BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146910.6 - phase: 0 
         (385 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g10990 putative retrotransposon polyprotein                        411  e-115
At2g20460 putative retroelement pol polyprotein                       408  e-114
At4g17450 retrotransposon like protein                                405  e-113
At2g16000 putative retroelement pol polyprotein                       402  e-112
At1g70010 hypothetical protein                                        400  e-112
At2g15870 putative retroelement pol polyprotein                       392  e-109
At1g47650 hypothetical protein                                        367  e-102
At2g23330 putative retroelement pol polyprotein                       361  e-100
At4g23160 putative protein                                            357  6e-99
At4g14460 retrovirus-related like polyprotein                         353  7e-98
At2g13940 putative retroelement pol polyprotein                       353  9e-98
At4g22040 LTR retrotransposon like protein                            350  6e-97
At1g57640                                                             350  6e-97
At2g16670 putative retroelement pol polyprotein                       345  2e-95
At1g26990 polyprotein, putative                                       340  1e-93
At2g15920 putative retroelement pol polyprotein                       337  7e-93
At2g24660 putative retroelement pol polyprotein                       324  6e-89
At4g19780 putative LTR retrotransposon (fragment)                     323  1e-88
At2g06840 putative retroelement pol polyprotein                       320  8e-88
At1g59265 polyprotein, putative                                       317  5e-87

>At4g10990 putative retrotransposon polyprotein
          Length = 1203

 Score =  411 bits (1057), Expect = e-115
 Identities = 198/372 (53%), Positives = 270/372 (72%), Gaps = 5/372 (1%)

Query: 1    MKIPQGLE-----GIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
            M +PQG        +P   VC+L KSLYGLKQASR+WY++LS   + A +    +D T+F
Sbjct: 649  MSLPQGYTPPTGISLPSKPVCRLLKSLYGLKQASRQWYKRLSSVFLGANFIQSPADNTMF 708

Query: 56   IKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAK 115
            +K + ++I V+LVYVDD+++A ND   ++ +K  L + F IKDLG  +FFLGLE+A S++
Sbjct: 709  VKVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIKDLGPARFFLGLEIARSSE 768

Query: 116  GITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLT 175
            GI++CQ++Y  +LL   G  GCKPSSIPMDP+  L ++      +A+ YR LVG+LLYL 
Sbjct: 769  GISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNATSYRELVGRLLYLC 828

Query: 176  STRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDAD 235
             TRPDI+F V  L QFL +PT  H +AAHKVLRYLK +PG GL +   S L L G+SDAD
Sbjct: 829  ITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQGLMYSASSELCLNGFSDAD 888

Query: 236  WGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLT 295
            WG C D+RRS+TG+C ++G SL++WKSKKQ  VSRSS+E+EYR+LA ATCE+ WL  LL 
Sbjct: 889  WGTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEYRSLAQATCEIIWLQQLLK 948

Query: 296  DLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQE 355
            DL+VT +    L CD++SALH+A+NPVFHERTKH++IDCH VR+++++G ++   + +  
Sbjct: 949  DLHVTMTCPAKLFCDNKSALHLATNPVFHERTKHIEIDCHTVRDQIKAGKLKTLHVPTGN 1008

Query: 356  QIADILTKALHP 367
            Q+ADILTK LHP
Sbjct: 1009 QLADILTKPLHP 1020


>At2g20460 putative retroelement pol polyprotein
          Length = 1461

 Score =  408 bits (1048), Expect = e-114
 Identities = 205/388 (52%), Positives = 273/388 (69%), Gaps = 6/388 (1%)

Query: 1    MKIPQGLEGI-----PPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
            MK+P G   I     PP+ VC+L KS+YGLKQASR+W+ K S+ L++ G+     D TLF
Sbjct: 1071 MKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGFEKQHGDHTLF 1130

Query: 56   IKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAK 115
            ++   S   VLLVYVDDIV+A       Q +  +L   F +++LG LK+FLGLEVA +++
Sbjct: 1131 VRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLEVARTSE 1190

Query: 116  GITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLT 175
            GI++ Q++Y L+LL     L CKPSSIPM P+ RL ++D     D   YR LVGKL+YLT
Sbjct: 1191 GISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGKLMYLT 1250

Query: 176  STRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDAD 235
             TRPDI+F V +LCQF  +P   H  A +KVL+Y+K + G GLF+  +  L L GY+DAD
Sbjct: 1251 ITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSAEDDLTLKGYTDAD 1310

Query: 236  WGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLT 295
            WG CPD+RRS TG+  F+G SL+SW+SKKQ TVSRSS+EAEYRALA A+CE+ WL  LL 
Sbjct: 1311 WGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASCEMAWLSTLLL 1370

Query: 296  DLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQE 355
             L V  S VP L  DS +A++IA+NPVFHERTKH++IDCH VREKL +G ++L  + +++
Sbjct: 1371 ALRVH-SGVPILYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLDNGQLKLLHVKTKD 1429

Query: 356  QIADILTKALHPASFNHLIAKLSLLNIY 383
            Q+ADILTK L P  F HL++K+S+ NI+
Sbjct: 1430 QVADILTKPLFPYQFAHLLSKMSIQNIF 1457


>At4g17450 retrotransposon like protein
          Length = 1433

 Score =  405 bits (1042), Expect = e-113
 Identities = 197/390 (50%), Positives = 265/390 (67%), Gaps = 5/390 (1%)

Query: 1    MKIPQGL-----EGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
            MKIP G      E +PPH +C+L KS+YGLKQASR+WY KLS+ L   G+    +D TLF
Sbjct: 1041 MKIPPGYADLVGEALPPHAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLF 1100

