BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146807.4 + phase: 0 
         (919 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g20390 hypothetical protein                                        576  e-164
At3g31530 hypothetical protein                                        433  e-121
At2g15410 putative retroelement pol polyprotein                       318  1e-86
At2g15100 putative retroelement pol polyprotein                       302  7e-82
At2g13330 F14O4.9                                                     283  2e-76
At2g14400 putative retroelement pol polyprotein                       216  5e-56
At2g06320 putative retroelement pol polyprotein                       199  8e-51
At1g37060 Athila retroelment ORF 1, putative                          194  2e-49
At2g13230 pseudogene                                                  189  6e-48
At2g10690 putative retroelement pol polyprotein                       186  7e-47
At2g13060 pseudogene                                                  185  9e-47
At4g03650 putative reverse transcriptase                              181  1e-45
At2g14650 putative retroelement pol polyprotein                       177  3e-44
At4g10580 putative reverse-transcriptase -like protein                175  9e-44
At2g04670 putative retroelement pol polyprotein                       173  3e-43
At2g12040 T10J7.2                                                     173  5e-43
At2g10780 pseudogene                                                  171  1e-42
At1g36830 hypothetical protein                                        168  1e-41
At3g11970 hypothetical protein                                        162  1e-39
At1g36590 hypothetical protein                                        162  1e-39

>At1g20390 hypothetical protein
          Length = 1791

 Score =  576 bits (1484), Expect = e-164
 Identities = 341/929 (36%), Positives = 508/929 (53%), Gaps = 49/929 (5%)

Query: 1    MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
            M FGL NAGATYQR +  +  D I + VEVY+DDM+VKS   E HVE+L+K F+ L  Y 
Sbjct: 900  MSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYG 959

Query: 61   LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
            ++LNP KCTFGV SG+ LG++V+++GIE +P ++RAI E+P+P+  ++V+   GR+  ++
Sbjct: 960  MKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALN 1019

Query: 121  RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFA 180
            RFIS  T  C P + LL++     W+ + +EAF+ +K+YL  PPILV P  G  L +Y A
Sbjct: 1020 RFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIA 1079

Query: 181  VFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVN 240
            V D ++  VL ++D    ++  I+Y SK   + ETRY ++EK   A+  +A++LR Y  +
Sbjct: 1080 VSDHAVSSVLVREDR--GEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQS 1137

Query: 241  HTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLD 300
            HT  +++   P++      + +G++ +W + LSEYDI F+ + A+K  +LAD L   PL 
Sbjct: 1138 HTIAVLTD-QPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLADFLIELPL- 1195

Query: 301  DYQPIEFDFPDEEIMYVKSKDCEEPLIGEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQ 360
                               +  E  + G   +   +W L  DG+ +A G GIG  +VSP 
Sbjct: 1196 -------------------QSAERAVSG---NRGEEWSLYVDGSSSARGSGIGIRLVSPT 1233

Query: 361  GHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHH 420
               +  + R+ F  TNN+AEYE  I G+  A  M+I  +  + DS L+  Q+ GE+E  +
Sbjct: 1234 AEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQLSGEYEAKN 1293

Query: 421  AKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDV-PIIKVQRL 479
             K+  Y    + +   F   +L  IPR +N  ADALA L+    +   +D+  II V+ +
Sbjct: 1294 EKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPADALAALA----LTSDSDLRRIIPVESI 1349

Query: 480  ERPS-----HVFAIGDVIDQAGENVVDNKPWYHDIKQFLLSREYPPGASNKDKKTLRRL- 533
            ++PS      V  +  +      +  D   W  +I+ +L     P      DK T RRL 
Sbjct: 1350 DKPSIDSTDAVEIVNTIRSSNAPDPADPTDWRVEIRDYLSDGTLP-----SDKWTARRLR 1404

Query: 534  --ASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHEGTFGTHATGHTMSRKLLRAG 591
              A+++ L  + L K +    +L C+   E  ++M + HEG  G H+ G  ++ KL + G
Sbjct: 1405 IKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRALALKLKKLG 1464

Query: 592  YYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASN 651
            +YW TM  DC     KC +CQ +A  IH P   L    +P+PF  W +D++G +   AS 
Sbjct: 1465 FYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMRWAMDIVGPM--PASR 1522

Query: 652  GHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVV 711
              RFILV  DYFTKWVEA SY  +    V  F+   IICR+G+P +IITDNG+   +   
Sbjct: 1523 QKRFILVMTDYFTKWVEAESYATIRANDVQNFVWKFIICRHGLPYEIITDNGSQFISLSF 1582

Query: 712  QALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQKMVTTYRD-WHEMLPYALHGYRT 770
            +  C  +KI  + S+P  PQ NG  EA NK I   ++K +   +  W + L   L  YRT
Sbjct: 1583 ENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDEKKGAWADELDGVLWSYRT 1642

Query: 771  TVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMD 830
            T RS+T  TPF+H YGMEA+ P EV   SLR  M  K  E    +   D+L+ +EE R  
Sbjct: 1643 TPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELN-DRMMLDRLDDLEEIRNA 1701

Query: 831  AMARGQSYQARMKTAFDKKVHPREFKTGELVLKRRISQQPD-PRGKWTPNYEGPYVVKKA 889
            A+ R Q+YQ      +++KVH R F  G+LVL++      +   GK   N+EG Y V K 
Sbjct: 1702 ALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENTAEINAGKLGANWEGSYQVSKI 1761

Query: 890  FSGGALILTHMDGVELPNPVNADIVKKYF 918
               G   L  M G  +P   N+  +K+Y+
Sbjct: 1762 VRPGDYELLTMSGTAVPRTWNSMHLKRYY 1790


>At3g31530 hypothetical protein
          Length = 831

 Score =  433 bits (1113), Expect = e-121
 Identities = 273/831 (32%), Positives = 424/831 (50%), Gaps = 122/831 (14%)

Query: 1   MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
           MPFGL NAGATY+R +  +F   I K +EVY+DDM+VKS  E+ H+ +L + F++L  Y 
Sbjct: 118 MPFGLKNAGATYERFVNKIFALQIGKTMEVYIDDMLVKSMTEKDHISHLRECFKQLNLYN 177

Query: 61  LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
           ++LNP KC FGVRSG           IE +P ++ A+  M +PQ +++V+   GR+  ++
Sbjct: 178 VKLNPAKCRFGVRSG-----------IEANPKQIEALLGMASPQNKREVQCLTGRVAALN 226

Query: 121 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFA 180
           RFIS  T  C   + +LR+N+   W   C+EAF  +K YL  PPIL  PV G P  +Y A
Sbjct: 227 RFISRSTEKCLAFYDVLRRNKKFEWTTRCEEAFQELKKYLATPPILAKPVIGEPQYLYVA 286

Query: 181 VFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVN 240
           V D ++   L ++D   +K   I+Y+S+ FT  E+RY  +EK   A+  +A++LR Y  +
Sbjct: 287 VSDTAVSGELVREDRGEQK--LIFYVSQTFTSAESRYPQMEKLALAVVMSAQKLRPYFQS 344

Query: 241 HTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLD 300
           H+  ++  M P++ I    + +G++A+W + LSEYDI ++ +   K  +LAD +   P  
Sbjct: 345 HSIIVMGSM-PLRVILHSPSQSGRLAKWTIELSEYDIEYQNKTCAKSQVLADFIVELPTK 403

Query: 301 DYQPIEFDFPDEEIMYVKSKDCEEPLIGEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQ 360
           + +                   E PL       ++ W L  DG+ +  G G+G  + SP 
Sbjct: 404 EAR-------------------ENPL-------DTTWLLHVDGSSSKQGSGVGIRLTSPT 437

Query: 361 GHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHH 420
           G           E TNN+AEYEA + G+  A  ++I     + DS L+ NQ  GE+ T  
Sbjct: 438 G-----------EATNNVAEYEALVAGLNLAWGLKIGKTRAFCDSQLIANQFNGEYTTQD 486

