BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146805.1 - phase: 0 /pseudo
(1445 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10580 putative reverse-transcriptase -like protein 380 e-105
At2g04670 putative retroelement pol polyprotein 380 e-105
At2g10780 pseudogene 367 e-101
At2g07660 putative retroelement pol polyprotein 365 e-101
At2g14650 putative retroelement pol polyprotein 339 8e-93
At3g11970 hypothetical protein 290 3e-78
At1g36590 hypothetical protein 290 3e-78
At2g05610 putative retroelement pol polyprotein 271 2e-72
At1g35370 hypothetical protein 265 1e-70
At1g36120 putative reverse transcriptase gb|AAD22339.1 243 6e-64
At2g06890 putative retroelement integrase 227 4e-59
At4g04230 putative transposon protein 197 5e-50
At4g08100 putative polyprotein 189 1e-47
At4g03650 putative reverse transcriptase 170 6e-42
At2g15410 putative retroelement pol polyprotein 148 3e-35
At1g20390 hypothetical protein 147 3e-35
At2g06170 putative Ty3-gypsy-like retroelement pol polyprotein 144 5e-34
At2g14400 putative retroelement pol polyprotein 142 1e-33
At2g14380 putative retroelement pol polyprotein 134 3e-31
At2g06470 putative retroelement pol polyprotein 131 3e-30
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 380 bits (975), Expect = e-105
Identities = 184/356 (51%), Positives = 249/356 (69%), Gaps = 11/356 (3%)
Query: 388 LSMFGRDFEMDLVCLPLSGMDVILGMNWLEYKHVHINCFSKSVYFSSAEEEC-------- 439
+ + G DL+ P+ DVILGM+WL+Y VH++ V+F E
Sbjct: 358 IQIAGESMPADLIISPVELYDVILGMDWLDYYRVHLDWHRGRVFFERPEGRLVYQGVRPI 417
Query: 440 -GAEFLSTKQLKQMERDGILMFSLMASLSIE-NQAVIDKLQVVCDFPEVYPDEIPDVPPE 497
G+ +S Q ++M G + + S+ Q + ++VV +F +V+ + +PP
Sbjct: 418 SGSLVISAVQAEKMIEKGCEAYLVTISMPESVGQVAVSDIRVVQEFQDVF-QSLQGLPPS 476
Query: 498 REVEFSINLVPGTKPVSMAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLVKK 557
+ F+I L PGT P+S APYRM+ +E++ELKKQL+DLL K F+RPS SPWGAPVL VKK
Sbjct: 477 QSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLKDLLGKGFIRPSTSPWGAPVLFVKK 536
Query: 558 KDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDM 617
KDGS RLCIDYR+LN+VT+KNRYPLPRID+L+DQL GA FSKIDL SGYHQI + + D+
Sbjct: 537 KDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADV 596
Query: 618 QKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEE 677
+KTA RTRYGH+E+ VMPFG+TNAP VFM MN +F FLD FV++FIDDIL+YSK+ EE
Sbjct: 597 RKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEE 656
Query: 678 HAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVDPSKVEAVSQW 733
HL+ V++ L+E+KL+AKLSKC FW +E+ FLGH++S +G++VDP K+EA+ W
Sbjct: 657 QEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDW 712
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 380 bits (975), Expect = e-105
Identities = 184/356 (51%), Positives = 246/356 (68%), Gaps = 11/356 (3%)
Query: 388 LSMFGRDFEMDLVCLPLSGMDVILGMNWLEYKHVHINCFSKSVYFSSAEEEC-------- 439
+ + G DL+ P+ DVILGM+WL++ VH++C V F E
Sbjct: 384 IQIAGESMPADLIISPVELYDVILGMDWLDHYRVHLDCHRGRVSFERPEGRLVYQGVRPT 443
Query: 440 -GAEFLSTKQLKQMERDGILMFSLMASLSIE-NQAVIDKLQVVCDFPEVYPDEIPDVPPE 497
G+ +S Q K+M G + + S+ Q + ++V+ +F +V+ + +PP
Sbjct: 444 SGSLVISAVQAKKMIEKGCEAYLVTISMPESLGQVAVSDIRVIQEFEDVF-QSLQGLPPS 502
