BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146776.17 - phase: 0
(304 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18400 unknown protein 267 6e-72
At5g05660 putative protein 34 0.11
At1g65800 receptor kinase, putative 32 0.56
At3g04340 unknown protein 31 0.95
At4g29380 unknown protein 30 1.2
At4g17060 unknown protein 30 1.6
At5g20320 CAF-like protein 29 2.8
At1g10170 hypothetical protein 29 2.8
At4g12010 like disease resistance protein (TMV N-like) 29 3.6
At3g62910 translation releasing factor RF-1 -like protein 29 3.6
At3g06290 hypothetical protein 29 3.6
At4g01350 putative CHP-rich zinc finger protein 28 4.7
At5g51330 DYAD/SWITCH1 (SWI1) 28 6.2
At2g07550 putative retroelement pol polyprotein 28 6.2
At1g50620 hypothetical protein 28 6.2
At5g58450 unknown protein 28 8.0
At3g07280 unknown protein 28 8.0
>At5g18400 unknown protein
Length = 272
Score = 267 bits (682), Expect = 6e-72
Identities = 144/259 (55%), Positives = 181/259 (69%), Gaps = 17/259 (6%)
Query: 40 VLACTDEAVLPVSQVFDAIRELGNEGVEKLDPLVITSASSLSKFPVESSSVDLVVLIWKS 99
VLA TD+ VLPVS V ++ELG E +E DPL+IT AS++++FP+++SSV+ V+ I K+
Sbjct: 10 VLAVTDDVVLPVSSVLAIMKELGKEVIESFDPLIITQASTINQFPLDASSVEAVLAISKT 69
Query: 100 LDFPIDQLTQEVLRVLKAGGTTLIHKSSQSAVGSGDKMIPDLENKLLLAGFSEIQALQ-- 157
DFP D++ E R+LK GGT + K + G + I + ++ LAGF E Q L
Sbjct: 70 SDFPSDKICGEFSRILKPGGTVSVCKVLEGETGEIQQTI---QRRVTLAGFLEPQCLDLK 126
Query: 158 ---------SSVIKAKKPSWKIGSSFALKKFVKSSPKVQIDFDSDLIDKNSLLSEEDLKK 208
S IKAKKPSWKIGSSFALKK V + K+ +D D DLID++SLL+EEDL K
Sbjct: 127 SIKLSTFSLSFGIKAKKPSWKIGSSFALKKPVTNLFKIDLDDDVDLIDEDSLLTEEDLMK 186
Query: 209 PELP-SGDCEIGPTRKACKNCSCGRAEEEEKVLKLGLTAEQINNPQSACGSCGLGDAFRC 267
P+LP + CE T+KACKNC CGRAE EEK +KLGLT +QI NPQS+CGSCGLGDAFRC
Sbjct: 187 PQLPVASGCET--TKKACKNCVCGRAEIEEKAVKLGLTEDQIENPQSSCGSCGLGDAFRC 244
Query: 268 STCPYKGLPAFKMGETVLL 286
TCPYKGLP FK+GE V L
Sbjct: 245 GTCPYKGLPPFKLGEKVTL 263
>At5g05660 putative protein
Length = 820
Score = 33.9 bits (76), Expect = 0.11
Identities = 25/68 (36%), Positives = 33/68 (47%), Gaps = 12/68 (17%)
Query: 215 DCEIGPTR-KACKNCSCGRAEEE----EKVLKLGLTAEQINNPQSACGS--CGLG-DAFR 266
D E P R +A CSCG+ +EE E+V + + E + N CG C G A
Sbjct: 261 DGECPPCRERAVYKCSCGKVKEEKDCCERVFRCEASCENMLN----CGKHVCERGCHAGE 316
Query: 267 CSTCPYKG 274
C CPY+G
Sbjct: 317 CGLCPYQG 324
>At1g65800 receptor kinase, putative
Length = 847
Score = 31.6 bits (70), Expect = 0.56
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 96 IWKSLDFPIDQLTQEVLRVL--KAGGTTLIHKSSQSAVGSGDKMIPDLENKLLLAGFSEI 153
+W+S DFP D L ++ K+GG I +S ++ + D D KL +GF E
Sbjct: 150 LWQSFDFPTDTLLSDMKMGWDNKSGGFNRILRSWKT---TDDPSSGDFSTKLRTSGFPEF 206
Query: 154 QALQSSVIKAKKPSWKIGSSFA 175
I + W +G+ F+
Sbjct: 207 YIYNKESITYRSGPW-LGNRFS 227
>At3g04340 unknown protein
Length = 1320
Score = 30.8 bits (68), Expect = 0.95
Identities = 42/188 (22%), Positives = 85/188 (44%), Gaps = 13/188 (6%)
Query: 45 DEAVLPVSQVFDAIRELGNEGVEKLDPLVITSASSLSKFPVESSSVDLVVLIWKS--LDF 102
DEA+ Q +R+ E +EKL+ V S +K +D ++L ++ L F
