BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146758.6 + phase: 0 /pseudo
(515 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45230 putative non-LTR retroelement reverse transcriptase 244 8e-65
At1g24640 hypothetical protein 230 2e-60
At3g31420 hypothetical protein 228 5e-60
At1g31100 hypothetical protein 226 2e-59
At2g17910 putative non-LTR retroelement reverse transcriptase 221 7e-58
At1g10160 putative reverse transcriptase 214 1e-55
At4g10830 putative protein 211 1e-54
At2g01550 putative non-LTR retroelement reverse transcriptase 209 3e-54
At2g25550 putative non-LTR retroelement reverse transcriptase 208 5e-54
At4g09710 RNA-directed DNA polymerase -like protein 208 7e-54
At2g31520 putative non-LTR retroelement reverse transcriptase 207 1e-53
At2g01840 putative non-LTR retroelement reverse transcriptase 205 6e-53
At1g25430 hypothetical protein 204 7e-53
At2g28980 putative non-LTR retroelement reverse transcriptase 204 9e-53
At2g05200 putative non-LTR retroelement reverse transcriptase 203 2e-52
At4g26360 putative protein 203 2e-52
At1g47910 reverse transcriptase, putative 201 6e-52
At4g15590 reverse transcriptase like protein 197 1e-50
At2g11240 pseudogene 186 3e-47
At2g41580 putative non-LTR retroelement reverse transcriptase 186 3e-47
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 244 bits (623), Expect = 8e-65
Identities = 162/519 (31%), Positives = 259/519 (49%), Gaps = 27/519 (5%)
Query: 10 GDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWF--KGDGKSMSR 67
GDFN + E+ + S F +++ L ++ G F+W+ + D R
Sbjct: 135 GDFNELVDPSEKIG-GPARKESSCLEFRQMLNSCGLWEVNHSGYQFSWYGNRNDELVQCR 193
Query: 68 LDRFLLSEDWCLVWPNCLQIAQMRGLSDHCPLILSVAEENWGPRPS-RMLKCWTDIPGYR 126
LDR + ++ W ++P + SDH PLI ++ +NW + K W G++
Sbjct: 194 LDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNWRKWAGFKYDKRWVQREGFK 253
Query: 127 QFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLATLDEKG 186
+ N W Q S ++ EK + + +W + +I +L+ +L D
Sbjct: 254 DLLCNFWS--QQSTKTNALMMEKIASCRREISKWKRVSKPSSAVRIQELQFKL---DAAT 308
Query: 187 ESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQ-SRIQWLREGDANSKFFHSVLASRRR 245
+ + E A + LS N WQ+ SRI W+R GD N+K+FH+ +RR
Sbjct: 309 KQIPFDRRELARL----KKELSQEYNNEEQFWQEKSRIMWMRNGDRNTKYFHAATKNRRA 364
Query: 246 RNSLCTIV-VDGVVVEGVHPIREAVFCHFENHFRSVNV-----ERPSLTNLQF*SLSVAE 299
+N + ++ +G + +F+ F S +V E +LT L +S
Sbjct: 365 QNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVEELENLTPL----VSDQM 420
Query: 300 GVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRNGKL 359
L+ P + +EV+ A + + +K PGPDG+N ++FW + D+I V F R+G +
Sbjct: 421 NNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSGSI 480
Query: 360 SKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAF 419
+G+N T I LIPK+ +++ DFRPISL +YK++ KL+ANRL+ ++ S+IS+ Q+AF
Sbjct: 481 EEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAAF 540
Query: 420 VKNRQILDGILIANE---AVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPV 476
VK R I D ILIA+E A+ K ++ + K D KAYD V+W +L+ M + F
Sbjct: 541 VKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFAD 600
Query: 477 LWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
W + I CV + VL+NG+P E RGLRQGDPL
Sbjct: 601 HWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPL 639
>At1g24640 hypothetical protein
Length = 1270
Score = 230 bits (586), Expect = 2e-60
Identities = 166/523 (31%), Positives = 255/523 (48%), Gaps = 29/523 (5%)
Query: 7 CVCGDFNAIRSREERRSVSVGQVASDFS--HFNSFIDNNVLVDLPLGGRNFTWF--KGDG 62
C+ GDFN I E+ G SD FN I LV++P G FTW +GD
Sbjct: 95 CMFGDFNDILHNGEKNG---GPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWAGRRGDH 151
Query: 63 KSMSRLDRFLLSEDWCLVWPNCLQ-IAQMRGLSDHCPLILSVAEENWGPRPS-RMLKCWT 120
RLDR +++W +P Q RG SDH P+++ + R R K +
Sbjct: 152 WIQCRLDRAFGNKEWFCFFPVSNQTFLDFRG-SDHRPVLIKLMSSQDSYRGQFRFDKRFL 210
Query: 121 DIPGYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLA 180
++ + W + + ++ + + SL W ++ N L KI+ L+ L
Sbjct: 211 FKEDVKEAIIRTWSRGKHGT--NISVADRLRACRKSLSSWKKQNNLNSLDKINQLEAAL- 267
Query: 181 TLDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHSVL 240
EK +S++ + + + D+ R + Q+SR +WLR G+ NSK+FH+ +
Sbjct: 268 ---EKEQSLVWPIFQRVSV--LKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAV 322
Query: 241 ASRRRRNSLCTIV-VDGVVVEGVHPIREAVFCHFENHFRSVNVERPSLTNLQF*SL---- 295
R+R + + V+G + E +F N F+S N PS F L
Sbjct: 323 KQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSN---PSGFTDWFSGLVPRV 379
Query: 296 SVAEGVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHR 355
S L+ S E+K AV+ +PGPDG++ F + +W + +++ V +F
Sbjct: 380 SEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYWSTVGNQVTSEVKKFFA 439
Query: 356 NGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDA 415
+G + N T + LIPK +P + D RPISL LYKI++K++A RL+ + ++SD
Sbjct: 440 DGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDT 499
Query: 416 QSAFVKNRQILDGILIANEAVDEAR---KLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRM 472
QSAFV R I D IL+A+E V + ++ + + K D KAYD V+W YL S++ +