Query: 56   IKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAK 115
            IK     +  +LVYVDDI++  N  D +      L + F ++DLG  K+FLG+E+A S K
Sbjct: 1101 IKYANGVLMGVLVYVDDIMIVSNSDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIARSEK 1160

Query: 116  GITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLT 175
            GI+ICQ++Y L+LL+ TG LG KPSSIP+DPS +L+++D  P  D++ YR LVGKL+YL 
Sbjct: 1161 GISICQRKYILELLSTTGFLGSKPSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKLMYLQ 1220

Query: 176  STRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDAD 235
             TRPDI++ V  LCQF  +PT+ H  A HKVLRYLK + G GLF+  D    L GY+D+D
Sbjct: 1221 ITRPDIAYAVNTLCQFSHAPTSVHLSAVHKVLRYLKGTVGQGLFYSADDKFDLRGYTDSD 1280

Query: 236  WGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLT 295
            +G C D+RR +  YC FIG  LVSWKSKKQ TVS S++EAE+RA++  T E+ WL  L  
Sbjct: 1281 FGSCTDSRRCVAAYCMFIGDYLVSWKSKKQDTVSMSTAEAEFRAMSQGTKEMIWLSRLFD 1340

Query: 296  DLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQE 355
            D  V       L CD+ +ALHI +N VFHERTK +++DC+  RE ++SG ++   + + E
Sbjct: 1341 DFKVPFIPPAYLYCDNTAALHIVNNSVFHERTKFVELDCYKTREAVESGFLKTMFVETGE 1400

Query: 356  QIADILTKALHPASFNHLIAKLSLLNIYQP 385
            Q+AD LTKA+HPA F+ LI K+ + NI+ P
Sbjct: 1401 QVADPLTKAIHPAQFHKLIGKMGVCNIFAP 1430


>At2g16000 putative retroelement pol polyprotein
          Length = 1454

 Score =  402 bits (1032), Expect = e-112
 Identities = 198/388 (51%), Positives = 270/388 (69%), Gaps = 6/388 (1%)

Query: 1    MKIPQGL---EGI--PPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
            MKIP+G    +GI  P + V +L +S+YGLKQASR+W++K S  L+S G+     D TLF
Sbjct: 1064 MKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLF 1123

Query: 56   IKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAK 115
            +K       ++LVYVDDIV+A         +   L   F ++DLG LK+FLGLEVA +  
Sbjct: 1124 LKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTA 1183

Query: 116  GITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLT 175
            GI+ICQ++Y L+LL  TG L CKP S+PM P+ ++ +DD +   D  +YR +VGKL+YLT
Sbjct: 1184 GISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLT 1243

Query: 176  STRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDAD 235
             TRPDI+F V +LCQF  +P  TH  AA++VL+Y+K + G GLF+   S L L G++D+D
Sbjct: 1244 ITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSD 1303

Query: 236  WGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLT 295
            W  C D+RRS T +  F+G SL+SW+SKKQ TVSRSS+EAEYRALA ATCE+ WL  LL 
Sbjct: 1304 WASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFTLLV 1363

Query: 296  DLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQE 355
             L  +   VP L  DS +A++IA+NPVFHERTKH+ +DCH VRE+L +G ++L  + +++
Sbjct: 1364 SLQAS-PPVPILYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVRTED 1422

Query: 356  QIADILTKALHPASFNHLIAKLSLLNIY 383
            Q+ADILTK L P  F HL +K+S+LNI+
Sbjct: 1423 QVADILTKPLFPYQFEHLKSKMSILNIF 1450


>At1g70010 hypothetical protein
          Length = 1315

 Score =  400 bits (1027), Expect = e-112
 Identities = 194/388 (50%), Positives = 270/388 (69%), Gaps = 5/388 (1%)

Query: 1    MKIPQGL-----EGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
            M++PQG      + +PP+ VC+L KSLYGLKQASR+WY K S  L+  G+     D T F
Sbjct: 925  MRLPQGYASRQGDSLPPNAVCRLKKSLYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCF 984

Query: 56   IKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAK 115
            +K +      +LVY+DDI++A N+   + ++K+ + + F ++DLG LK+FLGLE+  S K
Sbjct: 985  LKISDGIFLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDK 1044

Query: 116  GITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLT 175
            GI I Q++Y LDLL++TG LGCKPSSIPMDPS     D    +V+   YR L+G+L+YL 
Sbjct: 1045 GIHISQRKYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLN 1104

Query: 176  STRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDAD 235
             TRPDI+F V +L QF  +P   H +A +K+L+Y+K + G GLF+   S L L  Y++AD
Sbjct: 1105 ITRPDITFAVNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQGLFYSATSELQLKVYANAD 1164

Query: 236  WGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLT 295
            +  C D+RRS +GYC F+G SL+ WKS+KQ  VS+SS+EAEYR+L+ AT EL WL   L 
Sbjct: 1165 YNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYRSLSVATDELVWLTNFLK 1224

Query: 296  DLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQE 355
            +L V  SK   L CD+++A+HIA+N VFHERTKH++ DCH VRE+L  GL EL+ I+++ 
Sbjct: 1225 ELQVPLSKPTLLFCDNEAAIHIANNHVFHERTKHIESDCHSVRERLLKGLFELYHINTEL 1284

Query: 356  QIADILTKALHPASFNHLIAKLSLLNIY 383
            QIAD  TK L+P+ F+ LI+K+ LLNI+
Sbjct: 1285 QIADPFTKPLYPSHFHRLISKMGLLNIF 1312


>At2g15870 putative retroelement pol polyprotein
          Length = 1264

 Score =  392 bits (1006), Expect = e-109
 Identities = 194/389 (49%), Positives = 269/389 (68%), Gaps = 6/389 (1%)