Query: 421 AKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQR-- 478
            K+  Y  + + L   F + EL  IPR EN  ADALA L+S    +    +P+  +++  
Sbjct: 487 KKMEAYLIHVQNLAKNFDEFELTRIPRGENTSADALAALASTSDTSLKRVIPVEFIEKPS 546

Query: 479 --LERPSHVFAIGDVIDQAGENVVDNKPWYHDIKQFLLSREYPPGASNKDK-KTLRRLAS 535
             L +  HV  I    DQ   +   N  W   I  ++   + P   S+K K + L+  A+
Sbjct: 547 IELGKEEHVLPIQISADQDDPDDC-NSEWMEPIISYISEGKLP---SDKWKARKLKAQAA 602

Query: 536 RFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHEGTFGTHATGHTMSRKLLRAGYYWM 595
           RF+L    LYK      L+ CV+     ++M ++H G+                      
Sbjct: 603 RFVLVDTKLYKWRLSGPLMTCVEAEAICKIMKEIHSGS---------------------- 640

Query: 596 TMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRF 655
                             +A  IH P   L+ I+SP+PF  W +D+IG + P  S   + 
Sbjct: 641 ------------------HAPTIHQPAELLSSIASPYPFMRWSMDIIGPMHP--SKQKKL 680

Query: 656 ILVAIDYFTKWVEAASYTNVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALC 715
           +LV  DYF+KW+EA SY ++    V  F+  +I+CR+G+P +I+TDNG+   +   Q  C
Sbjct: 681 VLVLTDYFSKWIEAESYASIKDAQVENFVLKHILCRHGIPYEIVTDNGSQFISTRFQGFC 740

Query: 716 EEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQKMVTTYRDWHEMLPYALHGYRTTVRSS 775
           +++ I    S+P  PQ NG  EAAN+                   L   L  +RTT R +
Sbjct: 741 DKWGIRLSKSTPRYPQGNGQAEAANE-------------------LEGVLWLHRTTPRRA 781

Query: 776 TGATPFSHVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEE 826
           T  TPF+ +YG E V+P E+ +PSLR  +  + ++ +  Q+  D+L+LI+E
Sbjct: 782 TRETPFASIYGTECVIPAEMIVPSLRRSLSPE-NDPDNTQTPLDELDLIDE 831


>At2g15410 putative retroelement pol polyprotein
          Length = 1787

 Score =  318 bits (814), Expect = 1e-86
 Identities = 206/608 (33%), Positives = 299/608 (48%), Gaps = 72/608 (11%)

Query: 372  FECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYAR 431
            F  +NN AEYEA I G+  A  + +K +  Y DS LV +Q  G +E  + ++  Y    R
Sbjct: 1190 FPASNNEAEYEALIAGLRLAHGIEVKKIQAYCDSQLVASQFSGNYEAKNERMDAYLKVVR 1249

Query: 432  RLLTYFTKVELHHIPRDENQMADALATLSSMFRVN-------HWNDVPIIKVQ-RLERPS 483
             L   F   EL  IPR +N  ADALA L+S    +          DVP IK+Q  + +PS
Sbjct: 1250 ELSYNFEVFELTKIPRSDNAPADALAVLASTSDPDLRRVIPVECIDVPSIKIQGTITKPS 1309

Query: 484  HVFAIGDVIDQ--------------------AGENVVDNKP------------------- 504
                I    +Q                    +G  V  + P                   
Sbjct: 1310 EYTVIDLTAEQLSIVMVILPPATDRSEDAGPSGNLVCSSDPGQSSGCDRSDDSNRSADSD 1369

Query: 505  ------WYHDIKQFLLSREYPPGASNKDKKTLRRLASR---FLLDGDILYKRNYDMVLLR 555
                  W  +I+ ++  R  P     KDK   RRL +R   + L  + L + +   VLL 
Sbjct: 1370 SPASTNWIEEIRSYIADRIVP-----KDKWAARRLRARSAQYTLPHEHLLRWSATGVLLS 1424

Query: 556  CVDEHEAEQLMHDVHEGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYA 615
            C+D+ EA+Q+M ++HEG  G H+ G  ++ K+ + G YW TM  DC +   +C KCQ +A
Sbjct: 1425 CLDDEEAQQVMREIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHA 1484

Query: 616  DKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNV 675
              IH+P   L     P+PF  W +D+I      AS   ++ILV  DYFTKW EA SY  +
Sbjct: 1485 PFIHIPSEVLQTAMPPYPFMRWAMDIIRPF--PASRQKKYILVMTDYFTKWFEAESYARI 1542

Query: 676  TKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGV 735
              + V  F+  NIIC +G+P +I+TDNGT   +   +  C ++KI    S+P  PQ NG 
Sbjct: 1543 QSKEVQNFVWKNIICHHGLPYEIVTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQ 1602

Query: 736  VEAANKNIKRIVQKMVTTYRD-WHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLE 794
             EA NK I   ++K +   +  W + L   L  YRTT R ST  TPFS  YGMEA+ P E
Sbjct: 1603 AEATNKTILDGLKKRLDEKKGAWADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCE 1662

Query: 795  VEIPSLR---VIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVH 851
              +P++R   +I +  L++    Q   D L+ +EE+R  A+ R Q+YQ      ++KKV 
Sbjct: 1663 AGLPTVRRSMLINDPTLND----QMLLDNLDTLEEQRDQALLRIQNYQQAAAKFYNKKVK 1718

Query: 852  PREFKTGELVLKRRISQQPD-PRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVN 910
             R F  G+LVL++      +   GK   ++EGPY++ K    G   L  MDG  +P   N
Sbjct: 1719 NRLFAEGDLVLRKVFENTVEQDAGKLGAHWEGPYLISKVVKPGVYELLTMDGTPIPRSWN 1778

Query: 911  ADIVKKYF 918
            +  +K+Y+
Sbjct: 1779 SANLKRYY 1786



 Score =  213 bits (541), Expect = 5e-55
 Identities = 106/286 (37%), Positives = 175/286 (61%), Gaps = 23/286 (8%)

Query: 1    MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
            MPFGL NAGATY R +  +F D +   +EVY+DDM+VKS   E+H+ +L + F+ L +Y 
Sbjct: 905  MPFGLKNAGATYPRLVNQMFTDQLDHSMEVYIDDMLVKSLRAEEHITHLRQCFQVLNRYN 964

Query: 61   LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
            ++LNP KCTFGV SG+ LG++V+++GIE +P ++ AI ++P+P+  ++V+  +GR+  ++
Sbjct: 965  MKLNPSKCTFGVTSGEFLGYLVTRRGIEANPKQISAIIDLPSPRNTREVQRLIGRIAALN 1024

Query: 121  RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFA 180
            RFIS  T  C P ++LLR N+   W+++C+                    EG  L +Y A
Sbjct: 1025 RFISRSTDKCLPFYQLLRANKRFEWDEKCE--------------------EGETLYLYIA 1064

Query: 181  VFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVN 240
            V   ++  VL ++D    ++H I+Y+SK     E RY  LEK   A+  +A++LR Y  +
Sbjct: 1065 VSTSAVSGVLVREDR--GEQHPIFYVSKTLDGAELRYPTLEKLAFAVVISARKLRPYFKS 1122

Query: 241  HTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIK 286
            +T  +++   P++ I    + +G++A+W + LSEYDI +K +   K
Sbjct: 1123 YTVEVLTN-QPLRTILHSPSQSGRLAKWAVELSEYDIAYKNRTCAK 1167


>At2g15100 putative retroelement pol polyprotein
          Length = 1329

 Score =  302 bits (773), Expect = 7e-82
 Identities = 218/786 (27%), Positives = 372/786 (46%), Gaps = 98/786 (12%)

Query: 144  VWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFAVFDESMGCVLGQQDETGKKEHAI 203
            +WN+ C+EAF  +K YL EP +L     G  L +Y AV + ++  V  + + + K+   I
Sbjct: 630  IWNESCEEAFKQLKRYLSEPSVLAKREFGEQLFLYIAVSESAVTGVQVRVERSDKR--PI 687

