BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146784.13 + phase: 0 /pseudo
         (36 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g01930 (1-4)-beta-mannan endohydrolase-like protein                 46  4e-06
At4g28320 putative (1-4)-beta-mannan endohydrolase                     32  0.048
At5g66460 mannan endo-1,4-beta-mannosidase                             32  0.063
At2g20680 (1-4)-beta-mannan endohydrolase                              32  0.063
At3g10900 putative (1-4)-beta-mannan endohydrolase                     30  0.24
At3g30540 putative beta-mannan endohydrolase                           30  0.31
At1g02310 (1-4)-beta-mannan endohydrolase precursor like protein       29  0.41
At3g10890 putative (1-4)-beta-mannan endohydrolase                     27  2.7

>At5g01930 (1-4)-beta-mannan endohydrolase-like protein
          Length = 448

 Score = 45.8 bits (107), Expect = 4e-06
 Identities = 19/27 (70%), Positives = 23/27 (84%)

Query: 1   MDAHIEDTEKYLGMPVVFSEFGVSSKD 27
           M AH+ED E YLGMPV+F+EFGVS+ D
Sbjct: 320 MQAHVEDAEMYLGMPVLFTEFGVSAHD 346


>At4g28320 putative (1-4)-beta-mannan endohydrolase
          Length = 431

 Score = 32.3 bits (72), Expect = 0.048
 Identities = 14/27 (51%), Positives = 21/27 (76%)

Query: 1   MDAHIEDTEKYLGMPVVFSEFGVSSKD 27
           M +HIED  K L  PV+F+EFG+S+++
Sbjct: 315 MQSHIEDGLKELKKPVLFTEFGLSNQN 341


>At5g66460 mannan endo-1,4-beta-mannosidase
          Length = 431

 Score = 32.0 bits (71), Expect = 0.063
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 1   MDAHIEDTEKYLGMPVVFSEFGVSSK 26
           +DAHI+D +  L  P++ +EFG S K
Sbjct: 301 LDAHIQDAQNVLHKPIILAEFGKSMK 326


>At2g20680 (1-4)-beta-mannan endohydrolase
          Length = 403

 Score = 32.0 bits (71), Expect = 0.063
 Identities = 14/25 (56%), Positives = 20/25 (80%)

Query: 1   MDAHIEDTEKYLGMPVVFSEFGVSS 25
           M +HIED +K L  PV+F+EFG+S+
Sbjct: 286 MLSHIEDGDKELKKPVLFTEFGLSN 310


>At3g10900 putative (1-4)-beta-mannan endohydrolase
          Length = 408

 Score = 30.0 bits (66), Expect = 0.24
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 1   MDAHIEDTEKYLGMPVVFSEFGVSS 25
           ++ HIED +  L  PV+ +EFG+ S
Sbjct: 303 LEGHIEDAQNILKKPVILAEFGLGS 327


>At3g30540 putative beta-mannan endohydrolase
          Length = 351

 Score = 29.6 bits (65), Expect = 0.31
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 1   MDAHIEDTEKYLGMPVVFSEFGVSS 25
           ++ HIED +  L  PV+ +EFG+ S
Sbjct: 287 LEGHIEDAQNNLKKPVILAEFGLGS 311


>At1g02310 (1-4)-beta-mannan endohydrolase precursor like protein
          Length = 411

 Score = 29.3 bits (64), Expect = 0.41
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 3   AHIEDTEKYLGMPVVFSEFGVSSK 26
           AHIED +  +  P++ +EFG SSK
Sbjct: 302 AHIEDCDNIIKKPLLITEFGKSSK 325


>At3g10890 putative (1-4)-beta-mannan endohydrolase
          Length = 414

 Score = 26.6 bits (57), Expect = 2.7
 Identities = 10/32 (31%), Positives = 17/32 (52%)

Query: 1   MDAHIEDTEKYLGMPVVFSEFGVSSKDLATTQ 32
           ++ H+ED +  L  P++  EFG  +     TQ
Sbjct: 304 LECHLEDAQNILKKPLILGEFGKPTNTPGYTQ 335


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.314    0.130    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 736,045
Number of Sequences: 26719
Number of extensions: 14377
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 8
length of query: 36
length of database: 11,318,596
effective HSP length: 12
effective length of query: 24
effective length of database: 10,997,968
effective search space: 263951232
effective search space used: 263951232
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)