Query: 1    MKIPQGL---EGI--PPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
            MK+P+G    +GI  P + VC+L +S+YGLKQASR+W++K S  L+S  +     D TLF
Sbjct: 874  MKLPEGYAERKGIILPSNVVCRLKRSIYGLKQASRQWFKKFSASLLSLRFFKTHGDHTLF 933

Query: 56   IKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAK 115
            +K       V+LVYVDDIV+A  +      +   L N+F ++DLG LK+FLGLE+  +  
Sbjct: 934  LKDCGGEYVVVLVYVDDIVIASTNEAAAVQLSQDLQNLFKLRDLGDLKYFLGLEITRTEA 993

Query: 116  GITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLT 175
            GI++CQ++Y L+LL  TG + CK  S+PM P+ +L + D E   D  +YR +VG L+YLT
Sbjct: 994  GISLCQRKYALELLASTGMINCKLVSVPMVPNLKLMKVDGELLEDREQYRRIVGTLMYLT 1053

Query: 176  STRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDAD 235
             TRPDI+F V +LCQF  +PT  H +AAH+VL+Y+K + G GLF+   S L L G++D+D
Sbjct: 1054 ITRPDITFAVNKLCQFSYAPTTAHLQAAHRVLQYIKGTVGQGLFYSASSDLTLKGFADSD 1113

Query: 236  WGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLT 295
            W  CPD+R S TG+  F+G SL+S +SKKQ  VSRSS+EAEYRALA ATCEL WL  LL 
Sbjct: 1114 WASCPDSRHSTTGFTMFVGDSLISLRSKKQHVVSRSSAEAEYRALALATCELVWLHTLLA 1173

Query: 296  DLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQE 355
             L    + +P L  DS +A++IA NPVFHERTKH++IDCH VREK+  G ++L  + +++
Sbjct: 1174 SL-TAATTIPILFSDSTAAIYIAINPVFHERTKHIEIDCHTVREKIDDGELKLLHVRTED 1232

Query: 356  QIADILTKALHPASFNHLIAKLSLLNIYQ 384
            Q+ADI+TK L P  F HL +K+S+LNI++
Sbjct: 1233 QVADIMTKPLFPNQFEHLKSKMSILNIFE 1261


>At1g47650 hypothetical protein
          Length = 1409

 Score =  367 bits (941), Expect = e-102
 Identities = 177/361 (49%), Positives = 247/361 (68%), Gaps = 6/361 (1%)

Query: 1    MKIPQGLEG-----IPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
            MK+P+G        +PP+ VC+L +S+YGLKQASR+W++K S  L+  G+     D TLF
Sbjct: 855  MKLPEGYAARKGITLPPNSVCRLKRSIYGLKQASRQWFKKFSASLLDLGFKKTHGDHTLF 914

Query: 56   IKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAK 115
            IK       ++LVYVDDI +A         +   L   F ++DLG LK+FLGLE+A +  
Sbjct: 915  IKEYDGEFVIVLVYVDDIAIASTSEGAAIQLTQDLQQRFKLRDLGDLKYFLGLEIARTEA 974

Query: 116  GITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLT 175
            GI+ICQ++Y L+LL  TG + CKP S+PM P+ ++ + D +   D  +YR +VGKL+YLT
Sbjct: 975  GISICQRKYALELLASTGMVNCKPVSVPMIPNVKMMKTDGDLLDDREQYRRIVGKLMYLT 1034

Query: 176  STRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDAD 235
             TR DI+F V +LCQF  +P  +H +AA++VL+Y+K S G GLF+   + L L G++D+D
Sbjct: 1035 ITRLDITFAVNKLCQFSSAPRTSHLQAAYRVLQYIKGSVGQGLFYSASADLTLKGFADSD 1094

Query: 236  WGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLT 295
            W  CPD+RRS TG+  F+G SL+SW+SKKQ  VSRSS+EAEYRALA  TCEL WL  LL 
Sbjct: 1095 WASCPDSRRSTTGFSMFVGDSLISWRSKKQHVVSRSSAEAEYRALALVTCELVWLHTLLM 1154

Query: 296  DLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQE 355
             L  +   VP L  DS +A++IA+NPVFHERTKH+++DCH VREKL +G ++L  + +++
Sbjct: 1155 SLKAS-YLVPVLYSDSTTAIYIATNPVFHERTKHIELDCHTVREKLDNGELKLLHVRTED 1213

Query: 356  Q 356
            Q
Sbjct: 1214 Q 1214


>At2g23330 putative retroelement pol polyprotein
          Length = 1496

 Score =  361 bits (927), Expect = e-100
 Identities = 180/379 (47%), Positives = 255/379 (66%)

Query: 1    MKIPQGLEGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTT 60
            M++P G +   P KVC+L KSLYGLKQA R W+ KLS  L + G+     D +LF  +  
Sbjct: 1111 MRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYSLFSLKNG 1170

Query: 61   STITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITIC 120
             TI  +LVYVDD+++AGN+LD I   K+ LH  F +KDLG LK+FLGLEV+    G  + 
Sbjct: 1171 DTIIHVLVYVDDLIVAGNNLDAIDRFKSQLHKCFHMKDLGKLKYFLGLEVSRGPDGFCLS 1230

Query: 121  QQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPD 180
            Q++Y LD++ +TG LGCKPS++P+  + +L       + +  +YR LVG+ +YLT TRPD
Sbjct: 1231 QRKYALDIVKETGLLGCKPSAVPIALNHKLASITGPVFTNPEQYRRLVGRFIYLTITRPD 1290