Query: 498 REVEFSINLVPGTKPVSMAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLVKK 557
R F+I L PGT P+S APYRM+ +E++ELKKQLEDLL K F+RPS SPWGAPVL VKK
Sbjct: 503 RSDPFTIELEPGTAPLSKAPYRMAPAEMTELKKQLEDLLGKGFIRPSTSPWGAPVLFVKK 562
Query: 558 KDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDM 617
KDGS RLCIDYR LN VT+KN+YPLPRID+L+DQL GA FSKIDL SGYHQI + + D+
Sbjct: 563 KDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADV 622
Query: 618 QKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEE 677
+KTA RTRYGH+E+ VMPF +TNAP FM MN +F FLD FV++FIDDIL+YSK+ EE
Sbjct: 623 RKTAFRTRYGHFEFVVMPFALTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEE 682
Query: 678 HAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVDPSKVEAVSQW 733
H HL+ V++ L+E+KL+AKLSKC FW +E+ FLGH++S +G++VDP K+EA+ W
Sbjct: 683 HEVHLRRVMEKLREQKLFAKLSKCSFWQREIGFLGHIVSAEGVSVDPEKIEAIRDW 738
>At2g10780 pseudogene
Length = 1611
Score = 367 bits (942), Expect = e-101
Identities = 182/352 (51%), Positives = 245/352 (68%), Gaps = 11/352 (3%)
Query: 392 GRDFEMDLVCLPLSGMDVILGMNWLEYKHVHINCFSKSVYFSSAE---------EECGAE 442
G + DL+ +PL DVILGM+WL HI+C + F E G+
Sbjct: 530 GVNMPADLIIVPLKKHDVILGMDWLGKYKAHIDCHRGRIQFERDEGMLKFQGIRTTSGSL 589
Query: 443 FLSTKQLKQMERDGILMF-SLMASLSIENQAVIDKLQVVCDFPEVYPDEIPDVPPEREVE 501
+S Q ++M G + + + + + A + + +V +F +V+ + VPP+R
Sbjct: 590 VISAIQAERMLGKGCEAYLATITTKEVGASAELKDIPIVNEFSDVFA-AVSGVPPDRSDP 648
Query: 502 FSINLVPGTKPVSMAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDGS 561
F+I L PGT P+S APYRM+ +E+++LKKQLE+LL+K F+RPS SPWGAPVL VKKKDGS
Sbjct: 649 FTIELEPGTTPISKAPYRMAPAEMAKLKKQLEELLDKGFIRPSSSPWGAPVLFVKKKDGS 708
Query: 562 MRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTA 621
RLCIDYR LNKVT+KN+YPLPRID+LMDQL GA+ FSKIDL SGYHQI ++ D++KTA
Sbjct: 709 FRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTA 768
Query: 622 LRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEH 681
RTRY H+E+ VMPFG+TNAP FM+ MN +F FLD FV++FI+DIL+YSK+ E H EH
Sbjct: 769 FRTRYDHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEH 828
Query: 682 LKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVDPSKVEAVSQW 733
L+ VL+ L+E +L+AKLSKC FW + V FLGHVIS G++VDP K+ ++ +W
Sbjct: 829 LRAVLERLREHELFAKLSKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEW 880
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 365 bits (938), Expect = e-101
Identities = 183/352 (51%), Positives = 245/352 (68%), Gaps = 11/352 (3%)
Query: 392 GRDFEMDLVCLPLSGMDVILGMNWLEYKHVHINCFSKSVYFSSAE---------EECGAE 442
G + DL+ +PL DVILGM+WL HI+C + + F E G+
Sbjct: 25 GVNMPADLIIVPLKKHDVILGMDWLGKYKGHIDCHRERIQFERDEGMLKFQGIRTTSGSL 84
Query: 443 FLSTKQLKQMERDGILMF-SLMASLSIENQAVIDKLQVVCDFPEVYPDEIPDVPPEREVE 501
+S Q ++M G + + + + + A + + +V +F +V+ + VPP+R
Sbjct: 85 VISAIQAERMLGKGCEAYLATITTKEVGASAELKDILIVNEFSDVFA-AVSGVPPDRSDP 143
Query: 502 FSINLVPGTKPVSMAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDGS 561
F+I L PGT P+S APYRM+ +E++ELKKQLE+LL K F+RPS SPWGAPVL VKKKDGS
Sbjct: 144 FTIELEPGTTPISKAPYRMAPAEMAELKKQLEELLAKGFIRPSSSPWGAPVLFVKKKDGS 203
Query: 562 MRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTA 621
RLCIDYR LNKVT+KN+YPLPRID+LMDQL GA+ FSKIDL SGYHQI ++ D++KTA
