BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146759.1 + phase: 0 /pseudo
         (188 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g29080 AAA-type like ATPase                                         80  8e-16
At1g07510 unknown protein                                              75  2e-14
At4g11090 unknown protein                                              28  3.8
At4g16340 unknown protein                                              27  8.5
At4g01450 unknown protein                                              27  8.5
At1g09380 nodulin N21 like protein                                     27  8.5

>At2g29080 AAA-type like ATPase
          Length = 809

 Score = 79.7 bits (195), Expect = 8e-16
 Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 19/83 (22%)

Query: 53  GKNQEISFQEFKIKVLEPGLVDHIVVSNKELAKIYVKNNESEV----------------- 95
           G+ Q+ISFQEFK K+LEPGLVDHI VSNK +AK+YV++   +                  
Sbjct: 154 GEQQQISFQEFKNKLLEPGLVDHIDVSNKSVAKVYVRSTPKDQQTTDVVHGNGNGIPAKR 213

Query: 96  --AKYKYYFKIGSVDSFERKLKK 116
              +YKYYF IGSVDSFE KL++
Sbjct: 214 TGGQYKYYFNIGSVDSFEEKLEE 236


>At1g07510 unknown protein
          Length = 813

 Score = 75.1 bits (183), Expect = 2e-14
 Identities = 45/94 (47%), Positives = 58/94 (60%), Gaps = 20/94 (21%)

Query: 42  LILSFFYFRPFGKNQEISFQEFKIKVLEPGLVDHIVVSNKELAKIYVKNN---------- 91
           LILS F      + Q+ISFQEFK K+LE GLVDHI VSNKE+AK+YV+++          
Sbjct: 148 LILSTFSLGS-REQQQISFQEFKNKLLEAGLVDHIDVSNKEVAKVYVRSSPKSQTTEEVV 206

Query: 92  ---------ESEVAKYKYYFKIGSVDSFERKLKK 116
                    +    +YKYYF IGSV+SFE KL++
Sbjct: 207 QGPGNGVPAKGRGGQYKYYFNIGSVESFEEKLEE 240


>At4g11090 unknown protein
          Length = 432

 Score = 27.7 bits (60), Expect = 3.8
 Identities = 20/61 (32%), Positives = 29/61 (46%), Gaps = 3/61 (4%)

Query: 19  VAVVGSFQEALKKL---GTLMTLIGGLILSFFYFRPFGKNQEISFQEFKIKVLEPGLVDH 75
           V  +G   E LK L   G L+T   G    +  FRPF K++  + Q   +    PG +DH
Sbjct: 357 VTEMGQESENLKLLDFAGMLLTRPDGHPGPYREFRPFDKDKNATVQNDCLHWCLPGPIDH 416

Query: 76  I 76
           +
Sbjct: 417 L 417


>At4g16340 unknown protein
          Length = 880

 Score = 26.6 bits (57), Expect = 8.5
 Identities = 14/38 (36%), Positives = 23/38 (59%), Gaps = 4/38 (10%)

Query: 126 YVLLILLKPTGFRCFSYYLHSCWLSEFSFIIRNVLMEC 163
           Y LL +++P    C  Y L S ++ +FS + ++VL EC
Sbjct: 78  YDLLYIIEP----CQVYELVSLYMDKFSGVCQSVLHEC 111


>At4g01450 unknown protein
          Length = 343

 Score = 26.6 bits (57), Expect = 8.5
 Identities = 11/26 (42%), Positives = 18/26 (68%)

Query: 32  LGTLMTLIGGLILSFFYFRPFGKNQE 57
           LGTL++L+GGL+L+ +   P   + E
Sbjct: 138 LGTLISLVGGLLLTMYQGIPLTNSPE 163


>At1g09380 nodulin N21 like protein
          Length = 374

 Score = 26.6 bits (57), Expect = 8.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 30  KKLGTLMTLIGGLILSFFYFRPFG 53
           K +GTL+ +IG ++LSF++    G
Sbjct: 134 KVIGTLVCVIGAMVLSFYHGHTIG 157


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.337    0.148    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,812,293
Number of Sequences: 26719
Number of extensions: 142004
Number of successful extensions: 509
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 6
length of query: 188
length of database: 11,318,596
effective HSP length: 93
effective length of query: 95
effective length of database: 8,833,729
effective search space: 839204255
effective search space used: 839204255
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 57 (26.6 bits)