Query: 181  ISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCP 240
            +S+ V  L QF+ +P   H++AA +++RYLK SP  G+F   DSSL +  Y D+D+  CP
Sbjct: 1291 LSYAVHILSQFMQAPLVAHWEAALRLVRYLKGSPAQGIFLRSDSSLIINAYCDSDYNACP 1350

Query: 241  DTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVT 300
             TRRS++ Y  ++G S +SWK+KKQ TVS SS+EAEYRA+A    EL+WL  LL DL V 
Sbjct: 1351 LTRRSLSAYVVYLGDSPISWKTKKQDTVSYSSAEAEYRAMAYTLKELKWLKALLKDLGVH 1410

Query: 301  CSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADI 360
             S    L CDS++A+HIA+NPVFHERTKH++ DCH VR+ +   L+    I +++Q+AD+
Sbjct: 1411 HSSPMKLHCDSEAAIHIAANPVFHERTKHIESDCHKVRDAVLDKLITTEHIYTEDQVADL 1470

Query: 361  LTKALHPASFNHLIAKLSL 379
            LTK+L   +F  L++ L +
Sbjct: 1471 LTKSLPRPTFERLLSTLGV 1489


>At4g23160 putative protein
          Length = 1240

 Score =  357 bits (916), Expect = 6e-99
 Identities = 176/345 (51%), Positives = 234/345 (67%), Gaps = 5/345 (1%)

Query: 1   MKIPQGL-----EGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
           MK+P G      + +PP+ VC L KS+YGLKQASR+W+ K S  LI  G+    SD T F
Sbjct: 210 MKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYF 269

Query: 56  IKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAK 115
           +K T +    +LVYVDDI++  N+   +  +K+ L + F ++DLG LK+FLGLE+A SA 
Sbjct: 270 LKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAA 329

Query: 116 GITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLT 175
           GI ICQ++Y LDLL++TG LGCKPSS+PMDPS          +VDA  YR L+G+L+YL 
Sbjct: 330 GINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQ 389

Query: 176 STRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDAD 235
            TR DISF V +L QF ++P   H +A  K+L Y+K + G GLF+   + + L  +SDA 
Sbjct: 390 ITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDAS 449

Query: 236 WGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLT 295
           +  C DTRRS  GYC F+G SL+SWKSKKQQ VS+SS+EAEYRAL+ AT E+ WL     
Sbjct: 450 FQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFR 509

Query: 296 DLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREK 340
           +L +  SK   L CD+ +A+HIA+N VFHERTKH++ DCH VRE+
Sbjct: 510 ELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRER 554


>At4g14460 retrovirus-related like polyprotein
          Length = 1489

 Score =  353 bits (907), Expect = 7e-98
 Identities = 180/390 (46%), Positives = 248/390 (63%), Gaps = 58/390 (14%)

Query: 1    MKIPQGLEG-----IPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
            M +PQG        +PP+ VC+L KS+YGLKQASR+WY++                    
Sbjct: 1147 MSLPQGYTPPAGTILPPNPVCRLLKSIYGLKQASRQWYKR-------------------- 1186

Query: 56   IKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAK 115
                       LVY+DDI++A N+  E++ +K  L + F IKDLG  +FFLGL       
Sbjct: 1187 -------FVAALVYIDDIMIASNNDAEVENLKALLRSEFKIKDLGPARFFLGL------- 1232

Query: 116  GITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLT 175
                               LGCKPSSIPMDP+  L RD   P  + + YR L+G+LLYLT
Sbjct: 1233 -------------------LGCKPSSIPMDPTLHLVRDMGTPLPNPTAYRKLIGRLLYLT 1273

Query: 176  STRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDAD 235
             TRPDI++ V QL QF+ +P+  H +AAHKVLRY+K +PG GL +  D  + L G+SDAD
Sbjct: 1274 ITRPDITYAVHQLSQFISAPSDIHLQAAHKVLRYIKANPGQGLMYSADYEICLNGFSDAD 1333

Query: 236  WGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLT 295
            W  C DTRRSI+G+C ++G SL+SWKSKKQ   SRSS+E+EYR++A ATCE+ WL  LL 
Sbjct: 1334 WAACKDTRRSISGFCIYLGTSLISWKSKKQAVASRSSTESEYRSMAQATCEIIWLQQLLK 1393

Query: 296  DLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQE 355
            DL++  +    L CD++SALH + NPVFHERTKH++IDCH VR+++++G ++   + ++ 
Sbjct: 1394 DLHIPLTCPAKLFCDNKSALHSSLNPVFHERTKHIEIDCHTVRDQIKAGNLKALHVPTEN 1453

Query: 356  QIADILTKALHPASFNHLIAKLSLLNIYQP 385
            Q ADILTKALHP  F+HL+ ++SL +++ P
Sbjct: 1454 QHADILTKALHPGPFHHLLRQMSLSSLFLP 1483


>At2g13940 putative retroelement pol polyprotein
          Length = 1501

 Score =  353 bits (906), Expect = 9e-98
 Identities = 177/385 (45%), Positives = 251/385 (64%)

Query: 1    MKIPQGLEGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTT 60
            MK+P G     P KVC+L KSLYGLKQA R W++KLS  L+  G+     D +LF     
Sbjct: 1116 MKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDSLLRFGFVQSYEDYSLFSYTRN 1175

Query: 61   STITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITIC 120
            +    +L+YVDD+++ GND   +Q  K+ L   F +KDLG LK+FLG+EV+   +GI + 
Sbjct: 1176 NIELRVLIYVDDLLICGNDGYMLQKFKDYLSRCFSMKDLGKLKYFLGIEVSRGPEGIFLS 1235

