BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146855.1 + phase: 0 /pseudo
(1356 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45230 putative non-LTR retroelement reverse transcriptase 249 1e-65
At2g25550 putative non-LTR retroelement reverse transcriptase 238 2e-62
At2g31520 putative non-LTR retroelement reverse transcriptase 225 1e-58
At4g10830 putative protein 211 2e-54
At1g24640 hypothetical protein 206 1e-52
At4g09710 RNA-directed DNA polymerase -like protein 197 3e-50
At2g01840 putative non-LTR retroelement reverse transcriptase 197 3e-50
At3g31420 hypothetical protein 190 5e-48
At3g32110 non-LTR reverse transcriptase, putative 189 7e-48
At2g17910 putative non-LTR retroelement reverse transcriptase 184 2e-46
At2g15540 putative non-LTR retroelement reverse transcriptase 171 2e-42
At2g15510 putative non-LTR retroelement reverse transcriptase 162 2e-39
At2g07670 putative non-LTR retrolelement reverse transcriptase 159 8e-39
At2g05200 putative non-LTR retroelement reverse transcriptase 157 5e-38
At2g16680 putative non-LTR retroelement reverse transcriptase 153 6e-37
At4g04000 putative reverse transcriptase 146 7e-35
At4g26360 putative protein 145 2e-34
At1g25430 hypothetical protein 137 3e-32
At2g06295 putative protein 135 2e-31
At1g47910 reverse transcriptase, putative 132 1e-30
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 249 bits (635), Expect = 1e-65
Identities = 141/467 (30%), Positives = 241/467 (51%), Gaps = 14/467 (2%)
Query: 1 MNVIAWNCRGLGNVKAVPCIKDLVRVYKPDIVILIETLCNNNKISGLKYAIGFDYHFSVD 60
M +++WNC+G+GN V ++++ +Y P+++ L ET N + + +GF +V+
Sbjct: 1 MRILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVE 60
Query: 61 CIGRSGGIAVLWRNSAHCSILNYSQHFINMSI--QDPVKGPWRLTAFYGYPDHGRRRDSW 118
IG+SGG+A++W++S +L + I+ + QD + LT YG P R + W
Sbjct: 61 PIGKSGGLALMWKDSVQIKVLQSDKRLIDALLIWQDK---EFYLTCIYGEPVQAERGELW 117
Query: 119 ELLRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGY 178
E L L PW + GDFN+ + PS+K GGP R F++ ++ C L ++ +GY
Sbjct: 118 ERLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGY 177
Query: 179 QFTWFKSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQLDPPPWRA 238
QF+W+ + + R+DR + W+ELFP A L SDH+PL+ L WR
Sbjct: 178 QFSWYGN-RNDELVQCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNWR- 235
Query: 239 PHNSFRFNNSWLIEPELAHLVKDNWSYYPSSN---IVTKLSYCIEDMKYWSKANHPHFNQ 295
F+++ W+ L+ + WS + ++ K++ C ++ W + + P
Sbjct: 236 KWAGFKYDKRWVQREGFKDLLCNFWSQQSTKTNALMMEKIASCRREISKWKRVSKPSSAV 295
Query: 296 RKQQLKNQIDVMRNTSDASVDPR-LIELQNSLANLILQEDVYWRQRSKIFWLKDGDKNSK 354
R Q+L+ ++D T D R L L+ L+ E+ +W+++S+I W+++GD+N+K
Sbjct: 296 RIQELQFKLDAA--TKQIPFDRRELARLKKELSQEYNNEEQFWQEKSRIMWMRNGDRNTK 353
Query: 355 FFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLFQAIN-GDQQPVITRIQ 413
+FH +RR +N I KL G TS +D+ YF LF + + G + +
Sbjct: 354 YFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVEELENLT 413
Query: 414 ARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQFFF 460
V++ N L P + +E + A FS++ K PGPDG+N YQ F+
Sbjct: 414 PLVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFW 460
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 238 bits (606), Expect = 2e-62
Identities = 137/441 (31%), Positives = 230/441 (52%), Gaps = 11/441 (2%)
Query: 23 LVRVYKPDIVILIETLCNNNKISGLKYAIGFDYHFSVDCIGRSGGIAVLWRNSAHCSILN 82
L R+Y DI+ L+ETL +K+ L Y +GF + GRSGG+A++W+N+ S+++
Sbjct: 404 LFRMYNYDILFLVETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLALMWKNNVSLSLIS 463
Query: 83 YSQHFINMSIQDPVKGPWRLTAFYGYPDHGRRRDSWELLRSLHSQSDDPWCIIGDFNDHL 142
+ I+ + K + L+ YG+P R W+ L + + W ++GDFN+ L
Sbjct: 464 QDERLIDSHVTFNNKS-FYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEIL 522
Query: 143 SPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQFTWFKSIGTSHAKEARIDRALCT 202
S ++K GGP R W R F+ VS C++ D+ G +F+W T H + +DR
Sbjct: 523 SNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGERHT-HTVKCCLDRVFIN 581
Query: 203 APWLELFPHASLQTLVAPMSDHTPLLLQLDPP-PWRAPHNSFRFNNSWLIEPELAHLVKD 261
+ W FP+A ++ L SDH P+L+ + P R+ FRF+N + P +V+
Sbjct: 582 SAWTATFPYAEIEFLDFTGSDHKPVLVHFNESFPRRS--KLFRFDNRLIDIPTFKRIVQT 639
Query: 262 NWSYYPSSN---IVTKLSYCIEDMKYWSKANHPHFNQRKQQLKNQIDVMRNTSDASVDPR 318
+W +S I ++S C + M A++ + QR ++L++ ++ S VD +