Sbjct: 500 QSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSL 559
Query: 473 SFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
F + W WI VCVS+ T SVL+N P +RGLRQGDPL
Sbjct: 560 GFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPL 602
>At3g31420 hypothetical protein
Length = 1491
Score = 228 bits (582), Expect = 5e-60
Identities = 153/523 (29%), Positives = 252/523 (47%), Gaps = 27/523 (5%)
Query: 8 VCGDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWF--KGDGKSM 65
+ GDFN I S E+R + + F F + + DL G F+W +GD
Sbjct: 314 IMGDFNEILSNREKRGGRL-RPERTFQDFRNMVRGCNFTDLKSVGDRFSWAGKRGDHHVT 372
Query: 66 SRLDRFLLSEDWCLVWPNCLQIAQMRGLSDHCPLILSVAEENWGPR-----PSRMLKCWT 120
LDR + + +W ++P + G SDH PL+ +++ + R SR+ T
Sbjct: 373 CSLDRTMANNEWHTLFPESETVFMEYGESDHRPLVTNISAQKEERRGFFSYDSRL----T 428
Query: 121 DIPGYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLA 180
G++Q V N+W S G L K + ++ W ++ N +ER+
Sbjct: 429 HKEGFKQVVLNQWHRRNGSFEGDSSLNRKLVECRQAISRWKKNNRVNA-------EERIK 481
Query: 181 TLDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQ-QSRIQWLREGDANSKFFHSV 239
+ K + + T L+ + + I WQ +SR +WL GD N+++FHS
Sbjct: 482 IIRHKLDRAIATGTATPRERRQMRQDLNQAYADEEIYWQTKSRSRWLNAGDRNTRYFHST 541
Query: 240 LASRRRRNSLCTIV-VDGVVVEGVHPIREAVFCHFENHFRSV-NVERPSLTNLQF*SLSV 297
+RR RN L ++ DG + G I + +F++ ++S N Q +
Sbjct: 542 TKTRRCRNRLLSVQDSDGDICRGDENIAKVAINYFDDLYKSTPNTSLRYADVFQGFQQKI 601
Query: 298 AEGVG--LIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHR 355
+ + LI+P + E++ +V+ ++P PDG F ++FW D+K ++ V+ F
Sbjct: 602 TDEINEDLIRPVTELEIEESVFSVAPSRTPDPDGFTADFYQQFWPDIKQKVIDEVTRFFE 661
Query: 356 NGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDA 415
+L + N T + LIPKV+ P + FRPI+L YKI++K+L NRL+ +G I++
Sbjct: 662 RSELDERHNHTNLCLIPKVETPTTIAKFRPIALCNVSYKIISKILVNRLKKHLGGAITEN 721
Query: 416 QSAFVKNRQILDGILIANE---AVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRM 472
Q+AFV R I + +IA+E A+ ++ + K D KAYD ++W +L+ M +M
Sbjct: 722 QAAFVPGRLITNNAIIAHEVYYALKARKRQANSYMALKTDITKAYDRLEWDFLEETMRQM 781
Query: 473 SFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
F W + I +CV+ SVL+NGSP RG+R GDPL
Sbjct: 782 GFNTKWIERIMICVTMVRFSVLINGSPHGTIKPERGIRHGDPL 824
>At1g31100 hypothetical protein
Length = 1090
Score = 226 bits (577), Expect = 2e-59
Identities = 163/528 (30%), Positives = 247/528 (45%), Gaps = 18/528 (3%)
Query: 3 GKNVCVCGDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWFKGDG 62
GK + GDFN + E + V F + L DL G FTW+
Sbjct: 47 GKPWIMLGDFNQVLCPAEHSQATSLNVNRRMKVFRDCLFEAELCDLVFKGNTFTWWNKSA 106
Query: 63 KS--MSRLDRFLLSEDWCLVWPNCLQIAQMRGLSDH--CPLILSVAEENWGPRPSRMLKC 118
+LDR L++E WC +P+ + SDH C +I++ RP R
Sbjct: 107 TRPVAKKLDRILVNESWCSRFPSAYAVFGEPDFSDHASCGVIINPLMHR-EKRPFRFYNF 165
Query: 119 WTDIPGYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKER 178
P + V W S V G + + +K K LK ++ + + NL ++ +
Sbjct: 166 LLQNPDFISLVGELWYSINVVGSSMFKMSKKLKALKNPIRTFSMENFSNLEKRVKEAHNL 225
Query: 179 LATLDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHS 238
+ K S E+ ++ + + C Q+SR+ W+ EGD+N+ +FH
Sbjct: 226 VLYRQNKTLSDPTIPNAALEMEAQRKWLILVKAEESFFC-QRSRVTWMGEGDSNTSYFHR 284
Query: 239 VLASRRRRNSLCTIVVD-GVVVEGVHPIREAVFCHFENHFRSVNVERPSLTNLQF*SL-- 295
+ SR+ N++ I+ D GV ++ I+E +F N V P L F L
Sbjct: 285 MADSRKAVNTIHIIIDDNGVKIDTQLGIKEHCIEYFSNLLGG-EVGPPMLIQEDFDLLLP 343
Query: 296 ---SVAEGVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSE 352
S + L FS ++K+A + S K+ GPDG F KE W + E+ VSE
Sbjct: 344 FRCSHDQKKELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSE 403
Query: 353 FHRNGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVG----SLYKILAKLLANRLRVVI 408
F + L K N+T + LIPK+ N ++NDFRPIS +LYK++A+LL NRL+ ++
Sbjct: 404 FFTSSVLLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLL 463
Query: 409 GSVISDAQSAFVKNRQILDGILIANEAVDEARKLKKDLL-LFKVDFEKAYDSVDWGYLDS 467
VIS QSAF+ R + + +L+A E V + D + KVD KA+DS+ W ++ S
Sbjct: 464 SQVISPFQSAFLPGRFLAENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIIS 523
Query: 468 VMGRMSFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
+ + P + WI C+ST T SV VNG+ F RGLRQG+PL
Sbjct: 524 ALKAIGIPDRFVYWITQCISTPTFSVCVNGNTGGFFKSTRGLRQGNPL 571
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 221 bits (563), Expect = 7e-58
Identities = 169/527 (32%), Positives = 255/527 (48%), Gaps = 27/527 (5%)
Query: 2 RGKNVCVCGDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWF--K 59
R + C+ GDFN IRS +E+ + S F F + N + +L G +FTW +
Sbjct: 105 RAEAWCLIGDFNDIRSNDEKLG-GPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGNR 163
Query: 60 GDGKSMSRLDRFLLSEDWCLVWPNCLQIAQMRGLSDHCPLILSVAEENWGPRPS-RMLKC 118
D +LDR + W ++PN Q + SDH P+++ +N R R K
Sbjct: 164 NDQWVQCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQFRYDKR 223
Query: 119 WTDIPGYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKI--SLKEWHASHS*NLLGKISDLK 176
D P + + W S G F L++ ++ W S N +I L+
Sbjct: 224 LDDDPYCIEVIHRSWNSAMSQG----THSSFFSLIECRRAISVWKHSSDTNAQSRIKRLR 279
Query: 177 ERLATLDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQ-SRIQWLREGDANSKF 235