Query: 121  QQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPD 180
            Q++Y LD++  +G LG +P+  P++ +  L  DD     D   YR LVG+LLYL  TRP+
Sbjct: 1236 QRKYALDVIADSGNLGSRPAHTPLEQNHHLASDDGPLLSDPKPYRRLVGRLLYLLHTRPE 1295

Query: 181  ISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCP 240
            +S++V  L QF+ +P   HF AA +V+RYLK SPG G+    D  L L  Y D+DW  CP
Sbjct: 1296 LSYSVHVLAQFMQNPREAHFDAALRVVRYLKGSPGQGILLNADPDLTLEVYCDSDWQSCP 1355

Query: 241  DTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVT 300
             TRRSI+ Y   +G S +SWK+KKQ TVS SS+EAEYRA++ A  E++WL  LL +L + 
Sbjct: 1356 LTRRSISAYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAMSYALKEIKWLRKLLKELGIE 1415

Query: 301  CSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADI 360
             S    L CDS++A+HIA+NPVFHERTKH++ DCH VR+ ++ G++    + + EQ+AD+
Sbjct: 1416 QSTPARLYCDSKAAIHIAANPVFHERTKHIESDCHSVRDAVRDGIITTQHVRTTEQLADV 1475

Query: 361  LTKALHPASFNHLIAKLSLLNIYQP 385
             TKAL    F +L++KL + N++ P
Sbjct: 1476 FTKALGRNQFLYLMSKLGVQNLHTP 1500


>At4g22040 LTR retrotransposon like protein
          Length = 1109

 Score =  350 bits (899), Expect = 6e-97
 Identities = 170/385 (44%), Positives = 258/385 (66%)

Query: 1    MKIPQGLEGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTT 60
            MK+PQG +   P KVC+L KSLYGLKQA R W+ KLS  L   G+    SD +LF     
Sbjct: 724  MKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNND 783

Query: 61   STITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITIC 120
                 +LVYVDD++++G+  D +   K+ L + F +KDLG+LK+FLG+EV+ +A+G  + 
Sbjct: 784  GVFVHVLVYVDDLIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLS 843

Query: 121  QQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPD 180
            Q++Y LD++++ G LG +PS+ P++ + +L    S    D+S YR LVG+L+YL  TRP+
Sbjct: 844  QRKYVLDIISEMGLLGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTRPE 903

Query: 181  ISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCP 240
            +S++V  L QF+ +P   H+ AA +V+RYLK++PG G+     S+L + G+ D+D+  CP
Sbjct: 904  LSYSVHTLAQFMQNPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACP 963

Query: 241  DTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVT 300
             TRRS+TGY   +G + +SWK+KKQ T+SRSS+EAEYRA+A  T EL WL  +L DL V+
Sbjct: 964  LTRRSLTGYFVQLGDTPISWKTKKQPTISRSSAEAEYRAMAFLTQELMWLKRVLYDLGVS 1023

Query: 301  CSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADI 360
              +   +  DS+SA+ ++ NPV HERTKH+++DCH +R+ +  G++    + S +Q+ADI
Sbjct: 1024 HVQAMRIFSDSKSAIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADI 1083

Query: 361  LTKALHPASFNHLIAKLSLLNIYQP 385
            LTKAL      + + KL +L+++ P
Sbjct: 1084 LTKALGEKEVRYFLRKLGILDVHAP 1108


>At1g57640
          Length = 1444

 Score =  350 bits (899), Expect = 6e-97
 Identities = 171/385 (44%), Positives = 258/385 (66%)

Query: 1    MKIPQGLEGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTT 60
            MK+PQG +   P KVC+L KSLYGLKQA R W+ KLS  L   G+    SD +LF     
Sbjct: 1059 MKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQYGFTQSLSDYSLFSYNND 1118

Query: 61   STITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITIC 120
                 +LVYVDD++++G+  D +   K+ L + F +KDLG+LK+FLG+EV+ +A+G  + 
Sbjct: 1119 GIFVHVLVYVDDLIISGSCPDAVAQFKSYLESCFHMKDLGLLKYFLGIEVSRNAQGFYLS 1178

Query: 121  QQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPD 180
            Q++Y LD++++ G LG +PS+ P++ + +L    S    D+S YR LVG+L+YL  TRP+
Sbjct: 1179 QRKYVLDIISEMGLLGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLVVTRPE 1238

Query: 181  ISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCP 240
            +S++V  L QF+ +P   H+ AA +V+RYLK++PG G+     S+L + G+ D+D+  CP
Sbjct: 1239 LSYSVHTLAQFMQNPRQDHWNAAIRVVRYLKSNPGQGILLSSTSTLQINGWCDSDYAACP 1298

Query: 241  DTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVT 300
             TRRS+TGY   +G + +SWK+KKQ TVSRSS+EAEYRA+A  T EL WL  +L DL V+
Sbjct: 1299 LTRRSLTGYFVQLGDTPISWKTKKQPTVSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVS 1358

Query: 301  CSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADI 360
              +   +  DS+SA+ ++ NPV HERTKH+++DCH +R+ +  G++    + S +Q+ADI
Sbjct: 1359 HVQAMRIFSDSKSAIALSVNPVQHERTKHVEVDCHFIRDAILDGIIATSFVPSHKQLADI 1418

Query: 361  LTKALHPASFNHLIAKLSLLNIYQP 385
            LTKAL      + + KL +L+++ P
Sbjct: 1419 LTKALGEKEVRYFLRKLGILDVHAP 1443


>At2g16670 putative retroelement pol polyprotein
          Length = 1333

 Score =  345 bits (885), Expect = 2e-95
 Identities = 175/385 (45%), Positives = 246/385 (63%)