Sbjct: 640 SWRTNRNSRSTPITERISSCRQAMARLKHASNLNSEQRIKKLQSSLN-RAMESTRRVDRQ 698
Query: 319 LI-ELQNSLANLILQEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRRKNTISKLRHPNG 377
LI +LQ SLA E++YW+Q+S+ W+K+GD+N+ +FH +R +N ++ + G
Sbjct: 699 LIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQG 758
Query: 378 FWLTSQDDMSAHIHDYFSGLFQAINGDQQPV-ITRIQARVTENDNATLTKPFSIDEFKEA 436
T ++ H D+F+ +F P+ ++ VT N LTK FS E +A
Sbjct: 759 RMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDA 818
Query: 437 VFSMHSDKSPGPDGLNPGFYQ 457
+ + DK+PGPDGL FY+
Sbjct: 819 ICQIGDDKAPGPDGLTARFYK 839
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 225 bits (574), Expect = 1e-58
Identities = 131/429 (30%), Positives = 221/429 (50%), Gaps = 11/429 (2%)
Query: 35 IETLCNNNKISGLKYAIGFDYHFSVDCIGRSGGIAVLWRNSAHCSILNYSQHFINMSIQD 94
+ETL +K+ L Y +GF + GRSGG+A++W+N+ S+++ + I+ +
Sbjct: 190 LETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLALMWKNNVSLSLISQDERLIDSHVTF 249
Query: 95 PVKGPWRLTAFYGYPDHGRRRDSWELLRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRP 154
K + L+ YG+P R W+ L + + W ++GDFN+ LS ++K GGP R
Sbjct: 250 NNKS-FYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMRE 308
Query: 155 HWLIRGFQEAVSDCNLIDLPLNGYQFTWFKSIGTSHAKEARIDRALCTAPWLELFPHASL 214
W R F+ VS C++ D+ G +F+W T H + +DR + W FP+A
Sbjct: 309 EWTFRNFRNMVSHCDIEDMRSKGDRFSWVGERHT-HTVKCCLDRVFINSAWTATFPYAET 367
Query: 215 QTLVAPMSDHTPLLLQLDPP-PWRAPHNSFRFNNSWLIEPELAHLVKDNWSYYPSSN--- 270
+ L SDH P+L+ + P R+ FRF+N + P +V+ +W +S
Sbjct: 368 EFLDFTGSDHKPVLVHFNESFPRRS--KLFRFDNRLIDIPTFKRIVQTSWRTNRNSRSTP 425
Query: 271 IVTKLSYCIEDMKYWSKANHPHFNQRKQQLKNQIDVMRNTSDASVDPRLI-ELQNSLANL 329
I ++S C + M A++ + QR ++L++ ++ S VD +LI +LQ SLA
Sbjct: 426 ITERISSCRQAMARLKHASNLNSEQRIKKLQSSLN-RAMESTRRVDRQLIPQLQESLAKA 484
Query: 330 ILQEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAH 389
E++YW+Q+S+ W+K+GD+N+ +FH +R +N ++ + G T ++ H
Sbjct: 485 FSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNH 544
Query: 390 IHDYFSGLFQAINGDQQPV-ITRIQARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGP 448
D+F+ +F P+ ++ VT N LTK FS E +A+ + DK+PGP
Sbjct: 545 AQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGP 604
Query: 449 DGLNPGFYQ 457
DGL FY+
Sbjct: 605 DGLTARFYK 613
>At4g10830 putative protein
Length = 1294
Score = 211 bits (538), Expect = 2e-54
Identities = 138/454 (30%), Positives = 219/454 (47%), Gaps = 9/454 (1%)
Query: 9 RGLGNVKAVPCIKDLVRVYKPDIVILIETLCNNNKISGLKYAIGFDYHFSVDCIGRSGGI 68
+G+G + +L +V+K D++ LIETL IS L +GF + G SGG+
Sbjct: 370 KGIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGL 429
Query: 69 AVLWRNSAHCSILNYSQHFINMSIQDPVKGPWRLTAFYGYPDHGRRRDSWELLRSLHSQS 128
A+LW++S S L I++ I + L+ YG+P R W +L
Sbjct: 430 ALLWKDSVRLSNLYQDDRHIDVHISINNIN-FYLSRVYGHPCQSERHSLWTHFENLSKTR 488
Query: 129 DDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQFTWFKSIGT 188
+DPW +IGDFN+ LS ++K GGP R W RGF+ VS C+L D+ G +F+W
Sbjct: 489 NDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGE-RH 547
Query: 189 SHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQLDPPPWRAPHNSFRFNNS 248
SH + +DRA + LFP A L+ L SDH PL L L+ R FRF+
Sbjct: 548 SHTVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTETR-KMRPFRFDKR 606
Query: 249 WLIEPELAHLVKDNWSYY---PSSNIVTKLSYCIEDMKYWSKANHPHFNQRKQQLKNQID 305
L P VK W+ ++ ++ C + M ++ + R QL+ +D
Sbjct: 607 LLEVPHFKTYVKAGWNKAINGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALD 666
Query: 306 VMRNTSDASVDPRLIELQNSLANLILQEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRR 365
++ + + + +Q L E+ YW+Q+S+ W+K+GD+N++FFH +R
Sbjct: 667 KAMSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFS 726
Query: 366 KNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLFQAINGDQQPVI--TRIQARVTENDNAT 423
N + ++ G ++ H ++F+ ++++ NG +I + VTE N
Sbjct: 727 VNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYES-NGRPVSIIDFAGFKPIVTEQINDD 785
Query: 424 LTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQ 457
LTK S E A+ + DK+PGPDGL FY+
Sbjct: 786 LTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYK 819
>At1g24640 hypothetical protein
Length = 1270
Score = 206 bits (523), Expect = 1e-52
Identities = 122/418 (29%), Positives = 207/418 (49%), Gaps = 14/418 (3%)
