BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146818.6 + phase: 0 /pseudo
(642 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60170 putative protein 138 1e-32
At3g61330 copia-type polyprotein 124 2e-28
At1g58140 hypothetical protein 122 6e-28
At1g48710 hypothetical protein 122 6e-28
At2g17490 putative retroelement pol polyprotein 115 8e-26
At2g15650 putative retroelement pol polyprotein 110 2e-24
At4g07810 putative polyprotein 105 8e-23
At3g25450 hypothetical protein 102 9e-22
At2g20460 putative retroelement pol polyprotein 102 9e-22
At1g47520 hypothetical protein 102 9e-22
At3g59720 copia-type reverse transcriptase-like protein 100 2e-21
At4g10990 putative retrotransposon polyprotein 99 9e-21
At1g26990 polyprotein, putative 98 1e-20
At2g16000 putative retroelement pol polyprotein 97 2e-20
At2g15870 putative retroelement pol polyprotein 97 2e-20
At1g47650 hypothetical protein 94 2e-19
At4g23160 putative protein 92 9e-19
At2g04820 putative retroelement pol polyprotein 91 3e-18
At1g70010 hypothetical protein 88 1e-17
At2g05390 putative retroelement pol polyprotein 87 2e-17
>At3g60170 putative protein
Length = 1339
Score = 138 bits (347), Expect = 1e-32
Identities = 62/156 (39%), Positives = 105/156 (66%)
Query: 299 IKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMMG 358
+K +F+R + TLF T IL+V +YVDD+IF ++ ++C EF K M EFE S +G
Sbjct: 992 LKEEFERCPSEHTLFTKTRVGNILIVSLYVDDLIFTGSDKAMCDEFKKSMMLEFEMSDLG 1051
Query: 359 ELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKVD 418
++K FLGI++ Q G+++ Q +Y +E+L +F +++ + P+ P +K++ G KVD
Sbjct: 1052 KMKHFLGIEVKQSDGGIFICQRRYAREVLARFGMDESNAVKNPIVPGTKLTKDENGEKVD 1111
Query: 419 QKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
+ ++ ++GSL+YLT +RPD+++ VCL +RF SNP+
Sbjct: 1112 ETMFKQLVGSLMYLTVTRPDLMYGVCLISRFMSNPR 1147
>At3g61330 copia-type polyprotein
Length = 1352
Score = 124 bits (310), Expect = 2e-28
Identities = 72/207 (34%), Positives = 114/207 (54%), Gaps = 7/207 (3%)
Query: 264 NKVTVNKKVLSTLKNLLQLQDWKQSGYFYPMQ*ILIKNDFKRGQVDTTLFRGTLKKYILV 323
+KV KKVL LK + + + YF + DF + + L+ K+ IL+
Sbjct: 975 DKVLRLKKVLYGLKQAPRAWNTRIDKYFK-------EKDFIKCPYEHALYIKIQKEDILI 1027
Query: 324 VQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMMGELKFFLGIQINQRKDGVYVHQTKYT 383
+YVDD+IF N S+ +EF K M EFE + +G + ++LGI++ Q +G+++ Q Y
Sbjct: 1028 ACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYA 1087
Query: 384 KELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKVDQKLYIGMIGSLLYLTASRPDILFSV 443
KE+LKKFK++D + TPM SK++ G VD + ++GSL YLT +RPDIL++V
Sbjct: 1088 KEVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAV 1147
Query: 444 CLCARFQSNPKRISFNCC*ENLHVFEG 470
+ +R+ +P F L +G
Sbjct: 1148 GVVSRYMEHPTTTHFKAAKRILRYIKG 1174
>At1g58140 hypothetical protein
Length = 1320
Score = 122 bits (306), Expect = 6e-28
Identities = 71/207 (34%), Positives = 113/207 (54%), Gaps = 7/207 (3%)