Sbjct: 204 FRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTA 263
Query: 622 LRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEH 681
RTRYGH+E+ VMPFG+TNAP FM+ MN +F FLD FV++FIDDIL++SK+ E H EH
Sbjct: 264 FRTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVHSKSWEAHQEH 323
Query: 682 LKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVDPSKVEAVSQW 733
L+ VL+ L+E +L+AKLSK FW + V FLGHVIS G++VDP K+ ++ +W
Sbjct: 324 LRAVLERLREHELFAKLSKFSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEW 375
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 339 bits (869), Expect = 8e-93
Identities = 182/395 (46%), Positives = 249/395 (62%), Gaps = 28/395 (7%)
Query: 341 TSATHCFIAFDCVSALGLDLSDMS*EMVVETPAKGSVTTSLVCLR-CPLSMFGRDFEMDL 399
+ A+HCFI + S G D ++ A G L + + + G DL
Sbjct: 319 SGASHCFITPESASR-GNIRGDPGEQLGAVKVAGGQFVAVLGRTKGVDIQIAGESMPADL 377
Query: 400 VCLPLSGMDVILGMNWLEYKHVHINCFSKSVYFSSAEEECGAEFLSTKQLKQMERDGILM 459
+ P+ DVILGM+WL++ VH++C V F E + + G L+
Sbjct: 378 IISPVELYDVILGMDWLDHYRVHLDCHRGRVSFERPEGSLVYQGVRPTS-------GSLV 430
Query: 460 FSLMASLSIENQAVIDK-LQVVCDFPEVYPDEIPDVPPEREVEFSINLVPGTKPVSMAPY 518
S +++ + +I+K + +F +V+ + +PP R F+I L PGT P+S APY
Sbjct: 431 IS-----AVQAEKMIEKGCEAYLEFEDVF-QSLQGLPPSRSDPFTIELEPGTAPLSKAPY 484
Query: 519 RMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKN 578
RM+ +E++ELKKQLEDLL GAPVL VKKKDGS RLCIDYR LN VT+KN
Sbjct: 485 RMAPAEMAELKKQLEDLL------------GAPVLFVKKKDGSFRLCIDYRGLNWVTVKN 532
Query: 579 RYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTALRTRYGHYEYKVMPFGV 638
+YPLPRID+L+DQL GA FSKIDL SGYH I + + D++KTA RTRYGH+E+ VMPFG+
Sbjct: 533 KYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAEADVRKTAFRTRYGHFEFVVMPFGL 592
Query: 639 TNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEHLKIVLQVLKEKKLYAKL 698
TNAP FM MN +F LD FV++FIDDIL+YSK+ EEH HL+ V++ L+E+KL+AKL
Sbjct: 593 TNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSLEEHEVHLRRVMEKLREQKLFAKL 652
Query: 699 SKCEFWLKEVSFLGHVISGDGIAVDPSKVEAVSQW 733
SKC FW +E+ FLGH++S +G++VDP K+EA+ W
Sbjct: 653 SKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDW 687
>At3g11970 hypothetical protein
Length = 1499
Score = 290 bits (743), Expect = 3e-78
Identities = 155/363 (42%), Positives = 229/363 (62%), Gaps = 24/363 (6%)
Query: 395 FEMDLVCLPLSGMDVILGMNWLE--------YKHVHINC-FSKSVYFSSAEEECGAEFLS 445
F+ D++ +PL G+D++LG+ WLE +K + + F+ +
Sbjct: 460 FQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLLHGLTSGSVREVK 519
Query: 446 TKQLKQMERDGILMFSLMA---SLSIENQ--------AVIDKLQVVCDFPEVYPD---EI 491
++L++++ D + + L S S E + + + + VV + YPD E
Sbjct: 520 AQKLQKLQEDQVQLAMLCVQEVSESTEGELCTINALTSELGEESVVEEVLNEYPDIFIEP 579
Query: 492 PDVPPEREVE-FSINLVPGTKPVSMAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGA 550
+PP RE I L+ G+ PV+ PYR S + +E+ K +EDLL V+ S SP+ +
Sbjct: 580 TALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNGTVQASSSPYAS 639
Query: 551 PVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQI 610
PV+LVKKKDG+ RLC+DYR+LN +T+K+ +P+P I+DLMD+L GA +FSKIDLR+GYHQ+
Sbjct: 640 PVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAGYHQV 699
