BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146853.2 - phase: 0 /pseudo
(952 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g27210 putative protein 205 9e-53
At1g31210 putative reverse transcriptase 204 2e-52
At1g44510 polyprotein, putative 201 2e-51
At1g70010 hypothetical protein 195 9e-50
At1g36620 hypothetical protein 192 1e-48
At4g17450 retrotransposon like protein 187 2e-47
At2g16000 putative retroelement pol polyprotein 182 6e-46
At1g57640 179 9e-45
At2g20460 putative retroelement pol polyprotein 174 2e-43
At4g07810 putative polyprotein 172 6e-43
At1g26990 polyprotein, putative 167 2e-41
At3g61330 copia-type polyprotein 162 6e-40
At2g07550 putative retroelement pol polyprotein 162 6e-40
At3g59720 copia-type reverse transcriptase-like protein 162 1e-39
At1g48710 hypothetical protein 157 2e-38
At2g13930 putative retroelement pol polyprotein 155 1e-37
At2g16670 putative retroelement pol polyprotein 154 2e-37
At2g15650 putative retroelement pol polyprotein 153 4e-37
At1g32590 hypothetical protein, 5' partial 153 4e-37
At3g45520 copia-like polyprotein 150 3e-36
>At4g27210 putative protein
Length = 1318
Score = 205 bits (522), Expect = 9e-53
Identities = 135/399 (33%), Positives = 197/399 (48%), Gaps = 47/399 (11%)
Query: 160 VNSNFQKMCEANGIVFRLSCPYTSSQNGKSERKIRSTNNIIRTLLIHASLPSSFWHHALE 219
V+ F + +++GI +LSCP+T QNG +ERK R + ++L + +P FW A
Sbjct: 402 VSHKFLQHLQSHGIQQQLSCPHTPQQNGLAERKHRHLVELGLSMLFQSHVPHKFWVEAFF 461
Query: 220 MATYLMNILPHKTINFE-SPLKVLYHKDPSYNHLRVFGCLCFPLFPSSKIYKLQPRSTKC 278
A +L+N+LP + SP + LY K P Y LR FG CFP K P S KC
Sbjct: 462 TANFLINLLPTSALKESISPYEKLYDKKPDYTSLRSFGSACFPTLRDYAENKFNPCSLKC 521
Query: 279 VFLGYPSNHRGYKCLGLLSNKIIICRHVLFNENIFP----YAKLHIPQPNT---YTFLDN 331
VFLGY ++GY+CL + ++ I RHV+F+E+++P Y LH PQP T +L +
Sbjct: 522 VFLGYNEKYKGYRCLYPPTGRLYISRHVIFDESVYPFSHTYKHLH-PQPRTPLLAAWLRS 580
Query: 332 ELSPYIIQHLMDQTQTG-------PPIPQP--------------AHQPNHITSPCPN--- 367
SP +++ PP+PQ +H N T P+
Sbjct: 581 SDSPAPSTSTSPSSRSPLFTSADFPPLPQRKTPLLPTLVPISSVSHASNITTQQSPDFDS 640
Query: 368 ------------SPNITSPPQSNPTSPIQQNLPPIFQPTLQANTKP-ITRSQHGIFKPNQ 414
+ +S S+ IQQ + Q N P +TR++ GI KPN
Sbjct: 641 ERTTDFDSASIGDSSHSSQAGSDSEETIQQASVNVHQTHASTNVHPMVTRAKVGISKPNP 700
Query: 415 KYYGLHTHVTKSPLPRNPVSALKDPNWKMAMNDEYNSLIKNKTWDLVPRPPDVNVIRSMW 474
+Y L +H P P+ +ALK P W AM +E + + +TW LVP D++V+ S W
Sbjct: 701 RYVFL-SHKVSYPEPKTVTAALKHPGWTGAMTEEIGNCSETQTWSLVPYKSDMHVLGSKW 759
Query: 475 IFRHKEKSDGTFERHKARLVGDGAGQQVGIDCGETFSPM 513
+FR K +DGT + KAR+V G Q+ GID ET+SP+
Sbjct: 760 VFRTKLHADGTLNKLKARIVAKGFLQEEGIDYLETYSPV 798
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 204 bits (519), Expect = 2e-52
Identities = 122/363 (33%), Positives = 189/363 (51%), Gaps = 14/363 (3%)
Query: 160 VNSNFQKMCEANGIVFRLSCPYTSSQNGKSERKIRSTNNIIRTLLIHASLPSSFWHHALE 219
V++ + +GI R+SCPYT QNG +ERK R + ++L H+ P FW +
Sbjct: 587 VSNKLKTHLSEHGIHHRISCPYTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFF 646
Query: 220 MATYLMNILPHKTINFESPLKVLYHKDPSYNHLRVFGCLCFPLFPSSKIYKLQPRSTKCV 279
A Y++N LP + SP + L+ + P Y+ LRVFG C+P K PRS +CV
Sbjct: 647 TANYIINRLPSSVLKNLSPYEALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCV 706
Query: 280 FLGYPSNHRGYKCLGLLSNKIIICRHVLFNENIFPYAKLH---IPQ---PNTYTFLDNEL 333
FLGY S ++GY+C + K+ I R+V+FNE+ P+ + + +PQ P + N++
Sbjct: 707 FLGYNSQYKGYRCFYPPTGKVYISRNVIFNESELPFKEKYQSLVPQYSTPLLQAWQHNKI 766
Query: 334 SPYIIQHLMDQTQTGP---PIPQPAHQPNHITSPCPNSPNITSPPQSNPTSPIQQNLPPI 390
S + Q + P + +T P P S N S + N P+ + +
Sbjct: 767 SEISVPAAPVQLFSKPIDLNTYAGSQVTEQLTDPEPTSNNEGSDEEVN---PVAEEIAAN 823
Query: 391 FQPTLQANTKPITRSQHGIFKPNQKYYGLHTHVTKSPLPRNPVSALKDPNWKMAMNDEYN 450
+ + ++ TRS+ GI KPN + Y L T + P+ SA+K P W A+++E N
Sbjct: 824 QEQVINSHAM-TTRSKAGIQKPNTR-YALITSRMNTAEPKTLASAMKHPGWNEAVHEEIN 881