Query: 204  YYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTG 263
            +Y+       +TRY M+EK   A+  AA++LR Y  +H   +++ + P++ I      +G
Sbjct: 688  FYV-------KTRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSL-PLRTILHSPTQSG 739

Query: 264  KIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYVKSKDCE 323
            ++ +W + LSE+D+ F+ + ++  ++                ++ F      +V+S++  
Sbjct: 740  RLGKWAIELSEFDLEFRARTSLNSTMDTSR------------QWGFIK---TWVRSRN-- 782

Query: 324  EPLIGEGPDPNSKWG--LVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEY 381
               + + P  N   G     D  + AY   +  V     G    F    +    N+ A  
Sbjct: 783  ---LSDAPTANRYSGEYEAKDACMEAYLNLVREV----SGRFEQFELTRIPRAENSAANA 835

Query: 382  EACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVE 441
             A +    E    R+  ++     ++ +++I           +  R   RRL     +  
Sbjct: 836  LAALASTFEVTLPRVIPVETISQPSIRLDEI---------SFVTTRAMRRRLDAQSAENG 886

Query: 442  LHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVD 501
            LH +  DE +++DA+                         P+ +     + D     + D
Sbjct: 887  LHQLGDDE-EISDAV------------------------HPTEIVENQSLPDNHNAPLPD 921

Query: 502  NKP------WYHDIKQFLLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYDMVLLR 555
              P      W   I+ ++L+   P  A     + L+   +RF +  DILY+R +      
Sbjct: 922  QPPHDWGADWREPIRDYILNGTLP--AEKWAARKLKATCARFCIANDILYRRIFSAPDAV 979

Query: 556  CVDEHEAEQLMHDVHEGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYA 615
            C+   +   +M +VH+GT G H  G +++ K+ + GYYW T+  DC  +ARKC +CQ +A
Sbjct: 980  CIFGEQTRTVMKEVHDGTCGNHTGGRSLAFKVRKYGYYWPTLVADCEAYARKCEQCQKHA 1039

Query: 616  DKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNV 675
              I  P   L  +S+P+PF  W +D++G +                  T+ VEAA+Y+N+
Sbjct: 1040 PLILQPAELLTTVSAPYPFMKWLMDIVGPLHVS---------------TRGVEAAAYSNI 1084

Query: 676  TKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGV 735
            T   V  FI  +IICR+G+P +I+TDNG+   +   +  CEE++I   +S+P  PQ NG 
Sbjct: 1085 THVQVWNFIWKDIICRHGLPYEIVTDNGSQFISEQFEVFCEEWQIRLSHSTPRYPQGNGQ 1144

Query: 736  VEAANKNIKRIVQKMVTTYRD-WHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLE 794
             EA NK I   ++K +  Y+  W   L   L   RTT R +T  TPFS +YGMEAV+P E
Sbjct: 1145 AEAMNKTIISNLKKKLNAYKGAWFGELQNVLWAVRTTPRRATDETPFSLIYGMEAVIPAE 1204

Query: 795  VEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPRE 854
            +++PS R I   + +E E  +   D ++ I+E+R  A+AR Q+Y       ++  V  R 
Sbjct: 1205 IKVPSARRIRNPQ-NETENNEMIIDVIDTIDERRNRALARMQNYHNAGARYYNSNVRNRS 1263

Query: 855  FKTGELVLKRRISQQPDPR--GKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNAD 912
            F+ G LVL RR+ Q    +  GK   ++EGPY +      G   L +M+G  +    N+ 
Sbjct: 1264 FEVGTLVL-RRVQQNKAEKGAGKLGISWEGPYKITHVVRNGVYRLINMEGKTVRRAWNSM 1322

Query: 913  IVKKYF 918
             +K+++
Sbjct: 1323 HLKRFY 1328


>At2g13330 F14O4.9
          Length = 889

 Score =  283 bits (725), Expect = 2e-76
 Identities = 157/461 (34%), Positives = 244/461 (52%), Gaps = 59/461 (12%)

Query: 1   MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
           MPFGL NAG TYQR +  +F D + K +EVY+DDM+VKS  E+ HV  L + F+ L K++
Sbjct: 366 MPFGLKNAGTTYQRLVNRMFVDQLGKTIEVYIDDMLVKSAHEKDHVPQLRECFKILIKFE 425

Query: 61  LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
           ++LNP+KC+F V+S + L ++V+++GIE +P ++ A  EMP+P+  ++V+   GR+  ++
Sbjct: 426 MKLNPEKCSFEVQSREFLEYLVTERGIEANPKQIAAFIEMPSPKMAREVQRLTGRIPALN 485

Query: 121 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFA 180
            FIS     C P ++ LRK +   WN +C++AF  +K YL EPPIL  P +G PL +Y  
Sbjct: 486 GFISRSANKCVPFYQPLRKGKEFDWNKDCEQAFKQLKAYLTEPPILAKPEKGEPLYLY-- 543

Query: 181 VFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVN 240
                                         T+ + R   +EK    +  + ++LR Y  +
Sbjct: 544 ------------------------------TNRDKRCPAMEKLALTVVMSVRKLRLYFQS 573

Query: 241 HTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLD 300
           H   ++    PI+ I      +G++A+W + L EYDI ++T+ ++K  +LAD +   PL 
Sbjct: 574 HPI-VVMTSQPIRTILHSLTQSGRLAKWAIELREYDIEYRTRTSLKAQVLADFVIKLPLA 632

Query: 301 DYQPIEFDFPDEEIMYVKSKDCEEPLIGEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQ 360
           D                           +G + N KW L  DG+ N  G G+G  + SP 
Sbjct: 633 DL--------------------------DGTNSNKKWLLHVDGSSNRQGSGVGIQLTSPT 666

Query: 361 GHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHH 420
           G  I  + ++ F  +NN +EYEA I GI+ A +  I+ +  Y DS LV +Q  GE+E   
Sbjct: 667 GEVIEQSLQLGFNASNNESEYEALIAGIKLAQEKGIREIHAYSDSQLVTSQFHGEYEAKD 726

Query: 421 AKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSS 461
            ++  Y +  + L   F   +L  IPR EN  AD LA L+S
Sbjct: 727 ERMEAYLELVKTLAQQFESFKLTRIPRGENTSADTLAALAS 767


>At2g14400 putative retroelement pol polyprotein
          Length = 1466

 Score =  216 bits (550), Expect = 5e-56
 Identities = 159/535 (29%), Positives = 251/535 (46%), Gaps = 74/535 (13%)

Query: 407  LVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMF--R 464
            +++NQ  G++E   +++  Y    + L   F K EL  IPR +N  ADALA L+S     
Sbjct: 790  IIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIRIPRGQNTTADALAALASTSDPE 849

Query: 465  VNHWNDVPIIKVQRLERPSHVFAIGDVIDQA---GENVVDNKPWYHDIKQFLLSREYPPG 521
            VN    V  I  + ++     F +      A   G+  V+  P     K    +   P  
Sbjct: 850  VNSIIPVECISERSIKEEKEAFVVTRSRAAARDRGDTAVELPPVKRR-KSKEATVPKPAV 908

Query: 522  ASNKDKKTLRRLASRFLLDGDI----------------------LYKRNYDMVLLRCVDE 559
              N   + +  + S   ++ +                       LY+R      L  +  
Sbjct: 909  QENIGIELIEEVISDAKIEAETEPWVDEDILAPNEHPEPEALNSLYRRGVSDPYLLSIFG 968

Query: 560  HEAEQLMHDVHEGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIH 619
               E +M +VHEG  G+H++G  M+ K+ +  YYW TM  DC ++A++C +CQ++A  IH
Sbjct: 969  PVVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDCVKYAQRCKRCQLHAPLIH 1028

Query: 620  VPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQV 679
             P    + IS+P+PF  W +D+IG +  +++ G +++LV  DYF+KW+EA +        
Sbjct: 1029 QPSELFSSISAPYPFMRWSMDIIGPLH-RSTRGVQYLLVLTDYFSKWIEAEA-------- 1079