Query: 53 FDYHFSVDCIGRSGGIAVLWRNSAHCSILNYSQHFINMSIQDPVKGPWRLTAFYGYPDHG 112
+D ++V+ +G+ GG+A+LW++S + ++ ++ +Q + ++ YG PD
Sbjct: 16 YDQVYTVEPVGKCGGLALLWKSSVQVDLKFVDKNLMDAQVQFGAVN-FCVSCVYGDPDRS 74
Query: 113 RRRDSWELLRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLID 172
+R +WE + + D WC+ GDFND L +K GGP R + F E + C+L++
Sbjct: 75 KRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVE 134
Query: 173 LPLNGYQFTWFKSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQLD 232
+P +G FTW G H + R+DRA W FP ++ L SDH P+L++L
Sbjct: 135 MPAHGNGFTWAGRRG-DHWIQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKL- 192
Query: 233 PPPWRAPHNSFRFNNSWLIEPELAHLVKDNWS---YYPSSNIVTKLSYCIEDMKYWSKAN 289
+ FRF+ +L + ++ + WS + + ++ +L C + + W K N
Sbjct: 193 MSSQDSYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGTNISVADRLRACRKSLSSWKKQN 252
Query: 290 HPHFNQRKQQLKNQIDVMRNTSDASVDP---RLIELQNSLANLILQEDVYWRQRSKIFWL 346
N NQ++ + V P R+ L+ LA +E+ YW+Q+S+ WL
Sbjct: 253 ----NLNSLDKINQLEAALEKEQSLVWPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWL 308
Query: 347 KDGDKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLFQAIN-GDQ 405
+ G++NSK+FH R++ I KL+ NG TS+ YF LF++ N
Sbjct: 309 RSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGF 368
Query: 406 QPVITRIQARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQFFFGMI 463
+ + RV+E N +L S E KEAVFS+ +PGPDG++ F+Q ++ +
Sbjct: 369 TDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTV 426
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 197 bits (501), Expect = 3e-50
Identities = 125/415 (30%), Positives = 201/415 (48%), Gaps = 29/415 (6%)
Query: 51 IGFDYHFSVDCIGRSGGIAVLWRNSAHCSILNYSQHFINMSIQDPVKGPWRLTAFYGYPD 110
+G+ + F++ G SGG+A+ W+ + IL + +FI+
Sbjct: 17 MGYAHRFTIPPEGLSGGLALYWKENVEVEILEAAPNFID--------------------- 55
Query: 111 HGRRRDSWELLRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNL 170
R W+ + SL +Q W + GDFND L S+K+GGP R F+ VS L
Sbjct: 56 --NRSVFWDKISSLGAQRSSAWLLTGDFNDILDNSEKQGGPLRWEGFFLAFRSFVSQNGL 113
Query: 171 IDLPLNGYQFTWFKSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQ 230
D+ G +W + SH ++R+DRAL W ELFP + + L SDH PL+
Sbjct: 114 WDINHTGNSLSW-RGTRYSHFIKSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPLVTY 172
Query: 231 LDPPPWRAPHNSFRFNNSWLIEPELAHLVKDNWSYYPSSNIVTKLSYCIEDMKYWSKANH 290
PP + FRF+ + E+ LVK+ W +++ K+S C + + W+K +
Sbjct: 173 FGAPPLKRS-KPFRFDRRLREKEEIRALVKEVWELARQDSVLYKISRCRQSIIKWTKEQN 231
Query: 291 PHFNQRKQQLKNQIDVMRNTSDASVDPRLI-ELQNSLANLILQEDVYWRQRSKIFWLKDG 349
N K K Q + S DP LI + L QE+++W+Q S++ WL G
Sbjct: 232 S--NSAKAIKKAQQALESALSADIPDPSLIGSITQELEAAYRQEELFWKQWSRVQWLNSG 289
Query: 350 DKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLF-QAINGDQQPV 408
D+N +FH T +RR N +S + +G ++ +++ I YF +F + N D Q V
Sbjct: 290 DRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQIASTISSYFQNIFTTSNNSDLQVV 349
Query: 409 ITRIQARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQFFFGMI 463
+ ++ + N L K S+ E KEA+FS+ +DK+PGPDG + F+ ++ +I
Sbjct: 350 QEALSPIISSHCNEELIKISSLLEIKEALFSISADKAPGPDGFSASFFHAYWDII 404
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 197 bits (501), Expect = 3e-50
Identities = 136/533 (25%), Positives = 248/533 (46%), Gaps = 21/533 (3%)
Query: 1 MNVIAWNCRGLGNVKAVPCIKDLVRVYKPDIVILIETLCNNNKISGLKYAIGFDYHFSVD 60
M V WNC+GLG V ++++ RVY D++ LIET +N L +GF+ +
Sbjct: 363 MRVGFWNCQGLGQPLTVRRLEEVQRVYFLDMLFLIETKQQDNYTRDLGVKMGFEDMCIIS 422
Query: 61 CIGRSGGIAVLWRNSAHCSILNYSQHFINMSIQDPVKGPWRLTAFYGYPDHGRRRDSWEL 120
G SGG+ V W+ ++++ +++ ++ + L+ YG+P R WE
Sbjct: 423 PRGLSGGLVVYWKKHLSIQVISHDVRLVDLYVEYK-NFNFYLSCIYGHPIPSERHHLWEK 481
Query: 121 LRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQF 180
L+ + + PW + GDFN+ L+ ++K+GG R ++ F ++ CN+ DL G +
Sbjct: 482 LQRVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCCNMKDLKSKGNPY 541
Query: 181 TWFKSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQLDPPPWRAPH 240
+W + E+ +DR + W FP + L SDH P+++ +
Sbjct: 542 SWVGK-RQNETIESCLDRVFINSDWQASFPAFETEFLPIAGSDHAPVIIDIAEEVC-TKR 599
Query: 241 NSFRFNNSWLIEPELAHLVKDNWSYYPSSN---IVTKLSYCIEDMKYWSKANHPHFNQRK 297
FR++ + V+ W+ S + KL C +++ W + + ++
Sbjct: 600 GQFRYDRRHFQFEDFVDSVQRGWNRGRSDSHGGYYEKLHCCRQELAKWKRRTKTNTAEKI 659
