BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146807.3 - phase: 0 /pseudo
(1604 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60170 putative protein 464 e-130
At1g58140 hypothetical protein 450 e-126
At1g48710 hypothetical protein 449 e-126
At3g61330 copia-type polyprotein 445 e-125
At2g15650 putative retroelement pol polyprotein 443 e-124
At2g20460 putative retroelement pol polyprotein 388 e-107
At4g10690 retrotransposon like protein 387 e-107
At3g25450 hypothetical protein 387 e-107
At1g53810 387 e-107
At1g31210 putative reverse transcriptase 380 e-105
At1g59265 polyprotein, putative 376 e-104
At2g16000 putative retroelement pol polyprotein 375 e-103
At1g58889 polyprotein, putative 375 e-103
At4g10990 putative retrotransposon polyprotein 374 e-103
At1g70010 hypothetical protein 374 e-103
At4g27210 putative protein 369 e-102
At4g02960 putative polyprotein of LTR transposon 366 e-101
At4g16870 retrotransposon like protein 362 e-100
At1g44510 polyprotein, putative 362 e-99
At2g16670 putative retroelement pol polyprotein 356 5e-98
>At3g60170 putative protein
Length = 1339
Score = 464 bits (1193), Expect = e-130
Identities = 225/507 (44%), Positives = 340/507 (66%), Gaps = 3/507 (0%)
Query: 1101 EEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKAR 1160
++A+ D W AM+ E+ +N+ W+L P IG KWV++ KLNE GEV + KAR
Sbjct: 831 DDAVKDKIWREAMEHEIESIVKNNTWELTTLPKGFTPIGVKWVYKTKLNEDGEVDKYKAR 890
Query: 1161 LVAQGYSQQEDIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVY 1220
LVA+GY+Q IDYTE FAPVARL+ +R +L+ + ++Q+DVK AFL+G ++EEVY
Sbjct: 891 LVAKGYAQCYGIDYTEVFAPVARLDTVRTILAISSQFNWEIFQLDVKSAFLHGELKEEVY 950
Query: 1221 VKQPPGFEDLKHPDHVYKLKKSIYGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTL 1280
V+QP GF + VYKL+K++YGLKQAP+AWY R+ + +K +FER + TLF +T
Sbjct: 951 VRQPEGFIREGEEEKVYKLRKALYGLKQAPRAWYSRIEAYFLKEEFERCPSEHTLFTKTR 1010
Query: 1281 KKDILIVQIYVDDIIFGSTNASLCKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYV 1340
+ILIV +YVDD+IF ++ ++C +F K M EF+MS +G++K FLGI++ QS G+++
Sbjct: 1011 VGNILIVSLYVDDLIFTGSDKAMCDEFKKSMMLEFEMSDLGKMKHFLGIEVKQSDGGIFI 1070
Query: 1341 HQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRP 1400
Q +Y +E+L +F +++ + P+ P L+K++ G VD+ +++ ++GSL+YLT +RP
Sbjct: 1071 CQRRYAREVLARFGMDESNAVKNPIVPGTKLTKDENGEKVDETMFKQLVGSLMYLTVTRP 1130
Query: 1401 DILFSVCLCARFQSDSRESHLTAVKRIFRYLKGTTNLGLLY--RKSLDYKLIGFCDADYA 1458
D+++ VCL +RF S+ R SH A KRI RYLKGT LG+ Y RK+ KL+ F D+DYA
Sbjct: 1131 DLMYGVCLISRFMSNPRMSHWLAAKRILRYLKGTVELGIFYRRRKNRSLKLMAFTDSDYA 1190
Query: 1459 GDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA*YISAASCCTQLLWMKHQLEDY 1518
GD +R+STSG + I WASK+Q +A+ST EA YI+AA C Q +W++ LE
Sbjct: 1191 GDLNDRRSTSGFVFLMASGAICWASKKQPVVALSTTEAEYIAAAFCACQCVWLRKVLEKL 1250
Query: 1519 QINANIIPIF-CDNTAAICLSKNPILHSRAKHIEIKHHFIRYYVQKGILDIQFIDTEHQW 1577
+ CDN++ I LSK+P+LH ++KHIE++ H++R V ++ +++ TE Q
Sbjct: 1251 GAEEKSATVINCDNSSTIQLSKHPVLHGKSKHIEVRFHYLRDLVNGDVVKLEYCPTEDQV 1310
Query: 1578 ADIFTKPLSVERFDFIKKNLNMHFVSD 1604
ADIFTKPL +E+F+ ++ L M +S+
Sbjct: 1311 ADIFTKPLKLEQFEKLRALLGMVNMSE 1337
Score = 67.4 bits (163), Expect = 6e-11
Identities = 47/185 (25%), Positives = 77/185 (41%), Gaps = 35/185 (18%)
Query: 6 QYELFRMKDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSKILRSLPSRWRPKVTAIEE 65
++EL MK+ E I+ R T+V ++ + S VSKILRSL ++ V +IEE
Sbjct: 121 EFELLAMKEGEKIDTFLGRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEE 180
Query: 66 AKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESP 125
+ DL+TLS+++L SL VHE LN H +++ + + + ++ S
Sbjct: 181 SNDLSTLSIDELHGSLLVHEQRLNGHVQEEQALKVTHEERPSQGRGRGVFRGSRGR---- 236
Query: 126 DGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADC 185
RG ++ C+ C GHF +C
Sbjct: 237 -------------------------------GRGRGRSGTNRAIVECYKCHNLGHFQYEC 265
Query: 186 PDLQK 190
P+ +K
Sbjct: 266 PEWEK 270
>At1g58140 hypothetical protein
Length = 1320
Score = 450 bits (1158), Expect = e-126
Identities = 222/495 (44%), Positives = 324/495 (64%), Gaps = 3/495 (0%)
Query: 1101 EEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKAR 1160
+EA+ W AM EE+ Q+ND W+L P IG KWV++ K N +GEV R KAR
Sbjct: 810 QEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKAR 869
Query: 1161 LVAQGYSQQEDIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVY 1220
LVA+GYSQ+ IDY E FAPVARLE +RL++S A + ++QMDVK AFLNG +EEEVY
Sbjct: 870 LVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVY 929
Query: 1221 VKQPPGFEDLKHPDHVYKLKKSIYGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTL 1280
++QP G+ D V +LKK++YGLKQAP+AW R+ + + DF + + L+ +
Sbjct: 930 IEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQ 989
Query: 1281 KKDILIVQIYVDDIIFGSTNASLCKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYV 1340
K+DILI +YVDD+IF N S+ ++F K M EF+M+ +G + ++LGI++ Q G+++
Sbjct: 990 KEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFI 1049
Query: 1341 HQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRP 1400
Q Y KE+LKKFK++D + TPM LSK++ G VD ++ ++GSL YLT +RP
Sbjct: 1050 TQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRP 1109
Query: 1401 DILFSVCLCARFQSDSRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGD 1460
DIL++V + +R+ +H A KRI RY+KGT N GL Y + DYKL+G+ D+D+ GD
Sbjct: 1110 DILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGD 1169
Query: 1461 RIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQI 1520
+RKSTSG ++G+ +W SK+Q + +ST EA Y++A SC +W+++ L++ +
Sbjct: 1170 VDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSL 1229
Query: 1521 -NANIIPIFCDNTAAICLSKNPILHSRAKHIEIKHHFIRYYVQKGILDIQFIDTEHQWAD 1579
IF DN +AI L+KNP+ H R+KHI+ ++H+IR V K + ++++ T Q AD
Sbjct: 1230 PQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVAD 1289
Query: 1580 IFTKPLSVERFDFIK 1594
IFTKPL +R DFIK
Sbjct: 1290 IFTKPL--KREDFIK 1302
Score = 59.7 bits (143), Expect = 1e-08
Identities = 50/223 (22%), Positives = 100/223 (44%), Gaps = 14/223 (6%)
Query: 6 QYELFRMKDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSKILRSLPSRWRPKVTAIEE 65
++E +MK+ E + + +SR T+ L+ + + K+LRSL ++ VT IEE
Sbjct: 119 EFEALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEE 178
Query: 66 AKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSI---ALPSKGKTSKSSKAYKASESEE 122
KDL +++E L+ SL+ +E E KK + I L + ++ ++Y+ +
Sbjct: 179 TKDLEAMTIEQLLGSLQAYE------EKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQ 232
Query: 123 ESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFI 182