Sbjct: 243 DEALSLKKQSEKLLRKGAREKMEKLEESVDIMESEYNKIWERIDEIDDIILKKETTTLSF 302
Query: 103 PIDQLT---QEVLRVLKAGGTTLIHKSSQSAVGSGDKMIP--DLENKLLLAGFSEI-QAL 156
+ +L +E + ++K+ L KS +S S + +++ +L+ A + Q +
Sbjct: 303 GVRELIFIERECVELVKSFNRELNQKSFESVPESSITKLSRSEIKQELVNAQRKHLEQMI 362
Query: 157 QSSVIKAKK--PSW---KIGSSFALKKFVKSSPKVQIDFDSDLIDKNSLLSEEDLKKPEL 211
+V++ ++ P + + S +KK ++ S K+Q D + + + EE L +
Sbjct: 363 LPNVLELEEVDPFFDRDSVDFSLRIKKRLEESKKLQRDLQNRIRKRMKKFGEEKLFVQKT 422
Query: 212 PSGDCEIG 219
P G+ G
Sbjct: 423 PEGEAVKG 430
>At4g29380 unknown protein
Length = 1494
Score = 30.4 bits (67), Expect = 1.2
Identities = 25/101 (24%), Positives = 40/101 (38%), Gaps = 4/101 (3%)
Query: 87 SSSVDLVVLIWKSLDFPIDQLTQEVLRVLKAGG----TTLIHKSSQSAVGSGDKMIPDLE 142
S+S D V +W S D + L G TT++ S+Q VG+ D +I
Sbjct: 1098 SASDDSTVKVWDSRKLEKDISFRSRLTYHLEGSRGMCTTMLRNSTQVVVGASDGVIHMFS 1157
Query: 143 NKLLLAGFSEIQALQSSVIKAKKPSWKIGSSFALKKFVKSS 183
+ G + S ++ KK K G+ +L + S
Sbjct: 1158 IDHISRGLGNVVEKYSGIVDIKKKDVKEGALVSLLNYTADS 1198
>At4g17060 unknown protein
Length = 310
Score = 30.0 bits (66), Expect = 1.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 171 GSSFALKKFVKSSPKVQIDFDSDLIDK 197
GS F LK+ +PKV DFD+D D+
Sbjct: 82 GSGFGLKRKYNGNPKVSADFDADSDDE 108
>At5g20320 CAF-like protein
Length = 1589
Score = 29.3 bits (64), Expect = 2.8
Identities = 15/42 (35%), Positives = 25/42 (58%)
Query: 49 LPVSQVFDAIRELGNEGVEKLDPLVITSASSLSKFPVESSSV 90
+P S++ D +R L + + L +TS+SS+S F SSS+
Sbjct: 62 MPYSEIGDDLRSLDFDHADVSSDLHLTSSSSVSSFSSSSSSL 103
>At1g10170 hypothetical protein
Length = 1188
Score = 29.3 bits (64), Expect = 2.8
Identities = 12/28 (42%), Positives = 17/28 (59%), Gaps = 2/28 (7%)
Query: 212 PSGDCEIGPTRKACKNCSCGRAEEEEKV 239
P GDC++ P+R K C CG EE++
Sbjct: 467 PCGDCDLLPSR--VKTCYCGNTRLEEQI 492
>At4g12010 like disease resistance protein (TMV N-like)
Length = 1219
Score = 28.9 bits (63), Expect = 3.6
Identities = 18/53 (33%), Positives = 30/53 (55%), Gaps = 3/53 (5%)
Query: 67 EKLDPLVITSASSLSKFPVESSSVDLVVL---IWKSLDFPIDQLTQEVLRVLK 116
+ L L+++ SSL KFP+ S +V++++L + KSL I + L LK
Sbjct: 713 QSLQTLILSGCSSLKKFPLISENVEVLLLDGTVIKSLPESIQTFRRLALLNLK 765
>At3g62910 translation releasing factor RF-1 -like protein
Length = 422
Score = 28.9 bits (63), Expect = 3.6
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 66 VEKLDPLVITSASSLSKFPVESSSVDLVVLIWKSLDFPIDQLTQEVLRVLKAGGTTLIHK 125
V+ DP V+++ S K S +D VV +++ QL + + +AG + +
Sbjct: 73 VKLADPDVVSNQSEYQKLAQSMSELDEVVTVFRRFKDCEKQLLESKVLAKEAGDDEDMAE 132
Query: 126 SSQSAVGSGDKMIPDLENKL 145
S + S K I +LE +L
Sbjct: 133 MIGSEINSLTKEIEELEKQL 152
>At3g06290 hypothetical protein
Length = 1713
Score = 28.9 bits (63), Expect = 3.6
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Query: 203 EEDLKKPELPSGDCEIGPTRKACKNCSCGRAEEE---EKVLKLGLTAEQINNPQSACGSC 259
EED+ + PS DC G + K + + E E ++ + + LT +N +
Sbjct: 392 EEDIPRNSFPSQDCTEGEEQARAKRLARFKGELEPIADRPVDIQLTKSPVNKTMKPLDNK 451
Query: 260 GLGDAFRCSTCPYKG--LPAFKMGETVLLLSPSLKLFGVISLVCP 302
++ S KG LP ++ E PSL + GV +CP
Sbjct: 452 QTFNSLESSRDALKGDALPDYENSE-----QPSL-IIGVCPDMCP 490
