYNLPHDWGADWREPIRNYIFNGVLPTDKWEARKLKATCARFCLADDILYRRI 915
Query: 1991 FDTVLLRCVDKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKC 2050
C+ + +I EIH+G+ G H G ++A K+ + GY+W TM +DC
Sbjct: 916 ISAPDAICIFGEQTRTVIKEIHDGTCGNHSGGRSLAFKLKKYGYFWPTMVADC------- 968
Query: 2051 HKCQIYADKIHMPPTTLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVE 2110
+ YA H T + SP PF W +D++G + ++ G RF+L+ +WVE
Sbjct: 969 ---EAYA---HRSRRTFHFGISPLPFMKWSMDIVGPLHV-STRGVRFLLL------EWVE 1015
Query: 2111 AASYANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPY 2170
AA+Y+ +T+ V FI IICR+G+P I+TDNG ++ K +++I + S+P
Sbjct: 1016 AAAYSYITQVQVRHFIWKEIICRHGLPYEIVTDNGPQFISEQFKAFYAEWQIRLNRSTPR 1075
Query: 2171 RPQMNGAVEAANKNIKRIVQKMVVTYKDWHEMLPFALHGYRTSVRTSIGATPFSLVYGME 2230
PQ G VEA
Sbjct: 1076 YPQ--GNVEA-------------------------------------------------- 1083
Query: 2231 AVLPVEVEIPSLRVLMEVDLSEAEWVQNRYDQLNLIEEKRMAALCHGQLYQKRMKQAFDK 2290
V+P E+++P R + +EA + D ++ I+E+R AL Q Y Q ++
Sbjct: 1084 -VIPAEIKVPRTRRIRN-PKNEAANNKMMVDVIDTIDERRNRALVRMQNYHNAAAQYYNS 1141
Query: 2291 KVRPREFKEGDLVLKKIFSFQPD-SRGKWAPNYEGPYVVKKAFSGGAMTLQTMDGEELPR 2349
VR R F G LVL++I + GK ++EGPY + G L M+G+ + R
Sbjct: 1142 NVRSRSFDVGTLVLRRIHQNTAEKGAGKLGISWEGPYKITHIVRNGD-CLINMEGKTVRR 1200
Query: 2350 PVNTDTVKKYF 2360
N +K+++
Sbjct: 1201 AWNAAHLKRFY 1211
Score = 81.6 bits (200), Expect = 5e-15
Identities = 41/117 (35%), Positives = 74/117 (63%), Gaps = 3/117 (2%)
Query: 1633 ENSMGCVLGQQDETGRKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHT 1692
EN++ VL + + + E I+Y+SK F++ E+RY M+EK A+ AA++LR Y +H
Sbjct: 626 ENAISGVLVRVERSD--ERPIFYVSKSFSDVETRYPMMEKLALAVVTAARKLRPYFQSHP 683
Query: 1693 TWLISKMDPIKYIFEKPALIGRIARWQMLLSEYDIEYRSQKAIKGSILADHLAHQPL 1749
+++ + P++ I P GR+A+W + LSE+++E+ ++ ++K +LAD L PL
Sbjct: 684 IVVLTSL-PLRTILHSPNQSGRLAKWAIELSEFNLEFHARTSLKSQVLADFLIELPL 739
>At2g12040 T10J7.2
Length = 976
Score = 134 bits (337), Expect = 6e-31
Identities = 81/243 (33%), Positives = 128/243 (52%), Gaps = 22/243 (9%)
Query: 2076 FSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYG 2135
F WGI+ +G I P SN + +ILV +DY +KWVEA + VV+K K I +G
Sbjct: 569 FDCWGINFMGPIPP--SNKNLYILVVVDYVSKWVEAIASPKNDSAVVMKLFKCIIFPHFG 626
Query: 2136 IPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVVT 2195
+P +I+D G + NK++ +L + ++H ++PY PQ +G VE +N+ IK I++K V
Sbjct: 627 VPRIVISDGGKHFINKILTKLLLQYGVQHRVATPYHPQTSGQVEVSNRQIKEILEKTV-- 684
Query: 2196 YKDWHEMLPFALHGYRTSVRTSIGATPFSLVYGMEAVLPVEVEIPSLRVLMEVDLSEAEW 2255
+ +T +G TPF L+YG LPVE+E + + ++
Sbjct: 685 -----------------AFKTPLGTTPFHLLYGKACHLPVELEHKAAWTVKMLNFDIKSA 727
Query: 2256 VQNRYDQLNLIEEKRMAALCHGQLYQKRMKQAFDKKVRPREFKEGDLVLKKIFSFQP-DS 2314
+ R QLN ++E ++ A + +LY++R K DKK+ R F+ D KK +P
