BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146752.14 - phase: 2 /pseudo
(1086 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g10160 putative reverse transcriptase 176 5e-44
At4g10830 putative protein 152 1e-36
At2g01840 putative non-LTR retroelement reverse transcriptase 150 3e-36
At2g16680 putative non-LTR retroelement reverse transcriptase 148 2e-35
At1g47910 reverse transcriptase, putative 146 5e-35
At2g31520 putative non-LTR retroelement reverse transcriptase 145 9e-35
At3g25485 unknown protein 145 1e-34
At2g25550 putative non-LTR retroelement reverse transcriptase 145 1e-34
At1g24640 hypothetical protein 144 4e-34
At3g45550 putative protein 143 5e-34
At2g41580 putative non-LTR retroelement reverse transcriptase 142 1e-33
At2g17910 putative non-LTR retroelement reverse transcriptase 142 1e-33
At1g23990 reverse transcriptase, putative 140 4e-33
At4g26360 putative protein 138 1e-32
At2g45230 putative non-LTR retroelement reverse transcriptase 135 1e-31
At1g25430 hypothetical protein 133 5e-31
At3g44650 putative protein 132 8e-31
At4g12180 putative reverse transcriptase 132 1e-30
At2g05200 putative non-LTR retroelement reverse transcriptase 132 1e-30
At4g09710 RNA-directed DNA polymerase -like protein 130 3e-30
>At1g10160 putative reverse transcriptase
Length = 1118
Score = 176 bits (447), Expect = 5e-44
Identities = 145/564 (25%), Positives = 258/564 (45%), Gaps = 49/564 (8%)
Query: 531 MVVGSVVFASQSAFIKGRQILDGILIANELVDDAKRNNKELL-MFKVDFEKAYDSVDWRY 589
+ + V A+Q FIKGR + + +L+A+ELVD+ + + + +VD KAYD+V+W +
Sbjct: 546 LFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDISKAYDNVNWEF 605
Query: 590 LDEVMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAA 649
L ++ ++ P ++ WI C+++A+ S+ NG F ++G+RQGDP+S LF+L
Sbjct: 606 LINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPMSSHLFVLVM 665
Query: 650 EGLNVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLFE 709
+ L+ + NGLF + P+ ++HL FADD L+ + +++ + T+L F
Sbjct: 666 DVLSKSLDLGALNGLFNLHP-NCLAPI-ITHLSFADDVLVFSDGAASSIAGILTILDDFR 723
Query: 710 DVSGLKVNFHKSMFFGVNINESWLHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLHFWHPL 769
SGL +N K+ N + A + HG +P YLG+P+ + + PL
Sbjct: 724 QGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKMRRQDYQPL 783
Query: 770 VERIRRRLSGVLEDRESLWNVVLCAKYGEVGGRVQFSEGVGPIWWRQLNQIRCGVGLAEN 829
V+RI R + W A++ GR+Q + WR+L ++R
Sbjct: 784 VDRINSRFTS--------WT----ARHLSFAGRLQLLNWI----WRKLCKLR-------- 819
Query: 830 AWLVDNIVRKVGDGSTTLFWEDPWLLNVPLAVSFSRLFELAENKGVSVREMFLLGWGADG 889
+ I+ +VG G T FW D W + P L L G + + L D
Sbjct: 820 PFARPFIICEVGSGVTASFWHDNWTDHGP-------LLHLTGPAGPLLAGLPLNSVVRDA 872
Query: 890 ---GAWRWRRRLFAWEEELVEECVARLSNFVLQADLSDRWVWRL--HS-SQLYTVQSAYS 943
WR + + V + ++ D ++W++ H+ S ++ +S
Sbjct: 873 LRDDTWRISSSRSRNPVITLLQRVLPSAASLIDCPHDDTYLWKIGHHAPSNRFSTADTWS 932
Query: 944 YLTAVDSNITAEFDRFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNV-LEATNVSSGA 1002
YL S+ + + + +W K K W + NRL T+D LR+ + T V
Sbjct: 933 YLQ--PSSTSVLWHKAVWFKDHVPKQAFICWVVAHNRLHTRDRLRRWGFSIPPTCVLCND 990