+ L EK + C D LSL+ + + W+Q SR +WL GD N+ F
Sbjct: 280 KDLDA--EKSIQI-----PCWPRIEYIKDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGF 332
Query: 236 FHSVLASRRRRNSLCTIVVDGVVVEGVHPIREAVFCH--FENHFRSVNV--ERPSLTNLQ 291
FH+ + S R +N L + ++D E + FEN F S + L LQ
Sbjct: 333 FHATVHSERLKNEL-SFLLDENDQEFTRNSDKGKIASSFFENLFTSTYILTHNNHLEGLQ 391
Query: 292 F*SLSVAEGVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVS 351
++ LI+ + EV AV+ + +PGPDG F ++ W +K +I +
Sbjct: 392 A-KVTSEMNHNLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVKHQILTEIF 450
Query: 352 EFHRNGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSV 411
F G L + N T I LIPK+ +PQR++D RPISL LYKI++K+L RL+ + ++
Sbjct: 451 GFFETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAI 510
Query: 412 ISDAQSAFVKNRQILDGILIANEAVDEAR---KLKKDLLLFKVDFEKAYDSVDWGYLDSV 468
+S QSAFV R I D IL+A+E + R ++ K+ + FK D KAYD V+W +L+++
Sbjct: 511 VSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETM 570
Query: 469 MGRMSFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
M + F W WI CV++ + SVL+NG P RG+RQGDPL
Sbjct: 571 MTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPL 617
>At1g10160 putative reverse transcriptase
Length = 1118
Score = 214 bits (544), Expect = 1e-55
Identities = 149/531 (28%), Positives = 255/531 (47%), Gaps = 40/531 (7%)
Query: 10 GDFNAIRSREERRSVSVGQV-ASDFSHFNSFIDNNVLVDLPLGGRNFTW--FKGDGKSMS 66
GDFN I + E S++ + + ++ L DLP G FTW + D +
Sbjct: 141 GDFNQIAAASEHYSINQSLLNLRGMEDLQCCLRDSQLSDLPSRGVFFTWSNHQQDNPILR 200
Query: 67 RLDRFLLSEDWCLVWPNCLQIAQMRGLSDHCPLILSVAEENWGPRPSRMLKCWTDI---P 123
+LDR L + +W V+P+ L + G SDH P I+ + +N P + K ++ + P
Sbjct: 201 KLDRALANGEWFAVFPSALAVFDPPGDSDHAPCIILI--DNQPPPSKKSFKYFSFLSSHP 258
Query: 124 GYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLATLD 183
Y +S W+ + G + L++ K+ K+ + + N+ + + RL +
Sbjct: 259 SYLAALSTAWEENTLVGSHMFSLRQHLKVAKLCCRTLNRLRFSNIQQRTAQSLTRLEDIQ 318
Query: 184 EKGESMLLT---DEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHSVL 240
+ LLT D H + + S Q+SRI+WL EGDAN++FFH +
Sbjct: 319 VE----LLTSPSDTLFRREHVARKQWIFFAAALESFFRQKSRIRWLHEGDANTRFFHRAV 374
Query: 241 ASRRRRNSLCTIVVD-GVVVEGVHPIREAVFCHFENHFRSVNVERPSLTNLQF*SLSVAE 299
+ + N + + D G VE V I+ + ++ +H + E + SV +
Sbjct: 375 IAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYY-SHLLGIPSENVT-------PFSVEK 426
Query: 300 GVGLIKPFSID--------------EVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDE 345
GL+ PF D E+ ++ K+PGPDG F E W +K
Sbjct: 427 IKGLL-PFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFFIEAWAIVKSS 485
Query: 346 IFRFVSEFHRNGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLR 405
+ + EF +G L +G N+T I LIPKV RL FRP++ ++YK++ ++++ RL+
Sbjct: 486 VVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLK 545
Query: 406 VVIGSVISDAQSAFVKNRQILDGILIANEAVDEARKLKKDLL-LFKVDFEKAYDSVDWGY 464
+ I + Q F+K R + + +L+A+E VD + +VD KAYD+V+W +
Sbjct: 546 LFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDISKAYDNVNWEF 605
Query: 465 LDSVMGRMSFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
L +++ + P+++ WI VC+S+A+ S+ NG F ++G+RQGDP+
Sbjct: 606 LINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPM 656
>At4g10830 putative protein
Length = 1294
Score = 211 bits (536), Expect = 1e-54
Identities = 159/523 (30%), Positives = 260/523 (49%), Gaps = 34/523 (6%)
Query: 10 GDFNAIRSREERRSVSVGQVASD---FSHFNSFIDNNVLVDLPLGGRNFTWFKGDGKSMS 66
GDFN I S E+ +G D F F + + L D+ G F+W G+ S +
Sbjct: 496 GDFNEILSNNEK----IGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWV-GERHSHT 550
Query: 67 R---LDRFLLSEDWCLVWPNC-LQIAQMRGLSDHCPLILSVAE-ENWGPRPSRMLKCWTD 121
LDR ++ + ++P L+ + G SDH PL LS+ + E RP R K +
Sbjct: 551 VKCCLDRAFINSEGAFLFPFAELEFLEFTG-SDHKPLFLSLEKTETRKMRPFRFDKRLLE 609
Query: 122 IPGYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLAT 181
+P ++ +V W ++G + L ++ + + ++ + H NL +I + + A
Sbjct: 610 VPHFKTYVKAGWNK-AINGQRKH-LPDQVRTCRQAMAK--LKHKSNLNSRIR-INQLQAA 664
Query: 182 LDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHSVLA 241
LD+ S+ T+ I + ++ R Q+SR QW++EGD N++FFH+
Sbjct: 665 LDKAMSSVNRTERRT--ISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTK 722
Query: 242 SRRRRNSLCTIV-VDGVVVEGVHPIREAVFCHFENHFRSV---NVERPSLTNLQF*SLSV 297
+R N L TI +G++ G + + H + F V N S+ + V
Sbjct: 723 TRFSVNRLVTIKDEEGMIYRG----DKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKPIV 778
Query: 298 AEGVG--LIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHR 355
E + L K S E+ A+ K+PGPDG+ F K W + ++ + V F R
Sbjct: 779 TEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFR 838
Query: 356 NGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDA 415
+ + IN T I +IPK+ NP+ L+D+RPI+L LYKI++K L RL+ + +++SD+
Sbjct: 839 TSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDS 898
Query: 416 QSAFVKNRQILDGILIANE---AVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRM 472
Q+AF+ R + D ++IA+E ++ +++ + + K D KAYD V+W +L++ M
Sbjct: 899 QAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLF 958