Query: 451 SLIKNKTWDLVPRPPDVNVIRSMWIFRHKEKSDGTFERHKARLVGDGAGQQVGIDCGETF 510
+ TW LVP D+N++ S W+F+ K DG+ ++ KARLV G Q+ G+D ETF
Sbjct: 882 RVHMLHTWSLVPPTDDMNILSSKWVFKTKLHPDGSIDKLKARLVAKGFDQEEGVDYLETF 941
Query: 511 SPM 513
SP+
Sbjct: 942 SPV 944
>At1g44510 polyprotein, putative
Length = 1459
Score = 201 bits (510), Expect = 2e-51
Identities = 138/425 (32%), Positives = 199/425 (46%), Gaps = 83/425 (19%)
Query: 170 ANGIVFRLSCPYTSSQNGKSERKIRSTNNIIRTLLIHASLPSSFWHHALEMATYLMNILP 229
+NGI S P+T NG SERK R TLL AS+P +W +A A YL+N +P
Sbjct: 612 SNGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLTQASVPREYWTYAFATAVYLINRMP 671
Query: 230 HKTINFESPLKVLYHKDPSYNHLRVFGCLCFPLFPSSKIYKLQPRSTKCVFLGYPSNHRG 289
+ +SP + L+ P+Y LRVFGCLCFP KL+ RS +CVFLGY
Sbjct: 672 TPVLCLQSPFQKLFGSSPNYQRLRVFGCLCFPWLRPYTRNKLEERSKRCVFLGYSLTQTA 731
Query: 290 YKCLGLLSNKIIICRHVLFNENIFPYAK----------LHIPQPNTYTFLDNELSPYIIQ 339
Y CL + +N++ RHV+F+E+ +P+A + P+ ++ + N P +
Sbjct: 732 YLCLDVDNNRLYTSRHVMFDESTYPFAASIREQSQSSLVTPPESSSSSSPANSGFPCSVL 791
Query: 340 HLMDQTQTGPPIPQPAHQ-------PNHITSPCPN------------SPNI-----TSP- 374
L + P P P Q P SP P+ SP++ T+P
Sbjct: 792 RLQSPPASSPETPSPPQQQNDSPVSPRQTGSPTPSHHSQVRDSTLSPSPSVSNSEPTAPH 851
Query: 375 ------------------------PQSNPTSPIQQN---------LPPIFQPTLQA---- 397
P++NP+S I+Q LPP Q T+ A
Sbjct: 852 ENGPEPEAQSNPNSPFIGPLPNPNPETNPSSSIEQRPVDKSTTTALPP-NQTTIAATSNS 910
Query: 398 -------NTKPITRSQHGIFKPNQKYYGLHTHVTKSPL--PRNPVSALKDPNWKMAMNDE 448
N + TRS++ I KP K L +T+ L P ALKD W+ AM+DE
Sbjct: 911 RSQPPKNNHQMKTRSKNNITKPKTK-TSLTVALTQPHLSEPNTVTQALKDKKWRFAMSDE 969
Query: 449 YNSLIKNKTWDLVPRPPDVNVIRSMWIFRHKEKSDGTFERHKARLVGDGAGQQVGIDCGE 508
+++ +N TWDLVP P +++ W+F+ K +G +++KARLV G QQ G+D E
Sbjct: 970 FDAQQRNHTWDLVPPNPTQHLVGCRWVFKLKYLPNGLIDKYKARLVAKGFNQQYGVDYAE 1029
Query: 509 TFSPM 513
TFSP+
Sbjct: 1030 TFSPV 1034
>At1g70010 hypothetical protein
Length = 1315
Score = 195 bits (496), Expect = 9e-50
Identities = 121/368 (32%), Positives = 177/368 (47%), Gaps = 37/368 (10%)
Query: 163 NFQKMCEANGIVFRLSCPYTSSQNGKSERKIRSTNNIIRTLLIHASLPSSFWHHALEMAT 222
NF + + GIV SCP T QN ERK + N+ R+L + +P S+W + A
Sbjct: 538 NFTQFYHSKGIVPYHSCPETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAV 597
Query: 223 YLMNILPHKTINFESPLKVLYHKDPSYNHLRVFGCLCFPLFPSSKIYKLQPRSTKCVFLG 282
YL+N LP + + P +VL P+Y+H++VFGCLC+ +K PR+ C F+G
Sbjct: 598 YLINRLPAPILEDKCPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIG 657
Query: 283 YPSNHRGYKCLGLLSNKIIICRHVLFNENIFPYAKLHIPQPNTYTFLDNELSPYIIQHLM 342
YPS +GYK L L ++ II+ RHV+F+E +FP+ + Q F D
Sbjct: 658 YPSGFKGYKLLDLETHSIIVSRHVVFHEELFPFLGSDLSQEEQNFFPDLN---------- 707
Query: 343 DQTQTGPPIPQPAHQPNHITSPCPNSPNITSPPQSNPTSPIQQNLPPIFQPTLQANTKP- 401
P P Q + +P +S ++ P +NPT+ + + P Q + + KP
Sbjct: 708 -------PTPPMQRQSSDHVNPSDSSSSVEILPSANPTNNVPE---PSVQTSHRKAKKPA 757
Query: 402 ----------ITRSQHGIFK------PNQKYYGLHTHVTKSPLPRNPVSALKDPNWKMAM 445
++ + H I K N Y + K+ P N A K W+ AM
Sbjct: 758 YLQDYYCHSVVSSTPHEIRKFLSYDRINDPYLTFLACLDKTKEPSNYTEAEKLQVWRDAM 817
Query: 446 NDEYNSLIKNKTWDLVPRPPDVNVIRSMWIFRHKEKSDGTFERHKARLVGDGAGQQVGID 505
E++ L TW++ P D I WIF+ K SDG+ ER+KARLV G Q+ GID
Sbjct: 818 GAEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGID 877
Query: 506 CGETFSPM 513
ETFSP+
Sbjct: 878 YNETFSPV 885
>At1g36620 hypothetical protein
Length = 1152
Score = 192 bits (487), Expect = 1e-48
Identities = 126/371 (33%), Positives = 187/371 (49%), Gaps = 36/371 (9%)
Query: 172 GIVFRLSCPYTSSQNGKSERKIRSTNNIIRTLLIHASLPSSFWHHALEMATYLMNILPHK 231
GIV ++SC YT QNG+ ERK R N+ R+LL A LP SFW ++ A YL+N P
Sbjct: 656 GIVHQISCVYTHQQNGRVERKHRHILNVARSLLFQAELPISFWEESVLTAAYLINRTPTP 715
Query: 232 TINFESPLKVLYHKDPSYNHLRVFGCLCFPLFPSSKIYKLQPRSTKCVFLGYPSNHRGYK 291
++ ++P K+LY + PSY LRVFG LCF + ++ K Q R KC+F+GYP +G++