Query: 1003 LCGKEEERDHLFFQCDYYGRLWLLISNWLGFVTVFHDNLYTHANQFCALGGFSKNYMKAF 1062
L +E R+HLFF+C + +W S ++ + + + H + +N
Sbjct: 991 L---DESREHLFFRCQFSSEIW---SFFMRALNLNPPPQFMHCLLWTLTASRDRNITLIT 1044
Query: 1063 TIIWISVLFTIWKDRNRRIFQNQI 1086
+++ + ++ IW++RN RI N +
Sbjct: 1045 KLLFHASVYFIWRERNLRIHSNSV 1068
>At4g10830 putative protein
Length = 1294
Score = 152 bits (384), Expect = 1e-36
Identities = 90/248 (36%), Positives = 138/248 (55%), Gaps = 5/248 (2%)
Query: 535 SVVFASQSAFIKGRQILDGILIANELVDDAK---RNNKELLMFKVDFEKAYDSVDWRYLD 591
++V SQ+AFI GR + D ++IA+E++ K R ++ + K D KAYD V+W +L+
Sbjct: 893 AIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLE 952
Query: 592 EVMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAAEG 651
M F W WIM V + SVLVNG P +RG+RQGDPLSP+LF+L A+
Sbjct: 953 TTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADI 1012
Query: 652 LNVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLFEDV 711
LN ++ + G +G VP V+HLQFADD+L + N +A+K V ++E
Sbjct: 1013 LNHLIKNRVAEGDIRGIRIGNGVP-GVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYY 1071
Query: 712 SGLKVNFHKSMF-FGVNINESWLHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLHFWHPLV 770
SG K+N KSM FG ++ + + ++ + YLGLP +K ++ ++
Sbjct: 1072 SGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYII 1131
Query: 771 ERIRRRLS 778
ER+++R S
Sbjct: 1132 ERVKKRTS 1139
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 150 bits (380), Expect = 3e-36
Identities = 90/254 (35%), Positives = 137/254 (53%), Gaps = 11/254 (4%)
Query: 533 VGSVVFASQSAFIKGRQILDGILIANELVDDAKRNNK---ELLMFKVDFEKAYDSVDWRY 589
+G V+ SQ+AF+ G+ I D +L+A+EL+ K + + K D KAYD V+W +
Sbjct: 891 LGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNF 950
Query: 590 LDEVMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAA 649
L++VM ++ F W WIM CVT+ + VL+NG P + RG+RQGDPLSP+LFL A
Sbjct: 951 LEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCA 1010
Query: 650 EGLNVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLFE 709
E L+ M+ N + + +++SHL FADD+L S N+ + + +E
Sbjct: 1011 EVLSNMLRKAEVNKQIHGMKITKDC-LAISHLLFADDSLFFCRASNQNIEQLALIFKKYE 1069
Query: 710 DVSGLKVNFHK-SMFFGVNI---NESWLHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLHF 765
+ SG K+N+ K S+ FG I LH + + R G YLGLP RK+
Sbjct: 1070 EASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGG---KYLGLPEQLGRRKVEL 1126
Query: 766 WHPLVERIRRRLSG 779
+ +V +++ R G
Sbjct: 1127 FEYIVTKVKERTEG 1140
Score = 71.2 bits (173), Expect = 3e-12
Identities = 63/270 (23%), Positives = 107/270 (39%), Gaps = 55/270 (20%)
Query: 839 KVGDGSTTLFWEDPWLLNVPLAVSFSRLFELAENKGVSVREMFLLGWGADGGAWRWRRRL 898
++GDG TT WEDPWL +P + + + + + V ++ WR
Sbjct: 1269 RLGDGQTTKIWEDPWLPTLPPRPARGPILD----EDMKVADL-------------WRENK 1311
Query: 899 FAWEEELVEECV----------ARLSNFVLQADLSDRWVWRLHSSQLYTVQSAYSYLTAV 948
W+ + E + LSN+ + D + W + YTV+S Y T V
Sbjct: 1312 REWDPVIFEGVLNPEDQQLAKSLYLSNYAAR----DSYKWAYTRNTQYTVRSGYWVATHV 1367