Query: 298 QQLKNQIDVMRNTSDASVDPRLIELQNSLANLILQEDVYWRQRSKIFWLKDGDKNSKFFH 357
+ LK ++D ++ L+ L E++YW +S+ W+ GD+N+ FF+
Sbjct: 660 ETLKYRVDAAER-DHTLPHQTILRLRQDLNQAYRDEELYWHLKSRNRWMLLGDRNTMFFY 718
Query: 358 LTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLFQAI-NGDQQPVITRIQARV 416
+ R+ +N I + G D + +YF+ LF D + +I+ I +V
Sbjct: 719 ASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAENYFADLFTTTQTSDWEEIISGIAPKV 778
Query: 417 TENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQFFFGMI-----LVLRFSVQ 471
TE N L + + E ++AVF++ +D++PG DG FY + +I L++R +
Sbjct: 779 TEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWDLIGNDVCLMVRHFFE 838
Query: 472 LALGSNLVLSRLISMTQTLFLHPKVITRKQLKT-SALSLCATSSTKLSLKSLL 523
+ V+ I+ TQ + L PK+I K + +SLC T+S K+ K L+
Sbjct: 839 -----SDVMDNQINQTQ-ICLIPKIIDPKHMSDYRPISLC-TASYKIISKILI 884
>At3g31420 hypothetical protein
Length = 1491
Score = 190 bits (482), Expect = 5e-48
Identities = 121/451 (26%), Positives = 218/451 (47%), Gaps = 18/451 (3%)
Query: 19 CIKDLVRVYKPDIVILIETLCNNNKISGLKYAIGFDYHFSVDCIGRSGGIAVLWRNSAHC 78
C K+L+ DI+ L ET +++I + +GF H +V G SGG+ V W +S
Sbjct: 204 CRKNLL-----DIICLSETKQQDDRIRDVGAELGFCNHVTVPPDGLSGGLVVFWNSSVDI 258
Query: 79 SILNYSQHFINMSIQDPVKGPWRLTAFYGYPDHGRRRDSWELLRSLHS-QSDDPWCIIGD 137
+ + + +++ ++ +G + L+ YG+P+ R WE L L++ + W I+GD
Sbjct: 259 FLCFSNSNLVDLHVKSN-EGSFYLSFVYGHPNPSHRHHLWERLERLNTTRQGTAWFIMGD 317
Query: 138 FNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQFTWFKSIGTSHAKEARID 197
FN+ LS +KRGG RP + F+ V CN DL G +F+W G H +D
Sbjct: 318 FNEILSNREKRGGRLRPERTFQDFRNMVRGCNFTDLKSVGDRFSWAGKRGDHHVT-CSLD 376
Query: 198 RALCTAPWLELFPHASLQTLVAPMSDHTPLLLQLDPPPWRAPHNSFRFNNSWLIEPELAH 257
R + W LFP + + SDH PL+ + F +++ +
Sbjct: 377 RTMANNEWHTLFPESETVFMEYGESDHRPLVTNISAQK-EERRGFFSYDSRLTHKEGFKQ 435
Query: 258 LVKDNW-----SYYPSSNIVTKLSYCIEDMKYWSKANHPHFNQRKQQLKNQIDVMRNTSD 312
+V + W S+ S++ KL C + + W K N + +R + +++++D T
Sbjct: 436 VVLNQWHRRNGSFEGDSSLNRKLVECRQAISRWKKNNRVNAEERIKIIRHKLDRAIATGT 495
Query: 313 ASVDPRLIELQNSLANLILQEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRRKNTISKL 372
A+ R +++ L E++YW+ +S+ WL GD+N+++FH T +RR +N + +
Sbjct: 496 ATPRERR-QMRQDLNQAYADEEIYWQTKSRSRWLNAGDRNTRYFHSTTKTRRCRNRLLSV 554
Query: 373 RHPNGFWLTSQDDMSAHIHDYFSGLFQAINGDQ---QPVITRIQARVTENDNATLTKPFS 429
+ +G ++++ +YF L+++ V Q ++T+ N L +P +
Sbjct: 555 QDSDGDICRGDENIAKVAINYFDDLYKSTPNTSLRYADVFQGFQQKITDEINEDLIRPVT 614
Query: 430 IDEFKEAVFSMHSDKSPGPDGLNPGFYQFFF 460
E +E+VFS+ ++P PDG FYQ F+
Sbjct: 615 ELEIEESVFSVAPSRTPDPDGFTADFYQQFW 645
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 189 bits (481), Expect = 7e-48
Identities = 133/438 (30%), Positives = 205/438 (46%), Gaps = 37/438 (8%)
Query: 26 VYKPDIVILIETLCNNNKISGLKYAIGFDYHFSVDCIGRSGGIAVLWRNS-AHCSILNYS 84
VY D++ + ET ++ S + +GF+ F VD +G SGG+ +LWR S+++ +
Sbjct: 591 VYITDVLAIFETHAGGDQASRICQGLGFENSFRVDAVGHSGGLWLLWRTGIGEVSVVDST 650
Query: 85 QHFINMSIQDPVKGPWRLTAFYGYPDHGRRRDSWELLRSLHSQSDDPWCIIGDFNDHLSP 144
FI+ + K L Y P RR W+ L + D P I GDFN +
Sbjct: 651 DQFIHAKDVNG-KDNVNLVVVYAAPTASRRSGLWDRLGDVIRSMDGPVVIGGDFNTIVRL 709
Query: 145 SDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQFTWFKSIGTSHAKEARIDRALCTAP 204
++ GG R F E ++D +LIDL G +FTW + R+DR LC A
Sbjct: 710 DERSGGNGRLSSDSLAFGEWINDHSLIDLGFKGNKFTWKRGREERFFVAKRLDRVLCCAH 769
Query: 205 WLELFPHASLQTLVAPMSDHTPLLLQLDPP-PWRAPHNSFRFNNSWLIEPELAHLVKDNW 263
+ AS+ L SDH PL +QL P FRF +WL P L+ +W
Sbjct: 770 ARLKWQEASVLHLPFLASDHAPLYVQLTPEVSGNRGRRPFRFEAAWLSHPGFKELLLTSW 829
Query: 264 SYYPSSNIVTKLSYCIEDMKYWSKANHPHFNQRKQQLKNQIDVMRNTSDASVDPRLIELQ 323
+ S+ K+ ++ +Q LK + ++++ D V
Sbjct: 830 NKDISTPEALKVQELLD------------LHQSDDLLKKEEELLK---DFDV-------- 866
Query: 324 NSLANLILQEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQ 383
++ QE+V W Q+S+ W GD+N+KFFH + RRR+N I L+ +G WL++
Sbjct: 867 -----VLEQEEVVWMQKSREKWFVHGDRNTKFFHTSTIIRRRRNQIEMLQDNDGRWLSNA 921
Query: 384 DDMSAHIHDYFSGLFQAINGDQQPVITRIQ----ARVTENDNATLTKPFSIDEFKEAVFS 439
++ H DY+ L+ D V+ ++ ++E D ++LTKPFS E + A+ S
Sbjct: 922 QELETHAIDYYKRLYSL--DDLDAVVEQLPQEGFTALSEADFSSLTKPFSPLEVEGAIRS 979
Query: 440 MHSDKSPGPDGLNPGFYQ 457
M K+PGPDG P FYQ
Sbjct: 980 MGKYKAPGPDGFQPVFYQ 997
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 184 bits (468), Expect = 2e-46