Query: 680  VAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAA 739
                    I+  +G+                        K+ +  S+   PQ NG  EAA
Sbjct: 1080 --------ILLNWGI------------------------KVSY--STLRYPQGNGQAEAA 1105

Query: 740  NKNIKRIVQKMVTTYRD-WHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEVEIP 798
            NK I   ++K +   +  W++ L   L  YRTT R STG TPFS VYGM+AV+P E+ +P
Sbjct: 1106 NKTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTGETPFSLVYGMKAVVPAELNVP 1165

Query: 799  SLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKTG 858
             LR   EA L+E E      D L+ I E+R  A+ + Q+YQ      ++ KV  R F  G
Sbjct: 1166 GLR-RTEAPLNEKENSAMLDDSLDTINERRDQALIQIQNYQHAAARYYNSKVKSRPFFVG 1224

Query: 859  ELVLKRRI-SQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNAD 912
            + VLKR   +++ +  GK   N+EGPY+V +    G   L  ++   +  P N +
Sbjct: 1225 DYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVRNGVYRLKDLEDRPVQRPWNVN 1279



 Score =  184 bits (467), Expect = 2e-46
 Identities = 91/238 (38%), Positives = 152/238 (63%), Gaps = 2/238 (0%)

Query: 1   MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
           MPFGL NAGATY R +  +F + + K +EVY+DDM++KS  +E HV++L + F  L +Y+
Sbjct: 587 MPFGLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQ 646

Query: 61  LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
           ++LNP KCTFGV SG+ LG+IV+++GIE +P+++ A   MP+P+  K+V+   GR+  ++
Sbjct: 647 MKLNPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGRIAALN 706

Query: 121 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFA 180
           RFIS  T    P +++L+ N+  +W+++C+EAF  +K YL  PP+L  P     L +Y +
Sbjct: 707 RFISRSTDKSLPFYQILKGNKEFLWDEKCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVS 766

Query: 181 VFDESMGCVLGQQDETGKKEHAIYYLSKKFT-DCETRYTMLEKTCCALAWAAKRLRHY 237
           V + ++  VL ++D  G+++   Y +  +F  D E + + +E     +   AK  R +
Sbjct: 767 VSNHAVSGVLIREDR-GEQKPIYYIIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKF 823


>At2g06320 putative retroelement pol polyprotein
          Length = 466

 Score =  199 bits (505), Expect = 8e-51
 Identities = 141/440 (32%), Positives = 217/440 (49%), Gaps = 16/440 (3%)

Query: 485 VFAIGDVIDQAGENVVDNKPWYHDIKQFLLSREYPPGASNKDKKTLRRLASRFLLDGDIL 544
           +F+IG    Q    V    PWY D   +L     PP  ++ ++K   R    +  D   L
Sbjct: 20  LFSIGKEFHQLNA-VEGGSPWYADHVNYLACGIEPPNLTSYERKNFFRDIHHYYWDEPYL 78

Query: 545 YKRNYDMVLLRCVDEHEAEQLMHDVHEGTFGTH-ATGHTMSRKLLRAGYYWMTMEHDCYQ 603
           Y    D +    V E E E ++   H+  +G H AT  T+S K+L+AG++W TM  D  +
Sbjct: 79  YTLCKDKIYRSYVSEDEVEGILLHCHDSAYGGHFATFKTVS-KILQAGFWWPTMFKDAQE 137

Query: 604 HARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYF 663
              KC  CQ   +         N I     F +WGID +G     +S G+++ILV +DY 
Sbjct: 138 FVSKCDSCQRKGNISRRNEMPQNPILEVDIFDVWGIDFMGPFP--SSYGNKYILVVVDYV 195

Query: 664 TKWVEA-ASYTNVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEH 722
           +KWVEA AS TN  K VV K  +  I  R+GV   +I+D G +  N V + L ++  ++H
Sbjct: 196 SKWVEAIASPTNDAK-VVLKLFKTIIFPRFGVSWVVISDGGKHFINKVFENLLKKHGVKH 254

Query: 723 HNSSPYRPQMNGVVEAANKNIKRIVQKMV-TTYRDWHEMLPYALHGYRTTVRSSTGATPF 781
             ++PY PQ +G VE +N+ IK I++K V  T +DW   L  AL  Y+T  ++  G TPF
Sbjct: 255 KVATPYHPQTSGQVEISNREIKTILEKTVGITRKDWSTKLDDALWAYKTAFKTPIGTTPF 314

Query: 782 SHVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQAR 841
           + +      L +E+E  ++  +           + R  QL+ ++E R++A    + Y+ R
Sbjct: 315 NLLCVKSCHLHVELEYKAMWAVKLLNFDIKTAEEKRLIQLSELDEIRLEAYESSKIYKER 374

Query: 842 MKTAFDKKVHPREFKTGELVL--KRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTH 899
            K   DKK+  ++F+ G+ VL    R+   P   GK    + GP+ + +    GA+ L  
Sbjct: 375 TKLFHDKKIITKDFQVGDQVLLFNSRLKIFP---GKLKSRWSGPFCITEVRPYGAVTLAG 431

Query: 900 MDGVELPNPVNADIVKKYFA 919
             GV     VN   +KKY A
Sbjct: 432 KSGV---FTVNGQRLKKYLA 448


>At1g37060 Athila retroelment ORF 1, putative
          Length = 1734

 Score =  194 bits (493), Expect = 2e-49
 Identities = 139/419 (33%), Positives = 207/419 (49%), Gaps = 43/419 (10%)

Query: 504  PWYHDIKQFLLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAE 563
            PWY D   +L+S E PP  S+ +KK   +  + F  D   LY    D +   CV E E E
Sbjct: 1334 PWYADHVNYLVSGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDKIYRTCVSEDEIE 1393

Query: 564  QLMHDVHEGTFGTH-ATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPP 622
             ++   H   +G H AT  TMS K+L+AG++W +M  D  +   KC   +          
Sbjct: 1394 GILLHCHGFAYGGHFATFKTMS-KILQAGFWWPSMFKDAQEFISKCDSFE---------- 1442

Query: 623  HALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEA-ASYTNVTKQVVA 681
                       F +WGID +G     +S G+++ILVAIDY +KWVEA AS+TN   +VV 
Sbjct: 1443 ----------NFDVWGIDFMGPF--PSSYGNKYILVAIDYVSKWVEAIASHTN-DARVVL 1489

Query: 682  KFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAANK 741
            K  +  I  R+GVP  +I+D G +  N   + L ++  ++H  S        G VE +N+
Sbjct: 1490 KLFKTIIFPRFGVPRIVISDGGKHFINKGFENLLKKHGVKHKTS--------GQVEISNR 1541

Query: 742  NIKRIVQKMV-TTYRDWHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEVEIPSL 800
             IK I++K V +T +DW   L   L  YRT  ++  G TPF+ +YG    LP+E+E  ++
Sbjct: 1542 EIKAILEKTVGSTRKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVELEYKAM 1601

Query: 801  RVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKTGEL 860
              +           + R  QLN + + R++A    + Y+ R K+  DKK+  R+FK G+ 
Sbjct: 1602 WAVKLLNFDIKTAEEKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQ 1661

Query: 861  VL--KRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKY 917
            VL    R+   P   GK    + GP+ V      GA+ L   +G      VN   +KKY
Sbjct: 1662 VLLFNSRLRLFP---GKLKSRWSGPFSVTAVRPYGAITLAGKNG---DFTVNGQRLKKY 1714



 Score =  159 bits (403), Expect = 5e-39
 Identities = 97/318 (30%), Positives = 158/318 (49%), Gaps = 31/318 (9%)

Query: 1    MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
            MPFGL NA AT+QR MT++F D+I + VEV++DD  V  +     +  L ++ +R  +  
Sbjct: 1040 MPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSSFSSCLLNLCRVLKRCEETN 1099