Query: 264 NKVTVNKKVLSTLKNLLQLQDWKQSGYFYPMQ*ILIKNDFKRGQVDTTLFRGTLKKYILV 323
+KV KK L LK + + + YF + DF + + L+ K+ IL+
Sbjct: 943 DKVLRLKKALYGLKQAPRAWNTRIDKYFK-------EKDFIKCPYEHALYIKIQKEDILI 995
Query: 324 VQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMMGELKFFLGIQINQRKDGVYVHQTKYT 383
+YVDD+IF N S+ +EF K M EFE + +G + ++LGI++ Q +G+++ Q Y
Sbjct: 996 ACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYA 1055
Query: 384 KELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKVDQKLYIGMIGSLLYLTASRPDILFSV 443
KE+LKKFK++D + TPM SK++ G VD + ++GSL YLT +RPDIL++V
Sbjct: 1056 KEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAV 1115
Query: 444 CLCARFQSNPKRISFNCC*ENLHVFEG 470
+ +R+ +P F L +G
Sbjct: 1116 GVVSRYMEHPTTTHFKAAKRILRYIKG 1142
>At1g48710 hypothetical protein
Length = 1352
Score = 122 bits (306), Expect = 6e-28
Identities = 71/207 (34%), Positives = 113/207 (54%), Gaps = 7/207 (3%)
Query: 264 NKVTVNKKVLSTLKNLLQLQDWKQSGYFYPMQ*ILIKNDFKRGQVDTTLFRGTLKKYILV 323
+KV KK L LK + + + YF + DF + + L+ K+ IL+
Sbjct: 975 DKVLRLKKALYGLKQAPRAWNTRIDKYFK-------EKDFIKCPYEHALYIKIQKEDILI 1027
Query: 324 VQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMMGELKFFLGIQINQRKDGVYVHQTKYT 383
+YVDD+IF N S+ +EF K M EFE + +G + ++LGI++ Q +G+++ Q Y
Sbjct: 1028 ACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYA 1087
Query: 384 KELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKVDQKLYIGMIGSLLYLTASRPDILFSV 443
KE+LKKFK++D + TPM SK++ G VD + ++GSL YLT +RPDIL++V
Sbjct: 1088 KEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAV 1147
Query: 444 CLCARFQSNPKRISFNCC*ENLHVFEG 470
+ +R+ +P F L +G
Sbjct: 1148 GVVSRYMEHPTTTHFKAAKRILRYIKG 1174
>At2g17490 putative retroelement pol polyprotein
Length = 822
Score = 115 bits (288), Expect = 8e-26
Identities = 59/155 (38%), Positives = 96/155 (61%), Gaps = 1/155 (0%)
Query: 300 KNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMMGE 359
+ +F R D L+ + +LVV IYVDD+I + + +EF M++EFE S +G
Sbjct: 630 RENFTRSDNDHALYTKEVLGKLLVVCIYVDDLIVTGDDEEMVEEFKTAMKNEFEMSDLGL 689
Query: 360 LKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKVDQ 419
L +FLG++I Q +G+++ Q Y ++LLKKF +ED K+M+TP+ P +ED + D
Sbjct: 690 LNYFLGMEIVQSLEGIFLSQECYARKLLKKFNMEDSKIMSTPLLPQRKDQEED-ESLADS 748
Query: 420 KLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
K+Y ++G LLYLT++RP+++F +R+ PK
Sbjct: 749 KVYRSLVGGLLYLTSTRPNLMFFASYLSRYLKEPK 783
>At2g15650 putative retroelement pol polyprotein
Length = 1347
Score = 110 bits (276), Expect = 2e-24
Identities = 63/186 (33%), Positives = 103/186 (54%), Gaps = 3/186 (1%)
Query: 270 KKVLSTLKNLLQLQDWKQSGYFYPMQ*ILIKNDFKRGQVDTTLFRGTLKKYILVVQIYVD 329
+KVL K L L+ ++ Y + I+N F R D L+ + +L+V +YVD
Sbjct: 974 EKVLRLYKALYGLKQAPRAWY-ERIDSYFIQNGFARSMNDAALYSKKKGEDVLIVSLYVD 1032
Query: 330 DIIFGSTNASLCKEFSK*MQDEFEKSMMGELKFFLGIQINQRKDGVYVHQTKYTKELLKK 389
D+I N L F K M+DEFE + +G L +FLG+++NQ G+++ Q KY +L+ K