Query: 611 KVKDEDMQKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILI 670
++ +D+QKTA +T GH+EY VMPFG+TNAP F MN IF FL +FV+VF DDIL+
Sbjct: 700 RMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILV 759
Query: 671 YSKTEEEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVDPSKVEAV 730
YS + EEH +HLK V +V++ KL+AKLSKC F + +V +LGH IS GI DP+K++AV
Sbjct: 760 YSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAV 819
Query: 731 SQW 733
+W
Sbjct: 820 KEW 822
>At1g36590 hypothetical protein
Length = 1499
Score = 290 bits (743), Expect = 3e-78
Identities = 155/363 (42%), Positives = 229/363 (62%), Gaps = 24/363 (6%)
Query: 395 FEMDLVCLPLSGMDVILGMNWLE--------YKHVHINC-FSKSVYFSSAEEECGAEFLS 445
F+ D++ +PL G+D++LG+ WLE +K + + F+ +
Sbjct: 460 FQSDILLIPLQGIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLLHGLTSGSVREVK 519
Query: 446 TKQLKQMERDGILMFSLMA---SLSIENQ--------AVIDKLQVVCDFPEVYPD---EI 491
++L++++ D + + L S S E + + + + VV + YPD E
Sbjct: 520 AQKLQKLQEDQVQLAMLCVQEVSESTEGELCTINALTSELGEESVVEEVLNEYPDIFIEP 579
Query: 492 PDVPPEREVE-FSINLVPGTKPVSMAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGA 550
+PP RE I L+ G+ PV+ PYR S + +E+ K +EDLL V+ S SP+ +
Sbjct: 580 TALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNGTVQASSSPYAS 639
Query: 551 PVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQI 610
PV+LVKKKDG+ RLC+DYR+LN +T+K+ +P+P I+DLMD+L GA +FSKIDLR+GYHQ+
Sbjct: 640 PVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAGYHQV 699
Query: 611 KVKDEDMQKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILI 670
++ +D+QKTA +T GH+EY VMPFG+TNAP F MN IF FL +FV+VF DDIL+
Sbjct: 700 RMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILV 759
Query: 671 YSKTEEEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVDPSKVEAV 730
YS + EEH +HLK V +V++ KL+AKLSKC F + +V +LGH IS GI DP+K++AV
Sbjct: 760 YSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAV 819
Query: 731 SQW 733
+W
Sbjct: 820 KEW 822
>At2g05610 putative retroelement pol polyprotein
Length = 780
Score = 271 bits (694), Expect = 2e-72
Identities = 129/257 (50%), Positives = 185/257 (71%), Gaps = 2/257 (0%)
Query: 478 QVVCDFPEVYPDEIPDVPPEREV-EFSINLVPGTKPVSMAPYRMSASELSELKKQLEDLL 536
+VV +FP+++ E D+PP R + I L+ + PV+ PYR + +E+ K ++D+L
Sbjct: 9 KVVTEFPDIFV-EPTDLPPFRAPHDHKIELLEDSNPVNQRPYRYVVHQKNEIDKIVDDML 67
Query: 537 EKKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAR 596
++ S SP+ +PV+LVKKKDG+ RLC+DYR+LN +T+K+R+P+P I+DLMD+L G+
Sbjct: 68 ASGTIQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDRFPIPLIEDLMDELGGSN 127
Query: 597 VFSKIDLRSGYHQIKVKDEDMQKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAF 656
V+SKIDLR+GYHQ+++ D+ KTA +T GHYEY VMPFG+TNAP F MN F F
Sbjct: 128 VYSKIDLRAGYHQVRMDPLDIHKTAFKTHNGHYEYLVMPFGLTNAPASFQSLMNSFFKPF 187
Query: 657 LDRFVVVFIDDILIYSKTEEEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVIS 716
L +FV+VF DDILIYS + EEH +HL+ V +V++ L+AK+SKC F + V +LGH IS
Sbjct: 188 LRKFVLVFFDDILIYSTSMEEHKKHLEAVFEVMRVHHLFAKMSKCAFAVPRVEYLGHFIS 247
Query: 717 GDGIAVDPSKVEAVSQW 733
G+GIA DP+K++AV W
Sbjct: 248 GEGIATDPAKIKAVQDW 264
>At1g35370 hypothetical protein
Length = 1447
Score = 265 bits (677), Expect = 1e-70