Sbjct: 716 ILDGKTPYKILYSQPPSYASLRVFGSLCFARKHTGRLDKFQERGRKCIFVGYPHGQKGWR 775
Query: 292 CLGLLSNKIIICRHVLFNENIFPYAKLHIPQPNTYTF------LDNELSPYIIQHLMDQT 345
+ S + R V+F E+IFP+A + N TF + + + PY + L D
Sbjct: 776 IYDIESQIFFVSRDVVFQEDIFPFAD----KKNKDTFSSPAAVIPSPILPYDDEFL-DIY 830
Query: 346 QTGP-PIPQPAHQPNHITSPCPNSPNITSPPQSNPTSPI-------QQNLPPIFQPTLQA 397
Q G P P + P+SP IT+ P + P+ Q+N+ T A
Sbjct: 831 QIGDVPATNPLPAIIDVNDSPPSSPIITATPAAASPPPLRRGLRQRQENVRLKDYQTYSA 890
Query: 398 NTK--------------PITRSQHG-IFKPNQKYYGLHTHVTKSPLPRNPVSALKDPNWK 442
+ P+ G IF P+ +++ + P N A+++ W+
Sbjct: 891 QCESTQTLSDNIGTCIYPMANYVSGEIFSPSNQHFLAAISMVDPPQTYN--QAIREKEWR 948
Query: 443 MAMNDEYNSLIKNKTWDLVPRPPDVNVIRSMWIFRHKEKSDGTFERHKARLVGDGAGQQV 502
A+ E ++L TWD+ P V I S W+FR K S+GT ER+KARLV G Q+
Sbjct: 949 NAVFFEVDALEDQGTWDITKLPQGVKAIGSKWVFRIKYNSNGTVERYKARLVALGNHQKE 1008
Query: 503 GIDCGETFSPM 513
GID +TF+P+
Sbjct: 1009 GIDFTKTFAPV 1019
>At4g17450 retrotransposon like protein
Length = 1433
Score = 187 bits (475), Expect = 2e-47
Identities = 122/391 (31%), Positives = 188/391 (47%), Gaps = 37/391 (9%)
Query: 125 HINPKFIQYLKN*EHTSTHNFKEKLKQFNVTMAVNVNSNFQKMCEANGIVFRLSCPYTSS 184
H+ P FI + HT ++ KLK A + F + A+GIV SCP T
Sbjct: 646 HVFPAFINMV----HTQ---YQTKLKSVRSDNAHELK--FTDLFAAHGIVAYHSCPETPE 696
Query: 185 QNGKSERKIRSTNNIIRTLLIHASLPSSFWHHALEMATYLMNILPHKTINFESPLKVLYH 244
QN ERK + N+ R LL +++P FW + A +L+N LP +N +SP + L +
Sbjct: 697 QNSVVERKHQHILNVARALLFQSNIPLEFWGDCVLTAVFLINRLPTPVLNNKSPYEKLKN 756
Query: 245 KDPSYNHLRVFGCLCFPLFPSSKIYKLQPRSTKCVFLGYPSNHRGYKCLGLLSNKIIICR 304
P+Y L+ FGCLC+ + +K +PR+ CVFLGYP ++GYK L + ++ + I R
Sbjct: 757 IPPAYESLKTFGCLCYSSTSPKQRHKFEPRARACVFLGYPLGYKGYKLLDIETHAVSISR 816
Query: 305 HVLFNENIFPYAKLHIPQPNTYTFLDNELSPYIIQHLMDQTQTGPPIPQPAHQPNHITSP 364
HV+F+E+IFP+ I D P + PA + P
Sbjct: 817 HVIFHEDIFPFISSTIKD--------------------DIKDFFPLLQFPARTDD---LP 853
Query: 365 CPNSPNITSPPQSNPTSPIQQNLPPIFQPTLQANTKPITRSQ--HGIFKPNQKYYGLHTH 422
+ I + P + +S + L P F P + KP Q H + ++ +
Sbjct: 854 LEQTSIIDTHPHQDVSS--SKALVP-FDPLSKRQKKPPKHLQDFHCYNNTTEPFHAFINN 910
Query: 423 VTKSPLPRNPVSALKDPNWKMAMNDEYNSLIKNKTWDLVPRPPDVNVIRSMWIFRHKEKS 482
+T + +P+ A W AM +E ++++ TW +V PP+ I W+F K +
Sbjct: 911 ITNAVIPQRYSEAKDFKAWCDAMKEEIGAMVRTNTWSVVSLPPNKKAIGCKWVFTIKHNA 970
Query: 483 DGTFERHKARLVGDGAGQQVGIDCGETFSPM 513
DG+ ER+KARLV G Q+ G+D ETFSP+
Sbjct: 971 DGSIERYKARLVAKGYTQEEGLDYEETFSPV 1001
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 182 bits (463), Expect = 6e-46
Identities = 121/388 (31%), Positives = 183/388 (46%), Gaps = 28/388 (7%)
Query: 128 PKFIQYLKN*EHTSTHNFKEKLKQFNVTMAVNVNSNFQKMCEANGIVFRLSCPYTSSQNG 187
P FIQ ++N +K K+K A + F GIV SCP T QN
Sbjct: 663 PAFIQQVEN-------QYKVKVKAVRSDNAPELK--FTSFYAEKGIVSFHSCPETPEQNS 713
Query: 188 KSERKIRSTNNIIRTLLIHASLPSSFWHHALEMATYLMNILPHKTINFESPLKVLYHKDP 247
ERK + N+ R L+ + +P S W + A +L+N P + + ++P ++L P
Sbjct: 714 VVERKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAP 773
Query: 248 SYNHLRVFGCLCFPLFPSSKIYKLQPRSTKCVFLGYPSNHRGYKCLGLLSNKIIICRHVL 307
Y LR FGCLC+ + +K QPRS C+FLGYPS ++GYK + L SN + I R+V
Sbjct: 774 VYEQLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYKLMDLESNTVFISRNVQ 833
Query: 308 FNENIFPYAKLHIPQPNTYTFLDNELSPYIIQHLMDQTQTGPPIPQPAHQPNHITS--PC 365
F+E +FP AK P + L + P + D T + P+ P+ I+ P
Sbjct: 834 FHEEVFPLAK--NPGSESSLKLFTPMVPVSSGIISDTTHS------PSSLPSQISDLPPQ 885
Query: 366 PNSPNITSPPQSNPTSPIQQNLPPIFQPTLQANTKPITRSQHGIFKPNQKYYGLHTHVTK 425
+S + PP +L T+Q++ K S K + + ++TK
Sbjct: 886 ISSQRVRKPP---------AHLNDYHCNTMQSDHKYPISSTISYSKISPSHMCYINNITK 936
Query: 426 SPLPRNPVSALKDPNWKMAMNDEYNSLIKNKTWDLVPRPPDVNVIRSMWIFRHKEKSDGT 485
P+P N A W A++ E ++ K TW++ P + W+F K +DG
Sbjct: 937 IPIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGN 996