Identities = 121/441 (27%), Positives = 211/441 (47%), Gaps = 12/441 (2%)
Query: 29 PDIVILIETLCNNNKISGLKYAIGFDYHFSVDCIGRSGGIAVLWRNSAHCSILNYSQHFI 88
PDI+ L+ET + + + + +G+D+ +V+ GRSGG+A+ W++ L ++ +
Sbjct: 7 PDILFLMETKNSQDFVYKVFCWLGYDFIHTVEPEGRSGGLAIFWKSHLEIEFLYADKNLM 66
Query: 89 NMSIQDPVKGPWRLTAFYGYPDHGRRRDSWELLRSLHSQSDDPWCIIGDFNDHLSPSDKR 148
++ + K W ++ YG P R WE L S+ + + WC+IGDFND S +K
Sbjct: 67 DLQVSSRNK-VWFISCVYGLPVTHMRPKLWEHLNSIGLKRAEAWCLIGDFNDIRSNDEKL 125
Query: 149 GGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQFTWFKSIGTSHAKEARIDRALCTAPWLEL 208
GGP R + F+ + +C++ +L G FTW + + ++DR W +
Sbjct: 126 GGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGNRNDQWV-QCKLDRCFGNPAWFSI 184
Query: 209 FPHASLQTLVAPMSDHTPLLLQL--DPPPWRAPHNSFRFNNSWLIEPELAHLVKDNWSYY 266
FP+A L SDH P+L++ D +R FR++ +P ++ +W+
Sbjct: 185 FPNAHQWFLEKFGSDHRPVLVKFTNDNELFR---GQFRYDKRLDDDPYCIEVIHRSWNSA 241
Query: 267 PSSNIVT---KLSYCIEDMKYWSKANHPHFNQRKQQLKNQIDVMRNTSDASVDPRLIELQ 323
S + L C + W ++ + R ++L+ +D ++ PR+ ++
Sbjct: 242 MSQGTHSSFFSLIECRRAISVWKHSSDTNAQSRIKRLRKDLDAEKSI-QIPCWPRIEYIK 300
Query: 324 NSLANLILQEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQ 383
+ L+ E+++WRQ+S+ WL GDKN+ FFH T S R KN +S L N T
Sbjct: 301 DQLSLAYGDEELFWRQKSRQKWLAGGDKNTGFFHATVHSERLKNELSFLLDENDQEFTRN 360
Query: 384 DDMSAHIHDYFSGLFQAIN-GDQQPVITRIQARVTENDNATLTKPFSIDEFKEAVFSMHS 442
D +F LF + + +QA+VT N L + + E AVFS++
Sbjct: 361 SDKGKIASSFFENLFTSTYILTHNNHLEGLQAKVTSEMNHNLIQEVTELEVYNAVFSINK 420
Query: 443 DKSPGPDGLNPGFYQFFFGMI 463
+ +PGPDG F+Q + ++
Sbjct: 421 ESAPGPDGFTALFFQQHWDLV 441
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 171 bits (434), Expect = 2e-42
Identities = 129/530 (24%), Positives = 224/530 (41%), Gaps = 77/530 (14%)
Query: 1 MNVIAWNCRGLGNVKAVPCIKDLVRVYKPDIVILIETLCNNNKISGLKYAIGFDYHFSVD 60
M +I+WNC+G+G ++++ R+Y P + L ET + + ++ ++GFD +V+
Sbjct: 1 MRLISWNCQGVGPKTTSRRLEEMCRMYSPGFLFLSETKNDLVYLQNVQVSLGFDCLKTVE 60
Query: 61 CIGRSGGIAVLWRNSAHCSILNYSQHFINMSIQDPVKGPWRLTAF-YGYPDHGRRRDSWE 119
IG SGG+A+ + + I+ I+ + G F YG P R W+
Sbjct: 61 PIGNSGGLALFYSRDYPVKFIYVCDRLID--IETIIDGNRVFITFVYGDPVVQYRELVWK 118
Query: 120 LLRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQ 179
L + +PW +IGDFN+ + +KRGG R F + +C +ID P G
Sbjct: 119 RLTRIGIVRSEPWFMIGDFNEIIGNHEKRGGKKRSESSFLPFCCMIENCGMIDFPSTGSL 178
Query: 180 FTWF--KSIGTSHAK-----EARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQLD 232
F+W +S G + K + R+DRA+ W ++ H +++ L SDH PLL +
Sbjct: 179 FSWVGKRSCGVAGRKRRDLIKCRLDRAMGNEEWHSIYSHTNVEYLQHRGSDHKPLLASIQ 238
Query: 233 PPPWRAPHNSFRFNNSWLIEPELAHLVKDNWSYYPSSN----IVTKLSYCIEDMKYWSKA 288
P+R P+ F F+ W+ +P V++ W+ +PS K+ C + + W K+
Sbjct: 239 NKPYR-PYKHFIFDKRWINKPGFKESVQEGWA-FPSRGEGVPFFQKIKNCRQTISIWKKS 296
Query: 289 NHPHFNQRKQQLKNQIDVMRNTSDASVDPRLIELQNSLANLILQEDVYWRQRSKIFWLKD 348
N + + +L +Q+D+ + S + L+ L+ L E+++W
Sbjct: 297 NKTNTEKLILELHSQLDLAYEDENFSTED-LLALKWKLCQAYRDEEIFW----------- 344
Query: 349 GDKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLFQAINGDQQPV 408
KL++P F
Sbjct: 345 ----------------------KLKNPQVF---------------------------DSA 355
Query: 409 ITRIQARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQFFFGMILVLRF 468
+ + +TE N +LTK S +E K A+FS++ DK+PGPDG+ FYQ ++ +
Sbjct: 356 LQEVPVLITEEMNKSLTKVISPEEVKRALFSLNPDKAPGPDGMTAFFYQHYWDLTGPDLI 415
Query: 469 SVQLALGSNLVLSRLISMTQTLFLHPKVITRKQLKTSALSLCATSSTKLS 518
+ S ++ T + RK + +SLC S +S
Sbjct: 416 KLVQNFHSTGFFDERLNETNICLIPKTERPRKMAEFRPISLCNVSYKVIS 465
>At2g15510 putative non-LTR retroelement reverse transcriptase
Length = 1138
Score = 162 bits (409), Expect = 2e-39
Identities = 110/420 (26%), Positives = 193/420 (45%), Gaps = 25/420 (5%)
Query: 35 IETLCNNNKISGLKYAIGFDYHFSVDCIGRSGGIAVLWRNSAHCSILNYSQHFINMSIQD 94
+ET +N + L+ +G+D ++V+ +G SGG+A+ W+ + + ++ I+ IQ
Sbjct: 1 METKNCSNVVVDLQEWLGYDRVYTVNPVGLSGGLALFWKKGVNIDVRYADKNLIDFQIQF 60
Query: 95 PVKGPWRLTAFYGYPDHGRRRDSWELLRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRP 154
+ ++ YG P + WE + + +PWC++GDFN L +KRGGP R
Sbjct: 61 G-SYDFFVSCVYGDPAFSNKHLVWEKISKIGLNRKEPWCMLGDFNVILHNGEKRGGPRRG 119
Query: 155 HWLIRGFQEAVSDCNLIDLPLNGYQFTWFKSIGTSHAKEARIDRALCTAPWLELFPHASL 214
F++ + C++++LP G F+W S + R+DR W FP ++
Sbjct: 120 DSSFISFKDMLECCDMLELPSKGNPFSW-GGKRNSLWIQCRLDRCFGNKNWFRHFPVSNQ 178