Identities = 145/364 (39%), Positives = 225/364 (60%), Gaps = 34/364 (9%)
Query: 395 FEMDLVCLPLSGMDVILGMNWLE--------YKHVHINCFSKSV------YFSSAEEECG 440
F+ D++ +PL G+D++LG+ WLE +K + + F K+ + + +
Sbjct: 439 FQSDILLIPLQGVDMVLGVQWLETLGRISWEFKKLEMQFFYKNQRVWLHGIITGSVRDIK 498
Query: 441 AEFLSTKQLKQMERDGILMFSLMA-------SLSIENQAVIDKL---QVVCDFPEVYPDE 490
A L Q Q++ + + +++ S+S V+++ +V +FP+V+ E
Sbjct: 499 AHKLQKTQADQIQLAMVCVREVVSDEEQEIGSISALTSDVVEESVVQNIVEEFPDVFA-E 557
Query: 491 IPDVPPEREV-EFSINLVPGTKPVSMAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWG 549
D+PP RE + I L+ G PV+ PYR + E+ K ++D+++ ++ S SP+
Sbjct: 558 PTDLPPFREKHDHKIKLLEGANPVNQRPYRYVVHQKDEIDKIVQDMIKSGTIQVSSSPFA 617
Query: 550 APVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQ 609
+PV+LVKKKDG+ RLC+DY +LN +T+K+R+ +P I+DLMD+L G+ VFSKIDLR+GYHQ
Sbjct: 618 SPVVLVKKKDGTWRLCVDYTELNGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQ 677
Query: 610 IKVKDEDMQKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDIL 669
+++ +D+QKTA +T GH+EY VM FG+TNAP F MN +F FL +FV+VF DDIL
Sbjct: 678 VRMDPDDIQKTAFKTHNGHFEYLVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDIL 737
Query: 670 IYSKTEEEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVDPSKVEA 729
IYS + EEH EHL++V +V++ KL+AK SK LGH IS I DP+K++A
Sbjct: 738 IYSSSIEEHKEHLRLVFEVMRLHKLFAKGSK--------EHLGHFISAREIETDPAKIQA 789
Query: 730 VSQW 733
V +W
Sbjct: 790 VKEW 793
>At1g36120 putative reverse transcriptase gb|AAD22339.1
Length = 1235
Score = 243 bits (620), Expect = 6e-64
Identities = 131/291 (45%), Positives = 176/291 (60%), Gaps = 29/291 (9%)
Query: 398 DLVCLPLSGMDVILGMNWLEYKHVHINCFSKSVYFSSAEEECGAE---------FLSTKQ 448
DL+ P+ D ILGM+WL++ VH++C V F E + +S Q
Sbjct: 412 DLIINPVVLYDAILGMDWLDHYRVHLDCHRGRVSFERPEGRLVYQGVRPTSRSLVISEVQ 471
Query: 449 LKQMERDGILMFSLMASLSIE-NQAVIDKLQVVCDFPEVYPDEIPDVPPEREVEFSINLV 507
+++M G + + S+S Q + + VV +F +V+ + +PP R F+I L
Sbjct: 472 VEKMIEKGCEAYLVTISMSESVGQVAVSDIWVVQEFEDVF-QSLQGLPPSRSDPFTIELE 530
Query: 508 PGTKPVSMAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDGSMRLCID 567
GT P+S PYRM +E++ELKKQLEDLL K F+RPS S WGAP
Sbjct: 531 LGTAPLSKTPYRMVPAEIAELKKQLEDLLGKGFIRPSTSRWGAP---------------- 574
Query: 568 YRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTALRTRYG 627
LN+VT+KN+YPLPRID+L+DQL GA FSKIDL GYHQ + + D++KTA RTRYG
Sbjct: 575 --GLNRVTLKNKYPLPRIDELLDQLRGATCFSKIDLTPGYHQFPIAEADVRKTAFRTRYG 632
Query: 628 HYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEH 678
H+E+ VMPFG+TNAP M MN +F FLD FV++FIDDIL+Y K+ EEH
Sbjct: 633 HFEFVVMPFGLTNAPTALMRLMNSVFQEFLDEFVIIFIDDILVYFKSPEEH 683
>At2g06890 putative retroelement integrase
Length = 1215
Score = 227 bits (578), Expect = 4e-59
Identities = 131/375 (34%), Positives = 204/375 (53%), Gaps = 62/375 (16%)
Query: 395 FEMDLVC--LPLSGMDVILGMNWLEYKHVHINCFS----------KSVYFSSAEEECGAE 442
+E +++C LP+ ++LG W + V + F+ K++ S E +
Sbjct: 292 YEDEILCDVLPMEAGHILLGRPWQSDRKVMHDGFTNRHSFEFKGGKTILVSMTPHEVYQD 351
Query: 443 FLSTKQLKQM-------------------ERDGILMFSLMASL-SIENQAVI---DKLQV 479
+ KQ K+ + +L+F +L S+ N A + + +
Sbjct: 352 QIHLKQKKEQVVKQPNFFAKSGEVKSAYSSKQPMLLFVFKEALTSLTNFAPVLPSEMTSL 411
Query: 480 VCDFPEVYPDEIPD-VPPEREVEFSINLVPGTKPVSMAPYRMSASELSELKKQLEDLLEK 538