Query: 486 FERHKARLVGDGAGQQVGIDCGETFSPM 513
ER+KARLV G Q+ G+D +TFSP+
Sbjct: 997 LERYKARLVAKGYTQKEGLDYTDTFSPV 1024
>At1g57640
Length = 1444
Score = 179 bits (453), Expect = 9e-45
Identities = 123/388 (31%), Positives = 175/388 (44%), Gaps = 46/388 (11%)
Query: 172 GIVFRLSCPYTSSQNGKSERKIRSTNNIIRTLLIHASLPSSFWHHALEMATYLMNILPHK 231
GI SC T QNG+ ERK R NI R L + LP FW + A YL+N P
Sbjct: 632 GIAHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLINRTPSM 691
Query: 232 TINFESPLKVLYHKDPSYNHLRVFGCLCFPLFPSSKIYKLQPRSTKCVFLGYPSNHRGYK 291
+ +SP ++LY P Y+HLRVFG LC+ + K K RS +CVF+GYP +G++
Sbjct: 692 LLQGKSPYEMLYKTAPKYSHLRVFGSLCYAHNQNHKGDKFAARSRRCVFVGYPHGQKGWR 751
Query: 292 CLGLLSNKIIICRHVLFNENIFPYAKLHIPQPNTYTFLDNELSPYIIQHLMDQT------ 345
L K + R V+F E FPY+K+ + + +D P+I + + +T
Sbjct: 752 LFDLEEQKFFVSRDVIFQETEFPYSKMSCNEEDERVLVDCVGPPFIEEAIGPRTIIGRNI 811
Query: 346 ---------QTGPPIP---QPAHQPNHITSPCPNSPNITS--------PPQSNPTSPIQ- 384
TGP IP Q + P+ S P + S P S +PIQ
Sbjct: 812 GEATVGPNVATGPIIPEINQESSSPSEFVSLSSLDPFLASSTVQTADLPLSSTTPAPIQL 871
Query: 385 -----QNLPPIFQPTLQANTKPI----TRSQHGIFKPNQKYYGLH----------THVTK 425
Q P+ NT + + P +KY H VT
Sbjct: 872 RRSSRQTQKPMKLKNFVTNTVSVESISPEASSSSLYPIEKYVDCHRFTSSHKAFLAAVTA 931
Query: 426 SPLPRNPVSALKDPNWKMAMNDEYNSLIKNKTWDLVPRPPDVNVIRSMWIFRHKEKSDGT 485
P A+ D W+ AM+ E SL N+T+ +V PP + + W+++ K +SDG
Sbjct: 932 GMEPTTYNEAMVDKAWREAMSAEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGA 991
Query: 486 FERHKARLVGDGAGQQVGIDCGETFSPM 513
ER+KARLV G Q+ G+D ETF+P+
Sbjct: 992 IERYKARLVVLGNCQKEGVDYDETFAPV 1019
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 174 bits (441), Expect = 2e-43
Identities = 114/360 (31%), Positives = 176/360 (48%), Gaps = 39/360 (10%)
Query: 164 FQKMCEANGIVFRLSCPYTSSQNGKSERKIRSTNNIIRTLLIHASLPSSFWHHALEMATY 223
F + +A GIV SCP T QN ERK + N+ R L+ +++ +W + A +
Sbjct: 701 FTEFYKAKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVF 760
Query: 224 LMNILPHKTINFESPLKVLYHKDPSYNHLRVFGCLCFPLFPSSKIYKLQPRSTKCVFLGY 283
L+N P ++ ++P +VL K P Y+ L+ FGCLC+ S + +K PRS CVFLGY
Sbjct: 761 LINRTPSALLSNKTPFEVLTGKLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGY 820
Query: 284 PSNHRGYKCLGLLSNKIIICRHVLFNENIFPYAKLHIPQPNTYTFLDNELSPYIIQHLMD 343
P +GYK L L SN + I R+V F+E +FP A + T + +P MD
Sbjct: 821 PFGFKGYKLLDLESNVVHISRNVEFHEELFPLAS----SQQSATTASDVFTP------MD 870
Query: 344 QTQTGPPIPQPAHQPNHITSPCPNSPNITSPPQSNPTSPIQQNLPPIFQPTLQ------- 396
+G N ITS P+ PQ +P++ I + F LQ
Sbjct: 871 PLSSG----------NSITSHLPS-------PQISPSTQISKRRITKFPAHLQDYHCYFV 913
Query: 397 --ANTKPITRS-QHGIFKPNQKYYGLHTHVTKSPLPRNPVSALKDPNWKMAMNDEYNSLI 453
++ PI+ S + P+ Y +++K P+P++ A W A++ E ++
Sbjct: 914 NKDDSHPISSSLSYSQISPSHMLY--INNISKIPIPQSYHEAKDSKEWCGAIDQEIGAME 971
Query: 454 KNKTWDLVPRPPDVNVIRSMWIFRHKEKSDGTFERHKARLVGDGAGQQVGIDCGETFSPM 513
+ TW++ PP + W+F K +DG+ ER KAR+V G Q+ G+D ETFSP+
Sbjct: 972 RTDTWEITSLPPGKKAVGCKWVFTVKFHADGSLERFKARIVAKGYTQKEGLDYTETFSPV 1031
>At4g07810 putative polyprotein
Length = 1366
Score = 172 bits (437), Expect = 6e-43
Identities = 118/384 (30%), Positives = 179/384 (45%), Gaps = 42/384 (10%)
Query: 164 FQKMCEANGIVFRLSCPYTSSQNGKSERKIRSTNNIIRTLLIHASLPSSFWHHALEMATY 223
F+ + GI SC YT QN ER + N+ R+L +++P ++W + A +
Sbjct: 598 FKDLLATFGIFHYHSCAYTPQQNYVVERNHQHLLNVARSLYFQSNIPLAYWPECVSTAAF 657
Query: 224 LMNILPHKTINFESPLKVLYHKDPSYNHLRVFGCLCFPLFPSSKIYKLQPRSTKCVFLGY 283
L+N P + +SP +VLY K P YN LRVF CLC+ + +K R+T CVF+GY
Sbjct: 658 LINRTPTPNLEHKSPYEVLYKKLPDYNSLRVFCCLCYASTHQHERHKFTERATSCVFIGY 717
Query: 284 PSNHRGYKCLGLLSNKIIICRHVLFNENIFPYAKLHIPQPNTYTFLDNELSPYIIQHLMD 343
S +GYK L L SN + + R+V+F+E IFP+ H Q +F D+ + P + +
Sbjct: 718 ESGFKGYKILDLESNTVSVTRNVVFHETIFPFIDKHSTQ--NVSFFDDSVLPISEKQKEN 775
Query: 344 QTQTGP----------PIPQPAHQP--NHITSPCPNSPNITSP----PQSNPTSPIQQNL 387