Query: 215 QTLVAPMSDHTPLLLQLDPPPWRAPHNSFRFNNSWLIEPELAHLVKDNWS---YYPSSNI 271
+ L SD P+L++L N FRF+ +P + ++ W+ +
Sbjct: 179 EFLDKRGSDRRPVLVRLSKTKEEYKGN-FRFDKRLFNQPLVKEAIQQAWNGNQRVGGMQV 237
Query: 272 VTKLSYCIEDMKYWSKANHPHFNQRKQQLKNQIDVMRNTSDASVDPRLIELQNSLANLIL 331
+ +L C + W + N+ + Q + ++ + +S + L+N L
Sbjct: 238 LERLKKCRSALSRWKQENNSNSLTCISQARAALE-LEQSSGFPRSKVVFTLKNDLCKANQ 296
Query: 332 QEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIH 391
E+ +W Q+S+ W+ GDKN+ FFH AS + ++ +SK A
Sbjct: 297 DEETFWSQKSRAKWMHGGDKNTSFFH--ASVKDNRDEVSK---------------GAIAE 339
Query: 392 DYFSGLFQAINGDQ-QPVITRIQARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDG 450
YF LF++ G + Q RVTE N LT S +E ++AVF++ S +PG DG
Sbjct: 340 SYFKDLFKSSEGSNFADLFAGFQPRVTEVMNRVLTATVSKNEVRDAVFAIRSSSAPGADG 399
>At2g07670 putative non-LTR retrolelement reverse transcriptase
Length = 913
Score = 159 bits (403), Expect = 8e-39
Identities = 111/414 (26%), Positives = 191/414 (45%), Gaps = 48/414 (11%)
Query: 1 MNVIAWNCRGLGNVKAVPCIKDLVRVYKPDIVILIETLCNNNKISGLKYAIGFDYHFSVD 60
M+ + WNCRG+ I+ +++ ++ D++ L ET K + +GF+ F VD
Sbjct: 505 MDCLKWNCRGVNKPNFRRSIRYMLKKHRIDVLALFETHAGGEKAVRIYQNLGFENSFRVD 564
Query: 61 CIGRSGGIAVLWRNS-AHCSILNYSQHFINMSIQDPVKGPWRLTAFYGYPDHGRRRDSWE 119
G+SGGI +LW++ SI+ ++ FI+ + + + L A Y P R+
Sbjct: 565 ARGQSGGIWLLWKSEVGDVSIVESAEQFIHAKVGNGL-AAIHLLAVYAAPSTRRKNGG-- 621
Query: 120 LLRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQ 179
N LSP F E +++ +LID+ G +
Sbjct: 622 -------------------NGGLSPDS------------LAFGEWINELSLIDMGFKGNK 650
Query: 180 FTWFKSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQLDPP----P 235
FTW + S R+DR LC + AS+ L SDH P+ +QL+P P
Sbjct: 651 FTWKRGRVESTFVAKRLDRVLCRPQTRLKWQEASVTHLPFFASDHAPIYIQLEPEVRSNP 710
Query: 236 WRAPHNSFRFNNSWLIEPELAHLVKDNWSYYPSSNIVTKLSYCIEDMKYWSKANHPHFNQ 295
R P FRF +WL L++ +W+ + + L+ +K W++ N+
Sbjct: 711 LRRP---FRFEAAWLTHSGFKDLLQASWNTEGETPVA--LAALKSKLKKWNREVFGDVNR 765
Query: 296 RKQQLKNQIDVMRNTSDASVDPRLIELQNSLAN----LILQEDVYWRQRSKIFWLKDGDK 351
RK+ L N+I V++ + + L+ + L ++ QE+V W Q+S+ W++ GD+
Sbjct: 766 RKESLMNEIKVVQELLEINQTDNLLSKEEELIKEFDVVLEQEEVLWFQKSREKWVELGDR 825
Query: 352 NSKFFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLFQAINGDQ 405
N+K+FH RRR+N I L+ +G W++ Q ++ DY+S L+ + D+
Sbjct: 826 NTKYFHTMTVVRRRRNRIEMLKADDGSWVSQQQELEKMAVDYYSRLYSMEDVDE 879
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 157 bits (396), Expect = 5e-38
Identities = 94/326 (28%), Positives = 169/326 (51%), Gaps = 4/326 (1%)
Query: 139 NDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNLIDLPLNGYQFTWFKSIGTSHAKEARIDR 198
N+ L S+KRGGP R F+ +S L DL +G F+W + + R+DR
Sbjct: 36 NEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSW-RGMRYDWFVRQRLDR 94
Query: 199 ALCTAPWLELFPHASLQTLVAPMSDHTPLLLQLDPPPWRAPHNSFRFNNSWLIEPELAHL 258
A+ WLE FP + L SDH PL++ +D + FRF+N + L
Sbjct: 95 AMSNNSWLESFPSGRSEYLRFEGSDHRPLVVFVDEARVKR-RGQFRFDNRLRDNDVVNAL 153
Query: 259 VKDNWSYYPSSNIVTKLSYCIEDMKYWSKANHPHFNQRKQQLKNQIDVMRNTSDASVDPR 318
+++ W+ ++++TK++ C ++ W++ + + + ++ + ++ T+D
Sbjct: 154 IQETWTNAGDASVLTKMNQCRREIINWTRLQNLNSAELIEKTQKALEEAL-TADPPNPTT 212
Query: 319 LIELQNSLANLILQEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRRKNTISKLRHPNGF 378
+ L +L + E+ +W+QRS++ WL GD+N+ +FH +RR +N ++ + NG
Sbjct: 213 IGALTATLEHAYKLEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQNRLTVMEDINGV 272
Query: 379 WLTSQDDMSAHIHDYFSGLFQA-INGDQQPVITRIQARVTENDNATLTKPFSIDEFKEAV 437
+ +S I YF +F + +GD V I+ V++ DN LT+ + +E K+AV
Sbjct: 273 AQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRIPNDEEVKDAV 332
Query: 438 FSMHSDKSPGPDGLNPGFYQFFFGMI 463
FS+++ K+PGPDG GFY ++ +I
Sbjct: 333 FSINASKAPGPDGFTAGFYHSYWHII 358
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 153 bits (387), Expect = 6e-37
Identities = 106/404 (26%), Positives = 190/404 (46%), Gaps = 16/404 (3%)
Query: 51 IGFDYHFSVDCIGRSGGIAVLWRNSAHCSILNYSQHFINMSIQDPVKGPWRLTAFYGYPD 110
+G+DY +++ +G+SGG+A+ W+N L ++ +++ + K W ++ YG P
Sbjct: 14 LGYDYFHTIEPVGKSGGLAIFWKNHLEIDFLFEDKNLLDLKVSQGKKS-WFVSCVYGNPV 72
Query: 111 HGRRRDSWELLRSLHSQSDDPWCIIGDFNDHLSPSDKRGGPDRPHWLIRGFQEAVSDCNL 170
R + L S+ Q + WC+IGDFND LS K GGP R + F+ + +C++
Sbjct: 73 LHLRYLLLDKLSSIGVQRNSAWCMIGDFNDILSNDGKLGGPSRLISSFQPFKNMLLNCDM 132
