BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146853.8 + phase: 0 /partial
(71 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g24500 unknown protein 60 2e-10
At3g55670 putative protein 28 1.1
At5g38720 unknown protein 26 3.2
At4g39380 unknown protein 26 4.2
At4g00160 unknown protein 26 4.2
At3g52680 unknown protein 26 4.2
At5g46420 unknown protein 25 5.4
At1g10290 putative phragmoplastin 25 5.4
At4g35940 putative protein 25 7.1
At3g24490 hypothetical protein 25 7.1
At1g23090 putative sulphate transporter protein 25 7.1
At5g28400 putative protein 25 9.2
At3g61780 putative protein 25 9.2
At2g21440 unknown protein (At2g21440) 25 9.2
>At5g24500 unknown protein
Length = 334
Score = 60.5 bits (145), Expect = 2e-10
Identities = 31/60 (51%), Positives = 43/60 (71%), Gaps = 7/60 (11%)
Query: 1 GFTKSEVTVIDTSCRVWKVDKFVF-RKNDWKIRERKQKNKFVA------KKKSKLTRELD 53
GF++SEVTVIDTS ++WK +K VF R+N WK+RE+K K++ V+ KKK K R+ D
Sbjct: 197 GFSRSEVTVIDTSFKIWKSEKLVFRRRNVWKVREKKGKSRVVSKLKKLMKKKKKKKRKCD 256
>At3g55670 putative protein
Length = 218
Score = 27.7 bits (60), Expect = 1.1
Identities = 11/38 (28%), Positives = 22/38 (56%)
Query: 14 CRVWKVDKFVFRKNDWKIRERKQKNKFVAKKKSKLTRE 51
C + +++ FV+R+ DW E K+ ++ K +L +E
Sbjct: 75 CLLSQLETFVWRRLDWGREEEKEIATYILKNGRRLKKE 112
>At5g38720 unknown protein
Length = 306
Score = 26.2 bits (56), Expect = 3.2
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 25 RKNDWKIRERKQKNKFVAKKKSKLTRELDIHGIGS 59
R++ +K +K+K +KK++K+ E D++ I S
Sbjct: 130 RESKFKKSNKKKKMDMTSKKENKIEEEEDVYQISS 164
>At4g39380 unknown protein
Length = 518
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/39 (35%), Positives = 16/39 (40%)
Query: 32 RERKQKNKFVAKKKSKLTRELDIHGIGSSKYSFFNSYHC 70
+E K K KF KKS T +IH G Y C
Sbjct: 14 KEIKAKGKFTRAKKSMKTTTKNIHQSGKHNSGKEEKYKC 52
>At4g00160 unknown protein
Length = 453
Score = 25.8 bits (55), Expect = 4.2
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 14 CRVWKVDKFVFRKNDWKIRERKQKNKFVAKKKSKLTR 50
C + ++ FV+R+ DW E K+ ++ K +L +
Sbjct: 365 CLLSHLETFVWRRFDWGREEEKEIATYILKNARRLNK 401
>At3g52680 unknown protein
Length = 456
Score = 25.8 bits (55), Expect = 4.2
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 14 CRVWKVDKFVFRKNDWKIRERKQKNKFVAKKKSKLTR 50
C + +++ FV+R+ DW E K+ ++ K +L +
Sbjct: 368 CLLSQLETFVWRRFDWGREEEKEIATYILKNGRRLKK 404
>At5g46420 unknown protein
Length = 653
Score = 25.4 bits (54), Expect = 5.4
Identities = 10/21 (47%), Positives = 15/21 (70%)
Query: 25 RKNDWKIRERKQKNKFVAKKK 45
R+ +WK R+++QK AKKK
Sbjct: 278 RQLEWKERKKQQKRLIAAKKK 298
>At1g10290 putative phragmoplastin
Length = 914
Score = 25.4 bits (54), Expect = 5.4
Identities = 13/41 (31%), Positives = 23/41 (55%), Gaps = 3/41 (7%)
Query: 26 KNDWKIRERKQKNKFVAKKKSKLTRELDIH---GIGSSKYS 63
+ D ++ R+++ + + SKLTR+L IH +S YS
Sbjct: 789 QEDQNVKRRRERYQKQSSLLSKLTRQLSIHDNRAAAASSYS 829
>At4g35940 putative protein
Length = 451
Score = 25.0 bits (53), Expect = 7.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 25 RKNDWKIRERKQKNKFVAKKKSKLTRELDIHGIGSSKYS 63
R++D K ++ K++ K +KK K +E + +GS K S
Sbjct: 43 RRSDKKDKKDKKERKEKKEKKEKKRKEREGKEVGSEKRS 81
>At3g24490 hypothetical protein
Length = 333
Score = 25.0 bits (53), Expect = 7.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 43 KKKSKLTRELDIHGIGSSKYSFFN 66
+K K +++ G+GSSK+SFFN
Sbjct: 148 RKYRKEKIKVEKSGLGSSKWSFFN 171
>At1g23090 putative sulphate transporter protein
Length = 631
Score = 25.0 bits (53), Expect = 7.1
Identities = 7/15 (46%), Positives = 11/15 (72%)
Query: 10 IDTSCRVWKVDKFVF 24
+ +C +WK+DKF F
Sbjct: 427 LPAACHIWKIDKFDF 441
>At5g28400 putative protein
Length = 996
Score = 24.6 bits (52), Expect = 9.2
Identities = 12/27 (44%), Positives = 19/27 (69%), Gaps = 2/27 (7%)
Query: 30 KIRERKQKNKFVAKKKSKLTRELDIHG 56
K+ ER +K F+ KK +KL RE+++ G
Sbjct: 820 KLPERNKK--FMEKKLNKLKREMELFG 844
>At3g61780 putative protein
Length = 1121
Score = 24.6 bits (52), Expect = 9.2
Identities = 12/27 (44%), Positives = 19/27 (69%), Gaps = 2/27 (7%)
Query: 30 KIRERKQKNKFVAKKKSKLTRELDIHG 56
K+ ER +K F+ KK +KL RE+++ G
Sbjct: 907 KLPERNKK--FMEKKLNKLKREMELFG 931
>At2g21440 unknown protein (At2g21440)
Length = 1003
Score = 24.6 bits (52), Expect = 9.2
Identities = 16/35 (45%), Positives = 21/35 (59%)
Query: 18 KVDKFVFRKNDWKIRERKQKNKFVAKKKSKLTREL 52
K++K V RK K ERKQ K V +KK++ EL
Sbjct: 142 KLEKPVERKKVEKPIERKQVEKPVERKKAEKPIEL 176
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.323 0.135 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,609,135
Number of Sequences: 26719
Number of extensions: 52416
Number of successful extensions: 190
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 15
length of query: 71
length of database: 11,318,596
effective HSP length: 47
effective length of query: 24
effective length of database: 10,062,803
effective search space: 241507272
effective search space used: 241507272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)
Medicago: description of AC146853.8