+ Q P+ +P P H S P S +T+ N P ++
Sbjct: 776 RFQIYDYFNVLNLEVCPVIEPTTVPAHTHTRSLAPLSTTVTNDQFGNDMDNTLMPRKETR 835
Query: 388 PPIFQPTLQANT--KPITRSQHGIFKPNQKYYGLHTHVTKSPLPRN------PVSALKDP 439
P + + K + S HG + L +H++ L + A K+P
Sbjct: 836 APSYLSQYHCSNVLKEPSSSLHG------TAHSLSSHLSYDKLSNEYRLFCFAIIAEKEP 889
Query: 440 ----------NWKMAMNDEYNSLIKNKTWDLVPRPPDVNVIRSMWIFRHKEKSDGTFERH 489
W AMN E ++L+ T ++ I W+F+ K KSDGT ER+
Sbjct: 890 TTFKEAALLQKWLDAMNVELDALVSTSTREICSLHDGKRAIGCKWVFKIKYKSDGTIERY 949
Query: 490 KARLVGDGAGQQVGIDCGETFSPM 513
KARLV +G QQ G+D +TFSP+
Sbjct: 950 KARLVANGYTQQEGVDYIDTFSPI 973
>At1g26990 polyprotein, putative
Length = 1436
Score = 167 bits (424), Expect = 2e-41
Identities = 115/359 (32%), Positives = 162/359 (45%), Gaps = 21/359 (5%)
Query: 164 FQKMCEANGIVFRLSCPYTSSQNGKSERKIRSTNNIIRTLLIHASLPSSFWHHALEMATY 223
F ++ GI CP T QN ERK + N+ R L+ + +P +W + A +
Sbjct: 691 FNELFAKEGIKADHPCPETPEQNFVVERKHQHLLNVARALMFQSGIPLEYWGDCVLTAVF 750
Query: 224 LMNILPHKTINFESPLKVLYHKDPSYNHLRVFGCLCFPLFPSSKIYKLQPRSTKCVFLGY 283
L+N L IN E+P + L P Y+ L+ FGCLC+ K PR+ C+FLGY
Sbjct: 751 LINRLLSPVINNETPYERLTKGKPDYSSLKAFGCLCYCSTSPKSRTKFDPRAKACIFLGY 810
Query: 284 PSNHRGYKCLGLLSNKIIICRHVLFNENIFPYAKLHIPQPNTYTFLDNELSPYIIQHLMD 343
P ++GYK L + + + I RHV+F E+IFP+A +I T + P+I +
Sbjct: 811 PMGYKGYKLLDIETYSVSISRHVIFYEDIFPFASSNI------TDAAKDFFPHIYLPAPN 864
Query: 344 QTQTGPPIPQPAHQP-NHITSPCPNSPNITSPPQSNPTSPIQQNLPPIFQPTLQANTKPI 402
+ P + + P NH S S I P S P S Q+ LP Q N P
Sbjct: 865 NDEHLPLVQSSSDAPHNHDES----SSMIFVP--SEPKSTRQRKLPSHLQDFHCYNNTPT 918
Query: 403 TRSQHGIFKPNQKYYGLHTH--------VTKSPLPRNPVSALKDPNWKMAMNDEYNSLIK 454
T N Y + +T + LP+ A D W AM E ++ ++
Sbjct: 919 TTKTSPYPLTNYISYSYLSEPFGAFINIITATKLPQKYSEARLDKVWNDAMGKEISAFVR 978
Query: 455 NKTWDLVPRPPDVNVIRSMWIFRHKEKSDGTFERHKARLVGDGAGQQVGIDCGETFSPM 513
TW + P + WI K +DG+ ERHKARLV G QQ GID TFSP+
Sbjct: 979 TGTWSICDLPAGKVAVGCKWIITIKFLADGSIERHKARLVAKGYTQQEGIDFFNTFSPV 1037
>At3g61330 copia-type polyprotein
Length = 1352
Score = 162 bits (411), Expect = 6e-40
Identities = 106/354 (29%), Positives = 167/354 (46%), Gaps = 35/354 (9%)
Query: 161 NSNFQKMCEANGIVFRLSCPYTSSQNGKSERKIRSTNNIIRTLLIHASLPSSFWHHALEM 220
+ F K CE NGI +L+ P + QNG ERK R+ + R++L LP W A+
Sbjct: 603 SKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVAC 662
Query: 221 ATYLMNILPHKTINFESPLKVLYHKDPSYNHLRVFGCLCFPLFPSSKIYKLQPRSTKCVF 280
A YL+N P K+++ ++P + + P +HLRVFG + P K KL +S K +F
Sbjct: 663 AVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIF 722
Query: 281 LGYPSNHRGYKCLGLLSNKIIICRHVLFNENIFPYAKLHIPQPNTYTFLDNELSPYIIQH 340
+GY +N +GYK + K II R+++F+E + + NE H
Sbjct: 723 IGYDNNSKGYKLYNPDTKKTIISRNIVFDEE------------GEWDWNSNEEDYNFFPH 770
Query: 341 LMDQTQTGPPIPQPAHQPNHITSPCPNSPNITSPPQSNPTSPIQQNLPPIFQPTLQANTK 400
+ P+P + P S T+PP S +S I+++ +
Sbjct: 771 FEEDE------PEPTREE-------PPSEEPTTPPTSPTSSQIEES---------SSERT 808
Query: 401 PITRSQHGIFKPNQKYYGLHTHVTKSPL-PRNPVSALKDPNWKMAMNDEYNSLIKNKTWD 459
P RS +++ + L + P + A++ W+ AM++E S+ KN TW+
Sbjct: 809 PRFRSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWE 868
Query: 460 LVPRPPDVNVIRSMWIFRHKEKSDGTFERHKARLVGDGAGQQVGIDCGETFSPM 513
L P I W+++ K+ S G ER+KARLV G Q+VGID E F+P+
Sbjct: 869 LTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPV 922
>At2g07550 putative retroelement pol polyprotein
Length = 1356
Score = 162 bits (411), Expect = 6e-40
Identities = 117/362 (32%), Positives = 170/362 (46%), Gaps = 19/362 (5%)
Query: 161 NSNFQKMCEANGIVFRLSCPYTSSQNGKSERKIRSTNNIIRTLLIHASLPSSFWHHALEM 220
N F CE+ GI +C YT QNG +ER R+ +R++L + LP FW A
Sbjct: 574 NKLFDGFCESIGIHRHRTCAYTPQQNGVAERMNRTIMEKVRSMLSDSGLPKRFWAEATHT 633
Query: 221 ATYLMNILPHKTINFESPLKVLYHKDPSYNHLRVFGCLCFPLFPSSKIYKLQPRSTKCVF 280
L+N P +NFE P K P Y++LR +GC+ F KL+PR+ K V