Query: 171 IDLPLNGYQFTWFKSIGTSHAK--EARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLL 228
+ +G FTW GT + + + ++DR + W +F ++ L S H P+L
Sbjct: 133 HQMGSSGNSFTWG---GTRNDQWIQCKLDRCFGNSEWFTMFSNSHQWFLEKLGSHHRPVL 189
Query: 229 LQL--DPPPWRAPHNSFRFNNSWLIEPELAHLVKDNW---SYYPSSNIVTKLSYCIEDMK 283
+ D +R F ++ + +P+ A +W S+ + ++ C + +
Sbjct: 190 VNFVNDQEVFR---GQFCYDKRFAEDPQCAASTLSSWIGNGISDVSSSMLRMVKCRKAIS 246
Query: 284 YWSKANHPHFNQRKQQLKNQIDVMRNTSDASVDPRLIELQNSLANLILQEDVYWRQRSKI 343
W K + + R +L++++D + R+ +Q L +E+ +WR +SK
Sbjct: 247 GWKKNSDFNAQNRILRLRSELD-EEKSKQYPCWSRISVIQTQLGVAFREEESFWRLKSKD 305
Query: 344 FWLKDGDKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLF-QAIN 402
WL GD+NSKFF + R KN++ L NG T + YF LF +
Sbjct: 306 KWLFGGDRNSKFFQAMVKANRTKNSLRFLVDENGNEHTLNREKGNIASVYFENLFMSSYP 365
Query: 403 GDQQPVITRIQARVTENDNATLTKPFSIDEFKEAVFSMHSDKSP 446
+ Q + + RV+E N LT+ + E AVFS++ + +P
Sbjct: 366 ANSQSALDGFKTRVSEEMNQELTQAVTELEIHSAVFSINVESAP 409
>At4g04000 putative reverse transcriptase
Length = 1077
Score = 146 bits (369), Expect = 7e-35
Identities = 85/267 (31%), Positives = 140/267 (51%), Gaps = 9/267 (3%)
Query: 195 RIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQLDPPPWRAPHNSFRFNNSWLIEPE 254
R+DRA+ + W+ +P + L SDH PL+ D + N FR++ + PE
Sbjct: 172 RLDRAMANSDWIIAYPSGRSEYLRFEGSDHRPLVTSFDHVQ-KKTKNIFRYDRTLKDNPE 230
Query: 255 LAHLVKDNWSYYPSSNIVTKLSYCIEDMKYWSKANHPHFNQRKQQLKNQIDVMRNTSDAS 314
++ L+ + W PS+ + +L C + WSK +H N +K+ L ++ + +D +
Sbjct: 231 ISKLMNETWKSNPSAKVDYRLHLCRAALLNWSKEHH--LNSQKEILSLRVQLEEALTDDA 288
Query: 315 VDPRLIELQNSLANLIL---QEDVYWRQRSKIFWLKDGDKNSKFFHLTASSRRRKNTISK 371
++L N NL+L +E+ +W+QRS+ WL GDKNS FFH +SRR NTIS
Sbjct: 289 ATQDSVDLLNQ--NLLLAYRKEETFWKQRSRNLWLALGDKNSCFFHAATNSRRAINTISV 346
Query: 372 LRHPNGFWLTSQDDMSAHIHDYFSGLFQAINGDQQPVITR-IQARVTENDNATLTKPFSI 430
+ + G + ++ I DYF +F + GD+ V+ + +T + N TL ++
Sbjct: 347 IENSAGTSVYEDSEIIETISDYFQDIFTSQEGDRTSVVAEALSPCITTDMNNTLISLPTV 406
Query: 431 DEFKEAVFSMHSDKSPGPDGLNPGFYQ 457
E K+A S+H DK+PG DG + F+Q
Sbjct: 407 AEIKQACLSIHPDKAPGRDGFSASFFQ 433
>At4g26360 putative protein
Length = 1141
Score = 145 bits (365), Expect = 2e-34
Identities = 121/421 (28%), Positives = 193/421 (45%), Gaps = 33/421 (7%)
Query: 53 FDYHFSVDCIGRSGGIAVLWRNSAHCSILNYSQHFINMSIQDPVKGPWR-LTAFYGYPDH 111
FD ++ +G+ I VLW S I+ S I + P W ++ Y +
Sbjct: 51 FDENYGFSDLGK---IWVLWDPSVEVVIVAKSLQMITCEVLFPNSRTWIVISVVYAANED 107
Query: 112 GRRRDSWELLRSLHSQS---DDPWCIIGDFNDHLSPSD-KRGGPDRPHWLIRGFQEAVSD 167
+R++ W + +L + + PW ++GDFN L P + R IR F+E + D
Sbjct: 108 DKRKELWREITALVASPVTFNRPWILLGDFNQVLHPHEHSRHVSLNVDRRIRDFRECLLD 167
Query: 168 CNLIDLPLNGYQFTWFKSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTP- 226
L DL G FTW+ T + +IDR L W LFP + SDH
Sbjct: 168 AELSDLVYKGSSFTWWNKSKTRPVAK-KIDRILVNESWSNLFPSSFGLFGPPDFSDHASC 226
Query: 227 -LLLQLDPPPWRAPHNSFRFNNSWLIEPELAHLVKDNWSYYPSSNIV--------TKLSY 277
++L+LDP + P F+F N L PE +LV D W S+N+V KL
Sbjct: 227 GVVLELDPIKAKRP---FKFFNFLLKNPEFLNLVWDVWY---STNVVGSSMFRVSKKLKA 280
Query: 278 CIEDMKYWSKANHPHFNQRKQQLKNQIDVMRNTS--DASVDPRLIEL--QNSLANLILQE 333
+ +K +S+ N+ + +R ++ + +N + + S++ EL Q L E
Sbjct: 281 LKKPIKDFSRLNYSNLEKRTEEAHETLLSFQNLTLDNPSLENAAHELEAQRKWQILATAE 340
Query: 334 DVYWRQRSKIFWLKDGDKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDY 393
+ ++RQRS++ W +GD N+++FH A SR+ NTI+ L +G + SQ ++ H Y
Sbjct: 341 ESFFRQRSRVTWFAEGDGNTRYFHRMADSRKSVNTITTLVDDSGTQIDSQQGIADHCALY 400
Query: 394 FSGLFQAING----DQQPVITRIQARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGPD 449
F L N +Q + + R + A L FS ++ K A F + S+K+ GPD
Sbjct: 401 FENLLSDDNDPYSLEQDDMNLLLTYRCPYSQVADLEAMFSDEDIKAAFFGLPSNKACGPD 460
Query: 450 G 450
G
Sbjct: 461 G 461
>At1g25430 hypothetical protein
Length = 1213
Score = 137 bits (346), Expect = 3e-32
Identities = 129/478 (26%), Positives = 210/478 (42%), Gaps = 29/478 (6%)
Query: 2 NVIAWNCRGLGNVKAVPCIKDLVRVYKPDIVILIETLCNNNK----ISGLKYAIGFDYHF 57
N+ WN RG NV K V+ KP +IET K I+ L F ++
Sbjct: 4 NLFCWNIRGFNNVSHRSGFKKWVKANKPIFGGVIETHVKQPKDRKFINALLPGWSFVENY 63
Query: 58 SVDCIGRSGGIAVLWRNSAHCSILNYSQHFINMSIQDPVKGPWRLTAF-YGYPDHGRRRD 116
+ +G+ I V+W S ++ S I + P W + + Y + R++
Sbjct: 64 AFSDLGK---IWVMWDPSVQVVVVAKSLQMITCEVLLPGSPSWIIVSVVYAANEVASRKE 120