Query: 1    MKIPQGLEGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTT 60
            MK+P G E   P+KVC+L K+LYGLKQA R W+EKL+  L   G+    +D +LF     
Sbjct: 948  MKLPPGFEASHPNKVCRLRKALYGLKQAPRCWFEKLTTALKRYGFQQSLADYSLFTLVKG 1007

Query: 61   STITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITIC 120
            S    +L+YVDD+++ GN     Q  K  L + F +KDLG LK+FLG+EVA S  GI IC
Sbjct: 1008 SVRIKILIYVDDLIITGNSQRATQQFKEYLASCFHMKDLGPLKYFLGIEVARSTTGIYIC 1067

Query: 121  QQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPD 180
            Q++Y LD++++TG LG KP++ P++ + +L    S    D   YR LVG+L+YL  TR D
Sbjct: 1068 QRKYALDIISETGLLGVKPANFPLEQNHKLGLSTSPLLTDPQRYRRLVGRLIYLAVTRLD 1127

Query: 181  ISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCP 240
            ++F+V  L +F+  P   H+ AA +V+RYLK  PG G+F  R     + G+ D+DW G P
Sbjct: 1128 LAFSVHILARFMQEPREDHWAAALRVVRYLKADPGQGVFLRRSGDFQITGWCDSDWAGDP 1187

Query: 241  DTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVT 300
             +RRS+TGY    G S +SWK+KKQ TVS+SS+EAEYRA++    EL WL  LL  L V+
Sbjct: 1188 MSRRSVTGYFVQFGDSPISWKTKKQDTVSKSSAEAEYRAMSFLASELLWLKQLLFSLGVS 1247

Query: 301  CSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADI 360
              +   + CDS+SA++IA+NPVFHERTKH++ID H VR++   G++    + +  Q+ADI
Sbjct: 1248 HVQPMIMCCDSKSAIYIATNPVFHERTKHIEIDYHFVRDEFVKGVITPRHVGTTSQLADI 1307

Query: 361  LTKALHPASFNHLIAKLSLLNIYQP 385
             TK L    F+    KL + N+Y P
Sbjct: 1308 FTKPLGRDCFSAFRIKLGIRNLYAP 1332


>At1g26990 polyprotein, putative
          Length = 1436

 Score =  340 bits (871), Expect = 1e-93
 Identities = 166/339 (48%), Positives = 230/339 (66%)

Query: 46   ASVTSDPTLFIKRTTSTITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFF 105
            A    D TLF+K       V+LVYVDDI++A         + + L + F ++DLG  KFF
Sbjct: 1095 AKCHGDHTLFVKAQDGFFLVVLVYVDDILIASTTEAASAELTSQLSSFFQLRDLGEPKFF 1154

Query: 106  LGLEVAHSAKGITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYR 165
            LG+E+A +A GI++CQ++Y LDLL  +    CKPSSIPM+P+Q+L +D      D  +YR
Sbjct: 1155 LGIEIARNADGISLCQRKYVLDLLASSDFSDCKPSSIPMEPNQKLSKDTGTLLEDGKQYR 1214

Query: 166  ALVGKLLYLTSTRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSS 225
             ++GKL YL  TRPDI+F V +L Q+  +PT  H +A HK+LRYLK + G GLF+  D++
Sbjct: 1215 RILGKLQYLCLTRPDINFAVSKLAQYSSAPTDIHLQALHKILRYLKGTIGQGLFYGADTN 1274

Query: 226  LHLLGYSDADWGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATC 285
              L G+SD+DW  CPDTRR +TG+  F+G SLVSW+SKKQ  VS SS+EAEYRA++ AT 
Sbjct: 1275 FDLRGFSDSDWQTCPDTRRCVTGFAIFVGNSLVSWRSKKQDVVSMSSAEAEYRAMSVATK 1334

Query: 286  ELQWLVYLLTDLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGL 345
            EL WL Y+LT   +  +    L CD+++ALHIA+N VFHERTKH++ DCH VRE +++G+
Sbjct: 1335 ELIWLGYILTAFKIPFTHPAYLYCDNEAALHIANNSVFHERTKHIENDCHKVRECIEAGI 1394

Query: 346  MELFPISSQEQIADILTKALHPASFNHLIAKLSLLNIYQ 384
            ++   + +  Q+AD LTK L+P  F    +KL LLNIY+
Sbjct: 1395 LKTIFVRTDNQLADTLTKPLYPKPFRENNSKLGLLNIYE 1433


>At2g15920 putative retroelement pol polyprotein
          Length = 1100

 Score =  337 bits (864), Expect = 7e-93
 Identities = 182/391 (46%), Positives = 256/391 (64%), Gaps = 28/391 (7%)

Query: 1    MKIPQGL---EGI--PPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLF 55
            MK+P+G    +GI  P + VC+L +S+YGLKQASR+W++K S  L+S G+  +  D TLF
Sbjct: 724  MKLPEGSAERKGIILPSNAVCRLKRSIYGLKQASRQWFKKFSASLLSLGFFKIHGDHTLF 783

Query: 56   IKRTTS--TITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHS 113
            +        + ++LVYVDDIV+A  + D        LHN+F ++DLG LK+FL LE++ +
Sbjct: 784  LIDCGGEYVVVLVLVYVDDIVIASTNED--------LHNLFKLRDLGDLKYFLCLEISRT 835

Query: 114  AKGITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLY 173
              GI++C ++   +LL   G + CKP S+PM  + +L + D E   D  +YR +VGKL+ 
Sbjct: 836  EVGISLCHRKNAWELLASIGMINCKPVSVPMITNVKLMKADGELLEDREQYRRIVGKLMD 895