Sbjct: 634 TVLLINKTPSSALNFEIPDKKWSGNPPVYSYLRRYGCVAFVHTDDG---KLEPRAKKGVL 690
Query: 281 LGYPSNHRGYKCLGLLSNKIIICRHVLFNENIFPYAKLHIPQPNTYTFLDNELSPYIIQH 340
+GYP +GYK L K ++ R+++F EN Y L Q N T D++ Y+
Sbjct: 691 IGYPVGVKGYKVWILDERKCVVSRNIIFQENAV-YKDLMQRQENVSTEEDDQTGSYLEFD 749
Query: 341 LMDQTQTGPPIPQPAHQPNHITSPCPNSPNITSP--PQSNPTSPIQQNLPPIFQPTLQAN 398
L + + Q T P P SP +++P +N N P+ ++
Sbjct: 750 L----EAERDVISGGDQEMVNTIPAPESPVVSTPTTQDTNDDEDSDVNQSPLSYHLVRDR 805
Query: 399 TKPITRSQHGIFKPNQKYYGLHTHVT---KSPLPRNPVSALKDPN---WKMAMNDEYNSL 452
K R+ ++ YY + T ++ P N A D N WK+AM++E +S
Sbjct: 806 DKREIRAPRRF--DDEDYYAEALYTTEDGEAVEPENYRKAKLDANFDKWKLAMDEEIDSQ 863
Query: 453 IKNKTWDLVPRPPDVNVIRSMWIFRHKEKSDGTFE-RHKARLVGDGAGQQVGIDCGETFS 511
KN TW +V RP + +I WIF++K G E R KARLV G Q+ GID E F+
Sbjct: 864 EKNNTWTIVTRPENQRIIGCRWIFKYKLGILGVEEPRFKARLVAKGYAQKEGIDYHEIFA 923
Query: 512 PM 513
P+
Sbjct: 924 PV 925
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 162 bits (409), Expect = 1e-39
Identities = 105/354 (29%), Positives = 167/354 (46%), Gaps = 35/354 (9%)
Query: 161 NSNFQKMCEANGIVFRLSCPYTSSQNGKSERKIRSTNNIIRTLLIHASLPSSFWHHALEM 220
+ F K CE NGI +L+ P + QNG +ERK R+ + R++L LP W A+
Sbjct: 603 SKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVAC 662
Query: 221 ATYLMNILPHKTINFESPLKVLYHKDPSYNHLRVFGCLCFPLFPSSKIYKLQPRSTKCVF 280
A YL+N P K+++ ++P + + P +HLRVFG + P K KL +S K +F
Sbjct: 663 AVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIF 722
Query: 281 LGYPSNHRGYKCLGLLSNKIIICRHVLFNENIFPYAKLHIPQPNTYTFLDNELSPYIIQH 340
+GY +N +GYK + K II R+++F+E + + NE H
Sbjct: 723 IGYDNNSKGYKLYNPDTKKTIISRNIVFDEE------------GEWDWNSNEEDYNFFPH 770
Query: 341 LMDQTQTGPPIPQPAHQPNHITSPCPNSPNITSPPQSNPTSPIQQNLPPIFQPTLQANTK 400
+ P+P + P S T+PP S +S I+++ +
Sbjct: 771 FEEDK------PEPTREE-------PPSEEPTTPPTSPTSSQIEES---------SSERT 808
Query: 401 PITRSQHGIFKPNQKYYGLHTHVTKSPL-PRNPVSALKDPNWKMAMNDEYNSLIKNKTWD 459
P RS +++ + L + P + A++ W+ AM++E S+ KN TW+
Sbjct: 809 PRFRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWE 868
Query: 460 LVPRPPDVNVIRSMWIFRHKEKSDGTFERHKARLVGDGAGQQVGIDCGETFSPM 513
L P I W+++ K+ S G ER+KARLV G Q+ GID E F+P+
Sbjct: 869 LTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPV 922
>At1g48710 hypothetical protein
Length = 1352
Score = 157 bits (398), Expect = 2e-38
Identities = 104/354 (29%), Positives = 166/354 (46%), Gaps = 35/354 (9%)
Query: 161 NSNFQKMCEANGIVFRLSCPYTSSQNGKSERKIRSTNNIIRTLLIHASLPSSFWHHALEM 220
+ F K CE NGI +L+ P + QNG +ERK R+ + R++L LP W A+
Sbjct: 603 SKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVAC 662
Query: 221 ATYLMNILPHKTINFESPLKVLYHKDPSYNHLRVFGCLCFPLFPSSKIYKLQPRSTKCVF 280
A YL+N P K+++ ++P + + +HLRVFG + P K KL +S K +F
Sbjct: 663 AVYLLNRSPTKSVSGKTPQEAWSGRKSGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIF 722
Query: 281 LGYPSNHRGYKCLGLLSNKIIICRHVLFNENIFPYAKLHIPQPNTYTFLDNELSPYIIQH 340
+GY +N +GYK + K II R+++F+E + + NE H
Sbjct: 723 IGYDNNSKGYKLYNPDTKKTIISRNIVFDEE------------GEWDWNSNEEDYNFFPH 770
Query: 341 LMDQTQTGPPIPQPAHQPNHITSPCPNSPNITSPPQSNPTSPIQQNLPPIFQPTLQANTK 400
+ P+P + P S T+PP S +S I+++ +
Sbjct: 771 FEEDE------PEPTREE-------PPSEEPTTPPTSPTSSQIEES---------SSERT 808
Query: 401 PITRSQHGIFKPNQKYYGLHTHVTKSPL-PRNPVSALKDPNWKMAMNDEYNSLIKNKTWD 459
P RS +++ + L + P + A++ W+ AM++E S+ KN TW+
Sbjct: 809 PRFRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWE 868
Query: 460 LVPRPPDVNVIRSMWIFRHKEKSDGTFERHKARLVGDGAGQQVGIDCGETFSPM 513
L P I W+++ K+ S G ER+KARLV G Q+ GID E F+P+
Sbjct: 869 LTSLPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGIDYDEVFAPV 922
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 155 bits (392), Expect = 1e-37
Identities = 125/398 (31%), Positives = 182/398 (45%), Gaps = 27/398 (6%)