Query: 949 DSNITAE-----------FDRFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNVLEATN 997
N+T E + +W + K+ F+WR L+T LR RN+ +
Sbjct: 1368 --NLTEEEIINPLEGDVPLKQEIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNI--PAD 1423
Query: 998 VSSGALCGKEEERDHLFFQCDYYGRLWLLI----SNWLGFVTVFHDNLYTHANQFCALGG 1053
+ C +E +H+ F C Y +W SN L F +N+ + G
Sbjct: 1424 PTCQRCCNADETINHIIFTCSYAQVVWRSANFSGSNRLCFTDNLEENI-----RLILQGK 1478
Query: 1054 FSKNYMKAFTIIWISVLFTIWKDRNRRIFQ 1083
++N ++ +++ +WK RN +FQ
Sbjct: 1479 KNQNLPILNGLMPFWIMWRLWKSRNEYLFQ 1508
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 148 bits (373), Expect = 2e-35
Identities = 95/252 (37%), Positives = 136/252 (53%), Gaps = 11/252 (4%)
Query: 535 SVVFASQSAFIKGRQILDGILIANELVDDAKRNNK---ELLMFKVDFEKAYDSVDWRYLD 591
S+V SQSAF R I D ILIA+E+V + N+K E ++FK D KAYD V+W +L
Sbjct: 483 SIVSPSQSAFFAERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQ 542
Query: 592 EVMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAAEG 651
E++ + F W SWIM CVT+ T SVL+NG ERG+RQGDP+SPFLF+L E
Sbjct: 543 EILVALGFNDKWISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEA 602
Query: 652 LNVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLFEDV 711
L ++ ++ + P SV+HL F DDT L+ + ++ M L + +
Sbjct: 603 LIHILQQAENSKKVSGIQFNGSGP-SVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHI 661
Query: 712 SGLKVNFHK-SMFFGVNINES---WLHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLHFWH 767
SG +N K S+ FGV ++E W+ + + H G YLGLP K +
Sbjct: 662 SGQLINVEKSSITFGVKVDEDTKRWIKNRSGI-HLEGGTGK--YLGLPENLSGSKQDLFG 718
Query: 768 PLVERIRRRLSG 779
+ E+++ LSG
Sbjct: 719 YIKEKLQSHLSG 730
Score = 63.2 bits (152), Expect = 8e-10
Identities = 68/262 (25%), Positives = 108/262 (40%), Gaps = 36/262 (13%)
Query: 838 RKVGDGSTTLFWEDPWLLNVPLAVSFSRLFELAENKGVSVREMFLLGWGADGGAWRWRRR 897
R +G+G T W D WL + R L + ++ L+ D W +
Sbjct: 876 RLIGNGEQTNVWIDKWLFDG----HSRRPMNLHSLMNIHMKVSHLI----DPLTRNWNLK 927
Query: 898 LFAWEEELVEECVARLSNFVLQADLSDRWVWRLHSSQLYTVQSAYSYLTA---------- 947
E E+ V + + D + W ++ LYTV+S Y +
Sbjct: 928 KLT--ELFHEKDVQLIMHQRPLISSEDSYCWAGTNNGLYTVKSGYERSSRETFKNLFKEA 985
Query: 948 -VDSNITAEFDRFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNVLEATNVSSGALCGK 1006
V ++ FD+ L+ VP K+ +F+W+ LA +D LR R + A G L K
Sbjct: 986 DVYPSVNPLFDKVWSLETVP-KIKVFMWKALKGALAVEDRLRSRGIRTA----DGCLFCK 1040
Query: 1007 EEER--DHLFFQCDYYGRLW---LLISNWLGFVTVFHDNLYTHANQFCALGGFSKNYMKA 1061
EE +HL FQC + ++W L+ + GF T N+ H Q G ++
Sbjct: 1041 EEIETINHLLFQCPFARQVWALSLIQAPATGFGTSIFSNI-NHVIQNSQNFGIPRHMRTV 1099
Query: 1062 FTIIWISVLFTIWKDRNRRIFQ 1083
W+ L+ IWK+RN+ +FQ
Sbjct: 1100 SP--WL--LWEIWKNRNKTLFQ 1117
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 146 bits (369), Expect = 5e-35
Identities = 91/254 (35%), Positives = 137/254 (53%), Gaps = 9/254 (3%)
Query: 532 VVGSVVFASQSAFIKGRQILDGILIANELVDDAKRNNK---ELLMFKVDFEKAYDSVDWR 588
V+ +++ +QSAF+ GR I D ILIA E+ + N+ + + K D KAYD V+W
Sbjct: 312 VLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWN 371
Query: 589 YLDEVMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLA 648