G + + K G K+ + C+NC K GH+
Sbjct: 233 VRGRGRGGYGNGRGWRPHEDNTNQRGENSSRGRGK-GHPKSRYDKSSVKCYNCGKFGHYA 291
Query: 183 ADCPDLQKEKYKVKSKKSSFSSSKFRKQIKKSLMATWEDLDSE 225
++C +K++ +K+++ K +++ LMA+++ + E
Sbjct: 292 SECKAPSNKKFE---EKANYVEEKIQEE-DMLLMASYKKDEQE 330
>At1g48710 hypothetical protein
Length = 1352
Score = 449 bits (1154), Expect = e-126
Identities = 224/509 (44%), Positives = 328/509 (64%), Gaps = 3/509 (0%)
Query: 1087 SLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRN 1146
+L L + E +EA+ W AM EE+ Q+ND W+L P IG KWV++
Sbjct: 828 TLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKTIGVKWVYKA 887
Query: 1147 KLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDV 1206
K N +GEV R KARLVA+GY Q+ IDY E FAPVARLE +RL++S A + ++QMDV
Sbjct: 888 KKNSKGEVERYKARLVAKGYIQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDV 947
Query: 1207 KGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQAPKAWYDRLSNFLIKNDF 1266
K AFLNG +EEEVY++QP G+ D V +LKK++YGLKQAP+AW R+ + + DF
Sbjct: 948 KSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDF 1007
Query: 1267 ERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSKLMQDEFKMSMMGELKFF 1326
+ + L+ + K+DILI +YVDD+IF N S+ ++F K M EF+M+ +G + ++
Sbjct: 1008 IKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYY 1067
Query: 1327 LGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYR 1386
LGI++ Q G+++ Q Y KE+LKKFK++D + TPM LSK++ G VD ++
Sbjct: 1068 LGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFK 1127
Query: 1387 GMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFRYLKGTTNLGLLYRKSLD 1446
++GSL YLT +RPDIL++V + +R+ +H A KRI RY+KGT N GL Y + D
Sbjct: 1128 SLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSD 1187
Query: 1447 YKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA*YISAASCCT 1506
YKL+G+ D+D+ GD +RKSTSG ++G+ +W SK+Q + +ST EA Y++A SC
Sbjct: 1188 YKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATSCVC 1247
Query: 1507 QLLWMKHQLEDYQI-NANIIPIFCDNTAAICLSKNPILHSRAKHIEIKHHFIRYYVQKGI 1565
+W+++ L++ + IF DN +AI L+KNP+ H R+KHI+ ++H+IR V K
Sbjct: 1248 HAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKD 1307
Query: 1566 LDIQFIDTEHQWADIFTKPLSVERFDFIK 1594
+ ++++ T Q ADIFTKPL +R DFIK
Sbjct: 1308 VQLEYVKTHDQVADIFTKPL--KREDFIK 1334
Score = 59.7 bits (143), Expect = 1e-08
Identities = 50/223 (22%), Positives = 100/223 (44%), Gaps = 14/223 (6%)
Query: 6 QYELFRMKDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSKILRSLPSRWRPKVTAIEE 65
++E +MK+ E + + +SR T+ L+ + + K+LRSL ++ VT IEE
Sbjct: 119 EFEALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEE 178
Query: 66 AKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSI---ALPSKGKTSKSSKAYKASESEE 122
KDL +++E L+ SL+ +E E KK + I L + ++ ++Y+ +
Sbjct: 179 TKDLEAMTIEQLLGSLQAYE------EKKKKKEDIIEQVLNMQITKEENGQSYQRRGGGQ 232
Query: 123 ESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFI 182
G + + K G K+ + C+NC K GH+
Sbjct: 233 VRGRGRGGYGNGRGWRPHEDNTNQRGENSSRGRGK-GHPKSRYDKSSVKCYNCGKFGHYA 291
Query: 183 ADCPDLQKEKYKVKSKKSSFSSSKFRKQIKKSLMATWEDLDSE 225
++C +K++ +K+++ K +++ LMA+++ + E
Sbjct: 292 SECKAPSNKKFE---EKANYVEEKIQEE-DMLLMASYKKDEQE 330
>At3g61330 copia-type polyprotein
Length = 1352
Score = 445 bits (1145), Expect = e-125
Identities = 220/505 (43%), Positives = 323/505 (63%), Gaps = 1/505 (0%)
Query: 1087 SLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRN 1146
+L L + E ++A+ W AM EE+ Q+ND W+L P IG KWV++
Sbjct: 828 TLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKA 887
Query: 1147 KLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDV 1206
K N +GEV R KARLVA+GYSQ+ IDY E FAPVARLE +RL++S A + ++QMDV
Sbjct: 888 KKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDV 947
Query: 1207 KGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQAPKAWYDRLSNFLIKNDF 1266
K AFLNG +EEEVY++QP G+ D V +LKK +YGLKQAP+AW R+ + + DF
Sbjct: 948 KSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDF 1007
Query: 1267 ERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSKLMQDEFKMSMMGELKFF 1326
+ + L+ + K+DILI +YVDD+IF N S+ ++F K M EF+M+ +G + ++
Sbjct: 1008 IKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYY 1067
Query: 1327 LGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYR 1386
LGI++ Q G+++ Q Y KE+LKKFK++D + TPM LSK++ G VD ++
Sbjct: 1068 LGIEVKQEDNGIFITQEGYAKEVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPTTFK 1127
Query: 1387 GMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFRYLKGTTNLGLLYRKSLD 1446
++GSL YLT +RPDIL++V + +R+ +H A KRI RY+KGT N GL Y + D
Sbjct: 1128 SLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSD 1187
Query: 1447 YKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA*YISAASCCT 1506
YKL+G+ D+D+ GD +RKSTSG ++G+ +W SK+Q + +ST EA Y++A SC
Sbjct: 1188 YKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVC 1247
Query: 1507 QLLWMKHQLEDYQI-NANIIPIFCDNTAAICLSKNPILHSRAKHIEIKHHFIRYYVQKGI 1565
+W+++ L++ + IF DN +AI L+KNP+ H R+KHI+ ++H+IR V K
Sbjct: 1248 HAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKD 1307
Query: 1566 LDIQFIDTEHQWADIFTKPLSVERF 1590
+ ++++ T Q AD FTKPL E F
Sbjct: 1308 VQLEYVKTHDQVADFFTKPLKRENF 1332
Score = 60.5 bits (145), Expect = 8e-09
Identities = 55/239 (23%), Positives = 105/239 (43%), Gaps = 15/239 (6%)
Query: 6 QYELFRMKDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSKILRSLPSRWRPKVTAIEE 65
++E +MK+ E + + +SR T+ L+ + + K+LRSL ++ VT IEE
Sbjct: 119 EFEALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEE 178
Query: 66 AKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIA---LPSKGKTSKSSKAYKASESEE 122
KDL +++E L+ SL+ +E E KK + IA L + ++ ++Y+ +
Sbjct: 179 TKDLEAMTIEQLLGSLQAYE------EKKKKKEDIAEQVLNMQITKEENGQSYQRRGGGQ 232
Query: 123 ESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFI 182
G + + K G K+ + C+NC K GH+
Sbjct: 233 VRGRGRGGYGNGRGWRPHEDNTNQRGENSSRGRGK-GHPKSRYDKSSVKCYNCGKFGHYA 291
Query: 183 ADCPDLQKEKYKVKSKKSSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAM 241
++C +K++ +K+ + K +++ LMA+++ D + + K D A M
Sbjct: 292 SECKAPSNKKFE---EKAHYVEEKIQEE-DMLLMASYKK-DEQKENHKWYLDSGASNHM 345
>At2g15650 putative retroelement pol polyprotein
Length = 1347
Score = 443 bits (1139), Expect = e-124
Identities = 237/593 (39%), Positives = 359/593 (59%), Gaps = 14/593 (2%)
Query: 1010 QEVESSPEAEITPEAESNSEAEPSSIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELII 1069
QE S ++I A +N E E SS V ++ ++ ++ ++ PK K+KS +E++