Query: 129 KFIQYLKN*EHTSTHNFKEKLKQFNVTMAVNVNSNFQKMCEANGIVFRLSCPYTSSQNGK 188
KF+++ K E+ S K KL+ N N F+K C+ GIV +C YT QNG
Sbjct: 521 KFVEWKKMVENQSDRKVK-KLRTDNGLEYCN--HYFEKFCKEEGIVRHKTCAYTPQQNGI 577
Query: 189 SERKIRSTNNIIRTLLIHASLPSSFWHHALEMATYLMNILPHKTINFESPLKVLYHKDPS 248
+ER R+ + +R++L + + FW A A YL+N P INF+ P + P
Sbjct: 578 AERLNRTIMDKVRSMLSRSGMEKKFWAEAASTAVYLINRSPSTAINFDLPEEKWTGALPD 637
Query: 249 YNHLRVFGCLCFPLFPSSKIYKLQPRSTKCVFLGYPSNHRGYKCLGLLSNKIIICRHVLF 308
+ LR FGCL + KL PRS K +F YP +GYK L K +I R+V+F
Sbjct: 638 LSSLRKFGCLAYIHADQG---KLNPRSKKGIFTSYPEGVKGYKVWVLEDKKCVISRNVIF 694
Query: 309 NENIFPYAKLHIPQPNTYTFLDNELSPYIIQHLMDQTQTGP-PIPQPAHQPNHITSPCPN 367
E + + L NT + D E + + DQ T Q P+ T+ +
Sbjct: 695 REQVM-FKDLKGDSQNTISESDLE-DLRVNPDMNDQEFTDQGGATQDNSNPSEATT--SH 750
Query: 368 SPNITSPPQSNPTSPIQQNLPPIFQ-PTLQANTKPITRSQHGIFKPNQKY-------YGL 419
+P + SP S +++ + T Q + R+ K N KY +
Sbjct: 751 NPVLNSPTHSQDEESEEEDSDAVEDLSTYQLVRDRVRRT----IKANPKYNESNMVGFAY 806
Query: 420 HTHVTKSPLPRNPVSALKDPNWK---MAMNDEYNSLIKNKTWDLVPRPPDVNVIRSMWIF 476
++ P P++ AL DP+W+ AM +E S+ KN TWDLV +P V +I W+F
Sbjct: 807 YSEDDGKPEPKSYQEALLDPDWEKWNAAMKEEMVSMSKNHTWDLVTKPEKVKLIGCRWVF 866
Query: 477 RHKEKSDGT-FERHKARLVGDGAGQQVGIDCGETFSPM 513
K G R ARLV G Q+ G+D E FSP+
Sbjct: 867 TRKAGIPGVEAPRFIARLVAKGFTQKEGVDYNEIFSPV 904
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 154 bits (390), Expect = 2e-37
Identities = 119/407 (29%), Positives = 181/407 (44%), Gaps = 45/407 (11%)
Query: 150 KQFNVTMAVNVNSN------FQKMCEANGIVFRLSCPYTSSQNGKSERKIRSTNNIIRTL 203
+QFNV + + N K + G++ SC T +N + ERK R N+ R L
Sbjct: 504 RQFNVKIKTVRSDNGTEFLCLTKFFQEQGVIHERSCVATPERNDRVERKHRHLLNVARAL 563
Query: 204 LIHASLPSSFWHHALEMATYLMNILPHKTINFESPLKVLYHKDPSYNHLRVFGCLCFPLF 263
A+LP FW + A YL+N P +N +P + L+ K P ++HLRVFG LC+
Sbjct: 564 RFQANLPIQFWGECVLTAAYLINRTPSSVLNDSTPYERLHKKQPRFDHLRVFGSLCYAHN 623
Query: 264 PSSKIYKLQPRSTKCVFLGYPSNHRGYKCLGLLSNKIIICRHVLFNENIFPYAKLHIPQP 323
+ K RS +CVF+GYP +G++ L N+ + R V+F+E FP+ H +
Sbjct: 624 RNRGGDKFAERSRRCVFVGYPHGQKGWRLFDLEQNEFFVSRDVVFSELEFPFRISH--EQ 681
Query: 324 NTYTFLDNELSPYIIQHLMDQT-----QTGPPIPQPAHQPNHITSPCPNSPNITSPP--- 375
N + L I+ L+++ GP P P ++ S + TS P
Sbjct: 682 NVIEEEEEALWAPIVDGLIEEEVHLGQNAGPTPPICVSSPISPSATSSRSEHSTSSPLDT 741
Query: 376 ------------QSNPTSPIQQNLPPIFQP---TLQANTKPITRSQHGIFKPNQ------ 414
S+P+SP P+ + T QA P N+
Sbjct: 742 EVVPTPATSTTSASSPSSPTNLQFLPLSRAKPTTAQAVAPPAVPPPRRQSTRNKAPPVTL 801
Query: 415 KYYGLHTHVTK-SPLPRNPV----SALKDPNWKMAMNDEYNSLI---KNKTWDLVPRPPD 466
K + ++T V + SP N + D A + Y ++ +N TW + PP
Sbjct: 802 KDFVVNTTVCQESPSKLNSILYQLQKRDDTRRFSASHTTYVAIDAQEENHTWTIEDLPPG 861
Query: 467 VNVIRSMWIFRHKEKSDGTFERHKARLVGDGAGQQVGIDCGETFSPM 513
I S W+++ K SDG+ ER+KARLV G Q+ G D GETF+P+
Sbjct: 862 KRAIGSQWVYKVKHNSDGSVERYKARLVALGNKQKEGEDYGETFAPV 908
>At2g15650 putative retroelement pol polyprotein
Length = 1347
Score = 153 bits (387), Expect = 4e-37
Identities = 103/350 (29%), Positives = 165/350 (46%), Gaps = 20/350 (5%)
Query: 168 CEANGIVFRLSCPYTSSQNGKSERKIRSTNNIIRTLLIHASLPSSFWHHALEMATYLMNI 227
CE GI +++ PY+ QNG +ERK RS + R++L+ LP W A+ + YL N
Sbjct: 588 CEDEGINRQVTLPYSPQQNGAAERKNRSLVEMARSMLVEQDLPLKLWAEAVYTSAYLQNR 647
Query: 228 LPHKTINFE-SPLKVLYHKDPSYNHLRVFGCLCFPLFPSSKIYKLQPRSTKCVFLGYPSN 286
LP K I + +P++ P+ +HLR+FG +C+ P K KL ++ + +GY +
Sbjct: 648 LPSKAIEDDVTPMEKWCGHKPNVSHLRIFGSICYVHIPDQKRRKLDAKAKCGILIGYSNQ 707
Query: 287 HRGYKCLGLLSNKIIICRHVLFNENIFPYAKLHIPQPNTYTFLDNELSPYIIQHLMDQTQ 346
+GY+ L K+ + R V+F E+ T+ N+ IQ DQ +
Sbjct: 708 TKGYRVFLLEDEKVEVSRDVVFQEDKKWDWDKQEEVKKTFVMSIND-----IQESRDQQE 762
Query: 347 TGPPIPQPAHQPNHITSPCPNSPNITSP---PQSNPTSPIQQNLPPIFQPTLQANTKPIT 403
T +H + I N TS Q N + + P +++ +
Sbjct: 763 TS------SHDLSQIDDHANNGEGETSSHVLSQVNDQEERETSESPKKYKSMKEILEKAP 816