Query: 473 SFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
F W KWI V + SVLVNG P +RG+RQGDPL
Sbjct: 959 GFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPL 1001
>At2g01550 putative non-LTR retroelement reverse transcriptase
Length = 1449
Score = 209 bits (532), Expect = 3e-54
Identities = 156/529 (29%), Positives = 248/529 (46%), Gaps = 28/529 (5%)
Query: 1 LRGKNVCVCGDFNAIRSREER-RSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWF- 58
+R K + GDFN I +E R V S F S ++ DL G FTW
Sbjct: 547 IRDKPWIIFGDFNEILDMDEHSRMEDHPAVTSGMRDFQSLVNYCSFSDLASHGPLFTWCN 606
Query: 59 -KGDGKSMSRLDRFLLSEDWCLVWPNCLQIAQMRGLSDH--CPLILSV--AEENWGPRPS 113
+ + +LDR +++E W +V+P + + G SDH C + L++ + G +P
Sbjct: 607 KRDNDPIWKKLDRVMVNEAWKMVYPQSYNVFEAGGCSDHLRCRINLNMNSGAQVRGNKPF 666
Query: 114 RMLKCWTDIPGYRQFVSNKWKSFQ---VSGWGGYVLKEKFKLLKISLKEWHASHS*NLLG 170
+ + D+ ++ V N W+ + +S + +K K LK L+ NL+
Sbjct: 667 KFVNAVADMEEFKPLVENFWRETEPIHMSTSSLFRFTKKLKALKPKLRGLAKEKMGNLVK 726
Query: 171 KISDLKERLATLDEKGESMLLTDEECAEIHG---VSSDILSLSRLNTSICWQQSRIQWLR 227
+ + L + + EI V D ++ + Q S++ WL+
Sbjct: 727 RTREAYLSLCQAQQSNSQN--PSQRAMEIESEAYVRWD--RIASIEEKYLKQVSKLHWLK 782
Query: 228 EGDANSKFFHSVLASRRRRNSLCTIVV-DGVVVEGVHPIREAVFCHFE-------NHFRS 279
GD N+K FH +R +NS+ I DG I+ F+ N +
Sbjct: 783 VGDKNNKTFHRAATARAAQNSIREIQKEDGSTATTKDDIKNETERFFQEFLQLIPNDYEG 842
Query: 280 VNVERPSLTNLQF*SLSVAEGVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFW 339
+ VE+ LT+L S AE L S E++ A++ + KSPGPDG F K W
Sbjct: 843 ITVEK--LTSLLPYHCSPAEKDMLTASVSAKEIRGALFSMPNDKSPGPDGYTSEFYKRAW 900
Query: 340 LDLKDEIFRFVSEFHRNGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKL 399
+ E V F G L KG+N+T +ALIPK + + D+RPIS +YK+++K+
Sbjct: 901 DIIGAEFVLAVKSFFEKGFLPKGVNTTILALIPKKLEAKEMKDYRPISCCNVIYKVISKI 960
Query: 400 LANRLRVVIGSVISDAQSAFVKNRQILDGILIANEAVDEARK-LKKDLLLFKVDFEKAYD 458
+ANRL+ V+ + I+ QSAFVK+R +++ +L+A E V + K K+D KA+D
Sbjct: 961 IANRLKHVLPNFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISGRCAIKIDISKAFD 1020
Query: 459 SVDWGYLDSVMGRMSFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRR 507
SV W +L +V+ + FP + W+ +CV+TA+ SV VNG F R
Sbjct: 1021 SVQWSFLKNVLSALDFPPEFVHWVMLCVTTASFSVQVNGELAGYFQSSR 1069
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 208 bits (530), Expect = 5e-54
Identities = 153/519 (29%), Positives = 255/519 (48%), Gaps = 26/519 (5%)
Query: 10 GDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWFKGDGKSMSR-- 67
GDFN I S E+ + + + F +F + + + + D+ G F+W +
Sbjct: 516 GDFNEILSNAEKIGGPMREEWT-FRNFRNMVSHCDIEDMRSKGDRFSWVGERHTHTVKCC 574
Query: 68 LDRFLLSEDWCLVWPNC-LQIAQMRGLSDHCPLILSVAEENWGPRPSRMLKC---WTDIP 123
LDR ++ W +P ++ G SDH P+++ E PR S++ + DIP
Sbjct: 575 LDRVFINSAWTATFPYAEIEFLDFTG-SDHKPVLVHFNESF--PRRSKLFRFDNRLIDIP 631
Query: 124 GYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEW-HASHS*NLLGKISDLKERLATL 182
+++ V W++ + S + E+ + ++ HAS+ L +K+ ++L
Sbjct: 632 TFKRIVQTSWRTNRNSR--STPITERISSCRQAMARLKHASN----LNSEQRIKKLQSSL 685
Query: 183 DEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQ-SRIQWLREGDANSKFFHSVLA 241
+ ES D + + L+ + + I W+Q SR QW++EGD N+ +FH+
Sbjct: 686 NRAMESTRRVDRQLIP---QLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTK 742
Query: 242 SRRRRNSLCTIVVD-GVVVEGVHPIREAVFCHFENHFRSVNVERPSLTNLQF*S-LSVAE 299
+R +N + TI+ D G + G I F N F + ++ + F S ++
Sbjct: 743 TRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTV 802
Query: 300 GVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRNGKL 359
+ L K FS E+ A+ K+PGPDG+ F K W + ++ V +F +
Sbjct: 803 NLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFM 862
Query: 360 SKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAF 419
IN T I +IPK+ NP L+D+RPI+L LYK+++K L NRL+ + S++SD+Q+AF
Sbjct: 863 KPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAF 922
Query: 420 VKNRQILDGILIANEAVDE---ARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPV 476
+ R I D ++IA+E + +++ K + K D KAYD V+W +L++ M F
Sbjct: 923 IPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCN 982
Query: 477 LWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
W WI V + SVL+NGSP RG+RQGDPL
Sbjct: 983 KWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPL 1021
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 208 bits (529), Expect = 7e-54
Identities = 161/522 (30%), Positives = 251/522 (47%), Gaps = 36/522 (6%)
Query: 10 GDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWFKGDGKS---MS 66
GDFN I E++ + + F F SF+ N L D+ G + +W +G S S
Sbjct: 79 GDFNDILDNSEKQGGPL-RWEGFFLAFRSFVSQNGLWDINHTGNSLSW-RGTRYSHFIKS 136
Query: 67 RLDRFLLSEDWCLVWP-NCLQIAQMRGLSDHCPLILSV-AEENWGPRPSRMLKCWTDIPG 124
RLDR L + W ++P + + + G SDH PL+ A +P R + +
Sbjct: 137 RLDRALGNCSWSELFPMSKCEYLRFEG-SDHRPLVTYFGAPPLKRSKPFRFDRRLREKEE 195
Query: 125 YRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLATLDE 184
R V W+ + + K + S+ +W + N I ++ L
Sbjct: 196 IRALVKEVWELARQDS-----VLYKISRCRQSIIKWTKEQNSNSAKAIKKAQQAL----- 245
Query: 185 KGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQ-SRIQWLREGDANSKFFHSVLASR 243