+ D+ +V+P++ P +PP R +E I+ VPG + YR + E EL++Q
Sbjct: 412 LQDYKDVFPEDNPKGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELQRQ------- 464
Query: 539 KFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVF 598
KDGS R+C D R +N VT+K +P+PR+DD++D+L G+ +F
Sbjct: 465 -------------------KDGSWRMCFDCRAINNVTVKYCHPIPRLDDMLDELHGSSIF 505
Query: 599 SKIDLRSGYHQIKVKDEDMQKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLD 658
SKIDL+SGYHQI++ + D KTA +T++G YE+ VMPFG+T+AP FM MN + AF+
Sbjct: 506 SKIDLKSGYHQIRMNEGDEWKTAFKTKHGLYEWLVMPFGLTHAPSTFMRLMNHVLRAFIG 565
Query: 659 RFVVVFIDDILIYSKTEEEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGD 718
FV+V+ DDIL+YS++ EH EHL VL VL++++LYA L KC F + FLG V+S D
Sbjct: 566 IFVIVYFDDILVYSESLREHIEHLDSVLNVLRKEELYANLKKCTFCTDNLVFLGFVVSAD 625
Query: 719 GIAVDPSKVEAVSQW 733
G+ VD KV+A+ W
Sbjct: 626 GVKVDEEKVKAIRDW 640
>At4g04230 putative transposon protein
Length = 315
Score = 197 bits (500), Expect = 5e-50
Identities = 105/266 (39%), Positives = 162/266 (60%), Gaps = 43/266 (16%)
Query: 443 FLSTKQL-KQMERDG---ILMFSLMASLSIENQAVIDKLQVVCD-FPEVYPDEIPDVPPE 497
+LS+K + K M G +++F S I + + ++QVV + +++P+EIP
Sbjct: 65 YLSSKDVCKTMSAKGTVLLMVFKECLSTGIGDPELSAEVQVVLHWYKDLFPEEIP----- 119
Query: 498 REVEFSINLVPGTKPVSMAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLVKK 557
PG P+ K ++R S+SP PVLLV K
Sbjct: 120 ----------PGLPPI-----------------------HKGYIRESLSPCAVPVLLVPK 146
Query: 558 KDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDM 617
KDG+ R+C+D R +N +TIK R+P+PR+ D++D+L GA +FSK+DLRSGYHQ+++++ D
Sbjct: 147 KDGTWRMCLDCRAINNITIKYRHPIPRLYDMLDELSGAIIFSKVDLRSGYHQVRMREGDE 206
Query: 618 QKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEE 677
KTA +T+ G YE VMPFG+TNAP FM MN++ +F+ +FVVV+ DDILIY+K+ +
Sbjct: 207 WKTAFKTKQGLYECLVMPFGLTNAPSTFMRLMNQVLRSFIGKFVVVYFDDILIYNKSYSD 266
Query: 678 HAEHLKIVLQVLKEKKLYAKLSKCEF 703
H + L+++L+ L+++ LYA L KC F
Sbjct: 267 HIQPLELILKTLRKEGLYANLKKCTF 292
>At4g08100 putative polyprotein
Length = 1054
Score = 189 bits (480), Expect = 1e-47
Identities = 86/167 (51%), Positives = 120/167 (71%)
Query: 567 DYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTALRTRY 626
D R +N +T+K R+P+PR+DD +D+L G+ +FSKIDL+SGYHQ ++K+ D KTA++T+
Sbjct: 527 DCRAINNITVKYRHPIPRLDDTLDKLHGSSIFSKIDLKSGYHQTRMKEGDEWKTAIKTKQ 586
Query: 627 GHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEHLKIVL 686
YE+ VMPFG+TNAP FM MN + + FV+V+ DDIL+YSK E H HLK+VL
Sbjct: 587 RLYEWLVMPFGLTNAPNTFMRLMNHVLRKHIGVFVIVYFDDILVYSKNLEYHVMHLKLVL 646
Query: 687 QVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVDPSKVEAVSQW 733
+L+++KLYA L KC F + FLG V+S DGI VD KV+A+ +W
Sbjct: 647 DLLRKEKLYANLKKCTFCTDNLVFLGFVVSADGIKVDEEKVKAIREW 693
>At4g03650 putative reverse transcriptase
Length = 839
Score = 170 bits (430), Expect = 6e-42
Identities = 71/120 (59%), Positives = 97/120 (80%)
Query: 614 DEDMQKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSK 673
+ D++KTA RTRYGH+E+ VMPFG+TNAP FM MN +F FLD FV++FIDDIL+YSK
Sbjct: 518 EADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSK 577
Query: 674 TEEEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVDPSKVEAVSQW 733