Query: 404 RSQHGIFKPNQKYYGLHTHVTKSPLPRNPVSALKDPNWKMAMNDEYNSLIKNKTWDLVPR 463
R ++ ++ G+ + + P+ A D W+ AMN+E + KN+TW LV +
Sbjct: 817 RMEN-----DEAAQGIEACLVANEEPQTYDEARGDKEWEEAMNEEIKVIEKNRTWKLVDK 871
Query: 464 PPDVNVIRSMWIFRHKEKSDGTFERHKARLVGDGAGQQVGIDCGETFSPM 513
P NVI WI++ K + G +HKARLV G Q+ GID ETF+P+
Sbjct: 872 PEKKNVISVKWIYKIKTDASGNHVKHKARLVARGFSQEYGIDYLETFAPV 921
>At1g32590 hypothetical protein, 5' partial
Length = 1263
Score = 153 bits (387), Expect = 4e-37
Identities = 104/359 (28%), Positives = 158/359 (43%), Gaps = 32/359 (8%)
Query: 164 FQKMCEANGIVFRLSCPYTSSQNGKSERKIRSTNNIIRTLLIHASLPSSFWHHALEMATY 223
F + C+ GI +L+ YT QNG +ERK RS N+ R +L+ S+P FW A++ A Y
Sbjct: 536 FDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVY 595
Query: 224 LMNILPHKTINFESPLKVLYHKDPSYNHLRVFGCLCFPLFPSSKIYKLQPRSTKCVFLGY 283
++N P K +N +P + PS HLR+FG L + L P K KL +S KCV G
Sbjct: 596 ILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCVMFGV 655
Query: 284 PSNHRGYKCLGLLSNKIIICRHVLFNENIFPYAKLHIPQPNTYTFLDNELSPYIIQHLMD 343
+ Y+ + KI+I R V F+E + + D L ++ D
Sbjct: 656 SKESKAYRLYDPATGKILISRDVQFDEE------------RGWEWEDKSLEEELVWDNSD 703
Query: 344 QTQTGPPIPQPAHQPNHITSPCPNSPNITSPPQSNPTSPIQQNLPPIFQPTLQANTKPIT 403
G P+ H T + + QNLP + ++ +P+
Sbjct: 704 HEPAGEEGPEINHNGQ-------QDQEETEEEEETVAETVHQNLPAVGTGGVRQRQQPVW 756
Query: 404 RSQHGIFKPNQKYYGLHTHVTKSPL------PRNPV---SALKDPNWKMAMNDEYNSLIK 454
+ + L T + + P +PV A + W+ AM E S+ +
Sbjct: 757 MKDYVVGNARV----LITQDEEDEVLALFIGPDDPVCFEEAAQLEVWRKAMEAEITSIEE 812
Query: 455 NKTWDLVPRPPDVNVIRSMWIFRHKEKSDGTFERHKARLVGDGAGQQVGIDCGETFSPM 513
N TW+LV P + VI WIF+ K G ++ KARLV G Q+ G+D E F+P+
Sbjct: 813 NNTWELVELPEEAKVIGLKWIFKTKFNEKGEVDKFKARLVAKGYHQRYGVDFYEVFAPV 871
>At3g45520 copia-like polyprotein
Length = 1363
Score = 150 bits (379), Expect = 3e-36
Identities = 116/364 (31%), Positives = 163/364 (43%), Gaps = 23/364 (6%)
Query: 161 NSNFQKMCEANGIVFRLSCPYTSSQNGKSERKIRSTNNIIRTLLIHASLPSSFWHHALEM 220
N F CE G +C YT QNG ER R+ +R++L + LP FW A
Sbjct: 581 NRMFDGFCEEKGFQRHRTCAYTPQQNGVVERMNRTIMEKVRSMLCDSGLPKRFWAEATHT 640
Query: 221 ATYLMNILPHKTINFESPLKVLYHKDPSYNHLRVFGCLCFPLFPSSKIYKLQPRSTKCVF 280
A L+N P INFE P K K P Y++LR +GC+ F KL R+ K V
Sbjct: 641 AVLLINKTPCSAINFEFPDKRWSGKAPIYSYLRRYGCVTFVHTDGG---KLNLRAKKGVL 697
Query: 281 LGYPSNHRGYKCLGLLSNKIIICRHVLFNENIFPYAKLHIPQPNTYTFLDNELSPYIIQH 340
+GYPS +GYK + K ++ R+V F EN Y L + D+ YI
Sbjct: 698 IGYPSGVKGYKVWLIEEKKCVVSRNVSFQENAV-YKDLMQRKEQVSCEEDDHAGSYIDLD 756
Query: 341 LMDQTQTGPPIPQPAHQPNHITSPCPNSPNITSPPQSNPTSPIQQNLPPIFQPTLQANTK 400
L Q Q T +TS P T I++ + Q L +
Sbjct: 757 LEADKDNSSGGEQSQAQVTPATRGA-----VTSTPPRYETDDIEET--DVHQSPLSYHLV 809
Query: 401 PITRSQHGIFKP----NQKYYGLHTHVTK---SPLPRNPVSALKDPN---WKMAMNDEYN 450
R + I P ++ YY + T+ + P + A++D N W++AMN+E
Sbjct: 810 R-DRERREIRAPRRFDDEDYYAEALYTTEDGDAVEPADYKEAVRDENWDKWRLAMNEEIE 868
Query: 451 SLIKNKTWDLVPRPPDVNVIRSMWIFRHKEKSDGTFE-RHKARLVGDGAGQQVGIDCGET 509
S +KN TW V RP +I S WI+++K+ G E R KARLV G Q+ G+D E
Sbjct: 869 SQLKNDTWTTVTRPEKQRIIGSRWIYKYKQGIPGVEEPRFKARLVAKGYAQREGVDYHEI 928
Query: 510 FSPM 513
F+P+
Sbjct: 929 FAPV 932
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.337 0.147 0.487
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,232,821
Number of Sequences: 26719
Number of extensions: 945545
Number of successful extensions: 5230
Number of sequences better than 10.0: 175
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 3868
Number of HSP's gapped (non-prelim): 831
length of query: 952
length of database: 11,318,596
effective HSP length: 109
effective length of query: 843
effective length of database: 8,406,225
effective search space: 7086447675
effective search space used: 7086447675
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 65 (29.6 bits)
Medicago: description of AC146853.2