ES L D + G + L + + W+Q SR+QWL GD N +FH+ +R
Sbjct: 246 --ESALSADIPDPSLIGSITQELEAAYRQEELFWKQWSRVQWLNSGDRNKGYFHATTRTR 303
Query: 244 RRRNSLCTIVVDGVVVE--GVHPIREAVFCHFENHFRSVN-----VERPSLTNLQF*SLS 296
R N+L +++ DG E I + +F+N F + N V + +L+ + +S
Sbjct: 304 RMLNNL-SVIEDGSGQEFHEEEQIASTISSYFQNIFTTSNNSDLQVVQEALSPI----IS 358
Query: 297 VAEGVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRN 356
LIK S+ E+K A++ + K+PGPDG + F +W ++ ++ R + F +
Sbjct: 359 SHCNEELIKISSLLEIKEALFSISADKAPGPDGFSASFFHAYWDIIEADVSRDIRSFFVD 418
Query: 357 GKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQ 416
LS +N T + LIPK+ P++++D+RPI+L YKI+AK+L RL+ + +IS Q
Sbjct: 419 SCLSPRLNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQ 478
Query: 417 SAFVKNRQILDGILIANEAVDEAR---KLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMS 473
SAFV R I D +LI +E + R K + K D KAYD + W +L V+ R+
Sbjct: 479 SAFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLG 538
Query: 474 FPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
F W +W+ CV T + S L+NGSP RGLRQGDPL
Sbjct: 539 FHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPL 580
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 207 bits (527), Expect = 1e-53
Identities = 153/519 (29%), Positives = 254/519 (48%), Gaps = 26/519 (5%)
Query: 10 GDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWFKGDGKSMSR-- 67
GDFN I S E+ + + + F +F + + + + D+ G F+W +
Sbjct: 290 GDFNEILSNAEKIGGPMREEWT-FRNFRNMVSHCDIEDMRSKGDRFSWVGERHTHTVKCC 348
Query: 68 LDRFLLSEDWCLVWPNC-LQIAQMRGLSDHCPLILSVAEENWGPRPSRMLKC---WTDIP 123
LDR ++ W +P + G SDH P+++ E PR S++ + DIP
Sbjct: 349 LDRVFINSAWTATFPYAETEFLDFTG-SDHKPVLVHFNESF--PRRSKLFRFDNRLIDIP 405
Query: 124 GYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEW-HASHS*NLLGKISDLKERLATL 182
+++ V W++ + S + E+ + ++ HAS+ L +K+ ++L
Sbjct: 406 TFKRIVQTSWRTNRNSR--STPITERISSCRQAMARLKHASN----LNSEQRIKKLQSSL 459
Query: 183 DEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQ-SRIQWLREGDANSKFFHSVLA 241
+ ES D + + L+ + + I W+Q SR QW++EGD N+ +FH+
Sbjct: 460 NRAMESTRRVDRQLIP---QLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTK 516
Query: 242 SRRRRNSLCTIVVD-GVVVEGVHPIREAVFCHFENHFRSVNVERPSLTNLQF*S-LSVAE 299
+R +N + TI+ D G + G I F N F + ++ + F S ++
Sbjct: 517 TRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTV 576
Query: 300 GVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRNGKL 359
+ L K FS E+ A+ K+PGPDG+ F K W + ++ V +F +
Sbjct: 577 NLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFM 636
Query: 360 SKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAF 419
IN T I +IPK+ NP L+D+RPI+L LYK+++K L NRL+ + S++SD+Q+AF
Sbjct: 637 KPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAF 696
Query: 420 VKNRQILDGILIANEAVDE---ARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPV 476
+ R I D ++IA+E + +++ K + K D KAYD V+W +L++ M F
Sbjct: 697 IPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCN 756
Query: 477 LWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
W WI V + SVL+NGSP RG+RQGDPL
Sbjct: 757 KWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPL 795
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 205 bits (521), Expect = 6e-53
Identities = 154/522 (29%), Positives = 252/522 (47%), Gaps = 29/522 (5%)
Query: 8 VCGDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWF-KGDGKSM- 65
+CGDFN I + E++ + S +F + I+ + DL G ++W K +++
Sbjct: 495 MCGDFNEILNLNEKKGGRRRSIGS-LQNFTNMINCCNMKDLKSKGNPYSWVGKRQNETIE 553
Query: 66 SRLDRFLLSEDWCLVWPNC-LQIAQMRGLSDHCPLILSVAEENWGPRPS-RMLKCWTDIP 123
S LDR ++ DW +P + + G SDH P+I+ +AEE R R +
Sbjct: 554 SCLDRVFINSDWQASFPAFETEFLPIAG-SDHAPVIIDIAEEVCTKRGQFRYDRRHFQFE 612
Query: 124 GYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLATLD 183
+ V W + GGY EK + L +W N KI LK R+ D
Sbjct: 613 DFVDSVQRGWNRGRSDSHGGYY--EKLHCCRQELAKWKRRTKTNTAEKIETLKYRV---D 667
Query: 184 EKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQ-QSRIQWLREGDANSKFFHSVLAS 242
L + + L+ + + + W +SR +W+ GD N+ FF++
Sbjct: 668 AAERDHTLPHQTILRLR----QDLNQAYRDEELYWHLKSRNRWMLLGDRNTMFFYASTKL 723
Query: 243 RRRRNSLCTIVVDGVVVEGVHPIREAVFCHF-ENHFRSVNVERPSLTNLQF*S---LSVA 298
R+ RN + I +G+ R+ EN+F + + + S V
Sbjct: 724 RKSRNRIKAITD----AQGIENFRDDTIGKVAENYFADLFTTTQTSDWEEIISGIAPKVT 779
Query: 299 EGVG--LIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRN 356
E + L++ + EV+ AV+ + ++PG DG F W + +++ V F +
Sbjct: 780 EQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWDLIGNDVCLMVRHFFES 839
Query: 357 GKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQ 416
+ IN T I LIPK+ +P+ ++D+RPISL + YKI++K+L RL+ +G VISD+Q
Sbjct: 840 DVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCLGDVISDSQ 899
Query: 417 SAFVKNRQILDGILIANE---AVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMS 473
+AFV + I D +L+A+E ++ R+ + + K D KAYD V+W +L+ VM ++
Sbjct: 900 AAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLG 959
Query: 474 FPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
F W KWI CV++ + VL+NGSP + RG+RQGDPL
