BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146842.3 + phase: 0 /pseudo
         (57 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g17330 glutamate decarboxylase 1 (GAD 1) (sp|Q42521)                73  3e-14
At2g02010 putative glutamate decarboxylase                             72  4e-14
At1g65960 unknown protein                                              72  4e-14
At2g02000 glutamate decarboxylase like protein                         72  5e-14
At3g17760 glutamate decarboxylase, putative                            69  3e-13
At1g27980 unknown protein                                              27  1.5
At3g26730 RING zinc finger like protein                                25  9.6
At1g47910 reverse transcriptase, putative                              25  9.6

>At5g17330 glutamate decarboxylase 1 (GAD 1) (sp|Q42521)
          Length = 502

 Score = 72.8 bits (177), Expect = 3e-14
 Identities = 32/37 (86%), Positives = 32/37 (86%)

Query: 17  FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
           F Y  LEWDFRLPLVKSINVSGHKYGL Y GIGWVIW
Sbjct: 254 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIW 290


>At2g02010 putative glutamate decarboxylase
          Length = 493

 Score = 72.4 bits (176), Expect = 4e-14
 Identities = 31/37 (83%), Positives = 32/37 (85%)

Query: 17  FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
           F Y  LEWDFRLPLVKSINVSGHKYGL Y GIGWV+W
Sbjct: 254 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVW 290


>At1g65960 unknown protein
          Length = 494

 Score = 72.4 bits (176), Expect = 4e-14
 Identities = 31/37 (83%), Positives = 32/37 (85%)

Query: 17  FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
           F Y  LEWDFRLPLVKSINVSGHKYGL Y GIGWV+W
Sbjct: 253 FIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVW 289


>At2g02000 glutamate decarboxylase like protein
          Length = 500

 Score = 72.0 bits (175), Expect = 5e-14
 Identities = 31/37 (83%), Positives = 32/37 (85%)

Query: 17  FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
           F Y  LEWDFRLPLVKSINVSGHKYGL Y GIGWV+W
Sbjct: 254 FLYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVVW 290


>At3g17760 glutamate decarboxylase, putative
          Length = 494

 Score = 69.3 bits (168), Expect = 3e-13
 Identities = 29/37 (78%), Positives = 31/37 (83%)

Query: 17  FPYKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
           F Y  LEWDFRLP VKSINVSGHKYGL Y G+GWV+W
Sbjct: 253 FLYPDLEWDFRLPWVKSINVSGHKYGLVYAGVGWVVW 289


>At1g27980 unknown protein
          Length = 544

 Score = 27.3 bits (59), Expect = 1.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 19  YKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIW 53
           Y++  +DF +  V SI+V  HKYGL   G   V++
Sbjct: 328 YQIPPFDFSVQGVTSISVDVHKYGLAPKGTSTVLY 362


>At3g26730 RING zinc finger like protein
          Length = 772

 Score = 24.6 bits (52), Expect = 9.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 11  HAPTSSFPYKMLEWD 25
           H+P S  P KML+WD
Sbjct: 216 HSPDSMDPDKMLQWD 230


>At1g47910 reverse transcriptase, putative
          Length = 1142

 Score = 24.6 bits (52), Expect = 9.6
 Identities = 11/36 (30%), Positives = 17/36 (46%), Gaps = 7/36 (19%)

Query: 19  YKMLEWDFRLPLVKSINVSGHKYGLFYIGIGWVIWC 54
           Y  +EW+F   L++       K G     I W++WC
Sbjct: 365 YDQVEWNFIEALLR-------KMGFCEKWISWIMWC 393


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.328    0.143    0.501 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,413,530
Number of Sequences: 26719
Number of extensions: 42099
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 8
length of query: 57
length of database: 11,318,596
effective HSP length: 33
effective length of query: 24
effective length of database: 10,436,869
effective search space: 250484856
effective search space used: 250484856
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)