Query: 61   LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
            L LN +KC F VR G +LG  +S++GIEVD  K+  + ++  P+T K +R FLG   +  
Sbjct: 1100 LVLNWEKCHFMVREGIVLGRKISEEGIEVDKAKIDVMMQLQPPKTVKDIRSFLGHAGFYR 1159

Query: 121  RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFA 180
             FI   +    P+ +LL K     ++DEC  AF  IK  L+  PI+  P    P  +   
Sbjct: 1160 IFIKDFSKLARPLTRLLCKETEFAFDDECLTAFKLIKEALITAPIVQAPNWDFPFEII-- 1217

Query: 181  VFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVN 240
                                           D + RY   EK   A+ +A ++ R YLV 
Sbjct: 1218 ----------------------------TMDDAQVRYATTEKELLAVVFAFEKFRSYLVG 1249

Query: 241  HTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLD 300
                + +    +++I+ K     ++ RW +LL E+D+    +K I+  + ADHL+   ++
Sbjct: 1250 SKVTIYTDHAALRHIYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGV-ADHLSRMRIE 1308

Query: 301  DYQPIEFDFPDEEIMYVK 318
            D   I+   P+E++M ++
Sbjct: 1309 DEVLIDDSMPEEQLMAIQ 1326


>At2g13230 pseudogene
          Length = 353

 Score =  189 bits (480), Expect = 6e-48
 Identities = 123/368 (33%), Positives = 195/368 (52%), Gaps = 29/368 (7%)

Query: 421 AKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQR-- 478
           A L   +D+A++    F + +L  IPR EN  ADALA L+S   +N    +P+  +++  
Sbjct: 3   AYLALVQDHAKQ----FHEFKLTRIPRGENTSADALAALASTSDLNMRRVIPVEFIEKPS 58

Query: 479 --LERPSHVFAIGDVIDQAGENVVDNKP-------WYHDIKQFLLSREYPPGASNKDKKT 529
             L++  H F I  V     E+  DN P       W   I+ F+  R+        + + 
Sbjct: 59  IELDKVEHAFPIQVVAGY--EDASDNSPSLGCDSEWIEPIRNFISKRKVR--LDKWEARK 114

Query: 530 LRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHEGTFGTHATGHTMSRKLLR 589
           L+  A+RF+L  + L+K      L+ CV++  A ++M +VH G+ G ++ G  ++ K+ R
Sbjct: 115 LKAEAARFVLVEEKLFKWRLSGPLMTCVEKEAARKVMKEVHGGSCGNNSGGRALAIKIKR 174

Query: 590 AGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKA 649
            GY+W TM  DC        KCQ  A  IH+P   L+ I+SP+P   W +D+IG +   A
Sbjct: 175 LGYFWPTMIKDC-------EKCQRNAPTIHLPAELLSSIASPYPLMRWSMDIIGPMH--A 225

Query: 650 SNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNN 709
           S   + +LV  DYF+K  EA SY ++ +  V  F+  +I+CR+GVP +I+TDNG+   + 
Sbjct: 226 SKQKKLVLVLTDYFSKLREAESYASIKEAQVESFMWKHILCRHGVPYEIVTDNGSQFIST 285

Query: 710 VVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQKMVTTYR-DWHEMLPYALHGY 768
             Q  C+++ I    S+P   Q NG  +AANK I   ++K +T  +  W + L   L  +
Sbjct: 286 RFQGFCDKWGIRLSKSTPRYLQGNGQADAANKTILDGLKKRLTAKKGSWVDELEGVLWSH 345

Query: 769 RTTVRSST 776
           RTT R +T
Sbjct: 346 RTTPRRAT 353


>At2g10690 putative retroelement pol polyprotein
          Length = 622

 Score =  186 bits (471), Expect = 7e-47
 Identities = 106/316 (33%), Positives = 173/316 (54%), Gaps = 7/316 (2%)

Query: 1   MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
           M FGL NA  T+QR MT++F D I + +EV++DD    S+     +  L ++ ER  +  
Sbjct: 180 MSFGLCNAPGTFQRSMTSIFSDFIEEIMEVFMDDFSGFSSC----LLNLCRVLERCEETN 235

Query: 61  LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
           L LN +KC F V  G +LG  +S KGIEVD  K+  + ++  P+T K +R FLG   +  
Sbjct: 236 LVLNWEKCHFMVHEGIVLGHKISGKGIEVDKAKIDVMIQLQPPKTVKDIRSFLGHAEFYR 295

Query: 121 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFA 180
           RFI   +    P+ +LL K     ++++C +AF  IK  L+  PI   P    P  +   
Sbjct: 296 RFIKDFSKIARPLTRLLCKETEFNFDEDCLKAFHLIKETLVSAPIFQAPNWDHPFEIMCD 355

Query: 181 VFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVN 240
            FD ++G VL Q+ +   K H IYY S+   + +TRY  +EK   A+ +A +++R YLV 
Sbjct: 356 AFDYAVGAVLDQKID--DKLHVIYYASRTMDEAQTRYATIEKELLAVVFAFEKIRSYLVG 413

Query: 241 HTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLD 300
               +      +++I+ K     ++ RW +LL E+D+    +K ++  + ADHL+   ++
Sbjct: 414 FKVKVYIDHAALRHIYAKKETKSRLLRWILLLQEFDMEIIDKKGVENGV-ADHLSRMRIE 472

Query: 301 DYQPIEFDFPDEEIMY 316
           D  PI+   P+E++M+
Sbjct: 473 DSVPIDDTMPEEQLMF 488



 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 733 NGVVEAANKNIKRIVQKMV-TTYRDWHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVL 791
           +G VE +N+ +K I+ K+V  + RDW   L   L  YRT  ++  G TPF  +YG    L
Sbjct: 525 SGQVEVSNRQMKDILTKVVGVSKRDWSTKLDETLWAYRTAYKTPIGRTPFQMLYGKSCHL 584

Query: 792 PLEVEIPSL 800
           P+EVE  ++
Sbjct: 585 PVEVEYKAI 593


>At2g13060 pseudogene
          Length = 930

 Score =  185 bits (470), Expect = 9e-47
 Identities = 113/365 (30%), Positives = 185/365 (49%), Gaps = 17/365 (4%)

Query: 504 PWYHDIKQFLLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAE 563
           PWY DI  +L +   P   ++ +KK   R   R+  D   LYK +YD +  RC+   E  
Sbjct: 137 PWYADIVNYLAADVEPDNFTDYNKKRFLREIRRYQWDEPYLYKHSYDGIYRRCIAATEVP 196

Query: 564 QLMHDVHEGTFGTH-ATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQI---YADKIH 619
            ++   H  ++G H AT  T+S K+L+A ++W TM  D  +   +C  CQ     + +  
Sbjct: 197 SILSHCHSSSYGGHFATFKTVS-KVLQADFWWPTMFRDTQKFISQCDPCQRRGKISKRNE 255

Query: 620 VPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQV 679
           +PP+    +     F  WGID +G   P  SN + +ILV +DY +KWVEA +       V
Sbjct: 256 MPPNFRLEVEV---FDRWGIDFMGPFPP--SNKNLYILVDVDYVSKWVEAIASLKNDSAV 310

Query: 680 VAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAA 739
           V K  ++ I  R+GVP  +I+D   +  N +++ L  ++ ++H  ++PY PQ +G VE +
Sbjct: 311 VMKLFKSIIFPRFGVPRIVISDGDKHFINKILEKLLLQYGVQHRVATPYHPQTSGQVEVS 370

Query: 740 NKNIKRIVQKMV-TTYRDWHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEVEIP 798
           N+ IK I++K V    ++W   L  AL  Y+T  ++  G TPF  +YG    LP+E+E  
Sbjct: 371 NRQIKEILEKTVGKAKKEWSYKLYDALWAYKTAFKTPLGTTPFHLLYGKACHLPVELEHK 430

Query: 799 SLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKTG 858
           +   +           +S  D++      R+ A    + Y+ R K   DKK+  R F+  
Sbjct: 431 AAWAVKMMNFDIKSAGESELDEI------RIHAYDNSKLYKERTKAYHDKKILTRTFEPN 484

