BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146807.7 - phase: 0 /pseudo
         (97 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g62040 Fdr1 Cen - like protein                                     122  2e-29
At5g03840 Terminal flower1 (TFL1)                                     119  3e-28
At1g65480 flowering time locus T (FT)                                 112  2e-26
At2g27550 Arabidopsis thaliana centroradialis (ATC)                   111  7e-26
At4g20370 TWIN SISTER OF FT (TSF)                                     101  6e-23
At1g18100 terminal Flower 1 (TFL1), putative                           94  2e-20
At5g08700 putative protein                                             29  0.46
At1g20510 4-coumarate:CoA ligase like protein                          26  3.0
At3g50100 hypothetical protein                                         25  5.0
At1g57830 hypothetical protein                                         25  8.6

>At5g62040 Fdr1 Cen - like protein
          Length = 177

 Score =  122 bits (307), Expect = 2e-29
 Identities = 56/87 (64%), Positives = 77/87 (88%), Gaps = 1/87 (1%)

Query: 1  MSRPLEPLSVGRVIGEVVDIFNPSVRMNVTYSTKQ-VANGHELMPSIVMNKPRVDIGGED 59
          MSR +EPL VGRVIG+V+++FNPSV M VT+++   V+NGHEL PS++++KPRV+IGG+D
Sbjct: 1  MSREIEPLIVGRVIGDVLEMFNPSVTMRVTFNSNTIVSNGHELAPSLLLSKPRVEIGGQD 60

Query: 60 MRSAYTLIMTDPDAPSPSDPHLREHLH 86
          +RS +TLIM DPDAPSPS+P++RE+LH
Sbjct: 61 LRSFFTLIMMDPDAPSPSNPYMREYLH 87


>At5g03840 Terminal flower1 (TFL1)
          Length = 177

 Score =  119 bits (297), Expect = 3e-28
 Identities = 52/85 (61%), Positives = 69/85 (81%)

Query: 2  SRPLEPLSVGRVIGEVVDIFNPSVRMNVTYSTKQVANGHELMPSIVMNKPRVDIGGEDMR 61
          +R +EPL +GRV+G+V+D F P+ +MNV+Y+ KQV+NGHEL PS V +KPRV+I G D+R
Sbjct: 6  TRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLR 65

Query: 62 SAYTLIMTDPDAPSPSDPHLREHLH 86
          S +TL+M DPD P PSDP L+EHLH
Sbjct: 66 SFFTLVMIDPDVPGPSDPFLKEHLH 90


>At1g65480 flowering time locus T (FT)
          Length = 175

 Score =  112 bits (281), Expect = 2e-26
 Identities = 50/81 (61%), Positives = 65/81 (79%)

Query: 6  EPLSVGRVIGEVVDIFNPSVRMNVTYSTKQVANGHELMPSIVMNKPRVDIGGEDMRSAYT 65
          +PL V RV+G+V+D FN S+ + VTY  ++V NG +L PS V NKPRV+IGGED+R+ YT
Sbjct: 7  DPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLDLRPSQVQNKPRVEIGGEDLRNFYT 66

Query: 66 LIMTDPDAPSPSDPHLREHLH 86
          L+M DPD PSPS+PHLRE+LH
Sbjct: 67 LVMVDPDVPSPSNPHLREYLH 87


>At2g27550 Arabidopsis thaliana centroradialis (ATC)
          Length = 175

 Score =  111 bits (277), Expect = 7e-26
 Identities = 54/82 (65%), Positives = 65/82 (78%), Gaps = 1/82 (1%)

Query: 6  EPLSVGRVIGEVVDIFNPSVRMNVTY-STKQVANGHELMPSIVMNKPRVDIGGEDMRSAY 64
          +PL VGRVIG+VVD    +V+M VTY S KQV NGHEL PS+V  KP+V++ G DMRS +
Sbjct: 7  DPLMVGRVIGDVVDNCLQAVKMTVTYNSDKQVYNGHELFPSVVTYKPKVEVHGGDMRSFF 66

Query: 65 TLIMTDPDAPSPSDPHLREHLH 86
          TL+MTDPD P PSDP+LREHLH
Sbjct: 67 TLVMTDPDVPGPSDPYLREHLH 88


>At4g20370 TWIN SISTER OF FT (TSF)
          Length = 175

 Score =  101 bits (252), Expect = 6e-23
 Identities = 46/81 (56%), Positives = 61/81 (74%)