Sbjct: 960 FAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPL 1001
>At1g25430 hypothetical protein
Length = 1213
Score = 204 bits (520), Expect = 7e-53
Identities = 148/518 (28%), Positives = 246/518 (46%), Gaps = 12/518 (2%)
Query: 8 VCGDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWFKGDGKS--M 65
V GDFN + + +E + V + F + L DL G FTW+ +
Sbjct: 141 VLGDFNQVLNPQEHSNPVSLNVDINMRDFRDCLLAAELSDLRYKGNTFTWWNKSHTTPVA 200
Query: 66 SRLDRFLLSEDWCLVWPNCLQIAQMRGLSDH--CPLILSVAEENWGPRPSRMLKCWTDIP 123
++DR L+++ W ++P+ L I SDH C ++L RP +
Sbjct: 201 KKIDRILVNDSWNALFPSSLGIFGSLDFSDHVSCGVVLEETSIK-AKRPFKFFNYLLKNL 259
Query: 124 GYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLATLD 183
+ V + W + V G + + +K K LK +K++ + L + + + L
Sbjct: 260 DFLNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKDFSRLNYSELEKRTKEAHDFLIGCQ 319
Query: 184 EKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHSVLASR 243
++ + E+ + L+ S Q+SRI W EGD N+K+FH + +R
Sbjct: 320 DRTLADPTPINASFELEAERKWHI-LTAAEESFFRQKSRISWFAEGDGNTKYFHRMADAR 378
Query: 244 RRRNSLCTIVV-DGVVVEGVHPIREAVFCHFEN----HFRSVNVERPSLTNLQF*SLSVA 298
NS+ + +G +V+ I + +F + +E+ + L S A
Sbjct: 379 NSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLGDEVDPYLMEQNDMNLLLSYRCSPA 438
Query: 299 EGVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRNGK 358
+ L FS ++++AA++ KS GPDG F + W + E+ + EF +G
Sbjct: 439 QVCELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGC 498
Query: 359 LSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSA 418
L K N+T I LIPK+ NP +DFRPIS + +LYK++A+LL +RL+ ++ VIS AQSA
Sbjct: 499 LLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSA 558
Query: 419 FVKNRQILDGILIANEAVDEARKLK-KDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVL 477
F+ R + + +L+A + V + KVD +KA+DSV W ++ + + ++ P
Sbjct: 559 FLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEK 618
Query: 478 WRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
+ WI C+ST T +V +NG F +GLRQGDPL
Sbjct: 619 FINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPL 656
>At2g28980 putative non-LTR retroelement reverse transcriptase
Length = 1529
Score = 204 bits (519), Expect = 9e-53
Identities = 147/441 (33%), Positives = 214/441 (48%), Gaps = 28/441 (6%)
Query: 90 MRGLSDHCPLILSVAEENWGPRPSRMLKCWTDIPGYRQFVSNKWKS---FQVSGWGGYVL 146
MR + L+L A G +P + + T +P + V + W S VS Y
Sbjct: 526 MRDFQEIGRLMLEAAATG-GRKPFKFVNVLTKLPQFLPVVESHWASSAPLYVSTSALYRF 584
Query: 147 KEKFKLLKISLKEWHASHS*NLLGKISDLKERLAT----LDEKGESMLL--TDEECAEIH 200
+K K LK L+E K+ DL +R L EK + L + E AE
Sbjct: 585 SKKLKTLKPHLRELGKE-------KLGDLPKRTREAHILLCEKQATTLANPSQETIAEEL 637
Query: 201 GVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHSVLASRRRRNSLCTIVVDGVVV- 259
+D LS L Q+S++ W+ GD N+ +FH R+ RNS+ I
Sbjct: 638 KAYTDWTHLSELEEGFLKQKSKLHWMNVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETL 697
Query: 260 ---EGVHPIREAVFCHFENH----FRSVNVERPSLTNLQF*SLSVAEGVGLIKPFSIDEV 312
E + E F F N F ++VE L NL SV + L + + +E+
Sbjct: 698 QTSEEIKGEAERFFNEFLNRQSGDFHGISVE--DLRNLMSYRCSVTDQNILTREVTGEEI 755
Query: 313 KAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRNGKLSKGINSTFIALIP 372
+ ++ + KSPGPDG F K W + + F G L KG+N+T +ALIP
Sbjct: 756 QKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIP 815
Query: 373 KVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKNRQILDGILIA 432
K D + D+RPIS LYK+++K+LANRL++++ S I QSAFVK R +++ +L+A
Sbjct: 816 KKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLA 875
Query: 433 NEAV-DEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWRKWIKVCVSTATA 491
E V D ++ K+D KA+DSV W +L + + ++FP +R WIK+C+STAT
Sbjct: 876 TELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATF 935
Query: 492 SVLVNGSPTDEFPFRRGLRQG 512
SV VNG F RGLRQG
Sbjct: 936 SVQVNGELAGFFGSSRGLRQG 956
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 203 bits (517), Expect = 2e-52
Identities = 149/511 (29%), Positives = 237/511 (46%), Gaps = 20/511 (3%)
Query: 13 NAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTW--FKGDGKSMSRLDR 70
N I E+R S F F SFI N L DL G F+W + D RLDR
Sbjct: 36 NEILDNSEKRGGPPRDQGS-FIDFRSFISKNGLWDLKYSGNPFSWRGMRYDWFVRQRLDR 94
Query: 71 FLLSEDWCLVWPNCLQIAQMRGLSDHCPLILSVAEENWGPRPS-RMLKCWTDIPGYRQFV 129
+ + W +P+ SDH PL++ V E R R D +
Sbjct: 95 AMSNNSWLESFPSGRSEYLRFEGSDHRPLVVFVDEARVKRRGQFRFDNRLRDNDVVNALI 154
Query: 130 SNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLATLDEKGESM 189
W + G + K + + W + N I ++ L E++
Sbjct: 155 QETWTNA-----GDASVLTKMNQCRREIINWTRLQNLNSAELIEKTQKALE------EAL 203
Query: 190 LLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHSVLASRRRRNSL 249
I +++ + +L Q+SR+ WL GD N+ +FH+V +RR +N L
Sbjct: 204 TADPPNPTTIGALTATLEHAYKLEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQNRL 263
Query: 250 CTIV-VDGVVVEGVHPIREAVFCHFENHFRSVNVERPSLTNLQF*SL-SVAEGVGLIKPF 307
+ ++GV H I + + +F+ F S + S+ + + S + L +
Sbjct: 264 TVMEDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRIP 323
Query: 308 SIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRNGKLSKGINSTF 367