Query: 174  LTSTRPDISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSD 233
            LT TRPDI+               TH +AAH+VL+Y+K   G GLF+   S L L G++D
Sbjct: 896  LTITRPDITLRT------------THLQAAHRVLQYIKGIVGQGLFYSASSDLTLKGFAD 943

Query: 234  ADWGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYL 293
            +DW  C D+RRS TG+  F+G SL+S +SKKQ+ VSRSS+EAEYRALA ATCEL  L  L
Sbjct: 944  SDWVSCADSRRSTTGFTMFVGDSLISLRSKKQRVVSRSSAEAEYRALALATCELVSLHTL 1003

Query: 294  LTDLNVTCSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISS 353
            L  L    S VP L  +S +A++IA NPVFHERTKH +IDC+ VREK+  G ++L  + +
Sbjct: 1004 LVSLTAATS-VPILFSNSTTAIYIAINPVFHERTKHTEIDCNTVREKVDDGELKLLHVRT 1062

Query: 354  QEQIADILTKALHPASFNHLIAKLSLLNIYQ 384
            ++Q+ADI+TK L P  F HL  K+S+LNI++
Sbjct: 1063 EDQVADIMTKPLSPHQFEHLKFKMSILNIFE 1093


>At2g24660 putative retroelement pol polyprotein
          Length = 1156

 Score =  324 bits (830), Expect = 6e-89
 Identities = 165/385 (42%), Positives = 239/385 (61%), Gaps = 21/385 (5%)

Query: 1    MKIPQGLEGIPPHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTT 60
            MK+P G     P KVC+L KSLYGLKQA R W++KLS  L+  G+     D + F     
Sbjct: 763  MKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDALLRFGFVQGHEDYSFFSYTRN 822

Query: 61   STITVLLVYVDDIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITIC 120
                 +LVYVDD+++ GND   +Q  K  L   F +KDLG LK+FLG+EV+  ++GI + 
Sbjct: 823  GIELRVLVYVDDLLICGNDGYMLQKFKEYLGRCFSMKDLGKLKYFLGIEVSRGSEGIFLS 882

Query: 121  QQQYCLDLLNKTGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPD 180
            Q++Y LD++  +G LGC+P+  P++ +  L  DD     DA  YR LVG+LLYL  TRP+
Sbjct: 883  QRKYALDIITDSGNLGCRPALTPLEQNHHLATDDGPLLADAKPYRRLVGRLLYLLHTRPE 942

Query: 181  ISFTVQQLCQFLDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCP 240
            +S++V  L QF+ +P   H  AA +++R+LK SPG G+    D+ L L  Y D+D+  CP
Sbjct: 943  LSYSVHVLSQFMQTPREAHLAAAMRIVRFLKGSPGQGILLNADTELQLDVYCDSDFQTCP 1002

Query: 241  DTRRSITGYCFFIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVT 300
             TRRS++ Y   +G S +SWK+KKQ TVS SS+EAEYRA++ A  E++WL  LL +L   
Sbjct: 1003 KTRRSLSAYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAMSVALREIKWLRKLLKEL--- 1059

Query: 301  CSKVPALVCDSQSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADI 360
                              +NPVFHERTKH++ DCH VR+ ++ G++    + + EQ+ADI
Sbjct: 1060 ------------------ANPVFHERTKHIESDCHSVRDAVRDGIITTHHVRTNEQLADI 1101

Query: 361  LTKALHPASFNHLIAKLSLLNIYQP 385
             TKAL  + F +L++KL + +++ P
Sbjct: 1102 FTKALGRSQFLYLMSKLGIQDLHTP 1126


>At4g19780 putative LTR retrotransposon (fragment)
          Length = 306

 Score =  323 bits (827), Expect = 1e-88
 Identities = 153/296 (51%), Positives = 208/296 (69%)

Query: 90  LHNVFGIKDLGILKFFLGLEVAHSAKGITICQQQYCLDLLNKTGTLGCKPSSIPMDPSQR 149
           L + F ++DLG  K+FLG+E+A S KGI+ICQ++Y L+LL+ TG LG KPSSIP+DPS +
Sbjct: 8   LKSYFKLRDLGAAKYFLGIEIARSEKGISICQRKYILELLSTTGFLGSKPSSIPLDPSVK 67

Query: 150 LHRDDSEPYVDASEYRALVGKLLYLTSTRPDISFTVQQLCQFLDSPTATHFKAAHKVLRY 209
           L+++D  P  D++ YR LVGKL+YL  TRPDI++ V  LCQF  +PT+ H  A HKVLRY
Sbjct: 68  LNKEDGVPLTDSTSYRKLVGKLMYLQITRPDIAYAVNTLCQFSHAPTSVHLNAVHKVLRY 127

Query: 210 LKTSPGTGLFFPRDSSLHLLGYSDADWGGCPDTRRSITGYCFFIGKSLVSWKSKKQQTVS 269
           LK + G GLF+P D    L GY+D+D+G C D+RR +  YC FIG SLVSWKSKKQ TVS
Sbjct: 128 LKGTVGQGLFYPADDKFDLRGYTDSDFGSCTDSRRCVAAYCMFIGDSLVSWKSKKQDTVS 187

Query: 270 RSSSEAEYRALAAATCELQWLVYLLTDLNVTCSKVPALVCDSQSALHIASNPVFHERTKH 329
            S++EAE+RA++  T E+ WL  LL D  V       L  D+ +ALHI +N VFHERTK 
Sbjct: 188 MSTAEAEFRAMSQGTKEMIWLSRLLDDFKVPFIPPAYLYSDNTAALHIVNNSVFHERTKF 247