+++ ++ KM F W SWIM C+TT VL+NG P ERGLRQGDPLSP+LF+L
Sbjct: 372 FIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILC 431
Query: 649 AEGLNVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLF 708
E L + L V P +VSHL FADD+L + + +L +
Sbjct: 432 TEVLIANIRKAERQNLITGIKVATPSP-AVSHLLFADDSLFFCKANKEQCGIILEILKQY 490
Query: 709 EDVSGLKVNFHKSMF-FGVNINESWLHEAAVVMHCRHGRIPFIYLGLP--IGGDPRKLHF 765
E VSG ++NF KS FG + +S + +++ + YLGLP +GG K+
Sbjct: 491 ESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFS 550
Query: 766 WHPLVERIRRRLSG 779
+ + +R++ R++G
Sbjct: 551 F--VRDRLQSRING 562
Score = 58.5 bits (140), Expect = 2e-08
Identities = 71/324 (21%), Positives = 134/324 (40%), Gaps = 40/324 (12%)
Query: 773 IRRRLSGVLEDRESLWNVVLCAKYGEVGGRVQFSEGVGPIW-WRQLNQIRCGVGLAENAW 831
+ ++L ++ +SL+ V +Y + + P + WR + ++ +
Sbjct: 650 LAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSM--------ISARSL 701
Query: 832 LVDNIVRKVGDGSTTLFWEDPWLLNVPLAVSFSRLFELAENKGVSVREMFLLGWGADGGA 891
+ ++++VG G++ W DPW+ F R A+ G V + D +
Sbjct: 702 VYKGLIKRVGSGASISVWNDPWI-----PAQFPRP---AKYGGSIVDPSLKVKSLIDSRS 753
Query: 892 WRWRRRLFAWEEELVEECVARLSNFVL-QADLSDRWVWRLHSSQLYTVQSAYSYL----- 945
W L +E E V +S + ++ D W + YTV+S Y
Sbjct: 754 NFWNIDLL--KELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLN 811
Query: 946 ---TAVDSNITAEFDRFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNVL-EATNVSSG 1001
T + ++T ++W P K+ F+W++ + +NLRKR +L + VS G
Sbjct: 812 EGTTLIGPDLTT-LKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCG 870
Query: 1002 ALCGKEEERDHLFFQCDYYGRLWLLISNWLGFVTVFHDN-LYTHANQFCALGGFSKNYMK 1060
A EE +H FQC ++W L S +F N ++T+ + F +
Sbjct: 871 A---SEESINHTLFQCHPARQIWAL-SQIPTAPGIFPSNSIFTNLDHL-----FWRIPSG 921
Query: 1061 AFTIIWISVLFTIWKDRNRRIFQN 1084
+ + +++ IWK RN ++F+N
Sbjct: 922 VDSAPYPWIIWYIWKARNEKVFEN 945
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 145 bits (367), Expect = 9e-35
Identities = 89/250 (35%), Positives = 137/250 (54%), Gaps = 5/250 (2%)
Query: 533 VGSVVFASQSAFIKGRQILDGILIANELVDDAK---RNNKELLMFKVDFEKAYDSVDWRY 589
+ S+V SQ+AFI GR I D ++IA+E++ K R +K + K D KAYD V+W +
Sbjct: 685 LNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDF 744
Query: 590 LDEVMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAA 649
L+ M F W WIM V + SVL+NG P RG+RQGDPLSP+LF+L
Sbjct: 745 LETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCG 804
Query: 650 EGLNVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLFE 709
+ L+ +++ S+G +G P +++HLQFADD+L + N +A+K V ++E
Sbjct: 805 DILSHLINGRASSGDLRGVRIGNGAP-AITHLQFADDSLFFCQANVRNCQALKDVFDVYE 863
Query: 710 DVSGLKVNFHKSMF-FGVNINESWLHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLHFWHP 768
SG K+N KSM FG + S + ++ + YLGLP +K +
Sbjct: 864 YYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEY 923
Query: 769 LVERIRRRLS 778
+++R+++R S
Sbjct: 924 IIDRVKKRTS 933
Score = 43.1 bits (100), Expect = 9e-04
Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 28/204 (13%)
Query: 899 FAWEEELVEECVARLSN------FVLQADLSDRWVWRLHSSQLYTVQSAYSYLTAVDS-N 951