+ +EVK AV+ ++ K+PGPDG GF +W + ++ R + F + + +N T
Sbjct: 324 NDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETH 383
Query: 368 IALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKNRQILD 427
I LIPK P+++ D+RPI+L YKI+AK++ R+++++ +IS+ QSAFV R I D
Sbjct: 384 IRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVISD 443
Query: 428 GILIANEAVDEAR---KLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWRKWIKV 484
+LI +E + R K + K D KAYD V+W +L V+ R F +W W+
Sbjct: 444 NVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLE 503
Query: 485 CVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
CV++ + S L+NG+P + RGLRQGDPL
Sbjct: 504 CVTSVSYSFLINGTPQGKVVPTRGLRQGDPL 534
>At4g26360 putative protein
Length = 1141
Score = 203 bits (516), Expect = 2e-52
Identities = 157/520 (30%), Positives = 246/520 (47%), Gaps = 34/520 (6%)
Query: 10 GDFNAI-RSREERRSVSVGQVASDFSHFNSFIDNNVLVDLPLGGRNFTWFKGDGKSMSR- 67
GDFN + E R VS+ V F + + L DL G +FTW+ KS +R
Sbjct: 135 GDFNQVLHPHEHSRHVSLN-VDRRIRDFRECLLDAELSDLVYKGSSFTWWN---KSKTRP 190
Query: 68 ----LDRFLLSEDWCLVWPNCLQIAQMRGLSDH--CPLILSVAEENWGPRPSRMLKCWTD 121
+DR L++E W ++P+ + SDH C ++L + + RP +
Sbjct: 191 VAKKIDRILVNESWSNLFPSSFGLFGPPDFSDHASCGVVLEL-DPIKAKRPFKFFNFLLK 249
Query: 122 IPGYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLAT 181
P + V + W S V G + + +K K LK +K++ + NL + + E L +
Sbjct: 250 NPEFLNLVWDVWYSTNVVGSSMFRVSKKLKALKKPIKDFSRLNYSNLEKRTEEAHETLLS 309
Query: 182 LDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLREGDANSKFFHSVLA 241
+ E+ + L+ S Q+SR+ W EGD N+++FH +
Sbjct: 310 FQNLTLDNPSLENAAHELEAQRKWQI-LATAEESFFRQRSRVTWFAEGDGNTRYFHRMAD 368
Query: 242 SRRRRNSLCTIVVD-GVVVEGVHPIREAVFCHFENHFRSVN----VERPSLTNLQF*SLS 296
SR+ N++ T+V D G ++ I + +FEN N +E+ + L
Sbjct: 369 SRKSVNTITTLVDDSGTQIDSQQGIADHCALYFENLLSDDNDPYSLEQDDMNLLLTYRCP 428
Query: 297 VAEGVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRN 356
++ L FS +++KAA + S K+ GPDG + V EF +
Sbjct: 429 YSQVADLEAMFSDEDIKAAFFGLPSNKACGPDGF--------------PVTAAVREFFIS 474
Query: 357 GKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQ 416
G L K N+T I LIPK N +DFRPIS + +LYK++A+LL +RL+ ++ VIS +Q
Sbjct: 475 GNLLKQWNATTIVLIPKFPNASCTSDFRPISCMNTLYKVIARLLTDRLQKLLSCVISPSQ 534
Query: 417 SAFVKNRQILDGILIANEAVDEARKLKKDLL-LFKVDFEKAYDSVDWGYLDSVMGRMSFP 475
SAF+ R + + +L+A E V L + KVD KA+DSV W ++ + + + P
Sbjct: 535 SAFLPGRLLAENVLLATEMVHGYNWRNISLRGMLKVDLRKAFDSVRWEFIIAALLALGVP 594
Query: 476 VLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
+ WI C+ST T +V VNG F +GLRQGDPL
Sbjct: 595 TKFINWIHQCISTPTFTVSVNGCCGGFFKSAKGLRQGDPL 634
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 201 bits (512), Expect = 6e-52
Identities = 138/431 (32%), Positives = 213/431 (49%), Gaps = 20/431 (4%)
Query: 94 SDHCPLILSVAEE-NWGPRPSRMLKCWTDIPGYRQFVSNKWKSFQVSGWGGYVLKEKFKL 152
SDH P+I ++A++ G + R K W G + +S W G +V EK
Sbjct: 4 SDHSPVIATIADKIPRGKQNFRFDKRWIGKDGLLEAISQGWNLDSGFREGQFV--EKLTN 61
Query: 153 LKISLKEWHASHS*NLLGKISDLKERLATLDEKGESMLLTDEECAEIHGVSSDILSLSRL 212
+ ++ +W S I DLK L D EI ++ + R
Sbjct: 62 CRRAISKWRKSLIPFGRQTIEDLKAELDVAQRDD------DRSREEITELTLRLKEAYRD 115
Query: 213 NTSICWQQSRIQWLREGDANSKFFHSVLASRRRRNSLCTIVVD-GVVVEGVHPIREAVFC 271
+Q+SR W++ GD NSKFFH++ RR RN + + + G+ I+
Sbjct: 116 EEQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVS 175
Query: 272 HFENHFRSVN--VERPSLTNLQF*SLSVAEGVG--LIKPFSIDEVKAAVWDCDSYKSPGP 327
+F+N F + N V +L +Q + + + + L + EV+AA++ K+PGP
Sbjct: 176 YFQNLFTTANPQVFDEALGEVQ---VLITDRINDLLTADATECEVRAALFMIHPEKAPGP 232
Query: 328 DGINFGFIKEFWLDLKDEIFRFVSEFHRNGKLSKGINSTFIALIPKVDNPQRLNDFRPIS 387
DG+ F ++ W +K ++ V+ F + G K +N+T I LIPK + P R+ + RPIS
Sbjct: 233 DGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPIS 292
Query: 388 LVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKNRQILDGILIANEAVDEAR---KLKK 444
L YK+++K+L RL+ V+ ++IS+ QSAFV R I D ILIA E R K
Sbjct: 293 LCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKD 352
Query: 445 DLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWRKWIKVCVSTATASVLVNGSPTDEFP 504
+ K D KAYD V+W ++++++ +M F W WI C++T VL+NG P
Sbjct: 353 KFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLII 412
Query: 505 FRRGLRQGDPL 515
RGLRQGDPL
Sbjct: 413 PERGLRQGDPL 423
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 197 bits (501), Expect = 1e-50
Identities = 152/481 (31%), Positives = 224/481 (45%), Gaps = 48/481 (9%)
Query: 52 GRNFTWFKGDGKSM---SRLDRFLLSEDWCLVWPNCLQIAQMRGLSDHCPLILSVAEENW 108
G FTW +G +S RLDR L L W L CP A
Sbjct: 5 GNRFTWRRGLVESTFVAKRLDRVLFCAHARLKWQEALL----------CPAQNVDARR-- 52
Query: 109 GPRPSRMLKCWTDIPGYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLKEWHASHS*NL 168
RP R W G+++ ++ W + G L+ LK+W+ +
Sbjct: 53 --RPFRFEAAWLSHEGFKELLTASWDT-------GLSTPVALNRLRWQLKKWNKE----V 99
Query: 169 LGKISDLKERLATLDEKGESMLL----TDEECAEIHGVSSDILSLSRLNTSICWQQSRIQ 224
G I KE++ + D K LL TD+ + + + L ++ +Q+SR +
Sbjct: 100 FGNIHVRKEKVVS-DLKAVQDLLEVVQTDDLLMKEDTLLKEFDVLLHQEETLWFQKSREK 158
Query: 225 WLREGDANSKFFHSVLASRRRRNSLCTIV--VDGVVVEGVHPIREAVFCHFENHFRS--- 279