Sbjct: 761 QETSSHDLSQIDDHA-NNGEGETSSHVLSQVNDQEERETSES---PK-KYKSM--KEIL- 812
Query: 1070 GSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLV 1129
+ +PR Q L++ E +T +EA D W AM EE+ ++N W LV
Sbjct: 813 --EKAPRMENDEAAQGIEAC-LVANEEPQTYDEARGDKEWEEAMNEEIKVIEKNRTWKLV 869
Query: 1130 PKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRL 1189
KP +KN+I KW+++ K + G + KARLVA+G+SQ+ IDY ETFAPV+R + IR
Sbjct: 870 DKPEKKNVISVKWIYKIKTDASGNHVKHKARLVARGFSQEYGIDYLETFAPVSRYDTIRA 929
Query: 1190 LLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQA 1249
LL+YA LYQMDVK AFLNG +EEEVYV QPPGF + V +L K++YGLKQA
Sbjct: 930 LLAYAAQMKWRLYQMDVKSAFLNGELEEEVYVTQPPGFVIEGKEEKVLRLYKALYGLKQA 989
Query: 1250 PKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSK 1309
P+AWY+R+ ++ I+N F R D L+ + +D+LIV +YVDD+I N L F K
Sbjct: 990 PRAWYERIDSYFIQNGFARSMNDAALYSKKKGEDVLIVSLYVDDLIITGNNTHLINTFKK 1049
Query: 1310 LMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTC 1369
M+DEF+M+ +G L +FLG+++NQ G+++ Q KY +L+ KF +++ K ++TP+ P
Sbjct: 1050 NMKDEFEMTDLGLLNYFLGMEVNQDDSGIFLSQEKYANKLIDKFGMKESKSVSTPLTPQG 1109
Query: 1370 TLS--KEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRI 1427
+ D D YR ++G LLYL ASRPD++++ +R+ S H KR+
Sbjct: 1110 KRKGVEGDDKEFADPTKYRRIVGGLLYLCASRPDVMYASSYLSRYMSSPSIQHYQEAKRV 1169
Query: 1428 FRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQA 1487
RY+KGT+N G+L+ +L+G+ D+D+ G ++KST+G LG + W S +Q
Sbjct: 1170 LRYVKGTSNFGVLFTSKETPRLVGYSDSDWGGSLEDKKSTTGYVFTLGLAMFCWQSCKQQ 1229
Query: 1488 TIAMSTAEA*YISAASCCTQLLWMKHQLEDYQIN-ANIIPIFCDNTAAICLSKNPILHSR 1546
T+A STAEA YI+ + Q +W++ ED+ + IPI CDN +AI + +NP+ H R
Sbjct: 1230 TVAQSTAEAEYIAVCAATNQAIWLQRLFEDFGLKFKEGIPILCDNKSAIAIGRNPVQHRR 1289
Query: 1547 AKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
KHIEIK+HF+R KG++ +++ E Q AD+ TK LSV RF+ +++ L +
Sbjct: 1290 TKHIEIKYHFVREAEHKGLIQLEYCKGEDQLADVLTKALSVSRFEGLRRKLGV 1342
Score = 61.2 bits (147), Expect = 5e-09
Identities = 45/193 (23%), Positives = 89/193 (45%), Gaps = 13/193 (6%)
Query: 3 LVHQYELFRMKDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSKILRSLPSRWRPKVTA 62
L +YE +M D+++I+ + L L + + + KIL SLP+++ V+
Sbjct: 118 LRREYENLKMYDNDNIKTFTDKLIVLEIQLTYHGEKKTNTQLIQKILISLPAKFDSIVSV 177
Query: 63 IEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEE 122
+E+ +DL+ L++ +L+ LK E + E S K + + SKG+ ES
Sbjct: 178 LEQTRDLDALTMSELLGILKAQEARVTAREESTKEGAFYVRSKGR-----------ESGF 226
Query: 123 ESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFI 182
+ + ++ +Q K ++ ++ + K + +K+ + K C+ C K GH+
Sbjct: 227 KQDNTNNRVNQDKKWCGFHKSSKH-TEEECREKPKNDDHGKNKRSNIK-CYKCGKIGHYA 284
Query: 183 ADCPDLQKEKYKV 195
+C KE+ V
Sbjct: 285 NECRSKNKERAHV 297
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 388 bits (996), Expect = e-107
Identities = 195/506 (38%), Positives = 307/506 (60%), Gaps = 4/506 (0%)
Query: 1098 KTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRK 1157
++ EA W A+ +E+ +R D W++ P K +G KWVF K + G + R
Sbjct: 948 QSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCKWVFTVKFHADGSLERF 1007
Query: 1158 KARLVAQGYSQQEDIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEE 1217
KAR+VA+GY+Q+E +DYTETF+PVA++ ++LLL + + L Q+D+ AFLNG +EE
Sbjct: 1008 KARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVSASKKWYLNQLDISNAFLNGDLEE 1067
Query: 1218 EVYVKQPPGFEDLKH----PDHVYKLKKSIYGLKQAPKAWYDRLSNFLIKNDFERGQVDT 1273
+Y+K P G+ D+K P+ V +LKKSIYGLKQA + W+ + SN L+ FE+ D
Sbjct: 1068 TIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGFEKQHGDH 1127
Query: 1274 TLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSKLMQDEFKMSMMGELKFFLGIQINQ 1333
TLF R + + +++ +YVDDI+ ST + ++ ++ FK+ +G LK+FLG+++ +
Sbjct: 1128 TLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLEVAR 1187
Query: 1334 SKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLL 1393
+ EG+ + Q KY ELL + DCK + PM P LSK D + D+++YR ++G L+
Sbjct: 1188 TSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGKLM 1247
Query: 1394 YLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFC 1453
YLT +RPDI F+V +F S R +HL AV ++ +Y+KGT GL Y D L G+
Sbjct: 1248 YLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSAEDDLTLKGYT 1307
Query: 1454 DADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA*YISAASCCTQLLWMKH 1513
DAD+ R+ST+G F+G +LISW SK+Q T++ S+AEA Y + A ++ W+
Sbjct: 1308 DADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASCEMAWLST 1367
Query: 1514 QLEDYQINANIIPIFCDNTAAICLSKNPILHSRAKHIEIKHHFIRYYVQKGILDIQFIDT 1573
L ++++ + ++ D+TAA+ ++ NP+ H R KHIEI H +R + G L + + T
Sbjct: 1368 LLLALRVHSGVPILYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLDNGQLKLLHVKT 1427
Query: 1574 EHQWADIFTKPLSVERFDFIKKNLNM 1599
+ Q ADI TKPL +F + +++
Sbjct: 1428 KDQVADILTKPLFPYQFAHLLSKMSI 1453
>At4g10690 retrotransposon like protein
Length = 1515
Score = 387 bits (993), Expect = e-107
Identities = 215/566 (37%), Positives = 323/566 (56%), Gaps = 12/566 (2%)
Query: 1026 SNSEAEPSSIVQNESASED-FQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQ 1084
++SE SS + +S + F+D+ +Q ++ PE S R +S +
Sbjct: 848 TDSETAISSAMTPQSINVSLFEDSDFPPLQSVISSTTAAPET----SHPMITRAKSGITK 903
Query: 1085 EESLIGLLSII----ELKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGT 1140
L S+ E K+V+EAL D+GW AM EE+ D WDLVP ++G
Sbjct: 904 PNPKYALFSVKSNYPEPKSVKEALKDEGWTNAMGEEMGTMHETDTWDLVPPEMVDRLLGC 963
Query: 1141 KWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRLLLSYAINHGII 1200
KWVF+ KLN G + R KARLVA+GY Q+E +DY ET++PV R +R +L A +
Sbjct: 964 KWVFKTKLNSDGSLDRLKARLVARGYEQEEGVDYVETYSPVVRSATVRSILHVATINKWS 1023
Query: 1201 LYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQAPKAWYDRLSNF 1260
L Q+DVK AFL+ ++E V++ QPPGFED PD+V KLKK+IY LKQAP+AW+D+ S++
Sbjct: 1024 LKQLDVKNAFLHDELKETVFMTQPPGFEDPSRPDYVCKLKKAIYDLKQAPRAWFDKFSSY 1083
Query: 1261 LIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSKLMQDEFKMSMM 1320
L+K F D +LF +D++ + +YVDD+I N L + ++ EF+M M
Sbjct: 1084 LLKYGFICSFSDPSLFVYLKGRDVMFLLLYVDDMILTGNNDVLLQQLLNILSTEFRMKDM 1143
Query: 1321 GELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVV 1380
G L +FLGIQ + +G+++ Q KYT +LL + DC M TP+ L + +
Sbjct: 1144 GALHYFLGIQAHYHNDGLFLSQEKYTSDLLVNAGMSDCSSMPTPLQ--LDLLQGNNKPFP 1201
Query: 1381 DQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFRYLKGTTNLGLL 1440
+ +R + G L YLT +RPDI F+V + S +KRI YLKGT +G+
Sbjct: 1202 EPTYFRRLAGKLQYLTLTRPDIQFAVNFVCQKMHAPTMSDFHLLKRILHYLKGTMTMGIN 1261
Query: 1441 YRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA*YIS 1500