+ W++ + + V + + ++ ++ D+ +W +++ YTV+S Y LT S N
Sbjct: 1126 YFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTN 1185
Query: 952 ITA--------EFDRFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNVLEATNVSSGAL 1003
I A + +W + K+ F+WR LAT + L R +
Sbjct: 1186 IPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPR--- 1242
Query: 1004 CGKEEER-DHLFFQCDYYGRLWLLISNWLGFVTVFHDNLYTH---ANQFCALGGFSKNYM 1059
C +E E +H F C + W WL ++ + L ++ N L M
Sbjct: 1243 CHRENESINHALFTCPFATMAW-----WLSDSSLIRNQLMSNDFEENISNILNFVQDTTM 1297
Query: 1060 KAF-TIIWISVLFTIWKDRNRRIF 1082
F ++ + +++ IWK RN +F
Sbjct: 1298 SDFHKLLPVWLIWRIWKARNNVVF 1321
>At3g25485 unknown protein
Length = 979
Score = 145 bits (366), Expect = 1e-34
Identities = 137/521 (26%), Positives = 221/521 (42%), Gaps = 70/521 (13%)
Query: 532 VVGSVVFASQSAFIKGRQILDGILIANELVDDA-KRNNKELLMFKVDFEKAYDSVDWRYL 590
++ + +QSAF+K R ++ +L+A E+V D K + + K+D KA+DSV W +L
Sbjct: 469 ILPQFIAGNQSAFVKDRLLIQNLLLATEIVKDYHKESVSDRCAIKIDISKAFDSVQWSFL 528
Query: 591 DEVMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAAE 650
+ V+ +NF + + WIM C+TTA+ SV VNG F+ RGLRQG LSP+LF++A +
Sbjct: 529 ENVLHSLNFSQEFIHWIMLCITTASFSVQVNGELVGFFNSSRGLRQGCSLSPYLFVIAMD 588
Query: 651 GLNVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLFED 710
L+ M+ F Y + + ++HL FADD +++ +V + +V F
Sbjct: 589 VLSKMLDRAAGFKKFG-YHPRCQT-IGLTHLTFADDLMVLSDGKVRSVEGIVSVFDEFAK 646
Query: 711 VSGLKVNFHKSMFFGVNINESWLHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLHFWHPLV 770
SGLK++ KS + + E G +P YLGLP+ + PLV
Sbjct: 647 KSGLKISMEKSTIYLAGSANMYRREIEERFKFAVGSLPVRYLGLPLVTKRFSSADYRPLV 706
Query: 771 ERIRRRLSGVLEDRESLWNVVLCAKYGEVGGRVQFSEGVGPIWWRQLNQIRCGVGLAENA 830
E+I+R++ W A+Y GR+ V IW C +A
Sbjct: 707 EQIKRKI--------GTWT----ARYLSYAGRLNLISSV--IW------SICNFWIAAFR 746
Query: 831 WLVDNIVRKVGDGSTTLFWEDPWLLNVPLAVSFSRLFELAENKGVSVREMFLLGWGADGG 890
L +R++ + W P L + V++ + + G+ +R L D
Sbjct: 747 -LPRECIREIDKLCSAFLWSGPELNSKRAKVNWEAICKPKREGGLGLRS---LKEANDVS 802
Query: 891 A----WRW-------RRRLFAWEEELVEECVARLSNFVLQADLSDRWVWRLHSSQLYTV- 938
WRW R+L + + + C + N + D W + L +
Sbjct: 803 CLKLIWRWVSRGDSLWRKLLKYRDTAKQFCKVDIRNGGRTSFWFDNW---SNMGPLIDIA 859
Query: 939 --------------QSAYSYLTAVDSNITAEFDRFLWLKAVPLKVNIFVWRLFLNRLATK 984
Q +Y+ A T F + F+ +L NRL+T
Sbjct: 860 GQDDTDPHILMPLKQHSYNKEIAEQRRKTLSFGKGRM---------TFISQL-QNRLSTG 909
Query: 985 DNLRKRNVLEATNVSSGALCGKE-EERDHLFFQCDYYGRLW 1024
D + + N ++ LC E RDHLFF CD+ +W
Sbjct: 910 DIMNQWN---GGQSATCVLCNNALETRDHLFFSCDFASEIW 947
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 145 bits (366), Expect = 1e-34
Identities = 89/250 (35%), Positives = 136/250 (53%), Gaps = 5/250 (2%)
Query: 533 VGSVVFASQSAFIKGRQILDGILIANELVDDAK---RNNKELLMFKVDFEKAYDSVDWRY 589
+ S+V SQ+AFI GR I D ++IA+E++ K R +K + K D KAYD V+W +
Sbjct: 911 LNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDF 970
Query: 590 LDEVMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAA 649
L+ M F W WIM V + SVL+NG P RG+RQGDPLSP+LF+L