Sbjct: 1033 DLIITGNNTHLINTFKKNMKDEFEMTDLGLLNYFLGMEVNQDDSGIFLSQEKYANKLIDK 1092
Query: 390 FKLEDCKVMNTPMHPTCT*SKEDIGTK--VDQKLYIGMIGSLLYLTASRPDILFSVCLCA 447
F +++ K ++TP+ P + K D Y ++G LLYL ASRPD++++ +
Sbjct: 1093 FGMKESKSVSTPLTPQGKRKGVEGDDKEFADPTKYRRIVGGLLYLCASRPDVMYASSYLS 1152
Query: 448 RFQSNP 453
R+ S+P
Sbjct: 1153 RYMSSP 1158
>At4g07810 putative polyprotein
Length = 1366
Score = 105 bits (262), Expect = 8e-23
Identities = 62/185 (33%), Positives = 101/185 (54%), Gaps = 1/185 (0%)
Query: 270 KKVLSTLKNLLQLQDWKQSGYFYPMQ*ILIKNDFKRGQVDTTLFRGTLKKYILVVQIYVD 329
+ V +K+L L+ + +F+ +LI+N F + D TLF + L + +YVD
Sbjct: 1030 RPVCRLVKSLYGLKQASRQ-WFHKFSGVLIQNGFMQSLFDPTLFVRVREDTFLALLVYVD 1088
Query: 330 DIIFGSTNASLCKEFSK*MQDEFEKSMMGELKFFLGIQINQRKDGVYVHQTKYTKELLKK 389
DI+ S S E + + EF+ +G+ ++FLG++I + K+G+ + Q KY ELL++
Sbjct: 1089 DIMLVSNKDSAVIEVKQILAKEFKLKDLGQKRYFLGLEIARSKEGISISQRKYALELLEE 1148
Query: 390 FKLEDCKVMNTPMHPTCT*SKEDIGTKVDQKLYIGMIGSLLYLTASRPDILFSVCLCARF 449
F CK + TPM S+ED +D Y +IG L+YLT +RPDI F+V ++
Sbjct: 1149 FGFLGCKPVPTPMELNLKLSQEDGALLLDASHYRKLIGRLVYLTVTRPDICFAVNKLNQY 1208
Query: 450 QSNPK 454
S P+
Sbjct: 1209 MSAPR 1213
>At3g25450 hypothetical protein
Length = 1343
Score = 102 bits (253), Expect = 9e-22
Identities = 53/158 (33%), Positives = 93/158 (58%)
Query: 297 ILIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSM 356
IL + F++ + +L+R + ILVV +YVDD++ +N + F K M +FE S
Sbjct: 983 ILKELKFEKCHKEPSLYRKQEGENILVVAVYVDDLLVTGSNLDIILNFKKGMVGKFEMSD 1042
Query: 357 MGELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTK 416
+G+L ++LGI++ Q KDG+ + Q +Y K++L++ + C +NTPM + SK +
Sbjct: 1043 LGKLTYYLGIEVLQSKDGITLKQERYAKKILEEAGMSKCNTVNTPMIASLELSKAQDEKR 1102
Query: 417 VDQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
+D+ Y IG L YL +RPD+ ++V + +R+ P+
Sbjct: 1103 IDETDYRRNIGCLRYLLHTRPDLSYNVGILSRYLQEPR 1140
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 102 bits (253), Expect = 9e-22
Identities = 53/157 (33%), Positives = 88/157 (55%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
L+ F++ D TLF + +V+ +YVDDI+ ST + ++ ++ F+ +
Sbjct: 1115 LLALGFEKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLREL 1174
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
G LK+FLG+++ + +G+ + Q KY ELL + DCK + PM P SK D
Sbjct: 1175 GPLKYFLGLEVARTSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLE 1234
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
D+++Y ++G L+YLT +RPDI F+V +F S P+
Sbjct: 1235 DKEMYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPR 1271
>At1g47520 hypothetical protein
Length = 634
Score = 102 bits (253), Expect = 9e-22
Identities = 53/165 (32%), Positives = 90/165 (54%)
Query: 290 YFYPMQ*ILIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQ 349
+F ++ L++ F +G D TLF + +YVDDI+ ST + + + ++
Sbjct: 427 WFKKLRNALVQLGFVKGHGDHTLFLRCFGTEFIAALVYVDDIVIASTTETAATQLTNALK 486