+ EEH HL+ V++ L+E+KL+AKLSKC FW +E+ FLGH++S +G++VDP K+EA+ W
Sbjct: 578 SPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDW 637
Score = 88.2 bits (217), Expect = 3e-17
Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 9/155 (5%)
Query: 388 LSMFGRDFEMDLVCLPLSGMDVILGMNWLEYKHVHINCFSKSVYFSSAEEECGAEFLSTK 447
+ + G DL+ + DVILGM+WL++ VH++C V F E G E +
Sbjct: 377 IQIAGESLPADLIISHVELYDVILGMDWLDHYRVHLDCHRGRVSFERPEGSAGREN-DRE 435
Query: 448 QLKQMERDGILMFSLMASLSIENQAVIDKLQVVCDFPEVYPDEIPDVPPEREVEFSINLV 507
L+ + D I + Q + ++VV +F V+ + +PP R F+I L
Sbjct: 436 GLRGLPGDDIYA-------GVCGQVAVSDIRVVQEFQYVF-QSLQGLPPSRSDPFTIELE 487
Query: 508 PGTKPVSMAPYRMSASELSELKKQLEDLLEKKFVR 542
P T P+S APYRM+ ++++ELKKQLEDLL + VR
Sbjct: 488 PKTAPLSKAPYRMAPAKMAELKKQLEDLLAEADVR 522
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 148 bits (373), Expect = 3e-35
Identities = 79/228 (34%), Positives = 125/228 (54%), Gaps = 1/228 (0%)
Query: 504 INLVPGTKPVSMAPYRMSASELSELKKQLEDLLEK-KFVRPSVSPWGAPVLLVKKKDGSM 562
+N+ P KP+ ++ ++ ++++ LL+ V W ++VKKK+G
Sbjct: 774 LNVDPTYKPLKQKRRKLGPDRTKDVNEEVKKLLDAGSIVEVRYPDWLRNPVVVKKKNGKW 833
Query: 563 RLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTAL 622
R+CID+ LNK K+ +PLP ID L++ G + S +D SGY+QI + D +KT
Sbjct: 834 RVCIDFTDLNKACPKDSFPLPHIDRLVEATAGNELLSFMDAFSGYNQILMHQNDREKTVF 893
Query: 623 RTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEHL 682
T G Y YKVMPFG+ NA + +N++F LD + V+IDD+L+ S EEH HL
Sbjct: 894 ITDQGTYCYKVMPFGLKNAGATYPRLVNQMFTDQLDHSMEVYIDDMLVKSLRAEEHITHL 953
Query: 683 KIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVDPSKVEAV 730
+ QVL + SKC F + FLG++++ GI +P ++ A+
Sbjct: 954 RQCFQVLNRYNMKLNPSKCTFGVTSGEFLGYLVTRRGIEANPKQISAI 1001
>At1g20390 hypothetical protein
Length = 1791
Score = 147 bits (372), Expect = 3e-35
Identities = 79/228 (34%), Positives = 126/228 (54%), Gaps = 1/228 (0%)
Query: 504 INLVPGTKPVSMAPYRMSASELSELKKQLEDLLEK-KFVRPSVSPWGAPVLLVKKKDGSM 562
+N+ P KPV ++ + +++E LL+ + + W A ++VKKK+G
Sbjct: 769 LNVDPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKW 828
Query: 563 RLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTAL 622
R+C+DY LNK K+ YPLP ID L++ G + S +D SGY+QI + +D +KT+
Sbjct: 829 RVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSF 888
Query: 623 RTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEHL 682
T G Y YKVM FG+ NA + ++N++ + R V V+IDD+L+ S E+H EHL
Sbjct: 889 VTDRGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHL 948
Query: 683 KIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVDPSKVEAV 730
VL + +KC F + FLG+V++ GI +P ++ A+
Sbjct: 949 SKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAI 996
>At2g06170 putative Ty3-gypsy-like retroelement pol polyprotein
Length = 587
Score = 144 bits (362), Expect = 5e-34
Identities = 64/113 (56%), Positives = 90/113 (79%)
Query: 569 RQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTALRTRYGH 628
+ +NK+TIK R+P+P++DD++D+L G++VFSKIDLRSGYHQI+++ D KT +++ G
Sbjct: 401 KAINKITIKYRFPIPQLDDMLDELSGSKVFSKIDLRSGYHQIRIRPGDEWKTDFKSKDGL 460
Query: 629 YEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEH 681
YE++VMPFG++NAP FM MN+I F FVVV+ DDILIYSKT+EE+ EH