+ D L + D+D+AG + R+ST G C FLG N+ISW++KR T++ S+ EA Y +
Sbjct: 1262 LSSNTDSVLRCYSDSDWAGCKDTRRSTGGFCTFLGYNIISWSAKRHPTVSKSSTEAEYRT 1321
Query: 1501 AASCCTQLLWMKHQLEDYQINANIIP-IFCDNTAAICLSKNPILHSRAKHIEIKHHFIRY 1559
+ +++ W+ L++ + IP ++CDN +A+ LS NP LHSR+KH ++ ++++R
Sbjct: 1322 LSFAASEVSWIGFLLQEIGLPQQQIPEMYCDNLSAVYLSANPALHSRSKHFQVDYYYVRE 1381
Query: 1560 YVQKGILDIQFIDTEHQWADIFTKPL 1585
V G L ++ I Q ADIFTK L
Sbjct: 1382 RVALGALTVKHIPASQQLADIFTKSL 1407
>At3g25450 hypothetical protein
Length = 1343
Score = 387 bits (993), Expect = e-107
Identities = 212/600 (35%), Positives = 347/600 (57%), Gaps = 29/600 (4%)
Query: 1011 EVESSPEAEITPEAESN-SEAEPSSIVQNESASEDFQDNTQQVIQPKFKHK-----SSHP 1064
E E + EAEI E E+ EAE Q++ + + + +QVI+P +
Sbjct: 750 EPEETEEAEINGEDENIIEEAETEEHDQSQEEPQPVRRSQRQVIRPNYLKDYVLCAEIEA 809
Query: 1065 EELIIGSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRND 1124
E L++ D P +EA W A +EE+ ++N
Sbjct: 810 EHLLLAVNDEPW----------------------DFKEANKSKEWRDACKEEIQSIEKNR 847
Query: 1125 VWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARL 1184
W LV P IG KWVF+ K N G + + KARLVA+GY Q+ +D+ E FAPVAR+
Sbjct: 848 TWSLVDLPVGSKAIGVKWVFKLKHNSDGSINKYKARLVAKGYVQRHGVDFEEVFAPVARI 907
Query: 1185 EAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIY 1244
E +RL+++ A ++G ++ +DVK AFL+G + E+VYV QP GF + + + VYKL K++Y
Sbjct: 908 ETVRLIIALAASNGWEIHHLDVKTAFLHGELREDVYVSQPEGFTNKESKEKVYKLHKALY 967
Query: 1245 GLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLC 1304
GL+QAP+AW +L+ L + FE+ + +L+R+ ++IL+V +YVDD++ +N +
Sbjct: 968 GLRQAPRAWNTKLNEILKELKFEKCHKEPSLYRKQEGENILVVAVYVDDLLVTGSNLDII 1027
Query: 1305 KDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTP 1364
+F K M +F+MS +G+L ++LGI++ QSK+G+ + Q +Y K++L++ + C +NTP
Sbjct: 1028 LNFKKGMVGKFEMSDLGKLTYYLGIEVLQSKDGITLKQERYAKKILEEAGMSKCNTVNTP 1087
Query: 1365 MHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAV 1424
M + LSK +D+ YR IG L YL +RPD+ ++V + +R+ + RESH A+
Sbjct: 1088 MIASLELSKAQDEKRIDETDYRRNIGCLRYLLHTRPDLSYNVGILSRYLQEPRESHGAAL 1147
Query: 1425 KRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASK 1484
K+I RYL+GTT+ GL ++K + LIG+ D+ + D + KST G+ +L + I+W S+
Sbjct: 1148 KQILRYLQGTTSHGLYFKKGENAGLIGYSDSSHNVDLDDGKSTGGHIFYLNDCPITWCSQ 1207
Query: 1485 RQATIAMSTAEA*YISAASCCTQLLWMKHQL-EDYQINANIIPIFCDNTAAICLSKNPIL 1543
+Q + +S+ EA +++A Q +W++ L E + I DN +AI L+KNP+
Sbjct: 1208 KQQVVTLSSCEAEFMAATEAAKQAIWLQELLAEVIGTECEKVTIRVDNKSAIALTKNPVF 1267
Query: 1544 HSRAKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNMHFVS 1603
H R+KHI ++HFIR V+ G ++++ + Q ADI TK L +F +++ + + VS
Sbjct: 1268 HGRSKHIHRRYHFIRECVENGQIEVEHVPGVRQKADILTKALGKIKFLEMRELIGVQGVS 1327
Score = 46.6 bits (109), Expect = 1e-04
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 19/167 (11%)
Query: 3 LVHQYELFRMKDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSKILRSLP-SRWRPKVT 61
L+ +++ +MKD E+I++ R + L + S V K L+SLP ++ V
Sbjct: 110 LMAEFDKLKMKDSETIDDYVGRISEITTKAAALGEDIEESKIVKKFLKSLPRKKYIHIVA 169
Query: 62 AIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESE 121
A+E+ DL T + ED+ +K +E + + + S + +GK +E E
Sbjct: 170 ALEQVLDLKTTTFEDIAGRIKTYEDRVWDDDDSHE-------DQGKL--------MTEVE 214
Query: 122 EESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKED 168
EE D +E++ V + K + R K R + K+ED
Sbjct: 215 EEVVDDLEEEEEEVINKEIKAKSHVIDRLLKLI---RLQEQKEKEED 258
>At1g53810
Length = 1522
Score = 387 bits (993), Expect = e-107
Identities = 205/520 (39%), Positives = 298/520 (56%), Gaps = 10/520 (1%)
Query: 1092 LSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQ 1151
+SI E KTV EAL GW AMQEE+ + + W LVP N++G+ WVFR KL+
Sbjct: 911 VSIPEPKTVTEALKHPGWNNAMQEEMGNCKETETWTLVPYSPNMNVLGSMWVFRTKLHAD 970
Query: 1152 GEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKGAFL 1211
G + + KARLVA+G+ Q+E IDY ET++PV R +RL+L A L QMDVK AFL
Sbjct: 971 GSLDKLKARLVAKGFKQEEGIDYLETYSPVVRTPTVRLILHVATVLKWELKQMDVKNAFL 1030
Query: 1212 NGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQAPKAWYDRLSNFLIKNDFERGQV 1271
+G + E VY++QP GF D PDHV L KS+YGLKQ+P+AW+DR SNFL++ F
Sbjct: 1031 HGDLTETVYMRQPAGFVDKSKPDHVCLLHKSLYGLKQSPRAWFDRFSNFLLEFGFICSLF 1090
Query: 1272 DTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSKLMQDEFKMSMMGELKFFLGIQI 1331
D +LF + D++++ +YVDD++ N+ + EF+M MG++ +FLGIQI
Sbjct: 1091 DPSLFVYSSNNDVILLLLYVDDMVITGNNSQSLTHLLAALNKEFRMKDMGQVHYFLGIQI 1150
Query: 1332 NQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGS 1391
G+++ Q KY ++LL + +C M TP+ D +R + G
Sbjct: 1151 QTYDGGLFMSQQKYAEDLLITASMANCSPMPTPLPLQLDRVSNQDEVFSDPTYFRSLAGK 1210
Query: 1392 LLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFRYLKGTTNLGLLYRKS------- 1444
L YLT +RPDI F+V + S +KRI RY+KGT ++G+ Y +
Sbjct: 1211 LQYLTLTRPDIQFAVNFVCQKMHQPSVSDFNLLKRILRYIKGTVSMGIQYNSNSSSVVSA 1270
Query: 1445 --LDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA*YISAA 1502
DY L + D+DYA + R+S G C F+G+N+ISW+SK+Q T++ S+ EA Y S +
Sbjct: 1271 YESDYDLSAYSDSDYANCKETRRSVGGYCTFMGQNIISWSSKKQPTVSRSSTEAEYRSLS 1330
Query: 1503 SCCTQLLWMKHQLEDYQINANIIP-IFCDNTAAICLSKNPILHSRAKHIEIKHHFIRYYV 1561
+++ WM L + ++ P +FCDN +A+ L+ NP H+R KH ++ HH+IR V
Sbjct: 1331 ETASEIKWMSSILREIGVSLPDTPELFCDNLSAVYLTANPAFHARTKHFDVDHHYIRERV 1390
Query: 1562 QKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNMHF 1601
L ++ I Q ADIFTK L E F ++ L + F
Sbjct: 1391 ALKTLVVKHIPGHLQLADIFTKSLPFEAFTRLRFKLGVDF 1430
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 380 bits (976), Expect = e-105
Identities = 210/581 (36%), Positives = 332/581 (56%), Gaps = 20/581 (3%)
Query: 1025 ESNSEAEPSSIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQ 1084
E ++ EP+S NE + E+ +++ + +E +I S R+++ ++
Sbjct: 795 EQLTDPEPTS--NNEGSDEEVNPVAEEI---------AANQEQVINSHAMTTRSKAGIQK 843
Query: 1085 EESLIGLLS----IIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGT 1140
+ L++ E KT+ A+ GW A+ EE+N+ W LVP NI+ +
Sbjct: 844 PNTRYALITSRMNTAEPKTLASAMKHPGWNEAVHEEINRVHMLHTWSLVPPTDDMNILSS 903
Query: 1141 KWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRLLLSYAINHGII 1200
KWVF+ KL+ G + + KARLVA+G+ Q+E +DY ETF+PV R IRL+L + + G
Sbjct: 904 KWVFKTKLHPDGSIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDVSTSKGWP 963
Query: 1201 LYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQAPKAWYDRLSNF 1260
+ Q+DV AFL+G ++E V++ QP GF D + P HV +L K+IYGLKQAP+AW+D SNF
Sbjct: 964 IKQLDVSNAFLHGELQEPVFMYQPSGFIDPQKPTHVCRLTKAIYGLKQAPRAWFDTFSNF 1023