Sbjct: 971 LETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCG 1030
Query: 650 EGLNVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLFE 709
+ L+ +++ S+G +G P +++HLQFADD+L + N +A+K V ++E
Sbjct: 1031 DILSHLINGRASSGDLRGVRIGNGAP-AITHLQFADDSLFFCQANVRNCQALKDVFDVYE 1089
Query: 710 DVSGLKVNFHKSMF-FGVNINESWLHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLHFWHP 768
SG K+N KSM FG + S ++ + YLGLP +K +
Sbjct: 1090 YYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEY 1149
Query: 769 LVERIRRRLS 778
+++R+++R S
Sbjct: 1150 IIDRVKKRTS 1159
Score = 44.7 bits (104), Expect = 3e-04
Identities = 49/207 (23%), Positives = 86/207 (40%), Gaps = 34/207 (16%)
Query: 899 FAWEEELVEECVARLSN------FVLQADLSDRWVWRLHSSQLYTVQSAYSYLTAVDS-N 951
+ W++ + + V + + ++ ++ D+ +W +++ YTV+S Y LT S N
Sbjct: 1352 YFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTN 1411
Query: 952 ITA--------EFDRFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNVLEATNVSSGAL 1003
I A + +W + K+ F+WR LAT + L R + S
Sbjct: 1412 IPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGM---RIDPSCPR 1468
Query: 1004 CGKEEER-DHLFFQCDYYGRLW-----LLISNWLGFVTVFHDNLYTHAN--QFCALGGFS 1055
C +E E +H F C + W LI N L F +N+ N Q + F
Sbjct: 1469 CHRENESINHALFTCPFATMAWRLSDSSLIRNQL-MSNDFEENISNILNFVQDTTMSDFH 1527
Query: 1056 KNYMKAFTIIWISVLFTIWKDRNRRIF 1082
K ++ + +++ IWK RN +F
Sbjct: 1528 K-------LLPVWLIWRIWKARNNVVF 1547
>At1g24640 hypothetical protein
Length = 1270
Score = 144 bits (362), Expect = 4e-34
Identities = 88/246 (35%), Positives = 129/246 (51%), Gaps = 5/246 (2%)
Query: 536 VVFASQSAFIKGRQILDGILIANELVDDAK---RNNKELLMFKVDFEKAYDSVDWRYLDE 592
+V +QSAF+ R I D IL+A+ELV K R + E + K D KAYD V+W YL
Sbjct: 495 IVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRS 554
Query: 593 VMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAAEGL 652
++ + F W +WIM CV++ T SVL+N CP +RGLRQGDPLSPFLF+L EGL
Sbjct: 555 LLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGL 614
Query: 653 NVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLFEDVS 712
+++ G P+ V HL FADD+L + S ++ +L ++ + +
Sbjct: 615 THLLNKAQWEGALEGIQFSENGPM-VHHLLFADDSLFLCKASREQSLVLQKILKVYGNAT 673
Query: 713 GLKVNFHK-SMFFGVNINESWLHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLHFWHPLVE 771
G +N +K S+ FG ++E + YLGLP K+ H L +
Sbjct: 674 GQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKD 733
Query: 772 RIRRRL 777
R++ +L
Sbjct: 734 RLKEKL 739
Score = 44.3 bits (103), Expect = 4e-04
Identities = 55/269 (20%), Positives = 104/269 (38%), Gaps = 61/269 (22%)
Query: 832 LVDNIVRKVGDGSTTLFWEDPWLLNVPLAVSFSRLFELAENKGVSVREMFLLGWGADGGA 891
L + ++VGDG++ W DPW+ + + + L + + V+ +
Sbjct: 881 LSKGLQKRVGDGASLFVWIDPWIDDNGFRAPWRK--NLIYDVTLKVKALL---------- 928
Query: 892 WRWRRRLFAWEEELVE-----ECVARLSNFVLQADLSDRWVWRLHSSQLYTVQSAY--SY 944
R W+EE++ E + R+ +D +VW+L+ S ++V+SAY +Y
Sbjct: 929 ---NPRTGFWDEEVLHDLFLPEDILRIKAIKPVISQADFFVWKLNKSGDFSVKSAYWLAY 985
Query: 945 LTAVDSNITAE---------FDRFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNVLEA 995
T N+ +E +W K+ IF+W+