Sbjct: 728 GERRLIQLNELDEIQIHAYDNSKLYKERTKAYHDKKILTRTFEPKDQKKKKTRETKPFKG 787
Query: 2315 RGK 2317
RGK
Sbjct: 788 RGK 790
Score = 77.4 bits (189), Expect = 9e-14
Identities = 44/133 (33%), Positives = 76/133 (57%), Gaps = 4/133 (3%)
Query: 1635 SMGCVLGQQDETGRKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTW 1694
++G VLGQ+ + +K HAIYY S+ + + Y+ EK A+ +A ++ R Y++
Sbjct: 251 AVGAVLGQRKD--KKLHAIYYASRTLDDAKRNYATTEKEFLAVVFAFEKFRSYLVGLKVI 308
Query: 1695 LISKMDPIKYIFEKPALIGRIARWQMLLSEYDIEYRSQKAIKGSILADHLAHQPLEDYRP 1754
+ + +KY+ + R+ RW +LL E+DIE R +K ++ +ADHL+ ++D P
Sbjct: 309 VHTDHAALKYLMQNKDAKPRLLRWILLLQEFDIEVRDKKGVE-KCVADHLSRIRIDDDVP 367
Query: 1755 IKFDFPDEEIMYL 1767
I DF EE +Y+
Sbjct: 368 IN-DFLPEENIYM 379
>At2g13330 F14O4.9
Length = 889
Score = 128 bits (322), Expect = 3e-29
Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 27/252 (10%)
Query: 1660 FTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLISKMDPIKYIFEKPALIGRIARWQ 1719
+T + R +EK + + ++LR Y +H ++ PI+ I GR+A+W
Sbjct: 543 YTNRDKRCPAMEKLALTVVMSVRKLRLYFQSHPI-VVMTSQPIRTILHSLTQSGRLAKWA 601
Query: 1720 MLLSEYDIEYRSQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGE 1779
+ L EYDIEYR++ ++K +LAD + PL D +
Sbjct: 602 IELREYDIEYRTRTSLKAQVLADFVIKLPLADL--------------------------D 635
Query: 1780 GPDPDSVWGLIFDGAVNVYGNGIGAVLLTPKGTHIPFTARLRFDCTNNIAEYEACIMGIE 1839
G + + W L DG+ N G+G+G L +P G I + +L F+ +NN +EYEA I GI+
Sbjct: 636 GTNSNKKWLLHVDGSSNRQGSGVGIQLTSPTGEVIEQSLQLGFNASNNESEYEALIAGIK 695
Query: 1840 EAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHHIPRDE 1899
A + I+ I Y DS LV +Q G++E + Y + + L F +L IPR E
Sbjct: 696 LAQEKGIREIHAYSDSQLVTSQFHGEYEAKDERMEAYLELVKTLAQQFESFKLTRIPRGE 755
Query: 1900 NQMADALATLSS 1911
N AD LA L+S
Sbjct: 756 NTSADTLAALAS 767
Score = 76.3 bits (186), Expect = 2e-13
Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 2/145 (1%)
Query: 842 NNLSFSDEELPAEGRNHNRALHISVNCKTDALSKVLVDTGSSLNVLSKTTYTQLTYQDAP 901
+ ++F + E+ + H+ AL I ++ LS ++VDTGSS++VL + + + D+
Sbjct: 45 DGITFWESEITDLDKPHDDALVIRIDVGNYELSCIMVDTGSSVDVLFYDAFKRTGHLDSK 104
Query: 902 LRRSGVMVKAFDGSRKDVLGEVVLPITVGPQVFQV-NFQVMDIQASYSCLLGRPWIHEAG 960
L+ + F G +G + LP T+ V Q+ NF V+D +A ++ +LGRPW+H
Sbjct: 105 LQGRKTPLTGFAGDTTFSIGTIQLP-TIARGVRQLTNFLVVDKKAPFNAILGRPWLHVMK 163
Query: 961 AVTSTLHQKLKFVKNGKLVTVNGEE 985
AV ST HQ +KF + V G +
Sbjct: 164 AVPSTYHQCIKFPSYKGIAVVYGSQ 188
>At2g07410 putative retroelement pol polyprotein
Length = 411
Score = 119 bits (297), Expect = 3e-26
Identities = 88/276 (31%), Positives = 135/276 (48%), Gaps = 44/276 (15%)
Query: 2091 ASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNN 2150
+S G+++ILVA+DY +KWVEA +VV+K K I R+G+ +I+D + N
Sbjct: 6 SSYGNKYILVAVDYVSKWVEAIVSPTNDAKVVLKLFKTIIFTRFGVHMVVISDGRKHFIN 65