Query: 350 DEFEKSMMGELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*S 409
+ F +G LK+FLG+++ + +G+ + Q KY ELL + DC+ +TPM P S
Sbjct: 487 ESFRLRELGPLKYFLGLEVARTSEGISLCQRKYALELLTSTGMLDCQHSSTPMIPNLHLS 546
Query: 410 KEDIGTKVDQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
K D D++ Y ++G L+YLT +RPDI F+V ++ S P+
Sbjct: 547 KSDGELLEDKEYYRRLVGRLMYLTITRPDITFAVNKLCQYSSTPR 591
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 100 bits (250), Expect = 2e-21
Identities = 64/207 (30%), Positives = 102/207 (48%), Gaps = 33/207 (15%)
Query: 264 NKVTVNKKVLSTLKNLLQLQDWKQSGYFYPMQ*ILIKNDFKRGQVDTTLFRGTLKKYILV 323
+KV KKVL LK + + + YF + DF + + L+ K+ IL+
Sbjct: 975 DKVLRLKKVLYGLKQAPRAWNTRIDKYFK-------EKDFIKCPYEHALYIKIQKEDILI 1027
Query: 324 VQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMMGELKFFLGIQINQRKDGVYVHQTKYT 383
+YVDD+IF N S+ +EF K M EFE + +G + ++LGI++ Q +G+++ Q Y
Sbjct: 1028 ACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYA 1087
Query: 384 KELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKVDQKLYIGMIGSLLYLTASRPDILFSV 443
KE+LKKFK++D ++GSL YLT +RPDIL++V
Sbjct: 1088 KEVLKKFKMDDSNP--------------------------SLVGSLRYLTCTRPDILYAV 1121
Query: 444 CLCARFQSNPKRISFNCC*ENLHVFEG 470
+ +R+ +P F L +G
Sbjct: 1122 GVVSRYMEHPTTTHFKAAKRILRYIKG 1148
>At4g10990 putative retrotransposon polyprotein
Length = 1203
Score = 98.6 bits (244), Expect = 9e-21
Identities = 64/204 (31%), Positives = 107/204 (52%), Gaps = 3/204 (1%)
Query: 269 NKKVLSTLKNLLQLQDWKQSGYFYPMQ*ILIKNDFKRGQVDTTLFRGTLKKYILVVQIYV 328
+K V LK+L L+ + Y + + + +F + D T+F I+VV +YV
Sbjct: 665 SKPVCRLLKSLYGLKQASRQWY-KRLSSVFLGANFIQSPADNTMFVKVSCTSIIVVLVYV 723
Query: 329 DDIIFGSTNASLCKEFSK*MQDEFEKSMMGELKFFLGIQINQRKDGVYVHQTKYTKELLK 388
DD++ S ++S + + ++ EF+ +G +FFLG++I + +G+ V Q KY + LL+
Sbjct: 724 DDLMIASNDSSAVENLKELLRSEFKIKDLGPARFFLGLEIARSSEGISVCQRKYAQNLLE 783
Query: 389 KFKLEDCKVMNTPMHPTCT*SKEDIGTKV-DQKLYIGMIGSLLYLTASRPDILFSVCLCA 447
L CK + PM P +KE +GT + + Y ++G LLYL +RPDI F+V +
Sbjct: 784 DVGLSGCKPSSIPMDPNLHLTKE-MGTLLPNATSYRELVGRLLYLCITRPDITFAVHTLS 842
Query: 448 RFQSNPKRISFNCC*ENLHVFEGN 471
+F S P I + L +GN
Sbjct: 843 QFLSAPTDIHMQAAHKVLRYLKGN 866
>At1g26990 polyprotein, putative
Length = 1436
Score = 98.2 bits (243), Expect = 1e-20
Identities = 62/163 (38%), Positives = 85/163 (52%), Gaps = 2/163 (1%)
Query: 309 DTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMMGELKFFLGIQI 368
D TLF + LVV +YVDDI+ ST + E + + F+ +GE KFFLGI+I
Sbjct: 1100 DHTLFVKAQDGFFLVVLVYVDDILIASTTEAASAELTSQLSSFFQLRDLGEPKFFLGIEI 1159
Query: 369 NQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV-DQKLYIGMIG 427
+ DG+ + Q KY +LL DCK + PM P SK D GT + D K Y ++G
Sbjct: 1160 ARNADGISLCQRKYVLDLLASSDFSDCKPSSIPMEPNQKLSK-DTGTLLEDGKQYRRILG 1218
Query: 428 SLLYLTASRPDILFSVCLCARFQSNPKRISFNCC*ENLHVFEG 470
L YL +RPDI F+V A++ S P I + L +G
Sbjct: 1219 KLQYLCLTRPDINFAVSKLAQYSSAPTDIHLQALHKILRYLKG 1261
