BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146855.3 - phase: 0 
         (186 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g16720 ribosomal protein                                           344  1e-95
At4g17390 60S ribosomal protein L15 homolog                           343  2e-95
At1g67310 hypothetical protein                                         30  0.98
At3g12170 hypothetical protein                                         28  2.8
At5g42330 unknown protein                                              27  4.9
At5g05580 temperature-sensitive omega-3 fatty acid desaturase, c...    27  6.3
At5g12430 putative protein                                             27  8.3
At3g11170 omega-3 fatty acid desaturase, chloroplast precursor         27  8.3

>At4g16720 ribosomal protein
          Length = 204

 Score =  344 bits (883), Expect = 1e-95
 Identities = 162/186 (87%), Positives = 175/186 (93%)

Query: 1   MRFMQRVRCWEYRQQSSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVSKG 60
           MRF+QRVRCWEYRQQ SIVRL RPTRPDKARRLGYKAKQG+VVYRVRVRRGGRKRPV KG
Sbjct: 19  MRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTFKYFEVILVDVA 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW+NEDST+KY+E+ILVD A
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPA 138

Query: 121 HSAIRNDPRINWLTNPVHKHRELRGLTSAGKENRGLSGKGHRYHKARPSRRANWKRNNTL 180
           H+A+RNDPRINW+ NPVHKHRELRGLTS GK+NRGL GKGH  HK RPSRRA WK+NN+L
Sbjct: 139 HNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKKNNSL 198

Query: 181 SLRRYR 186
           SLRRYR
Sbjct: 199 SLRRYR 204


>At4g17390 60S ribosomal protein L15 homolog
          Length = 204

 Score =  343 bits (881), Expect = 2e-95
 Identities = 161/186 (86%), Positives = 175/186 (93%)

Query: 1   MRFMQRVRCWEYRQQSSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVSKG 60
           MRF+QRVRCWEYRQQ SIVRL RPTRPDKARRLGYKAKQG+VVYRVRVRRGGRKRPV KG
Sbjct: 19  MRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTFKYFEVILVDVA 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW+NEDST+KY+E+ILVD A
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPA 138

Query: 121 HSAIRNDPRINWLTNPVHKHRELRGLTSAGKENRGLSGKGHRYHKARPSRRANWKRNNTL 180
           H+A+RNDPRINW+ NPVHKHRELRGLTS GK+NRGL GKGH  HK RPSRRA WK+NN++
Sbjct: 139 HNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKKNNSI 198

Query: 181 SLRRYR 186
           SLRRYR
Sbjct: 199 SLRRYR 204


>At1g67310 hypothetical protein
          Length = 1016

 Score = 29.6 bits (65), Expect = 0.98
 Identities = 23/96 (23%), Positives = 37/96 (37%), Gaps = 19/96 (19%)

Query: 73  QLKFQRSKRSVAEERAGRKLGGLRVLNSYWVN--EDSTFKYFEVILVDVAHSAIRNDPRI 130
           Q + +R  R++AE     K+G    LN Y+ +  +D TF+                  RI
Sbjct: 97  QWRRKRDGRAIAEAHERLKVGNAEALNCYYAHGEQDPTFR-----------------RRI 139

Query: 131 NWLTNPVHKHRELRGLTSAGKENRGLSGKGHRYHKA 166
            W+ +P ++H  L       +   G    G  Y  A
Sbjct: 140 YWMLDPEYEHIVLVHYRDVSEREEGQQTGGQVYQFA 175


>At3g12170 hypothetical protein
          Length = 262

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 7/80 (8%)

Query: 18  IVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVSKGIV------YGKPTNQGV 71
           I  +  PT P K RR   KA     +Y V  +RG  ++     +       YG   +   
Sbjct: 180 IAEMEPPTNPQKMRRKAAKAAD-KDLYAVMSQRGDERKEKFDSMFSSLVSRYGSNADSEP 238

Query: 72  TQLKFQRSKRSVAEERAGRK 91
            + +F+ ++R V   R+ +K
Sbjct: 239 NEEEFEAAQRKVESRRSSKK 258


>At5g42330 unknown protein
          Length = 205

 Score = 27.3 bits (59), Expect = 4.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 47  RVRRGGRKRPVSKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRK 91
           R+RR   +  V  G+V G P N GV        +R  A++ + +K
Sbjct: 113 RLRRKKGEEAVEGGVVKGTPYNLGVNHEPMTNKRRGTAKKESIKK 157


>At5g05580 temperature-sensitive omega-3 fatty acid desaturase,
           chloroplast precursor (sp|P48622)
          Length = 435

 Score = 26.9 bits (58), Expect = 6.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 101 YWVNEDSTFKYFEVILVDVAHSAIRNDPRIN 131
           YW  + + F    V+  D  H +  NDPR+N
Sbjct: 140 YWFAQGTMFWALFVLGHDCGHGSFSNDPRLN 170


>At5g12430 putative protein
          Length = 1187

 Score = 26.6 bits (57), Expect = 8.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 31  RRLGYKAKQGYVVYRVRVRRGGRKRPVSKGIVYGK 65
           ++LG+ AK+  V    R RR G K+PV   +  G+
Sbjct: 326 QKLGFNAKKDSVGATTRARRKGGKQPVKVQLNIGR 360


>At3g11170 omega-3 fatty acid desaturase, chloroplast precursor
          Length = 446

 Score = 26.6 bits (57), Expect = 8.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 101 YWVNEDSTFKYFEVILVDVAHSAIRNDPRIN 131
           YW+ + + F    V+  D  H +  NDP++N
Sbjct: 147 YWLAQGTMFWALFVLGHDCGHGSFSNDPKLN 177


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.322    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,232,691
Number of Sequences: 26719
Number of extensions: 170704
Number of successful extensions: 347
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 8
length of query: 186
length of database: 11,318,596
effective HSP length: 93
effective length of query: 93
effective length of database: 8,833,729
effective search space: 821536797
effective search space used: 821536797
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)