Query: 2151 KMMKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMV-VTYKDWHEMLPFALHG 2209
K + L ++H ++ Y PQ +G VE +N+ IK I++K V VT KD L AL
Sbjct: 66 KAFENLLKKHGVKHKVATSYHPQTSGQVEISNREIKAILEKTVGVTRKDLSAKLDDALWA 125
Query: 2210 YRTSVRTS----IGATPFSLVYGMEAVLPVEVEIPSLRV--LMEVDLSEAEWVQNRYDQL 2263
Y+T+ +T+ IG TPF+L+Y LP+E+E ++ LM D+ AE + R QL
Sbjct: 126 YKTAFKTAFKTPIGTTPFNLLYAKSGHLPIELEFKAMWAVKLMNFDIKTAE--EERLIQL 183
Query: 2264 NLIEEKRMAALCHGQLYQKRMKQAFDKKVRPREFKEGDLVLKKIFSFQPDSRGKWAPNYE 2323
N ++E R+ A Y+ +K++ R F
Sbjct: 184 NDLDEIRLEA------YESSKNYKGKRKLKSRLF-------------------------- 211
Query: 2324 GPYVVKKAFSGGAMTLQTMDGEELPRPVNTDTVKKY 2359
GP+ V + GA+TL G+ VN +KKY
Sbjct: 212 GPFCVTEIRPYGAVTLAVKSGD---FTVNGQRLKKY 244
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 107 bits (267), Expect = 8e-23
Identities = 100/403 (24%), Positives = 171/403 (41%), Gaps = 38/403 (9%)
Query: 1938 AEVVFDDKPWFHDIKVFLQTREYPPGASNKDKKTLRRLSSN--FFLNGDILYKRNFDTVL 1995
A VVF K W + Q R+ + KT + S+N +NG +
Sbjct: 494 AAVVFALKIWRSYLIRLAQERDEEIKGWTLNNKTEYQTSNNGTIVVNGRV---------- 543
Query: 1996 LRCV--DKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKC 2053
CV D+ + ++ E H+ F IHP + M + + R Y+W+ M D + KC C
Sbjct: 544 --CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMRKDVARWVAKCPTC 600
Query: 2054 QIYADKIHMPPTTL-NLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVE-- 2110
Q+ + +P L NL S W + +D + R+ + H + V +D TK
Sbjct: 601 QLVKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSAHFM 660
Query: 2111 AASYANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPY 2170
A S + + + K+I + I+ +GIP I++D T +K + S+ Y
Sbjct: 661 AISDKDGAEIIAEKYI-DEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAY 719
Query: 2171 RPQMNGAVEAANKNIKRIVQKMVVTYK-DWHEMLPFALHGYRTSVRTSIGATPFSLVYGM 2229
PQ +G E + ++ +++ V+ + +W + L Y S + SIG +P+ +YG
Sbjct: 720 HPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGR 779
Query: 2230 EAVLPVEVEIPSLRVLMEVDLSEAEWVQNRYDQLNLIEEKRMAALCHGQLYQKRMKQAFD 2289
P+ R L + + + ++ ++ L E Q R K +
Sbjct: 780 ACRTPLCWTPVGERRLFGPTIVDETTERMKFLKIKLKEA------------QDRQKSYAN 827
Query: 2290 KKVRPREFKEGDLVLKKIFSFQP----DSRGKWAPNYEGPYVV 2328
K+ + EF+ GDLV K +++ SR K +P Y GPY V
Sbjct: 828 KRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKV 870
>At4g04060 putative transposon protein
Length = 375
Score = 102 bits (255), Expect = 2e-21
Identities = 54/148 (36%), Positives = 84/148 (56%), Gaps = 18/148 (12%)
Query: 2022 GHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTLNLLSSPWPFSMWGI 2081
G M + ++ GY+W TM ++C H+ +C KCQ +A +H P ++ +SSP+PF W +
Sbjct: 186 GRLMKRSVV--GYFWPTMLANCIAHSLRCDKCQRHAPTLHQLPKEMSSISSPYPFMKWSM 243