Query: 1261 LIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSKLMQDEFKMSMM 1320
L+ F + D +LF IL + +YVDDI+ ++ SL +D + +++ F M +
Sbjct: 1024 LLDYGFVCSKSDPSLFVCHQDGKILYLLLYVDDILLTGSDQSLLEDLLQALKNRFSMKDL 1083
Query: 1321 GELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVV 1380
G ++FLGIQI G+++HQT Y ++L++ + DC M TP+ L ++
Sbjct: 1084 GPPRYFLGIQIEDYANGLFLHQTAYATDILQQAGMSDCNPMPTPLPQ--QLDNLNSELFA 1141
Query: 1381 DQKLYRGMIGSLLYLTASRPDILFSV-CLCARFQSDSRESHLTAVKRIFRYLKGTTNLGL 1439
+ +R + G L YLT +RPDI F+V +C R S + S +KRI RY+KGT +GL
Sbjct: 1142 EPTYFRSLAGKLQYLTITRPDIQFAVNFICQRMHSPT-TSDFGLLKRILRYIKGTIGMGL 1200
Query: 1440 LYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA*YI 1499
+++ L + D+D+AG + R+ST+G C LG NLISW++KRQ T++ S+ EA Y
Sbjct: 1201 PIKRNSTLTLSAYSDSDHAGCKNTRRSTTGFCILLGSNLISWSAKRQPTVSNSSTEAEYR 1260
Query: 1500 SAASCCTQLLWMKHQLEDYQINANI-IPIFCDNTAAICLSKNPILHSRAKHIEIKHHFIR 1558
+ ++ W+ L D I + ++CDN +A+ LS NP LH+R+KH + +H+IR
Sbjct: 1261 ALTYAAREITWISFLLRDLGIPQYLPTQVYCDNLSAVYLSANPALHNRSKHFDTDYHYIR 1320
Query: 1559 YYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
V G+++ Q I Q AD+FTK L F ++ L +
Sbjct: 1321 EQVALGLIETQHISATFQLADVFTKSLPRRAFVDLRSKLGV 1361
>At1g59265 polyprotein, putative
Length = 1466
Score = 376 bits (966), Expect = e-104
Identities = 217/583 (37%), Positives = 317/583 (54%), Gaps = 13/583 (2%)
Query: 1010 QEVESSPEAEITPEAESNSEAEPSSIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELII 1069
Q SSP + + S S PS ++ +N Q P H + I
Sbjct: 880 QSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNNQA--PLNTHSMGTRAKAGI 937
Query: 1070 GSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLV 1129
K +P+ + + + L + E +T +AL D+ W AM E+N N WDLV
Sbjct: 938 -IKPNPKYSLA--------VSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLV 988
Query: 1130 PKP-FQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIR 1188
P P I+G +W+F K N G + R KARLVA+GY+Q+ +DY ETF+PV + +IR
Sbjct: 989 PPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIR 1048
Query: 1189 LLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQ 1248
++L A++ + Q+DV AFL G + ++VY+ QPPGF D P++V KL+K++YGLKQ
Sbjct: 1049 IVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQ 1108
Query: 1249 APKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFS 1308
AP+AWY L N+L+ F DT+LF K I+ + +YVDDI+ + +L +
Sbjct: 1109 APRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTL 1168
Query: 1309 KLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPT 1368
+ F + EL +FLGI+ + G+++ Q +Y +LL + + K + TPM P+
Sbjct: 1169 DNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPS 1228
Query: 1369 CTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIF 1428
LS + D YRG++GSL YL +RPDI ++V ++F E HL A+KRI
Sbjct: 1229 PKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRIL 1288
Query: 1429 RYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQAT 1488
RYL GT N G+ +K L + DAD+AGD+ + ST+G +LG + ISW+SK+Q
Sbjct: 1289 RYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKG 1348
Query: 1489 IAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIP-IFCDNTAAICLSKNPILHSRA 1547
+ S+ EA Y S A+ +++ W+ L + I P I+CDN A L NP+ HSR
Sbjct: 1349 VVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRM 1408
Query: 1548 KHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERF 1590
KHI I +HFIR VQ G L + + T Q AD TKPLS F
Sbjct: 1409 KHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAF 1451
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 375 bits (962), Expect = e-103
Identities = 191/502 (38%), Positives = 304/502 (60%), Gaps = 4/502 (0%)
Query: 1102 EALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARL 1161
EA W A+ E+ ++ + W++ P K +G KWVF K G + R KARL
Sbjct: 945 EAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKARL 1004
Query: 1162 VAQGYSQQEDIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYV 1221
VA+GY+Q+E +DYT+TF+PVA++ I+LLL + + L Q+DV AFLNG +EEE+++
Sbjct: 1005 VAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGELEEEIFM 1064
Query: 1222 KQPPGFEDLKH----PDHVYKLKKSIYGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFR 1277
K P G+ + K + V +LK+SIYGLKQA + W+ + S+ L+ F++ D TLF
Sbjct: 1065 KIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLFL 1124
Query: 1278 RTLKKDILIVQIYVDDIIFGSTNASLCKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEG 1337
+ + +IV +YVDDI+ ST+ + ++ + FK+ +G+LK+FLG+++ ++ G
Sbjct: 1125 KMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAG 1184
Query: 1338 VYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTA 1397
+ + Q KY ELL+ + CK ++ PM P + K+D + D + YR ++G L+YLT
Sbjct: 1185 ISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLTI 1244
Query: 1398 SRPDILFSVCLCARFQSDSRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADY 1457
+RPDI F+V +F S R +HLTA R+ +Y+KGT GL Y S D L GF D+D+
Sbjct: 1245 TRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSDW 1304
Query: 1458 AGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA*YISAASCCTQLLWMKHQLED 1517
A + R+ST+ F+G++LISW SK+Q T++ S+AEA Y + A +++W+ L
Sbjct: 1305 ASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFTLLVS 1364
Query: 1518 YQINANIIPIFCDNTAAICLSKNPILHSRAKHIEIKHHFIRYYVQKGILDIQFIDTEHQW 1577
Q + + ++ D+TAAI ++ NP+ H R KHI++ H +R + G L + + TE Q
Sbjct: 1365 LQASPPVPILYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVRTEDQV 1424
Query: 1578 ADIFTKPLSVERFDFIKKNLNM 1599
ADI TKPL +F+ +K +++
Sbjct: 1425 ADILTKPLFPYQFEHLKSKMSI 1446
>At1g58889 polyprotein, putative
Length = 1466
Score = 375 bits (962), Expect = e-103
Identities = 216/583 (37%), Positives = 316/583 (54%), Gaps = 13/583 (2%)
Query: 1010 QEVESSPEAEITPEAESNSEAEPSSIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELII 1069
Q SSP + + S S PS ++ +N Q P H + I
Sbjct: 880 QSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNNQA--PLNTHSMGTRAKAGI 937
Query: 1070 GSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLV 1129
K +P+ + + + L + E +T +AL D+ W AM E+N N WDLV
Sbjct: 938 -IKPNPKYSLA--------VSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLV 988
Query: 1130 PKP-FQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIR 1188
P P I+G +W+F K N G + R KAR VA+GY+Q+ +DY ETF+PV + +IR
Sbjct: 989 PPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRPGLDYAETFSPVIKSTSIR 1048
Query: 1189 LLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQ 1248
++L A++ + Q+DV AFL G + ++VY+ QPPGF D P++V KL+K++YGLKQ
