BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146807.10 - phase: 0
(234 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g24500 putative C2H2-type zinc finger protein 30 0.84
At4g08350 putative protein 30 1.1
At5g61490 putative protein 28 3.2
At1g65280 28 3.2
At4g16050 hypothetical protein 28 5.5
At1g32810 hypothetical protein 28 5.5
At3g46540 unknown protein 27 7.1
At2g44110 similar to Mlo proteins from H. vulgare 27 7.1
At4g33330 unknown protein 27 9.3
At4g19530 TMV resistance protein N - like 27 9.3
At3g63400 cyclophylin (ROC22) 27 9.3
At2g25010 unknown protein 27 9.3
At1g21270 putative protein 27 9.3
>At2g24500 putative C2H2-type zinc finger protein
Length = 395
Score = 30.4 bits (67), Expect = 0.84
Identities = 23/73 (31%), Positives = 33/73 (44%), Gaps = 9/73 (12%)
Query: 155 VCRKSVKHLGVRSGIAHEAYTQWNLMLKKELVKVRRELEEKDELLMRDSKRARGRCNFYA 214
+C K G RS AHE + L K ++K E+D+ +++ R N A
Sbjct: 72 ICNK-----GYRSSKAHEQH----LKSKSHVLKASTSTGEEDKAIIKQLPPRRVEKNNTA 122
Query: 215 RYCGSDSESESED 227
+ GS E ESED
Sbjct: 123 QLKGSIEEEESED 135
>At4g08350 putative protein
Length = 1054
Score = 30.0 bits (66), Expect = 1.1
Identities = 18/47 (38%), Positives = 25/47 (52%), Gaps = 3/47 (6%)
Query: 184 ELVKVRRELEEKDELLMRD---SKRARGRCNFYARYCGSDSESESED 227
+L + E EE++E R S+R RGR NF Y DS+ E +D
Sbjct: 19 DLEEEEEEDEEEEEERGRGGGGSRRKRGRSNFIDDYAEEDSQEEDDD 65
>At5g61490 putative protein
Length = 260
Score = 28.5 bits (62), Expect = 3.2
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 36 LCCVPLLYRWFISHLPSSFHDNSENWSYSQRIMALTPNEVVW--ITPTAQVKEIIT 89
LC LL + + L +FH + S + +M+LT ++ VW + V+E+I+
Sbjct: 118 LCNTSLLQPFMLDRLYDAFHVFQTDPSVQRMVMSLTSDKAVWDAVMNNEVVRELIS 173
>At1g65280
Length = 605
Score = 28.5 bits (62), Expect = 3.2
Identities = 17/54 (31%), Positives = 27/54 (49%), Gaps = 4/54 (7%)
Query: 182 KKELVKVRRELEEKDELLMRDSKRARGRCNFYAR----YCGSDSESESEDHPTT 231
K+E + R+++E K+ K+ + + Y Y GSDS S+ ED P T
Sbjct: 60 KREKERKRKKIERKERKRRDMKKKKKTKKREYESDTESYSGSDSFSDQEDDPET 113
>At4g16050 hypothetical protein
Length = 900
Score = 27.7 bits (60), Expect = 5.5
Identities = 28/131 (21%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 96 NVPLLGTRGGINYNPELAMRQFGFPMKAKPINLATSPEFFYYSNAPTGQREAFIGAWSKV 155
+VP+LGT N+ E A + P+ + P ++ T R+ + + S++
Sbjct: 627 DVPVLGTNHRRNFTEEEAWDDYNKPLVGLKLYF---PSRVATASVTTRYRDWWAKSVSEM 683
Query: 156 CRKSVKHLGVRSGIAHEAYTQWNLMLKKELVKVRRELEEKDELLMRDSKRARGRCNFYAR 215
++S++ V S + H + ++ LK +V + + ++ D+ + K+A+ N +
Sbjct: 684 RKESMETFNVSSTVDHYDDSDDDIPLK--IVPLSQVYQKLDD----EMKKAKHSTNKRRK 737
Query: 216 YCGSDSESESE 226
D ES +E
Sbjct: 738 RAREDDESAAE 748
>At1g32810 hypothetical protein
Length = 654
Score = 27.7 bits (60), Expect = 5.5
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 179 LMLKKELVKVRRELEEKDELLMRDSKRARGRCNFYARYCGSDSESESEDHPTT 231