>At4g01350 putative CHP-rich zinc finger protein
Length = 652
Score = 28.5 bits (62), Expect = 4.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 244 LTAEQINNPQSACGSCGLGDAFRCSTCPYK 273
LT + I+ P CG L + CSTC +K
Sbjct: 73 LTNDSIDGPCDLCGQKLLPPCYSCSTCEFK 102
>At5g51330 DYAD/SWITCH1 (SWI1)
Length = 639
Score = 28.1 bits (61), Expect = 6.2
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 155 ALQSSVIKAKKPSWKIGSSFALKKFVKSSPKVQIDFDSDLID-------------KNSLL 201
A + + +A P K S +K ++++ + S ID K+ +
Sbjct: 163 AYNTRLCRAASPEGKCSSELKSGGMIKWGRRLRVQYQSRHIDTRKNKEGEESSRVKDEVY 222
Query: 202 SEEDLKKPELPSGDCEIGPTRKACKNCSCGRAEEE 236
EE+++K E EIG T++ K + G + +
Sbjct: 223 KEEEMEKEEDDDDGNEIGGTKQEAKEITNGNRKRK 257
>At2g07550 putative retroelement pol polyprotein
Length = 1356
Score = 28.1 bits (61), Expect = 6.2
Identities = 18/59 (30%), Positives = 29/59 (48%), Gaps = 5/59 (8%)
Query: 226 KNCSCGRAEEEEKVLKLGLTAEQINNPQSACGSCGLGDAFRCSTCPYKGLPAFKMGETV 284
KN + G+ E++ K G + + + C +CG FR S+CP + P FK + V
Sbjct: 222 KNENKGKGEQKGK----GKGKKGKSKKKPGCWTCGEEGHFR-SSCPNQNKPQFKQSQVV 275
>At1g50620 hypothetical protein
Length = 629
Score = 28.1 bits (61), Expect = 6.2
Identities = 39/189 (20%), Positives = 77/189 (40%), Gaps = 15/189 (7%)
Query: 44 TDEAVLPVSQ-VFDAIRELGNEGVEKLDPLVITSASSLSKFPVESSSVDLVVLIWKSLDF 102
T E LP + V +++ EG+ L+ T S++ + VE+ V + ++ K++
Sbjct: 399 TAEVQLPAEKGVGKMDQKVSQEGMPHLETAKPTKDSAMEQ-TVEAEDVAMNPIVEKAMSE 457
Query: 103 PIDQLTQEVLRVLKAGG---TTLIHKSSQSAVGSGDKMIPDLENKLLLAGFSEIQALQSS 159
++ + +++A ++ K+ V + D I N+ + A F +
Sbjct: 458 MVEAEGAAINPIVEAEDGAMNPIVEKAMSQIVEAEDAAI----NQAVDANFQTQAPTGND 513
Query: 160 VIKAKKPSWKIGSSFAL------KKFVKSSPKVQIDFDSDLIDKNSLLSEEDLKKPELPS 213
++ PS + S L KK V + +D DKNS + E + E+ +
Sbjct: 514 DAESDDPSEPVSHSETLNPPELEKKEVMRKDATERSVSADCQDKNSKIIAESSLQEEISA 573
Query: 214 GDCEIGPTR 222
E PT+
Sbjct: 574 SQTENSPTQ 582
>At5g58450 unknown protein
Length = 1002
Score = 27.7 bits (60), Expect = 8.0
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 29 LLQDAAKMYGAVLACTDEAVLPVSQVFDAIRELGNEGVEKLDPLVITSASSLS 81
LL+D KM G L+ E + +SQ LG+ V+ L+ V +A SLS
Sbjct: 748 LLEDYTKMLGCSLSDAVEMITEISQGARTSESLGSNLVDWLNFAVFWNAWSLS 800
>At3g07280 unknown protein
Length = 481
Score = 27.7 bits (60), Expect = 8.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 59 RELGNEGVEKLDPLVITSASSLSK 82
+ LGNEG++K +P IT+ SS K
Sbjct: 226 KPLGNEGIKKSEPKNITNGSSKEK 249
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.318 0.135 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,632,525
Number of Sequences: 26719
Number of extensions: 277011
Number of successful extensions: 946
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 933
Number of HSP's gapped (non-prelim): 18
length of query: 304
length of database: 11,318,596
effective HSP length: 99
effective length of query: 205
effective length of database: 8,673,415
effective search space: 1778050075
effective search space used: 1778050075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146776.17