Sbjct: 1049 IVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQ 1108
Query: 1249 APKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFS 1308
AP+AWY L N+L+ F DT+LF K I+ + +YVDDI+ + +L +
Sbjct: 1109 APRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTL 1168
Query: 1309 KLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPT 1368
+ F + EL +FLGI+ + G+++ Q +Y +LL + + K + TPM P+
Sbjct: 1169 DNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPS 1228
Query: 1369 CTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIF 1428
LS + D YRG++GSL YL +RPDI ++V ++F E HL A+KRI
Sbjct: 1229 PKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRIL 1288
Query: 1429 RYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQAT 1488
RYL GT N G+ +K L + DAD+AGD+ + ST+G +LG + ISW+SK+Q
Sbjct: 1289 RYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKG 1348
Query: 1489 IAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIP-IFCDNTAAICLSKNPILHSRA 1547
+ S+ EA Y S A+ +++ W+ L + I P I+CDN A L NP+ HSR
Sbjct: 1349 VVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRM 1408
Query: 1548 KHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERF 1590
KHI I +HFIR VQ G L + + T Q AD TKPLS F
Sbjct: 1409 KHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAF 1451
>At4g10990 putative retrotransposon polyprotein
Length = 1203
Score = 374 bits (959), Expect = e-103
Identities = 196/495 (39%), Positives = 296/495 (59%), Gaps = 5/495 (1%)
Query: 1096 ELKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVT 1155
E K +A+ + W A EEL+ ++N W + KN++G KWVF K N G +
Sbjct: 524 EPKAFTQAMKSEKWTRAANEELHALEQNKTWIVESLTEGKNVVGCKWVFTIKYNPDGSIE 583
Query: 1156 RKKARLVAQGYSQQEDIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKGAFLNGVI 1215
R KARLVAQG++QQE IDY ETF+PVA+ +++LLL A G L QMDV AFL+G +
Sbjct: 584 RYKARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAATGWSLTQMDVSNAFLHGEL 643
Query: 1216 EEEVYVKQPPGFED---LKHPDH-VYKLKKSIYGLKQAPKAWYDRLSNFLIKNDFERGQV 1271
+EE+Y+ P G+ + P V +L KS+YGLKQA + WY RLS+ + +F +
Sbjct: 644 DEEIYMSLPQGYTPPTGISLPSKPVCRLLKSLYGLKQASRQWYKRLSSVFLGANFIQSPA 703
Query: 1272 DTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSKLMQDEFKMSMMGELKFFLGIQI 1331
D T+F + I++V +YVDD++ S ++S ++ +L++ EFK+ +G +FFLG++I
Sbjct: 704 DNTMFVKVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIKDLGPARFFLGLEI 763
Query: 1332 NQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGS 1391
+S EG+ V Q KY + LL+ L CK + PM P L+KE + + YR ++G
Sbjct: 764 ARSSEGISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNATSYRELVGR 823
Query: 1392 LLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIG 1451
LLYL +RPDI F+V ++F S + H+ A ++ RYLKG GL+Y S + L G
Sbjct: 824 LLYLCITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQGLMYSASSELCLNG 883
Query: 1452 FCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA*YISAASCCTQLLWM 1511
F DAD+ + R+S +G C +LG +LI+W SK+Q+ ++ S+ E+ Y S A +++W+
Sbjct: 884 FSDADWGTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEYRSLAQATCEIIWL 943
Query: 1512 KHQLEDYQINANI-IPIFCDNTAAICLSKNPILHSRAKHIEIKHHFIRYYVQKGILDIQF 1570
+ L+D + +FCDN +A+ L+ NP+ H R KHIEI H +R ++ G L
Sbjct: 944 QQLLKDLHVTMTCPAKLFCDNKSALHLATNPVFHERTKHIEIDCHTVRDQIKAGKLKTLH 1003
Query: 1571 IDTEHQWADIFTKPL 1585
+ T +Q ADI TKPL
Sbjct: 1004 VPTGNQLADILTKPL 1018
>At1g70010 hypothetical protein
Length = 1315
Score = 374 bits (959), Expect = e-103
Identities = 222/591 (37%), Positives = 332/591 (55%), Gaps = 28/591 (4%)
Query: 1013 ESSPEAEITPEAE-SNSEAEPSSIVQNESASEDFQDNTQQVIQPKFKHK--SSHPEELII 1069
+SS EI P A +N+ EPS + A + +Q + H SS P E+
Sbjct: 724 DSSSSVEILPSANPTNNVPEPSVQTSHRKAKKP------AYLQDYYCHSVVSSTPHEI-- 775
Query: 1070 GSKDSPRRTRSHFRQEESLIGLLSIIELKTVE-----EALSDDGWILAMQEELNQFQRND 1124
R+ S+ R + + L+ ++ KT E EA W AM E + +
Sbjct: 776 ------RKFLSYDRINDPYLTFLACLD-KTKEPSNYTEAEKLQVWRDAMGAEFDFLEGTH 828
Query: 1125 VWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARL 1184
W++ P K IG +W+F+ K N G V R KARLVAQGY+Q+E IDY ETF+PVA+L
Sbjct: 829 TWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGIDYNETFSPVAKL 888
Query: 1185 EAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFE----DLKHPDHVYKLK 1240
+++LLL A + L Q+D+ AFLNG ++EE+Y++ P G+ D P+ V +LK
Sbjct: 889 NSVKLLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLK 948
Query: 1241 KSIYGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTN 1300
KS+YGLKQA + WY + S+ L+ F + D T F + L V +Y+DDII S N
Sbjct: 949 KSLYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNN 1008
Query: 1301 ASLCKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKV 1360
+ M+ FK+ +GELK+FLG++I +S +G+++ Q KY +LL + CK
Sbjct: 1009 DAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDKGIHISQRKYALDLLDETGQLGCKP 1068
Query: 1361 MNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESH 1420
+ PM P+ + + G V+ YR +IG L+YL +RPDI F+V A+F R++H
Sbjct: 1069 SSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKAH 1128
Query: 1421 LTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1480
L AV +I +Y+KGT GL Y + + +L + +ADY R R+STSG C FLG++LI
Sbjct: 1129 LQAVYKILQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLIC 1188
Query: 1481 WASKRQATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQIN-ANIIPIFCDNTAAICLSK 1539
W S++Q ++ S+AEA Y S + +L+W+ + L++ Q+ + +FCDN AAI ++
Sbjct: 1189 WKSRKQDVVSKSSAEAEYRSLSVATDELVWLTNFLKELQVPLSKPTLLFCDNEAAIHIAN 1248
Query: 1540 NPILHSRAKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERF 1590
N + H R KHIE H +R + KG+ ++ I+TE Q AD FTKPL F
Sbjct: 1249 NHVFHERTKHIESDCHSVRERLLKGLFELYHINTELQIADPFTKPLYPSHF 1299
>At4g27210 putative protein
Length = 1318
Score = 369 bits (948), Expect = e-102
Identities = 202/582 (34%), Positives = 318/582 (53%), Gaps = 8/582 (1%)
Query: 1023 EAESNSEAEPSSIVQNESASEDFQDNTQQVIQPKFK----HKSSHPEELIIGSKDSPRRT 1078
++E ++ + +SI + +S+ D+ + + Q H S++ ++ +K +
Sbjct: 639 DSERTTDFDSASIGDSSHSSQAGSDSEETIQQASVNVHQTHASTNVHPMVTRAKVGISKP 698
Query: 1079 RSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNII 1138
+ L +S E KTV AL GW AM EE+ W LVP +++
Sbjct: 699 NPRY---VFLSHKVSYPEPKTVTAALKHPGWTGAMTEEIGNCSETQTWSLVPYKSDMHVL 755
Query: 1139 GTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRLLLSYAINHG 1198
G+KWVFR KL+ G + + KAR+VA+G+ Q+E IDY ET++PV R +RL+L A
Sbjct: 756 GSKWVFRTKLHADGTLNKLKARIVAKGFLQEEGIDYLETYSPVVRTPTVRLVLHLATALN 815
Query: 1199 IILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQAPKAWYDRLS 1258