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 97.4 bits (241), Expect = 2e-20
Identities = 52/157 (33%), Positives = 87/157 (55%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
L+ FK+ D TLF ++V +YVDDI+ ST+ + + ++ + F+ +
Sbjct: 1108 LLSLGFKKTHGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDL 1167
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
G+LK+FLG+++ + G+ + Q KY ELL+ + CK ++ PM P K+D
Sbjct: 1168 GDLKYFLGLEVARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIE 1227
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
D + Y ++G L+YLT +RPDI F+V +F S P+
Sbjct: 1228 DIEQYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPR 1264
>At2g15870 putative retroelement pol polyprotein
Length = 1264
Score = 97.4 bits (241), Expect = 2e-20
Identities = 55/156 (35%), Positives = 89/156 (56%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
L+ F + D TLF +VV +YVDDI+ STN + + S+ +Q+ F+ +
Sbjct: 918 LLSLRFFKTHGDHTLFLKDCGGEYVVVLVYVDDIVIASTNEAAAVQLSQDLQNLFKLRDL 977
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
G+LK+FLG++I + + G+ + Q KY ELL + +CK+++ PM P K D
Sbjct: 978 GDLKYFLGLEITRTEAGISLCQRKYALELLASTGMINCKLVSVPMVPNLKLMKVDGELLE 1037
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNP 453
D++ Y ++G+L+YLT +RPDI F+V +F P
Sbjct: 1038 DREQYRRIVGTLMYLTITRPDITFAVNKLCQFSYAP 1073
>At1g47650 hypothetical protein
Length = 1409
Score = 94.4 bits (233), Expect = 2e-19
Identities = 53/157 (33%), Positives = 86/157 (54%)
Query: 298 LIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMM 357
L+ FK+ D TLF ++V +YVDDI ST+ + ++ +Q F+ +
Sbjct: 899 LLDLGFKKTHGDHTLFIKEYDGEFVIVLVYVDDIAIASTSEGAAIQLTQDLQQRFKLRDL 958
Query: 358 GELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKV 417
G+LK+FLG++I + + G+ + Q KY ELL + +CK ++ PM P K D
Sbjct: 959 GDLKYFLGLEIARTEAGISICQRKYALELLASTGMVNCKPVSVPMIPNVKMMKTDGDLLD 1018
Query: 418 DQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPK 454
D++ Y ++G L+YLT +R DI F+V +F S P+
Sbjct: 1019 DREQYRRIVGKLMYLTITRLDITFAVNKLCQFSSAPR 1055
>At4g23160 putative protein
Length = 1240
Score = 92.0 bits (227), Expect = 9e-19
Identities = 60/181 (33%), Positives = 87/181 (47%)
Query: 290 YFYPMQ*ILIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQ 349
+F LI F + D T F L V +YVDDII S N + E ++
Sbjct: 246 WFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLK 305
Query: 350 DEFEKSMMGELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*S 409
F+ +G LK+FLG++I + G+ + Q KY +LL + L CK + PM P+ T S
Sbjct: 306 SCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFS 365
Query: 410 KEDIGTKVDQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPKRISFNCC*ENLHVFE 469
G VD K Y +IG L+YL +R DI F+V ++F P+ + LH +
Sbjct: 366 AHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIK 425
Query: 470 G 470
G
Sbjct: 426 G 426
>At2g04820 putative retroelement pol polyprotein