Sbjct: 986 QTK-SQNLRSEVSMQPSTLGLKTQVWNLQTDPKIKIFLWK-------------------- 1024
Query: 996 TNVSSGALCGK-EEERDHLFFQCDYYGRLWLLISNWLGFVTVFHDNLYTHANQFCALGGF 1054
+CG+ E +H F C ++W L + ++Y++ N
Sbjct: 1025 -------VCGELGESTNHTLFLCPLSRQIWALSDYPFPPDGFSNGSIYSNINHLLE-NKD 1076
Query: 1055 SKNYMKAFTIIWISVLFTIWKDRNRRIFQ 1083
+K + I+ +L+ IWK+RN IF+
Sbjct: 1077 NKEWPINLRKIFPWILWRIWKNRNSFIFE 1105
>At3g45550 putative protein
Length = 851
Score = 143 bits (361), Expect = 5e-34
Identities = 87/248 (35%), Positives = 135/248 (54%), Gaps = 5/248 (2%)
Query: 533 VGSVVFASQSAFIKGRQILDGILIANELVDDAK---RNNKELLMFKVDFEKAYDSVDWRY 589
+ S+V SQ+AFI GR I D ++IA+E++ K R +K + K D KAYD V+W +
Sbjct: 150 LNSIVSDSQAAFIPGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDF 209
Query: 590 LDEVMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAA 649
L+ M F W WIM V + SVL+NG P RG+RQGDPLSP+LF+L
Sbjct: 210 LETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCG 269
Query: 650 EGLNVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLFE 709
+ L+ ++ S+G +G P +++HLQFADD+L + N +A+K V ++E
Sbjct: 270 DILSHLIKVKASSGDIRGVRIGNGAP-AITHLQFADDSLFFCQANVRNCQALKDVFDVYE 328
Query: 710 DVSGLKVNFHKSMF-FGVNINESWLHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLHFWHP 768
SG K+N KS+ FG + S +++ + YLGLP +K ++
Sbjct: 329 YYSGQKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNY 388
Query: 769 LVERIRRR 776
+++R++ R
Sbjct: 389 IIDRVKER 396
Score = 52.4 bits (124), Expect = 1e-06
Identities = 50/199 (25%), Positives = 80/199 (40%), Gaps = 31/199 (15%)
Query: 911 ARLSNFVLQAD-------------LSDRWVWRLHSSQLYTVQSAYSYLTAVDSNI----- 952
A+L FV Q+D +DR +W +S+ YTV+S Y T SN
Sbjct: 596 AKLQTFVDQSDHDYIKRIYLSTRSKTDRLIWSYNSTGDYTVRSGYWLSTHDPSNTIPTMA 655
Query: 953 ----TAEFDRFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNVLEATNVSSGA-LCGKE 1007
+ + +W + K+ F+WR+ L T D L R + + G C +E
Sbjct: 656 KPHGSVDLKTKIWNLPIMPKLKHFLWRILSKALPTTDRLTTRGM----RIDPGCPRCRRE 711
Query: 1008 EER-DHLFFQCDYYGRLWLLISNWLGFVTVFHDNLYTH-ANQFCALGGFSKNYMKAFTII 1065
E +H F C + W L L ++ +N+ + +N L + +
Sbjct: 712 NESINHALFTCPFATMAWRLSDTPLYRSSILSNNIEDNISNILLLLQNTTITDSQKLIPF 771
Query: 1066 WISVLFTIWKDRNRRIFQN 1084
W+ L+ IWK RN +F N
Sbjct: 772 WL--LWRIWKARNNVVFNN 788
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 142 bits (358), Expect = 1e-33
Identities = 90/252 (35%), Positives = 137/252 (53%), Gaps = 13/252 (5%)
Query: 536 VVFASQSAFIKGRQILDGILIANELVDDAKRN---NKELLMFKVDFEKAYDSVDWRYLDE 592
+V +QSAF+ R + D I++A+E+V + + N +K+ ++FK D KAYD V+W +L
Sbjct: 261 IVSPTQSAFVAERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKG 320
Query: 593 VMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAAEGL 652
++ + F W +W+M CV++ + SVL+NG P RGLRQGDPLSPFLF+L E L
Sbjct: 321 ILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEAL 380
Query: 653 NVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLFEDVS 712
+++ G + P SV+HL FADDTLLI S + L + +S
Sbjct: 381 IHILNQAEKIGKISGIQFNGTGP-SVNHLLFADDTLLICKASQLECAEIMHCLSQYGHIS 439