+ QMDVK AFL+G ++E VY+ QP GF D PDHV L KSIYGLKQ+P+AW+D+ S
Sbjct: 816 WDIKQMDVKNAFLHGDLKETVYMTQPAGFVDPSKPDHVCLLHKSIYGLKQSPRAWFDKFS 875
Query: 1259 NFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSKLMQDEFKMS 1318
FL++ F + D +LF +++++ +YVDD++ ++ + EF+M+
Sbjct: 876 TFLLEFGFFCSKSDPSLFIYAHNNNLILLLLYVDDMVITGNSSQTLTSLLAALNKEFRMT 935
Query: 1319 MMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGT 1378
MG+L +FLGIQ+ + + G+++ Q KY ++LL +E C + TP+
Sbjct: 936 DMGQLHYFLGIQVQRQQNGLFMSQQKYAEDLLIAASMEHCTPLPTPLPVQLDRVPHQEEL 995
Query: 1379 VVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFRYLKGTTNLG 1438
D +R + G L YLT +RPDI F+V + S +KRI RY+KGT +G
Sbjct: 996 FSDPTYFRSIAGKLQYLTLTRPDIQFAVNFVCQKMHQPTISDFHLLKRILRYIKGTITMG 1055
Query: 1439 LLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA*Y 1498
+ Y + L + D+D+ + R+S G C F+G NL+SW+SK+ T++ S+ EA Y
Sbjct: 1056 ISYSRDSPTLLQAYSDSDWGNCKQTRRSVGGLCTFMGTNLVSWSSKKHPTVSRSSTEAEY 1115
Query: 1499 ISAASCCTQLLWMKHQLEDYQINANIIP-IFCDNTAAICLSKNPILHSRAKHIEIKHHFI 1557
S + +++LW+ L + +I P +FCDN +A+ L+ NP H+R KH +I HF+
Sbjct: 1116 KSLSDAASEILWLSTLLRELRIPLPDTPELFCDNLSAVYLTANPAFHARTKHFDIDFHFV 1175
Query: 1558 RYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
R V L ++ I Q ADIFTK L E F ++ L +
Sbjct: 1176 RERVALKALVVKHIPGSEQIADIFTKSLPYEAFIHLRGKLGV 1217
>At4g02960 putative polyprotein of LTR transposon
Length = 1456
Score = 366 bits (939), Expect = e-101
Identities = 199/531 (37%), Positives = 299/531 (55%), Gaps = 5/531 (0%)
Query: 1071 SKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLVP 1130
+KD R+ + SL + E +T +A+ DD W AM E+N N WDLVP
Sbjct: 916 AKDGIRKPNQKYSYATSLA---ANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVP 972
Query: 1131 KPFQK-NIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRL 1189
P I+G +W+F K N G + R KARLVA+GY+Q+ +DY ETF+PV + +IR+
Sbjct: 973 PPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRI 1032
Query: 1190 LLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQA 1249
+L A++ + Q+DV AFL G + +EVY+ QPPGF D PD+V +L+K+IYGLKQA
Sbjct: 1033 VLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQA 1092
Query: 1250 PKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSK 1309
P+AWY L +L+ F DT+LF + I+ + +YVDDI+ + L K
Sbjct: 1093 PRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLD 1152
Query: 1310 LMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTC 1369
+ F + +L +FLGI+ + +G+++ Q +YT +LL + + K + TPM +
Sbjct: 1153 ALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSP 1212
Query: 1370 TLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFR 1429
L+ + D YRG++GSL YL +RPD+ ++V +++ + H A+KR+ R
Sbjct: 1213 KLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLR 1272
Query: 1430 YLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATI 1489
YL GT + G+ +K L + DAD+AGD + ST+G +LG + ISW+SK+Q +
Sbjct: 1273 YLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGV 1332
Query: 1490 AMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIP-IFCDNTAAICLSKNPILHSRAK 1548
S+ EA Y S A+ ++L W+ L + I + P I+CDN A L NP+ HSR K
Sbjct: 1333 VRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMK 1392
Query: 1549 HIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1599
HI + +HFIR VQ G L + + T Q AD TKPLS F + + +
Sbjct: 1393 HIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443
Score = 30.4 bits (67), Expect = 8.6
Identities = 34/181 (18%), Positives = 71/181 (38%), Gaps = 25/181 (13%)
Query: 24 RFQTLVFGLQLLKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKV 83
RF T L LL K + V ++L +LP ++P + I AKD S ++
Sbjct: 129 RFITRFDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQI-AAKDTPP-------SLTEI 180
Query: 84 HEMSLNEHE---TSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDEDQSVKMAML 140
HE +N ++ + + + T +++ + + ++ + +++ ++S
Sbjct: 181 HERLINRESKLLALNSAEVVPITANVVTHRNTNTNRNQNNRGDNRNYNNNNNRSNSWQPS 240
Query: 141 SNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCPDLQKEKYKVKSKKS 200
S+ R+ K +L + C C GH CP L + + ++S
Sbjct: 241 SSGSRSDNRQPKPYLGR--------------CQICSVQGHSAKRCPQLHQFQSTTNQQQS 286
Query: 201 S 201
+
Sbjct: 287 T 287
>At4g16870 retrotransposon like protein
Length = 1474
Score = 362 bits (930), Expect = e-100
Identities = 211/582 (36%), Positives = 305/582 (52%), Gaps = 18/582 (3%)
Query: 1011 EVESSPEAEITPEAESNSEAEPS-SIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELII 1069
E+E +P P + + P+ + V + S Q ++ + K+ P
Sbjct: 894 EIEPTPAPHPKPVKPTTTTTTPNRTTVSDASHQPTAPQQNQHNMKTRAKNNIKKPNTKFS 953
Query: 1070 GSKDSPRRTRSHFRQEESLIGLLSIIELKTVEEALSDDGWILAMQEELNQFQRNDVWDLV 1129
+ P R+ S E V +AL D W AM +E + QRN WDLV
Sbjct: 954 LTATLPNRSPS---------------EPTNVTQALKDKKWRFAMSDEFDAQQRNHTWDLV 998
Query: 1130 PKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAPVARLEAIRL 1189
P Q ++G KWVF+ K G + + KARLVA+G++QQ +DY ETF+PV + IRL
Sbjct: 999 PHESQL-LVGCKWVFKLKYLPNGAIDKYKARLVAKGFNQQYGVDYAETFSPVIKSTTIRL 1057
Query: 1190 LLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSIYGLKQA 1249
+L A+ + Q+DV AFL G + EEVY+ QPPGF D P HV +L+K+IYGLKQA
Sbjct: 1058 VLDVAVKKDWEIKQLDVNNAFLQGTLTEEVYMAQPPGFIDKDRPTHVCRLRKAIYGLKQA 1117
Query: 1250 PKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKDFSK 1309
P+AWY L L F D +LF + V +YVDDII ++ S
Sbjct: 1118 PRAWYMELKQHLFNIGFVNSLSDASLFIYCHGTTFVYVLVYVDDIIVTGSDKSSIDAVLT 1177
Query: 1310 LMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTC 1369
+ + F + +L +FLGI+ ++K+G+++ Q KY K+LL K + D K + TP+ +
Sbjct: 1178 SLAERFSIKDPTDLHYFLGIEATRTKQGLHLMQRKYIKDLLAKHNMADAKPVLTPLPTSP 1237
Query: 1370 TLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESHLTAVKRIFR 1429
L+ + D YR ++GSL YL +RPDI ++V ++ E H A KR+ R
Sbjct: 1238 KLTLHGGTKLNDASEYRSVVGSLQYLAFTRPDIAYAVNRLSQLMPQPTEDHWQAAKRVLR 1297
Query: 1430 YLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATI 1489
YL GT+ G+ + L F DAD+AGD + ST+ +LG+N ISW+SK+Q +
Sbjct: 1298 YLAGTSTHGIFLDTTSPLNLHAFSDADWAGDSDDYVSTNAYVIYLGKNPISWSSKKQRGV 1357
Query: 1490 AMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIP-IFCDNTAAICLSKNPILHSRAK 1548
A S+ E+ Y + A+ +++ W+ L I I P IFCDN A L NP+ HSR K
Sbjct: 1358 ARSSTESEYRAVANAASEVKWLCSLLSKLHIRLPIRPSIFCDNIGATYLCANPVFHSRMK 1417
Query: 1549 HIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERF 1590
HI I +HF+R +Q G L + + T Q AD TKPLS F
Sbjct: 1418 HIAIDYHFVRNMIQSGALRVSHVSTRDQLADALTKPLSRAHF 1459
Score = 40.0 bits (92), Expect = 0.011
Identities = 54/223 (24%), Positives = 87/223 (38%), Gaps = 21/223 (9%)