Sbjct: 461 YEWQVMPFGMSNAPSTFMRLMNQILRPFTGSFVVVYFDDILIYSKTKEEYLEH 513
>At2g14400 putative retroelement pol polyprotein
Length = 1466
Score = 142 bits (358), Expect = 1e-33
Identities = 73/212 (34%), Positives = 123/212 (57%), Gaps = 1/212 (0%)
Query: 519 RMSASELSELKKQLEDLLEKKFVRPSVSP-WGAPVLLVKKKDGSMRLCIDYRQLNKVTIK 577
++ + +++ LL+ +R P W A ++VKKK+G R+CID+ LNK K
Sbjct: 471 KLGVERAKAVNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKACPK 530
Query: 578 NRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTALRTRYGHYEYKVMPFG 637
+ +PLP ID L++ G + S +D SGY+QI + ED +KT T G Y YKVMPFG
Sbjct: 531 DSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRGIYCYKVMPFG 590
Query: 638 VTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEHLKIVLQVLKEKKLYAK 697
+ NA + +N++F + + + V+IDD+LI S +E+H +HL+ +L + ++
Sbjct: 591 LRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMKLN 650
Query: 698 LSKCEFWLKEVSFLGHVISGDGIAVDPSKVEA 729
+KC F + FLG++++ GI +P+++ A
Sbjct: 651 PAKCTFGVPSGEFLGYIVTKRGIEANPNQINA 682
>At2g14380 putative retroelement pol polyprotein
Length = 764
Score = 134 bits (338), Expect = 3e-31
Identities = 71/228 (31%), Positives = 122/228 (53%), Gaps = 1/228 (0%)
Query: 504 INLVPGTKPVSMAPYRMSASELSELKKQLEDLLEK-KFVRPSVSPWGAPVLLVKKKDGSM 562
+N+ P K V ++ + +++ LL+ V W A ++VKKK+
Sbjct: 489 LNVDPTFKLVKQKRRKLGPERSKAVNDEVDKLLDAGSIVEVKYPEWLANPVVVKKKNDKW 548
Query: 563 RLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTAL 622
R+CID+ LNK K+ +PLP ID +++ G + S +D SGY+QI + +D +KT+
Sbjct: 549 RVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQIPMHKDDQEKTSF 608
Query: 623 RTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEHL 682
G Y YKVMPFG+ N + +N++F L + + V+IDD+L+ S +H +HL
Sbjct: 609 IIDRGTYCYKVMPFGLKNVGARYQRLVNQMFAPQLGKTMEVYIDDMLVKSTRSADHIDHL 668
Query: 683 KIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVDPSKVEAV 730
K + L + + +KC F + FLG++++ GI +P ++ A+
Sbjct: 669 KACFETLNKYNMKLNPAKCLFGVTSGEFLGYIVTKRGIEANPKQIRAI 716
>At2g06470 putative retroelement pol polyprotein
Length = 899
Score = 131 bits (329), Expect = 3e-30
Identities = 61/98 (62%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 616 DMQKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTE 675
D++KTA RTRYGH+E+ VMPFG+TNAP FM+ MN +F FLD FV++FIDDIL+YSK+
Sbjct: 287 DVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVYSKSW 346
Query: 676 EEHAEHLKIVLQVLKEKKLYAKLSKCEFWLK--EVSFL 711
E H EHL+ VL+ L+E +L+AKLSKC FW + E SFL
Sbjct: 347 EAHQEHLRAVLERLREHELFAKLSKCSFWQRSCEKSFL 384
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.360 0.161 0.597
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,461,590
Number of Sequences: 26719
Number of extensions: 1048550
Number of successful extensions: 4655
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4559
Number of HSP's gapped (non-prelim): 74
length of query: 1445
length of database: 11,318,596
effective HSP length: 112
effective length of query: 1333
effective length of database: 8,326,068
effective search space: 11098648644
effective search space used: 11098648644
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 67 (30.4 bits)
Medicago: description of AC146805.1