Query: 117 SW-ELLRSLHSQ--SDDPWCIIGDFNDHLSPSDKRGGPDRPHWL-IRGFQEAVSDCNLID 172
W E++ + S D PW ++GDFN L+P + + +R F++ + L D
Sbjct: 121 LWIEIVNMVVSGIIGDRPWLVLGDFNQVLNPQEHSNPVSLNVDINMRDFRDCLLAAELSD 180
Query: 173 LPLNGYQFTWF-KSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAPMSDHTPLLLQL 231
L G FTW+ KS T AK +IDR L W LFP + SDH + L
Sbjct: 181 LRYKGNTFTWWNKSHTTPVAK--KIDRILVNDSWNALFPSSLGIFGSLDFSDHVSCGVVL 238
Query: 232 DPPPWRAPHNSFRFNNSWLIEPELAHLVKDNW---SYYPSS--NIVTKLSYCIEDMKYWS 286
+ +A F+F N L + +LV+DNW + SS + KL + +K +S
Sbjct: 239 EETSIKAKR-PFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKDFS 297
Query: 287 KANHPHFNQRKQQLKNQIDVMRNTSDASVDPRL----IELQNSLANLILQEDVYWRQRSK 342
+ N+ +R ++ + + ++ + A P +E + L E+ ++RQ+S+
Sbjct: 298 RLNYSELEKRTKEAHDFLIGCQDRTLADPTPINASFELEAERKWHILTAAEESFFRQKSR 357
Query: 343 IFWLKDGDKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLF---- 398
I W +GD N+K+FH A +R N+IS L NG + SQ+ + YF L
Sbjct: 358 ISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLGDEV 417
Query: 399 QAINGDQQPVITRIQARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFY 456
+Q + + R + L FS ++ + A+FS+ +KS GPDG F+
Sbjct: 418 DPYLMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFF 475
>At2g06295 putative protein
Length = 418
Score = 135 bits (340), Expect = 2e-31
Identities = 82/301 (27%), Positives = 146/301 (48%), Gaps = 7/301 (2%)
Query: 161 FQEAVSDCNLIDLPLNGYQFTWFKSIGTSHAKEARIDRALCTAPWLELFPHASLQTLVAP 220
F+ +S+ +L DL +G +W + I SH R+DRA+ + W +LFP L+ L
Sbjct: 76 FRSFLSESDLFDLKHSGESLSW-RGIRYSHVIRCRLDRAIANSVWTDLFPSRRLEYLRFK 134
Query: 221 MSDHTPLLLQLDPPPWRAPHNSFRFNNSWLIEPELAHLVKDNWSYYPSSNIVTKLSYCIE 280
SDH P++ + FR++ E+ L+K+ W+ PS ++ +++ C +
Sbjct: 135 GSDHRPIVTYFAKKK-KKTRGVFRYDRRLKNNAEVTQLIKECWNREPSFSVSQRIAICRK 193
Query: 281 DMKYWSKANHPHFNQRKQQLKNQIDVMRNTSDASVDPRLIELQNSLANLILQEDVYWRQR 340
++ WS+ + + +Q K +++ S + D L ++ L + YW+QR
Sbjct: 194 EIVAWSREKQRNSQKLIEQKKMELE-QAMVSPENNDDLLAKINLDLTEAYKLGEGYWKQR 252
Query: 341 SKIFWLKDGDKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLFQA 400
S+I WL GD+NS FFH RR +N +S + +G + ++ I YF +F +
Sbjct: 253 SRIMWLCLGDQNSGFFHAVTKKRRARNCLSVIEDESGNPVFEDHKITEVISAYFHKMFHS 312
Query: 401 INGDQQ----PVITRIQARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFY 456
+ D+ V + V+E N L S+ E +A+ +H+DK PGP+ + F+
Sbjct: 313 DDLDESHTRATVTEALSPCVSEETNLALIAVPSLKEIHDALMGIHADKVPGPEDFSASFF 372
Query: 457 Q 457
Q
Sbjct: 373 Q 373
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 132 bits (332), Expect = 1e-30
Identities = 84/293 (28%), Positives = 132/293 (44%), Gaps = 6/293 (2%)
Query: 222 SDHTPLLLQLDPPPWRAPHNSFRFNNSWLIEPELAHLVKDNW---SYYPSSNIVTKLSYC 278
SDH+P++ + R N FRF+ W+ + L + W S + V KL+ C
Sbjct: 4 SDHSPVIATIADKIPRGKQN-FRFDKRWIGKDGLLEAISQGWNLDSGFREGQFVEKLTNC 62
Query: 279 IEDMKYWSKANHPHFNQRKQQLKNQIDVMRNTSDASVDPRLIELQNSLANLILQEDVYWR 338
+ W K+ P Q + LK ++DV + D S + + EL L E+ YW
Sbjct: 63 RRAISKWRKSLIPFGRQTIEDLKAELDVAQRDDDRSRE-EITELTLRLKEAYRDEEQYWY 121
Query: 339 QRSKIFWLKDGDKNSKFFHLTASSRRRKNTISKLRHPNGFWLTSQDDMSAHIHDYFSGLF 398
Q+S+ W+K GD NSKFFH RR +N I+ L NG W DD+ YF LF
Sbjct: 122 QKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVSYFQNLF 181
Query: 399 QAINGDQ-QPVITRIQARVTENDNATLTKPFSIDEFKEAVFSMHSDKSPGPDGLNPGFYQ 457
N + +Q +T+ N LT + E + A+F +H +K+PGPDG+ F+Q
Sbjct: 182 TTANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPGPDGMTALFFQ 241
Query: 458 FFFGMILVLRFSVQLALGSNLVLSRLISMTQTLFLHPKVITRKQLKTSALSLC 510
+ +I S+ + V + ++ T + + + +SLC
Sbjct: 242 KSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLC 294
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.338 0.147 0.484
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,743,475
Number of Sequences: 26719
Number of extensions: 1186463
Number of successful extensions: 3833
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3609
Number of HSP's gapped (non-prelim): 85
length of query: 1356
length of database: 11,318,596
effective HSP length: 111
effective length of query: 1245
effective length of database: 8,352,787
effective search space: 10399219815
effective search space used: 10399219815
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 66 (30.0 bits)
Medicago: description of AC146855.1