Query: 859 ELVLK 863
           + +L+
Sbjct: 485 DQILR 489



 Score = 37.4 bits (85), Expect = 0.039
 Identities = 19/61 (31%), Positives = 33/61 (53%), Gaps = 1/61 (1%)

Query: 257 EKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMY 316
           +K     ++  W +LL E+DI  + +K ++  + ADHL+   +DD  PI    P+E I  
Sbjct: 2   QKKDAKPRLLIWILLLQEFDIEVRDKKGVENGV-ADHLSRIRIDDDVPINDFLPEENIYM 60

Query: 317 V 317
           +
Sbjct: 61  I 61


>At4g03650 putative reverse transcriptase
          Length = 839

 Score =  181 bits (460), Expect = 1e-45
 Identities = 101/303 (33%), Positives = 155/303 (50%), Gaps = 6/303 (1%)

Query: 1   MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
           MPFGL NA A + R M ++F + + + V +++DD++V S   E+H  +L ++ E+LR+ K
Sbjct: 538 MPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQK 597

Query: 61  LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
           L     KC+F  R    LG IVS +G+ VDP+K+ AIR+ P P    ++R FLG   Y  
Sbjct: 598 LFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGLAGYYR 657

Query: 121 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFA 180
           RFI    +   P+ KL  K+ P VW+ EC+E F S+K  L   P+L  P  G P ++Y  
Sbjct: 658 RFIKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGEPYMVYTD 717

Query: 181 VFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVN 240
                +GC L Q+ +       I Y S++    E  Y   +    A+ +A K  R YL  
Sbjct: 718 ASGVGLGCALMQRGK------VIAYASRQLRKHEGNYPTHDLEMAAVIFALKIWRSYLYG 771

Query: 241 HTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLD 300
               + +    +KYIF +  +  +  RW  L+++YD+      A  G+ +     Y P  
Sbjct: 772 GKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYHLAEMGTKVQMSTTYHPQT 831

Query: 301 DYQ 303
           D Q
Sbjct: 832 DGQ 834


>At2g14650 putative retroelement pol polyprotein
          Length = 1328

 Score =  177 bits (448), Expect = 3e-44
 Identities = 97/297 (32%), Positives = 158/297 (52%), Gaps = 7/297 (2%)

Query: 1   MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
           MPFGL NA A + R M ++F +++ + V +++DD++V S   E+H  +L ++ E+LR+ K
Sbjct: 588 MPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSLEEHEVHLRRVMEKLREQK 647

Query: 61  LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
           L     KC+F  R    LG IVS +G+ VDP+K+ AIR+   P    ++R FLG   Y  
Sbjct: 648 LFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWHTPTNATEIRSFLGLAGYYR 707

Query: 121 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFA 180
           RF+    +   P+ KL  K+ P VW+ EC+E F S+K  L   P+L  P  G P ++Y  
Sbjct: 708 RFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGEPYMVYTD 767

Query: 181 VFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVN 240
                +GCVL Q+ +       I Y S++    E  Y   +    A+ +A K  R YL  
Sbjct: 768 ASGVGLGCVLMQRGK------VIAYASRQLRKHEGNYPTHDLEMAAVIFALKIWRSYLYG 821

Query: 241 HTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQ 297
               + +    +KYIF +  +  +  +W  L+++YD+        K +++AD L+++
Sbjct: 822 GNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYDLEIAYHPG-KANVVADALSHK 877



 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 68/288 (23%), Positives = 121/288 (41%), Gaps = 27/288 (9%)

Query: 607  KCHKCQIYADKIHVPPHALNVISSP-WPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTK 665
            +C  CQ+   +  VP   L  +  P W +    ID +  +    S     I V +D  TK
Sbjct: 949  ECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFV--VGLPVSRTKDAIWVIVDRLTK 1006

Query: 666  WVEAASYTNVTKQ----VVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIE 721
               +A +  + K     V+AK   + I+  +GVP  I++D  +   +   +A   E   +
Sbjct: 1007 ---SAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTK 1063

Query: 722  HHNSSPYRPQMNGVVEAANKNIKRIVQKMVTTY-RDWHEMLPYALHGYRTTVRSSTGATP 780
               S+ Y PQ  G  E   + ++ +++  V  +   W + L      Y  +  +S G  P
Sbjct: 1064 VQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPASIGMAP 1123

Query: 781  FSHVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQA 840
            F  +Y      PL      L  + E  +  A++ Q   +++ +++    +A  R +SY  
Sbjct: 1124 FEALYERPCRTPL-----CLTQVGERSIYGADYVQETTERIRVLKLNMKEAQDRQRSYA- 1177

Query: 841  RMKTAFDKKVHPREFKTGELV-LKRRISQQPD---PRGKWTPNYEGPY 884
                  DK+    EF+ G+ V LK  + + P+      K +P Y GP+
Sbjct: 1178 ------DKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPF 1219


>At4g10580 putative reverse-transcriptase -like protein
          Length = 1240

 Score =  175 bits (444), Expect = 9e-44
 Identities = 97/295 (32%), Positives = 154/295 (51%), Gaps = 7/295 (2%)

Query: 1   MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
           MPFGL NA A + R M ++F + + + V +++DD++V S   E+   +L ++ E+LR+ K
Sbjct: 613 MPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEQEVHLRRVMEKLREQK 672

Query: 61  LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
           L     KC+F  R    LG IVS +G+ VDP+K+ AIR+ P P    ++R FLG   Y  
Sbjct: 673 LFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGWAGYYR 732

Query: 121 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFA 180
           RF+    +   P+ KL  K+ P VW+ EC+E F S+K  L   P+L  P  G+P ++Y  
Sbjct: 733 RFVKGFASMAQPMTKLTGKDVPFVWSQECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTD 792

Query: 181 VFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVN 240
                +GCVL Q  +       I Y S++    E  Y   +    A+ +A K  R YL  
Sbjct: 793 ASRVGLGCVLMQHGK------VIAYASRQLMKHEGNYPTHDLEMAAVIFALKIWRSYLYG 846

Query: 241 HTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 295
               + +    +KYIF +  +  +  RW  L+++YD+        K +++ D L+
Sbjct: 847 GKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYHPG-KANVVVDALS 900



 Score = 30.0 bits (66), Expect = 6.2
 Identities = 28/113 (24%), Positives = 49/113 (42%), Gaps = 10/113 (8%)

Query: 588  LRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSP-WPFSMWGIDMIGRIE 646
            L+  Y W+ M+ D      +C  CQ+   +  V    L  +  P W +    +D++  + 
Sbjct: 965  LKRYYQWVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITMDLV--VG 1022

Query: 647  PKASNGHRFILVAIDYFTKWVEAASYTNVTK----QVVAKFIRNNIICRYGVP 695
             + S     I V +D  TK   +A +  + K     V+AK   + I+  +GVP
Sbjct: 1023 LRVSRTKDAIWVIVDRLTK---SAHFLAIRKTDGAAVLAKKFVSEIVKLHGVP 1072


>At2g04670 putative retroelement pol polyprotein
          Length = 1411

 Score =  173 bits (439), Expect = 3e-43
 Identities = 96/295 (32%), Positives = 154/295 (51%), Gaps = 7/295 (2%)

Query: 1   MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
           MPF L NA A + R M ++F + + + V +++DD++V S   E+H  +L ++ E+LR+ K
Sbjct: 639 MPFALTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQK 698

Query: 61  LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
           L     KC+F  R    LG IVS +G+ VDP+K+ AIR+ P P    ++R FL    Y  
Sbjct: 699 LFAKLSKCSFWQREIGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLRLTGYYR 758

Query: 121 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFA 180
           RF+    +   P+ KL  K+ P VW+ EC+E F S+K  L   P+L  P  G+P ++Y  
Sbjct: 759 RFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTD 818