Query: 13 KDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTL 72
K ++I+E TL+ L +L K + V +IL LP ++ V I E KD NT
Sbjct: 145 KGTKTIDEYVLSHTTLLDQLAILGKPMEHEEQVERILEGLPEDYKTVVDQI-EGKD-NTP 202
Query: 73 SVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDED 132
S+ + +HE +N HE L S S SS A+ +++ + + + +
Sbjct: 203 SITE------IHERLIN-HEAK-------LLSTAALSSSSLPMSANVAQQRHHNNNRNNN 248
Query: 133 QSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCPDLQKEK 192
Q+ + Y Q +K G + K C C GH CP LQ +
Sbjct: 249 QNKNRTQGNT---YTNNWQPSANNKSG--QRPFKPYLGKCQICNVQGHSARRCPQLQAMQ 303
Query: 193 YKVKSKKSSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADD 235
S S+F+ + R + T + +SG+ D
Sbjct: 304 PSSSSSASTFTPWQPRANLAMGAPYTANNWLLDSGATHHITSD 346
>At1g44510 polyprotein, putative
Length = 1459
Score = 362 bits (929), Expect = e-99
Identities = 213/592 (35%), Positives = 317/592 (52%), Gaps = 17/592 (2%)
Query: 1011 EVESSPEAE-ITPEAESNSEAEPSSIVQN---ESASEDFQDNTQQVIQPKFKHKSSHPEE 1066
E +S+P + I P N E PSS ++ + ++ Q I +S P+
Sbjct: 858 EAQSNPNSPFIGPLPNPNPETNPSSSIEQRPVDKSTTTALPPNQTTIAATSNSRSQPPKN 917
Query: 1067 LIIGSKDSPRRTRSHFRQEESLIGLLSII------ELKTVEEALSDDGWILAMQEELNQF 1120
+ R++++ + ++ L + E TV +AL D W AM +E +
Sbjct: 918 ----NHQMKTRSKNNITKPKTKTSLTVALTQPHLSEPNTVTQALKDKKWRFAMSDEFDAQ 973
Query: 1121 QRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAP 1180
QRN WDLVP ++++G +WVF+ K G + + KARLVA+G++QQ +DY ETF+P
Sbjct: 974 QRNHTWDLVPPNPTQHLVGCRWVFKLKYLPNGLIDKYKARLVAKGFNQQYGVDYAETFSP 1033
Query: 1181 VARLEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLK 1240
V + IR++L A+ L Q+DV AFL G + EEVY+ QPPGF D P HV +L+
Sbjct: 1034 VIKATTIRVVLDVAVKKNWPLKQLDVNNAFLQGTLTEEVYMAQPPGFVDKDRPSHVCRLR 1093
Query: 1241 KSIYGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIF-GST 1299
K+IYGLKQAP+AWY L L+ F DT+LF + +L + +YVDDII GS
Sbjct: 1094 KAIYGLKQAPRAWYMELKQHLLNIGFVNSLADTSLFIYSHGTTLLYLLVYVDDIIVTGSD 1153
Query: 1300 NASLCKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCK 1359
+ S+ S L + F + +L +FLGI+ ++ G+++ Q KY +LL K + D K
Sbjct: 1154 HKSVSAVLSSL-AERFSIKDPTDLHYFLGIEATRTNTGLHLMQRKYMTDLLAKHNMLDAK 1212
Query: 1360 VMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRES 1419
+ TP+ + L+ + D YR ++GSL YL +RPDI F+V ++F
Sbjct: 1213 PVATPLPTSPKLTLHGGTKLNDASEYRSVVGSLQYLAFTRPDIAFAVNRLSQFMHQPTSD 1272
Query: 1420 HLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLI 1479
H A KR+ RYL GTT G+ S L F DAD+AGD + ST+ +LG N I
Sbjct: 1273 HWQAAKRVLRYLAGTTTHGIFLNSSSPIHLHAFSDADWAGDSADYVSTNAYVIYLGRNPI 1332
Query: 1480 SWASKRQATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIP-IFCDNTAAICLS 1538
SW+SK+Q ++ S+ E+ Y + A+ +++ W+ L + I P IFCDN A +
Sbjct: 1333 SWSSKKQRGVSRSSTESEYRAVANAASEIRWLCSLLTELHIRLPHGPTIFCDNIGATYIC 1392
Query: 1539 KNPILHSRAKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERF 1590
NP+ HSR KHI + +HF+R +Q L + + T Q AD TK LS F
Sbjct: 1393 ANPVFHSRMKHIALDYHFVRGMIQSRALRVSHVSTNDQLADALTKSLSRPHF 1444
Score = 34.7 bits (78), Expect = 0.46
Identities = 42/189 (22%), Positives = 68/189 (35%), Gaps = 17/189 (8%)
Query: 13 KDDESIEEMYSRFQTLVFGLQLLKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTL 72
K ++I+E T + L +L K + V IL+ LP ++ V I E KD NT
Sbjct: 144 KGTKTIDEYVQSHTTRLDQLAILGKPMEHEEQVEHILKGLPEEYKTVVDQI-EGKD-NTP 201
Query: 73 SVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDED 132
++ ++ L HE L E S S + + ++ + G++ +
Sbjct: 202 TITEIHERLINHESKLLSDEV-PPSSSFPMSANAVQQRNFNNNCNQNQHKNRYQGNTHNN 260
Query: 133 QSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCPDLQKEK 192
+ + S + R K +L K C C GH CP LQ +
Sbjct: 261 NTNTNSQPSTYNKSGQRTFKPYLGK--------------CQICSVQGHSARRCPQLQAMQ 306
Query: 193 YKVKSKKSS 201
S S
Sbjct: 307 LPASSSAHS 315
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 356 bits (914), Expect = 5e-98
Identities = 185/481 (38%), Positives = 287/481 (59%), Gaps = 4/481 (0%)
Query: 1121 QRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRKKARLVAQGYSQQEDIDYTETFAP 1180
+ N W + P K IG++WV++ K N G V R KARLVA G Q+E DY ETFAP
Sbjct: 848 EENHTWTIEDLPPGKRAIGSQWVYKVKHNSDGSVERYKARLVALGNKQKEGEDYGETFAP 907
Query: 1181 VARLEAIRLLLSYAINHGIILYQMDVKGAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLK 1240
VA++ +RL L A+ ++QMDV AFL+G + EEVY+K PPGFE HP+ V +L+
Sbjct: 908 VAKMATVRLFLDVAVKRNWEIHQMDVHNAFLHGDLREEVYMKLPPGFE-ASHPNKVCRLR 966
Query: 1241 KSIYGLKQAPKAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTN 1300
K++YGLKQAP+ W+++L+ L + F++ D +LF + + IYVDD+I +
Sbjct: 967 KALYGLKQAPRCWFEKLTTALKRYGFQQSLADYSLFTLVKGSVRIKILIYVDDLIITGNS 1026
Query: 1301 ASLCKDFSKLMQDEFKMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKV 1360
+ F + + F M +G LK+FLGI++ +S G+Y+ Q KY +++ + L K
Sbjct: 1027 QRATQQFKEYLASCFHMKDLGPLKYFLGIEVARSTTGIYICQRKYALDIISETGLLGVKP 1086
Query: 1361 MNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDSRESH 1420
N P+ L + + D + YR ++G L+YL +R D+ FSV + ARF + RE H
Sbjct: 1087 ANFPLEQNHKLGLSTSPLLTDPQRYRRLVGRLIYLAVTRLDLAFSVHILARFMQEPREDH 1146
Query: 1421 LTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1480
A R+ RYLK G+ R+S D+++ G+CD+D+AGD + R+S +G G++ IS
Sbjct: 1147 WAAALRVVRYLKADPGQGVFLRRSGDFQITGWCDSDWAGDPMSRRSVTGYFVQFGDSPIS 1206
Query: 1481 WASKRQATIAMSTAEA*YISAASCCTQLLWMKHQLEDYQINANIIPIF--CDNTAAICLS 1538
W +K+Q T++ S+AEA Y + + ++LLW+K L + +++ P+ CD+ +AI ++
Sbjct: 1207 WKTKKQDTVSKSSAEAEYRAMSFLASELLWLKQLLFSLGV-SHVQPMIMCCDSKSAIYIA 1265
Query: 1539 KNPILHSRAKHIEIKHHFIRYYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLN 1598
NP+ H R KHIEI +HF+R KG++ + + T Q ADIFTKPL + F + L
Sbjct: 1266 TNPVFHERTKHIEIDYHFVRDEFVKGVITPRHVGTTSQLADIFTKPLGRDCFSAFRIKLG 1325
Query: 1599 M 1599
+
Sbjct: 1326 I 1326
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.333 0.143 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,198,471
Number of Sequences: 26719
Number of extensions: 1401136
Number of successful extensions: 10577
Number of sequences better than 10.0: 350
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 220
Number of HSP's that attempted gapping in prelim test: 9325
Number of HSP's gapped (non-prelim): 1084
length of query: 1604
length of database: 11,318,596
effective HSP length: 113
effective length of query: 1491
effective length of database: 8,299,349
effective search space: 12374329359
effective search space used: 12374329359
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 67 (30.4 bits)
Medicago: description of AC146807.3