Query: 6  EPLSVGRVIGEVVDIFNPSVRMNVTYSTKQVANGHELMPSIVMNKPRVDIGGEDMRSAYT 65
          +PL VG V+G+V+D F   V + VTY  ++V NG +L PS V+NKP V+IGG+D R+ YT
Sbjct: 7  DPLVVGSVVGDVLDPFTRLVSLKVTYGHREVTNGLDLRPSQVLNKPIVEIGGDDFRNFYT 66

Query: 66 LIMTDPDAPSPSDPHLREHLH 86
          L+M DPD PSPS+PH RE+LH
Sbjct: 67 LVMVDPDVPSPSNPHQREYLH 87


>At1g18100 terminal Flower 1 (TFL1), putative
          Length = 173

 Score = 93.6 bits (231), Expect = 2e-20
 Identities = 43/86 (50%), Positives = 62/86 (72%), Gaps = 1/86 (1%)

Query: 1  MSRPLEPLSVGRVIGEVVDIFNPSVRMNVTYSTKQVANGHELMPSIVMNKPRVDIGGEDM 60
          M+  ++PL VGRVIG+V+D+F P+  M+V +  K + NG E+ PS  +N P+V+I G   
Sbjct: 1  MAASVDPLVVGRVIGDVLDMFIPTANMSVYFGPKHITNGCEIKPSTAVNPPKVNISGHS- 59

Query: 61 RSAYTLIMTDPDAPSPSDPHLREHLH 86
             YTL+MTDPDAPSPS+P++RE +H
Sbjct: 60 DELYTLVMTDPDAPSPSEPNMREWVH 85


>At5g08700 putative protein
          Length = 768

 Score = 28.9 bits (63), Expect = 0.46
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 29  VTYSTKQVANGHELMPSIVMNKPRVDIGGEDMRSAYTLIMTDPDAPSPSDPHLREHLH*Y 88
           +TY  K   + H++   +    PR   G  D  +     +   D     DP L+E LH  
Sbjct: 89  ITYFNKNFKHSHQISVLVADPPPRRTQGKVDAYAKGDKQIQKKDPEVDHDPQLQEFLH-- 146

Query: 89  SRYHRCLFW 97
            + H+  FW
Sbjct: 147 -QEHKLKFW 154


>At1g20510 4-coumarate:CoA ligase like protein
          Length = 546

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 14/65 (21%), Positives = 32/65 (48%), Gaps = 1/65 (1%)

Query: 7   PLSVGRVIGEVVDIFNPSVRMNVTYSTKQVANGHELMPSIVMNKPRVDIGGEDMRSAYTL 66
           PL+    I + +   NP +    +    +++   + +P ++M++ RVD  G D+R    +
Sbjct: 114 PLNTSNEIAKQIKDSNPVLAFTTSQLLPKISAAAKKLPIVLMDEERVDSVG-DVRRLVEM 172

Query: 67  IMTDP 71
           +  +P
Sbjct: 173 MKKEP 177


>At3g50100 hypothetical protein
          Length = 406

 Score = 25.4 bits (54), Expect = 5.0
 Identities = 13/31 (41%), Positives = 17/31 (53%)

Query: 54 DIGGEDMRSAYTLIMTDPDAPSPSDPHLREH 84
          D+ GE+      L + D +A SPSDP  R H
Sbjct: 24 DLRGENGNWKEFLHVYDKNADSPSDPSRRSH 54


>At1g57830 hypothetical protein
          Length = 164

 Score = 24.6 bits (52), Expect = 8.6
 Identities = 13/31 (41%), Positives = 19/31 (60%), Gaps = 2/31 (6%)

Query: 36 VANGHELMPSIVMNKPRVDIG--GEDMRSAY 64
          VA  H + PS++  +PRV I   GED+R  +
Sbjct: 2  VAISHIIQPSLMQLQPRVFINFRGEDIRYGF 32


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.326    0.141    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,296,086
Number of Sequences: 26719
Number of extensions: 86088
Number of successful extensions: 208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 10
length of query: 97
length of database: 11,318,596
effective HSP length: 73
effective length of query: 24
effective length of database: 9,368,109
effective search space: 224834616
effective search space used: 224834616
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)