L GD N+ FFH+ RRRRN + + D V E +EA+ +++R
Sbjct: 159 LLALGDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTE-----KEALEKLAMDYYRKLYS 213
Query: 280 ---VNVERPSLTNLQF*SLSVAEGVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIK 336
V+V R +L F L+ E L +PF+ DEV AV +K+PGPDG F +
Sbjct: 214 LEDVSVVRGTLPTEGFPRLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQ 273
Query: 337 EFWLDLKDEIFRFVSEFHRNGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKIL 396
+ W + + + +FV EF +G L K N + L+ KV P+R+ FRP+SL L+KI+
Sbjct: 274 QCWETVGESVSKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKII 333
Query: 397 AKLLANRLRVVIGSVISDAQSAFVKNRQILDGILIANEAVDEARKLK--KDLLLFKVDFE 454
K++ RL+ VI +I AQ++F+ R D I++ EAV R+ K K +L K+D E
Sbjct: 334 TKMMVIRLKNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLE 393
Query: 455 KAYDSVDWGYLDSVMGRMSFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDP 514
KAYD + W +L + W K I CV+ S+L NG TD F RGLRQGDP
Sbjct: 394 KAYDRIRWDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDP 453
Query: 515 L 515
+
Sbjct: 454 I 454
>At2g11240 pseudogene
Length = 1044
Score = 186 bits (472), Expect = 3e-47
Identities = 142/486 (29%), Positives = 226/486 (46%), Gaps = 41/486 (8%)
Query: 45 LVDLPLGGRNFTWF--KGDGKSMSRLDRFLLSEDWCLVWPNCLQIAQMRGLSDHCPLI-- 100
L DL G +W + D RLDR L + W +P I SDH PL+
Sbjct: 6 LYDLRHSGNFLSWRGKRHDHVVHCRLDRALSNGAWAEDYPASRCIYLCFEGSDHRPLLTH 65
Query: 101 --LSVAEENWGPRPSRMLKCWTDIPGYRQFVSNKWKSFQVSGWGGYVLKEKFKLLKISLK 158
LS ++ R R LK ++ V W + +++EK ++ +
Sbjct: 66 FDLSKKKKKGVFRYDRRLKNNDEVTA---LVQEAWNLYDTD-----IVEEKISRCRLEIV 117
Query: 159 EWHASHS*NLLGKISDLKERLATLDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICW 218
+W + + I + +++L E+M D + +++++L +
Sbjct: 118 KWSRAKQQSSQKLIEENRQKLE------EAMSSQDHNQELLSTINTNLLLAYKAEEEYWK 171
Query: 219 QQSRIQWLREGDANSKFFHSVLASRRRRNSLCTIVV-DGVVVEGVHPIREAVFCHFENHF 277
Q+SR WL GD NS +FH++ R N I DGV I + +F+ F
Sbjct: 172 QRSRQLWLALGDKNSGYFHAITRGRTVINKFSVIEKEDGVPEYEEAGILNVISEYFQKLF 231
Query: 278 RSVNVERPSLTNLQF*SLSVAEGVGLIKPF-----SIDEVKAAVWDCDSYKSPGPDGINF 332
+ R + ++ E IKPF + +E+K+A + + K+PGPDG +
Sbjct: 232 SANEGARAA---------TIKEA---IKPFISPEQNPEEIKSACFSIHADKAPGPDGFSA 279
Query: 333 GFIKEFWLDLKDEIFRFVSEFHRNGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSL 392
F + W+ + I + F + L IN T I LIPK+ + +R+ D+RPI+L
Sbjct: 280 SFFQSNWMTVGPNIVLEIQSFFSSSTLQPTINKTHITLIPKIQSLKRMVDYRPIALCTVF 339
Query: 393 YKILAKLLANRLRVVIGSVISDAQSAFVKNRQILDGILIANEAVDEARKL---KKDLLLF 449
YKI++KLL+ RL+ ++ +IS+ QSAFV R D +LI +EA+ + L K+ +
Sbjct: 340 YKIISKLLSRRLQPILQEIISENQSAFVPKRASNDNVLITHEALHYLKSLGAEKRCFMAV 399
Query: 450 KVDFEKAYDSVDWGYLDSVMGRMSFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGL 509
K + KAYD ++W ++ VM M F W WI C++T + S L+NGS RGL
Sbjct: 400 KTNMSKAYDRIEWDFIKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGL 459
Query: 510 RQGDPL 515
RQGDPL
Sbjct: 460 RQGDPL 465
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 186 bits (471), Expect = 3e-47
Identities = 119/371 (32%), Positives = 188/371 (50%), Gaps = 23/371 (6%)
Query: 156 SLKEWHASHS*NLLGKISDL-----KERLATLDEKGESMLLTDEECAEIHGVSSDILSLS 210
++ +W + N +I+ L KE+ AT + LL D+L +
Sbjct: 10 AISQWKRENDFNAKSRITKLRRELDKEKSATFPSWTQISLL------------QDVLGDA 57
Query: 211 RLNTSICWQ-QSRIQWLREGDANSKFFHSVLASRRRRNSLCTIVVDGVVVEGVHPIREAV 269
W+ +SR +W+ GD NSKFF + + + R NSL +V + + V+ + +
Sbjct: 58 YREEEDFWRLKSRDKWMVGGDKNSKFFQATVKANRVSNSLRFLVDENGNEQTVNREKGKI 117
Query: 270 FCHFENHFRSVNVERPSLTNLQF*SLSVAEGVG--LIKPFSIDEVKAAVWDCDSYKSPGP 327
F S + + L+ + V E + L K + E+ AV+ ++ +PGP
Sbjct: 118 AVTFFEDLFSSSYPSSMDSVLEGFNKRVTEDMNQDLTKKVNEQEIYKAVFSINAESAPGP 177
Query: 328 DGINFGFIKEFWLDLKDEIFRFVSEFHRNGKLSKGINSTFIALIPKVDNPQRLNDFRPIS 387
DG F + W +K++I + F + G L + N T + LIPK+ P R+ D RPIS
Sbjct: 178 DGFTALFFQRQWPLVKNQIISDIELFFQTGILPEDWNHTHLCLIPKITKPARMADIRPIS 237
Query: 388 LVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKNRQILDGILIANEAVDEAR---KLKK 444
L +YKI++K+L+ RL+ + ++S QSAFV R + D I++A+E V R K+ K
Sbjct: 238 LCSVMYKIISKILSARLKKYLPVIVSPTQSAFVAERLVSDNIILAHEIVHNLRTNEKISK 297
Query: 445 DLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWRKWIKVCVSTATASVLVNGSPTDEFP 504
D ++FK D KAYD V+W +L ++ + F W W+ CVS+ + SVL+NG P
Sbjct: 298 DFMVFKTDMSKAYDRVEWPFLKGILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHIT 357
Query: 505 FRRGLRQGDPL 515
RGLRQGDPL
Sbjct: 358 PHRGLRQGDPL 368
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.324 0.140 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,734,185
Number of Sequences: 26719
Number of extensions: 509343
Number of successful extensions: 1655
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1441
Number of HSP's gapped (non-prelim): 103
length of query: 515
length of database: 11,318,596
effective HSP length: 104
effective length of query: 411
effective length of database: 8,539,820
effective search space: 3509866020
effective search space used: 3509866020
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Medicago: description of AC146758.6