Query: 181 VFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVN 240
                +GCVL Q+ +       I Y S++    E  Y   +     + +A K  R YL  
Sbjct: 819 ASRVGLGCVLMQRGK------VIAYASRQLRKHEGNYPTHDLEMAVVIFALKIWRSYLYG 872

Query: 241 HTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 295
               + +    +KYIF +  +  +  RW  L+++YD+        K +++AD L+
Sbjct: 873 GKVQVFTDHKSLKYIFNQPELNLRQMRWMELVADYDLEIAYHPG-KANVVADALS 926



 Score = 73.2 bits (178), Expect = 6e-13
 Identities = 75/336 (22%), Positives = 134/336 (39%), Gaps = 57/336 (16%)

Query: 558  DEHEAEQLMHDVHEGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADK 617
            DE    +++ + H   F  H     M R L R  Y W+ M+ D      +C  CQ+   +
Sbjct: 1012 DEELRREILSEAHASMFSIHPGATKMYRDLKRY-YQWVGMKRDVANWVAECDVCQLVKAE 1070

Query: 618  IHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTK 677
              VP             ++W                    V +D  TK   +A +  + K
Sbjct: 1071 HQVPD------------AIW--------------------VIMDRLTK---SAHFLAIRK 1095

Query: 678  Q----VVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMN 733
                 V+AK   + I+  +GVP  I++D  +       +A   +   +   S+ Y PQ +
Sbjct: 1096 TDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYHPQTD 1155

Query: 734  GVVEAANKNIKRIVQKMVTTY-RDWHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLP 792
            G  E   + ++ +++  V  +   W + L      Y  + ++S G  PF  +YG     P
Sbjct: 1156 GQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRPCWTP 1215

Query: 793  LEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHP 852
            L         + E  +  A++ Q   +++ +++    +A AR +SY        DK+   
Sbjct: 1216 LR-----WTQVEERSIYGADYVQETTERIRVLKLNMKEAQARQRSYA-------DKRRRE 1263

Query: 853  REFKTGELV-LKRRISQQPDP---RGKWTPNYEGPY 884
             EF+ G+ V LK  + + P+      K +P Y GP+
Sbjct: 1264 LEFEVGDRVYLKMAMLRGPNRSILETKLSPRYMGPF 1299


>At2g12040 T10J7.2
          Length = 976

 Score =  173 bits (438), Expect = 5e-43
 Identities = 104/309 (33%), Positives = 160/309 (51%), Gaps = 3/309 (0%)

Query: 13  QRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPDKCTFGV 72
           +RGM ++F DMI   +EV++DD  V  +  E  +E L K+  R  +  L LN +KC F V
Sbjct: 79  ERGMMSIFTDMIEDIMEVFMDDFSVYGSLFEDCLENLYKVLARCEEKHLVLNWEKCHFRV 138

Query: 73  RSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGP 132
           + G +LG  +S+ GIE D  K+  +  + A    K VR FLG   +  RFI   +    P
Sbjct: 139 QDGIVLGHRISEYGIEADRAKIEVMTSLQALDNLKAVRSFLGHAGFYRRFIKDFSKIARP 198

Query: 133 IFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFAVFDESMGCVLGQ 192
           +  LL K     +  EC +AF  IK  L+  PI+ PP    P  +     D ++G VLGQ
Sbjct: 199 LTSLLCKEVKFEFTQECHDAFQQIKQALISAPIVQPPDWDLPFEVMCDASDFAVGAVLGQ 258

Query: 193 QDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPI 252
           + +  KK HAIYY S+   D +  Y   EK   A+ +A ++ R YLV     + +    +
Sbjct: 259 RKD--KKLHAIYYASRTLDDAKRNYATTEKEFLAVVFAFEKFRSYLVGLKVIVHTDHAAL 316

Query: 253 KYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDE 312
           KY+ +      ++ RW +LL E+DI  + +K ++   +ADHL+   +DD  PI    P+E
Sbjct: 317 KYLMQNKDAKPRLLRWILLLQEFDIEVRDKKGVE-KCVADHLSRIRIDDDVPINDFLPEE 375

Query: 313 EIMYVKSKD 321
            I  + + +
Sbjct: 376 NIYMIDTAE 384



 Score =  117 bits (293), Expect = 3e-26
 Identities = 74/243 (30%), Positives = 118/243 (48%), Gaps = 22/243 (9%)

Query: 634 FSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIRNNIICRYG 693
           F  WGI+ +G I P  SN + +ILV +DY +KWVEA +       VV K  +  I   +G
Sbjct: 569 FDCWGINFMGPIPP--SNKNLYILVVVDYVSKWVEAIASPKNDSAVVMKLFKCIIFPHFG 626

Query: 694 VPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQKMVTT 753
           VP  +I+D G +  N ++  L  ++ ++H  ++PY PQ +G VE +N+ IK I++K V  
Sbjct: 627 VPRIVISDGGKHFINKILTKLLLQYGVQHRVATPYHPQTSGQVEVSNRQIKEILEKTV-- 684

Query: 754 YRDWHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIMEAKLSEAEW 813
                              ++  G TPF  +YG    LP+E+E  +   +          
Sbjct: 685 -----------------AFKTPLGTTPFHLLYGKACHLPVELEHKAAWTVKMLNFDIKSA 727

Query: 814 CQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKTGELVLKRRISQQP-DP 872
            + R  QLN ++E ++ A    + Y+ R K   DKK+  R F+  +   K+    +P   
Sbjct: 728 GERRLIQLNELDEIQIHAYDNSKLYKERTKAYHDKKILTRTFEPKDQKKKKTRETKPFKG 787

Query: 873 RGK 875
           RGK
Sbjct: 788 RGK 790


>At2g10780 pseudogene
          Length = 1611

 Score =  171 bits (434), Expect = 1e-42
 Identities = 95/286 (33%), Positives = 151/286 (52%), Gaps = 8/286 (2%)

Query: 1    MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
            MPFGL NA A + + M  +F D + + V ++++D++V S   E H E+L  + ERLR+++
Sbjct: 781  MPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLREHE 840

Query: 61   LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
            L     KC+F  RS   LG ++S +G+ VDP+K+R+I+E P P+   ++R FLG   Y  
Sbjct: 841  LFAKLSKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYR 900

Query: 121  RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFA 180
            RF+    +   P+ +L  K+    W+DEC+++F  +K  L   P+LV P EG P  +Y  
Sbjct: 901  RFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEGEPYTVYTD 960

Query: 181  VFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVN 240
                 +GCVL Q      K   I Y S++    E  Y   +    A+ +  K  R YL  
Sbjct: 961  ASIVGLGCVLMQ------KGSVIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLYG 1014

Query: 241  HTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEY--DIVFKTQKA 284
                + +    +KYIF +  +  +  RW  L+++Y  DI +   KA
Sbjct: 1015 AKVQIYTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGKA 1060



 Score = 92.8 bits (229), Expect = 8e-19
 Identities = 81/365 (22%), Positives = 156/365 (42%), Gaps = 28/365 (7%)

Query: 556  CVDEHEA--EQLMHDVHEGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQI 613
            CV    A  E+++ + H+  F  H   + M R L R  Y+W+ M+ D  +   KC  CQ+
Sbjct: 1152 CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMKKDVARWVAKCPTCQL 1210

Query: 614  YADKIHVPPHALNVISSP-WPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASY 672
               +  VP   L  +  P W +    +D +  +     + H  + V +D  TK     + 
Sbjct: 1211 VKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAI 1270

Query: 673  TNVT-KQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQ 731
            ++    +++A+   + I+  +G+P  I++D  T   +   +A  +      + S+ Y PQ
Sbjct: 1271 SDKDGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQ 1330

Query: 732  MNGVVEAANKNIKRIVQKMVTTY-RDWHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAV 790
             +   E   + ++ +++  V  +  +W + L      Y  + ++S G +P+  +YG    
Sbjct: 1331 TDEQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACR 1390

Query: 791  LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKV 850
             PL         + E +L          +++  ++ K  +A  R +SY        +K+ 
Sbjct: 1391 TPL-----CWTPVGERRLFGPTIVDETTERMKFLKIKLKEAQDRQKSYA-------NKRR 1438