Query: 2082 DMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGIPNRII 2141
D++G +E AS G + + + VT++ V F+ +I+CR+GIP II
Sbjct: 244 DVVGPME--ASGGKKKLKNLL--------------VTEKQVEDFLWENIVCRHGIPYEII 287
Query: 2142 TDNGTNLNNKMMKELCDDFKIEHHNSSP 2169
TDNGTNL + +K CD KI S+P
Sbjct: 288 TDNGTNLTSGKIKAFCDKCKIRLTISTP 315
Score = 47.4 bits (111), Expect = 1e-04
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 1846 IKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHHIPRDENQMADA 1905
I++I + DS LVI+Q G++E + Y + + L F EL IPR EN ADA
Sbjct: 3 IRDIHAHSDSQLVISQFHGEYEAKDERMEAYLELVKTLTQQFESFELTMIPRGENTSADA 62
Query: 1906 LATLS 1910
LA L+
Sbjct: 63 LAALA 67
>At2g10780 pseudogene
Length = 1611
Score = 102 bits (254), Expect = 3e-21
Identities = 82/337 (24%), Positives = 147/337 (43%), Gaps = 22/337 (6%)
Query: 2000 DKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADK 2059
D+ + ++ E H+ F IHP + M + + R Y+W+ M+ D + KC CQ+ +
Sbjct: 1156 DRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMKKDVARWVAKCPTCQLVKAE 1214
Query: 2060 IHMPPTTLNLLSSP-WPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVE--AASYAN 2116
+P L L P W + +D + + + H + V +D TK A S +
Sbjct: 1215 HQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKD 1274
Query: 2117 VTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHNSSPYRPQMNG 2176
+ + K+I + I+ +GIP I++D T +K K + S+ Y PQ +
Sbjct: 1275 GAEIIAEKYI-DEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDE 1333
Query: 2177 AVEAANKNIKRIVQKMVVTY-KDWHEMLPFALHGYRTSVRTSIGATPFSLVYGMEAVLPV 2235
E + ++ +++ V+ + +W + L Y S + SIG +P+ +YG P+
Sbjct: 1334 QSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPL 1393
Query: 2236 EVEIPSLRVLMEVDLSEAEWVQNRYDQLNLIEEKRMAALCHGQLYQKRMKQAFDKKVRPR 2295
R L + + + ++ ++ L E Q R K +K+ +
Sbjct: 1394 CWTPVGERRLFGPTIVDETTERMKFLKIKLKEA------------QDRQKSYANKRRKEL 1441
Query: 2296 EFKEGDLVLKKIFSFQP----DSRGKWAPNYEGPYVV 2328
EF+ GDLV K +++ SR K +P Y GPY V
Sbjct: 1442 EFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKV 1478
Score = 43.9 bits (102), Expect = 0.001
Identities = 31/101 (30%), Positives = 46/101 (44%), Gaps = 8/101 (7%)
Query: 1636 MGCVLGQQDETGRKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWL 1695
+GCVL Q K I Y S++ + E Y + A+ + K R Y+ +
Sbjct: 966 LGCVLMQ------KGSVIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLYGAKVQI 1019
Query: 1696 ISKMDPIKYIFEKPALIGRIARWQMLLSEY--DIEYRSQKA 1734
+ +KYIF +P L R RW L+++Y DI Y KA
Sbjct: 1020 YTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGKA 1060
Score = 38.9 bits (89), Expect = 0.036
Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 23/186 (12%)
Query: 198 YKGSSCPEEHLKMYVRRMPAYAQDDQILIYYFQESLTGPASKWYTNLDKTR---VQTFRD 254
+K + CPE++ + I +++ L G A W+ ++K R V++F D