Length = 387
Score = 90.5 bits (223), Expect = 3e-18
Identities = 59/164 (35%), Positives = 86/164 (51%), Gaps = 1/164 (0%)
Query: 290 YFYPMQ*ILIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQ 349
++ ++ L+ F DT+LF L V +YVDDII + +ASL K F+ +
Sbjct: 35 WYQELRNYLLAAGFTNSLADTSLFIYKRANSYLYVLVYVDDIII-TGDASLVKNFNVSLA 93
Query: 350 DEFEKSMMGELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*S 409
D F +G L +FLGI+ + K G+++ Q KY +LL K + D K ++TPM T S
Sbjct: 94 DRFSLKDLGALSYFLGIEATRTKKGLHLMQRKYITDLLAKTHMLDAKPISTPMATTPKLS 153
Query: 410 KEDIGTKVDQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNP 453
D K Y +IGSL YL+ +RPDI F V ++F P
Sbjct: 154 LHSGTILDDAKEYRMIIGSLQYLSFTRPDIAFVVNRLSQFMHKP 197
>At1g70010 hypothetical protein
Length = 1315
Score = 88.2 bits (217), Expect = 1e-17
Identities = 53/168 (31%), Positives = 83/168 (48%)
Query: 303 FKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSMMGELKF 362
F + D T F L V +Y+DDII S N + M+ F+ +GELK+
Sbjct: 974 FIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRDLGELKY 1033
Query: 363 FLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTKVDQKLY 422
FLG++I + G+++ Q KY +LL + CK + PM P+ + + G V+ Y
Sbjct: 1034 FLGLEIVRSDKGIHISQRKYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPY 1093
Query: 423 IGMIGSLLYLTASRPDILFSVCLCARFQSNPKRISFNCC*ENLHVFEG 470
+IG L+YL +RPDI F+V A+F P++ + L +G
Sbjct: 1094 RRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKAHLQAVYKILQYIKG 1141
>At2g05390 putative retroelement pol polyprotein
Length = 1307
Score = 87.4 bits (215), Expect = 2e-17
Identities = 48/174 (27%), Positives = 94/174 (53%)
Query: 297 ILIKNDFKRGQVDTTLFRGTLKKYILVVQIYVDDIIFGSTNASLCKEFSK*MQDEFEKSM 356
IL + +F + + +++R +K +L+V IYVDD++ ++ L F K M +FE S
Sbjct: 944 ILQELNFVKCSKEPSVYRRQEEKKLLIVAIYVDDLLVTGSSLDLILCFKKDMAGKFEMSD 1003
Query: 357 MGELKFFLGIQINQRKDGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCT*SKEDIGTK 416
+G+L ++LGI++ RK+G+ + Q +Y +++++ + +C + PM K
Sbjct: 1004 LGQLTYYLGIEVLHRKNGIILRQERYAMKIIEEAGMSNCNPVLIPMAAGLELCKAQEEKC 1063
Query: 417 VDQKLYIGMIGSLLYLTASRPDILFSVCLCARFQSNPKRISFNCC*ENLHVFEG 470
+ ++ Y MIG L Y+ +RPD+ + V + +R+ P+ N + L +G
Sbjct: 1064 ITERDYRRMIGCLRYIVHTRPDLSYCVGVLSRYLQQPRESHGNALKQVLRYLKG 1117
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.352 0.155 0.517
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,104,816
Number of Sequences: 26719
Number of extensions: 454615
Number of successful extensions: 1588
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1438
Number of HSP's gapped (non-prelim): 98
length of query: 642
length of database: 11,318,596
effective HSP length: 106
effective length of query: 536
effective length of database: 8,486,382
effective search space: 4548700752
effective search space used: 4548700752
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 63 (28.9 bits)
Medicago: description of AC146818.6