Query: 851  HPREFKTGELVLKRRISQQP----DPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELP 906
               EF+ G+LV  + ++ +       R K +P Y GPY V +     A  L      +LP
Sbjct: 1439 KELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKL------DLP 1492

Query: 907  NPVNA 911
              +NA
Sbjct: 1493 PKLNA 1497


>At1g36830 hypothetical protein
          Length = 243

 Score =  168 bits (426), Expect = 1e-41
 Identities = 94/233 (40%), Positives = 144/233 (61%), Gaps = 7/233 (3%)

Query: 639 IDMIGRIEPKASNGHRFI---LVAIDYFTKWVEAASYTNVTKQVVAKFIRNNIICRYGVP 695
           +D++G +E  AS G + +   LV  DY TKW+EA ++  VT++ V  F+  NI+C++G+P
Sbjct: 1   MDVVGPME--ASGGKKKLKNLLVLTDYSTKWIEAKAFQQVTEKQVEDFLWENIVCQHGIP 58

Query: 696 SKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQKMVTTYR 755
            +IITDNGTNL +  ++A C+++KI    S+P+ PQ NG  EAANK I   ++K++ + +
Sbjct: 59  YEIITDNGTNLTSRKIKAFCDKWKIRLTTSTPHYPQGNGQAEAANKAILSNIKKILDSKK 118

Query: 756 D-WHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWC 814
             W ++L   L  YRTT R ST  TPFS  YG+EAV+P+   IPS+R       S+    
Sbjct: 119 SMWSDVLHGVLWAYRTTPRKSTQETPFSLAYGLEAVIPIVTIIPSVRRTASHANSDMN-T 177

Query: 815 QSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKTGELVLKRRIS 867
           Q   D ++ I+E+R  AM R Q+YQ  +   ++  +  R F+ GELVL++  S
Sbjct: 178 QMLRDNMDFIDERRDQAMIRVQNYQQAVTRYYNSNIKIRRFEVGELVLRKVFS 230


>At3g11970 hypothetical protein
          Length = 1499

 Score =  162 bits (409), Expect = 1e-39
 Identities = 95/295 (32%), Positives = 156/295 (52%), Gaps = 8/295 (2%)

Query: 1    MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
            MPFGL NA AT+Q  M  +F   + K V V+ DD++V S+  E+H ++L ++FE +R  K
Sbjct: 723  MPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANK 782

Query: 61   LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
            L     KC F V   + LG  +S +GIE DP K++A++E P P T KQ+RGFLG   Y  
Sbjct: 783  LFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYR 842

Query: 121  RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFA 180
            RF+       GP+   L K     W    Q+AF+ +K  L + P+L  P+  +  ++   
Sbjct: 843  RFVRSFGVIAGPL-HALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETD 901

Query: 181  VFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVN 240
               + +G VL Q+       H + Y+S++    +   ++ EK   A+ +A ++ RHYL+ 
Sbjct: 902  ACGQGIGAVLMQEG------HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQ 955

Query: 241  HTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 295
                + +    +KY+ E+   T    +W   L E+D   + ++  K +++AD L+
Sbjct: 956  SHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQG-KENVVADALS 1009



 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 85/327 (25%), Positives = 136/327 (40%), Gaps = 25/327 (7%)

Query: 569  VHEGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVI 628
            +H    G H+ G  ++ + ++  +YW  M  D   + R C  CQ         P  L  +
Sbjct: 1088 LHGSGVGGHS-GRDVTHQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL 1146

Query: 629  SSPWPFSMWGIDMIGRIEP-KASNGHRFILVAIDYFTKWVEAASYTN-VTKQVVAKFIRN 686
              P P ++W    +  IE    S G   I+V +D  +K     + ++  +   VA    +
Sbjct: 1147 --PIPDTIWSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLD 1204

Query: 687  NIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRI 746
            N+   +G P+ I++D      +   +       +    +S Y PQ +G  E  N+ ++  
Sbjct: 1205 NVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETY 1264

Query: 747  VQKMVTTYRD-WHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIME 805
            ++ M       W + L  A + Y T   SS+  TPF  VYG   V P  V +P L    E
Sbjct: 1265 LRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQ--VPP--VHLPYLP--GE 1318

Query: 806  AKLS-EAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKTGELVL-- 862
            +K++  A   Q R D L  ++   M A       Q RMK   D+    REF+ G+ V   
Sbjct: 1319 SKVAVVARSLQEREDMLLFLKFHLMRA-------QHRMKQFADQHRTEREFEIGDYVYVK 1371

Query: 863  ---KRRISQQPDPRGKWTPNYEGPYVV 886
                R+ S       K +P Y GPY +
Sbjct: 1372 LQPYRQQSVVMRANQKLSPKYFGPYKI 1398


>At1g36590 hypothetical protein
          Length = 1499

 Score =  162 bits (409), Expect = 1e-39
 Identities = 95/295 (32%), Positives = 156/295 (52%), Gaps = 8/295 (2%)

Query: 1    MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
            MPFGL NA AT+Q  M  +F   + K V V+ DD++V S+  E+H ++L ++FE +R  K
Sbjct: 723  MPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANK 782

Query: 61   LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
            L     KC F V   + LG  +S +GIE DP K++A++E P P T KQ+RGFLG   Y  
Sbjct: 783  LFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYR 842

Query: 121  RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFA 180
            RF+       GP+   L K     W    Q+AF+ +K  L + P+L  P+  +  ++   
Sbjct: 843  RFVRSFGVIAGPL-HALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETD 901

Query: 181  VFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVN 240
               + +G VL Q+       H + Y+S++    +   ++ EK   A+ +A ++ RHYL+ 
Sbjct: 902  ACGQGIGAVLMQEG------HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQ 955

Query: 241  HTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 295
                + +    +KY+ E+   T    +W   L E+D   + ++  K +++AD L+
Sbjct: 956  SHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQG-KENVVADALS 1009



 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 84/327 (25%), Positives = 136/327 (40%), Gaps = 25/327 (7%)

Query: 569  VHEGTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVI 628
            +H    G H+ G  ++ + ++  +Y   M  D   + R C  CQ         P  L  +
Sbjct: 1088 LHGSGVGGHS-GRDVTHQRVKGLFYSKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL 1146

Query: 629  SSPWPFSMWGIDMIGRIEP-KASNGHRFILVAIDYFTKWVEAASYTN-VTKQVVAKFIRN 686
              P P ++W    +  IE    S G   I+V +D  +K     + ++  +   VA+   +
Sbjct: 1147 --PIPDTIWSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAQAYLD 1204

Query: 687  NIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRI 746
            N+   +G P+ I++D      +   +       +    +S Y PQ +G  E  N+ ++  
Sbjct: 1205 NVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETY 1264

Query: 747  VQKMVTTYRD-WHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIME 805
            ++ M       W + L  A + Y T   SS+  TPF  VYG   V P  V +P L    E
Sbjct: 1265 LRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQ--VPP--VHLPYLP--GE 1318

Query: 806  AKLS-EAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKTGELVL-- 862
            +K++  A   Q R D L  ++   M A       Q RMK   D+    REF+ G+ V   
Sbjct: 1319 SKVAVVARSLQEREDMLLFLKFHLMRA-------QHRMKQFADQHRTEREFEIGDYVYVK 1371

Query: 863  ---KRRISQQPDPRGKWTPNYEGPYVV 886
                R+ S       K +P Y GPY +
Sbjct: 1372 LQPYRQQSVVMRANQKLSPKYFGPYKI 1398


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.322    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,570,054
Number of Sequences: 26719
Number of extensions: 962628
Number of successful extensions: 2450
Number of sequences better than 10.0: 128
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 2128
Number of HSP's gapped (non-prelim): 227
length of query: 919
length of database: 11,318,596
effective HSP length: 108
effective length of query: 811
effective length of database: 8,432,944
effective search space: 6839117584
effective search space used: 6839117584
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)