BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146862.9 + phase: 0 
         (100 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g36050 unknown protein                                              34  0.014
At1g42110 hypothetical protein                                         27  1.3
At5g47140 unknown protein                                              27  1.7
At4g10320 isoleucine-tRNA ligase - like protein                        25  5.0
At3g03300 unknown protein                                              25  5.0
At3g01280 putative porin                                               25  5.0
At5g66150 alpha-mannosidase                                            25  6.5
At1g21320 hypothetical protein                                         25  6.5

>At4g36050 unknown protein
          Length = 609

 Score = 33.9 bits (76), Expect = 0.014
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 9/57 (15%)

Query: 47  PIIQYHHPCCYCGVKSSRGMVRKPGPKQGSLFFGCGNW---TATRGARCHYFEWASA 100
           P+ + H   C   V      V+KPGP  G  F+ C      ++   A C YF+WAS+
Sbjct: 554 PLCKGHKEACVARV------VKKPGPTFGRRFYVCSRAEGPSSNPEANCGYFKWASS 604


>At1g42110 hypothetical protein
          Length = 659

 Score = 27.3 bits (59), Expect = 1.3
 Identities = 17/52 (32%), Positives = 22/52 (41%), Gaps = 1/52 (1%)

Query: 2   HRGFKFSITNSIMWQTADRSLIWKQSPEQPSAYPHFPFKA-RDMNTPIIQYH 52
           H G K  +  S    T +R L       QP   P +  K  R+M + II YH
Sbjct: 57  HCGIKLVVEKSYGTSTMNRHLTLCPERPQPETRPKYDHKVDREMTSEIIIYH 108


>At5g47140 unknown protein
          Length = 470

 Score = 26.9 bits (58), Expect = 1.7
 Identities = 14/41 (34%), Positives = 23/41 (55%), Gaps = 1/41 (2%)

Query: 54 PCCYCGVKSSRGMVRKPGPKQGSLFFGCGNWTATRGARCHY 94
          PC +CGV S+  + R   P++  L   CG+   T+G+  +Y
Sbjct: 6  PCYHCGVTSTP-LWRNGPPEKPVLCNACGSRWRTKGSLVNY 45


>At4g10320 isoleucine-tRNA ligase - like protein
          Length = 1190

 Score = 25.4 bits (54), Expect = 5.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 24  WKQSPEQPSAYPHFPFKARDM 44
           W +S   P AY H+PF+ +++
Sbjct: 559 WFESGSMPYAYIHYPFENKEL 579


>At3g03300 unknown protein
          Length = 2042

 Score = 25.4 bits (54), Expect = 5.0
 Identities = 13/47 (27%), Positives = 24/47 (50%), Gaps = 1/47 (2%)

Query: 22  LIWKQSPEQPSAYPHFPFKARDMNTPIIQYHHPCCYCGVKSSRGMVR 68
           L +K  P++    P FP  +R M+T   ++ + C +  + SS   +R
Sbjct: 354 LDFKSKPQKTIILPTFPLDSRFMSTSFARHKYECQHM-ISSSYDAIR 399


>At3g01280 putative porin
          Length = 276

 Score = 25.4 bits (54), Expect = 5.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 37  FPFKARDMNTPIIQYHHPCCYCGVKSSRGMVRKP 70
           F FK  D N+  ++  +   Y G+ +S G+ + P
Sbjct: 94  FSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNP 127


>At5g66150 alpha-mannosidase
          Length = 1047

 Score = 25.0 bits (53), Expect = 6.5
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 73  KQGSLFFGCGNWTATRGARCHYFE 96
           K G L F  G W     A CHY +
Sbjct: 128 KSGQLEFVNGGWAMNDEATCHYID 151


>At1g21320 hypothetical protein
          Length = 381

 Score = 25.0 bits (53), Expect = 6.5
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 6/24 (25%)

Query: 65  GMVRK------PGPKQGSLFFGCG 82
           GMVR+      PGP  G L  GCG
Sbjct: 242 GMVRQGGSNMMPGPSMGELMAGCG 265


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.325    0.137    0.491 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,593,588
Number of Sequences: 26719
Number of extensions: 93614
Number of successful extensions: 241
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 8
length of query: 100
length of database: 11,318,596
effective HSP length: 76
effective length of query: 24
effective length of database: 9,287,952
effective search space: 222910848
effective search space used: 222910848
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)