Sbjct: 202 FKSTRCPEDYQR-------------DIAVHF----LEGDAHNWWLTVEKRRGDEVRSFAD 244
Query: 255 LCEAFVEQYSYNVDMTPDRSDLQAMTQGDKETFKEYAQRWRDTAAQVSPRIEEKE-MTKL 313
+ F ++Y + QG++ T +EY + + V +EE++ +
Sbjct: 245 FEDEFNKKYFPPEAWDRLECAYLDLVQGNR-TVREYDEEFNRLRRYVGRELEEEQAQLRR 303
Query: 314 FLKTLNHFYYKKMVGSTPKSFAEMVGMGVQLEEGVREGR-LVKNATPANGTKKTGNHFPR 372
F++ L + T S +E+V +EEG+ E R L + P + T +
Sbjct: 304 FIRGLRIEIRNHCLVRTFNSVSELVERAAMIEEGIEEERYLNREKAPIRNNQSTKPADKK 363
Query: 373 KKEQEV 378
+K +V
Sbjct: 364 RKFDKV 369
>At4g07610
Length = 276
Score = 93.2 bits (230), Expect = 2e-18
Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 2/168 (1%)
Query: 1997 RCVDKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIY 2056
R V + E + ++ H ++G + KIL+AG++W TM + + KC C
Sbjct: 74 RYVSEDEVEGILLHCHCSTYGGNFTTFKTVSKILQAGFWWPTMFKEAQEFVLKCDSCHRK 133
Query: 2057 ADKIHMPPTTLNLLSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYAN 2116
+ N + F +WGID IG +S G+++ILVA+DY +KW+EA +
Sbjct: 134 GNISKRNEMPQNPILEVELFDVWGIDFIGPFP--SSYGNKYILVAVDYVSKWIEATASPT 191
Query: 2117 VTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEH 2164
+VV+K K I R+G+P +I+D G + NK+ + L ++H
Sbjct: 192 NDAKVVLKLFKTIIFSRFGVPRVVISDGGKHFINKVFENLLKKHGVKH 239
>At4g32220 hypothetical protein
Length = 452
Score = 92.8 bits (229), Expect = 2e-18
Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 29/187 (15%)
Query: 1681 AKRLRHYMINHTTWLISKMDPIKYIFEKPALIGRIARWQMLLSEYDIEYRSQKAIKGSIL 1740
A++LR Y +H+ ++ P++ + P RIA+W + LSEYD+EYRS+ ++K +L
Sbjct: 132 ARKLRPYFQSHS--IVFTDQPLRTVLHSPNQSRRIAKWAIELSEYDVEYRSRPSLKSQVL 189
Query: 1741 ADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSVWGLIFDGAVNVYGN 1800
AD + + P D PD W L DG+ ++ G+
Sbjct: 190 ADFMT-----ELSPDVIDV----------------------IPDENWILYSDGSSSLQGS 222
Query: 1801 GIGAVLLTPKGTHIPFTARLRFDCTNNIAEYEACIMGIEEAIDLRIKNIEIYGDSALVIN 1860
+G +L +P + + RL+F +NN AEYEA + G+ A L K I+ + DS LV++
Sbjct: 223 SLGILLQSPTREILEQSLRLQFKASNNEAEYEALLAGLRLAKGLGAKQIKAFSDSQLVVS 282
Query: 1861 QIKGKWE 1867
+ G++E
Sbjct: 283 RFSGEFE 289
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.327 0.140 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,887,367
Number of Sequences: 26719
Number of extensions: 2372321
Number of successful extensions: 11445
Number of sequences better than 10.0: 272
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 9414
Number of HSP's gapped (non-prelim): 1103
length of query: 2360
length of database: 11,318,596
effective HSP length: 116
effective length of query: 2244
effective length of database: 8,219,192
effective search space: 18443866848
effective search space used: 18443866848
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146971.7