L ++++ +KV R+ ++E+ D + A + + +C + E E E H T
Sbjct: 585 LSIQRKGIKVLRKKRNEEEVSEEDEEDAFSDTSEESIFCDEEEEEEEEGHTAT 637
>At3g46540 unknown protein
Length = 307
Score = 27.3 bits (59), Expect = 7.1
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 177 WNLMLKKELVKVRRELEEKDELLMRDSKRAR 207
W L ++K+ KV + LE K ELL + KRAR
Sbjct: 146 WGLAVRKKAEKVLKLLE-KGELLKEERKRAR 175
>At2g44110 similar to Mlo proteins from H. vulgare
Length = 496
Score = 27.3 bits (59), Expect = 7.1
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 144 QREAFIGAWSKVCRKSVKHLGVRSGIAHEAYT-----QWNLMLKKELVKVRRELEEKDEL 198
Q + + W+K+ ++ VK + G +H+A + Q N +L K + + +EK E+
Sbjct: 433 QTQEHLVGWAKMAKRGVKKGATQVGTSHDATSPRPSIQLNSLLGKGSSQQNQNPKEKSEI 492
Query: 199 LMRD 202
D
Sbjct: 493 AHHD 496
>At4g33330 unknown protein
Length = 333
Score = 26.9 bits (58), Expect = 9.3
Identities = 11/41 (26%), Positives = 20/41 (47%)
Query: 49 HLPSSFHDNSENWSYSQRIMALTPNEVVWITPTAQVKEIIT 89
H P ++ W Y+ IM + P+ + T +Q EI++
Sbjct: 146 HFPQMSATGNDVWIYNSGIMVIEPSNCTFTTIMSQRSEIVS 186
>At4g19530 TMV resistance protein N - like
Length = 1167
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/42 (35%), Positives = 19/42 (44%)
Query: 97 VPLLGTRGGINYNPELAMRQFGFPMKAKPINLATSPEFFYYS 138
VPLL R G+N+ A R F K + S EF Y+
Sbjct: 363 VPLLSHRDGLNHFCHYAFRHFAAHQNNKEAFMKESKEFVRYA 404
>At3g63400 cyclophylin (ROC22)
Length = 567
Score = 26.9 bits (58), Expect = 9.3
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 187 KVRRELEEKDELLMRDSKRARGRCNFYARYCGSDSESESEDHPTTSY 233
K R+ E ++ + R KR + Y+ SDS+SESE + ++SY
Sbjct: 209 KETRKKESNEKRIKR--KRRYSSSDSYSSSSDSDSDSESEAYSSSSY 253
>At2g25010 unknown protein
Length = 509
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/43 (34%), Positives = 21/43 (47%)
Query: 17 LADTYHAIHDRTLKGRGYILCCVPLLYRWFISHLPSSFHDNSE 59
LA Y A+ + +LK + I C+ LL W HL + SE
Sbjct: 221 LACLYRALGNASLKSQSNICGCLTLLQCWSYFHLDIGRPEKSE 263
>At1g21270 putative protein
Length = 732
Score = 26.9 bits (58), Expect = 9.3
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 37 CC----VPLLYRWFIS------HLPSSFHDNSENWSYSQRIMALTPNEVVWITPTAQV 84
CC VPLL FI+ HL S +D+S W + RI + ++ +A +
Sbjct: 466 CCLETEVPLLVYEFINSGTLFDHLHGSLYDSSLTWEHRLRIATEVAGSLAYLHSSASI 523
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.321 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,798,127
Number of Sequences: 26719
Number of extensions: 256242
Number of successful extensions: 641
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 634
Number of HSP's gapped (non-prelim): 13
length of query: 234
length of database: 11,318,596
effective HSP length: 96
effective length of query: 138
effective length of database: 8,753,572
effective search space: 1207992936
effective search space used: 1207992936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146807.10