Query: 330 LDIDCHVVREKLQSGLMELFPISSQEQIADILTKALHPASFNHLIAKLSLLNIYQP 385
           +++DC+  RE ++SG +    + + EQ+ D L KA++PA F+ LI K+ + NI+ P
Sbjct: 248 VELDCYKTREAVESGFLRTMFVETGEQVVDPLAKAIYPAQFHKLIGKMGVCNIFAP 303


>At2g06840 putative retroelement pol polyprotein
          Length = 1102

 Score =  320 bits (820), Expect = 8e-88
 Identities = 165/366 (45%), Positives = 231/366 (63%), Gaps = 4/366 (1%)

Query: 20   KSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTTSTITVLLVYVDDIVLAGND 79
            +SLYGLKQA R W+ KLS  L   G+     D +LF      T+   LVYVDD ++ GN+
Sbjct: 740  ESLYGLKQAPRCWFAKLSTALRKLGFTQSYEDYSLFSLNRDGTVIHFLVYVDDFIIVGNN 799

Query: 80   LDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITICQQQYCLDLLNKTGTLGCKP 139
            L  I   K  LH  F +KDLG LK+FLGLEV+  A G  + QQ+Y LD++N+ G LG KP
Sbjct: 800  LKAIDHFKEHLHKCFHMKDLGKLKYFLGLEVSRGADGFCLSQQKYALDIINEAGLLGYKP 859

Query: 140  SSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPDISFTVQQLCQFLDSPTATH 199
            S++PM+   +L    S  + + ++YR LV + +YLT TRPD+S+ V  L QF+ +P   H
Sbjct: 860  SAVPMELHHKLGSISSPVFDNPAQYRRLVDRFIYLTITRPDLSYAVHILSQFMQTPLEAH 919

Query: 200  FKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCPDTRRSITGYCFFIGKSLVS 259
            + A  +++RYLK SP  G+    D +L L  Y D+D+  CP TRRS++ Y  ++G + +S
Sbjct: 920  WHATLRLVRYLKGSPDQGILLRSDRALSLTAYCDSDYNPCPRTRRSLSAYVLYLGDTPIS 979

Query: 260  WKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVTCSKVPALVCDSQSALHIAS 319
            WK+KKQ TVS SS+EAEYRA+A    E++WL  L+T L V  ++   L CDSQ+A+HIA+
Sbjct: 980  WKTKKQDTVSSSSAEAEYRAMAYTLKEIKWLKALMTTLGVDHTQPILLFCDSQAAIHIAA 1039

Query: 320  NPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADILTKALHPASFNHLIAKLSL 379
            NPVFHERTKH++ DCH VR+ +   ++    IS+     D+LTKAL   +F  L++ L  
Sbjct: 1040 NPVFHERTKHIEKDCHQVRDAVTDKVISTPHIST----TDLLTKALPRPTFERLLSTLGT 1095

Query: 380  LNIYQP 385
             N   P
Sbjct: 1096 CNYDLP 1101


>At1g59265 polyprotein, putative
          Length = 1466

 Score =  317 bits (813), Expect = 5e-87
 Identities = 154/371 (41%), Positives = 232/371 (62%)

Query: 12   PHKVCKLDKSLYGLKQASRKWYEKLSHFLISAGYASVTSDPTLFIKRTTSTITVLLVYVD 71
            P+ VCKL K+LYGLKQA R WY +L ++L++ G+ +  SD +LF+ +   +I  +LVYVD
Sbjct: 1093 PNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVD 1152

Query: 72   DIVLAGNDLDEIQLIKNSLHNVFGIKDLGILKFFLGLEVAHSAKGITICQQQYCLDLLNK 131
            DI++ GND   +    ++L   F +KD   L +FLG+E      G+ + Q++Y LDLL +
Sbjct: 1153 DILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLAR 1212

Query: 132  TGTLGCKPSSIPMDPSQRLHRDDSEPYVDASEYRALVGKLLYLTSTRPDISFTVQQLCQF 191
            T  +  KP + PM PS +L         D +EYR +VG L YL  TRPDIS+ V +L QF
Sbjct: 1213 TNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQF 1272

Query: 192  LDSPTATHFKAAHKVLRYLKTSPGTGLFFPRDSSLHLLGYSDADWGGCPDTRRSITGYCF 251
            +  PT  H +A  ++LRYL  +P  G+F  + ++L L  YSDADW G  D   S  GY  
Sbjct: 1273 MHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIV 1332

Query: 252  FIGKSLVSWKSKKQQTVSRSSSEAEYRALAAATCELQWLVYLLTDLNVTCSKVPALVCDS 311
            ++G   +SW SKKQ+ V RSS+EAEYR++A  + E+QW+  LLT+L +  ++ P + CD+
Sbjct: 1333 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDN 1392

Query: 312  QSALHIASNPVFHERTKHLDIDCHVVREKLQSGLMELFPISSQEQIADILTKALHPASFN 371
              A ++ +NPVFH R KH+ ID H +R ++QSG + +  +S+ +Q+AD LTK L   +F 
Sbjct: 1393 VGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQ 1452

Query: 372  HLIAKLSLLNI 382
            +  +K+ +  +
Sbjct: 1453 NFASKIGVTRV 1463


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,549,673
Number of Sequences: 26719
Number of extensions: 344815
Number of successful extensions: 1045
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 826
Number of HSP's gapped (non-prelim): 140
length of query: 385
length of database: 11,318,596
effective HSP length: 101
effective length of query: 284
effective length of database: 8,619,977
effective search space: 2448073468
effective search space used: 2448073468
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)