Query: 713 GLKVNFHKS-MFFGVNINE---SW-LHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLHFWH 767
G +N KS + FG +NE W ++ + + G+ YLGLP K +
Sbjct: 440 GQMINSEKSAITFGAKVNEETKQWIMNRSGIQTEGGTGK----YLGLPECFQGSKQVLFG 495
Query: 768 PLVERIRRRLSG 779
+ E+++ RLSG
Sbjct: 496 FIKEKLQSRLSG 507
Score = 68.2 bits (165), Expect = 2e-11
Identities = 74/327 (22%), Positives = 140/327 (42%), Gaps = 43/327 (13%)
Query: 773 IRRRLSGVLEDRESLWNVVLCAKYGEVGGRVQFSEGVGPIW-WRQLNQIRCGVGLAENAW 831
+ ++ S + D +SL + +L ++Y + ++G P + W+ + L
Sbjct: 595 LAKQASRLHTDSDSLLSQILKSRYYMNSDFLSATKGTRPSYAWQSI--------LYGREL 646
Query: 832 LVDNIVRKVGDGSTTLFWEDPWLL-NVPLAVSFSRLFELAENKGVSVREMFLLGWGADGG 890
LV + + +G+G T W D W+ + P ++ + K + + F W +
Sbjct: 647 LVSGLKKIIGNGENTYVWMDNWIFDDKPRRPESLQIMVDIQLKVSQLIDPFSRNWNLN-- 704
Query: 891 AWRWRRRLFAWEEELVEECVARLSNFVLQADLSDRWVWRLHSSQLYTVQSAYSYLT---- 946
R LF W+E + C R A D + W + LYTV+S Y +
Sbjct: 705 ---MLRDLFPWKEIQI-ICQQR-----PMASRQDSFCWFGTNHGLYTVKSEYDLCSRQVH 755
Query: 947 -------AVDSNITAEFDRFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNVLEATNVS 999
++ F + L + P K+ +F+W++ +A +D LR R VL S
Sbjct: 756 KQMFKEAEEQPSLNPLFGKIWNLNSAP-KIKVFLWKVLKGAVAVEDRLRTRGVLIEDGCS 814
Query: 1000 SGALC-GKEEERDHLFFQCDYYGRLWLLISNWLGFVTVFHDNLYTHANQFCALGGFSKNY 1058
+C K E +H+ FQC ++W L + F D+++T+ N G N
Sbjct: 815 ---MCPEKNETLNHILFQCPLARQVWAL-TPMQSPNHGFGDSIFTNVNHVI---GNCHNT 867
Query: 1059 MKAFTIIWIS--VLFTIWKDRNRRIFQ 1083
+ + ++S +++ +WK+RN+R+F+
Sbjct: 868 ELSPHLRYVSPWIIWILWKNRNKRLFE 894
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 142 bits (358), Expect = 1e-33
Identities = 92/255 (36%), Positives = 141/255 (55%), Gaps = 17/255 (6%)
Query: 535 SVVFASQSAFIKGRQILDGILIANELVDDAKRNN---KELLMFKVDFEKAYDSVDWRYLD 591
++V +QSAF+ R I D IL+A+E++ + N+ KE + FK D KAYD V+W +L+
Sbjct: 509 AIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLE 568
Query: 592 EVMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAAEG 651
+M + F W SWIM CVT+ + SVL+NG P RG+RQGDPLSP LF+L E
Sbjct: 569 TMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEA 628
Query: 652 LNVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLFEDV 711
L +++ G + VSV+HL FADDTLL+ + + L + +
Sbjct: 629 LIHILNKAEQAGKITGIQF-QDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQL 687
Query: 712 SGLKVNFHKS-MFFGVNIN---ESWL-HEAAVVMHCRHGRIPFIYLGLP--IGGDPRKLH 764
SG +N +KS + FG N++ + W+ + + + G+ YLGLP + G R L
Sbjct: 688 SGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGK----YLGLPECLSGSKRDLF 743
Query: 765 FWHPLVERIRRRLSG 779
+ + E+++ RL+G
Sbjct: 744 GF--IKEKLQSRLTG 756
Score = 63.9 bits (154), Expect = 5e-10
Identities = 72/324 (22%), Positives = 140/324 (42%), Gaps = 47/324 (14%)
Query: 780 VLEDRESLWNVVLCAKYGEVGGRVQFSEGVGPIW-WRQLNQIRCGVGLAENAWLVDNIVR 838
VL+++ SL++ V ++Y + + G P + WR + L L+ +
Sbjct: 851 VLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSI--------LFGRELLMQGLRT 902
Query: 839 KVGDGSTTLFWEDPWLLNVPLAVSFSRLFELAENKGVSVREMFLLGWGADGGAWRWR--- 895
+G+G T W D WL + +R + N + V ++ D + W
Sbjct: 903 VIGNGQKTFVWTDKWLHDGSNRRPLNRRRFI--NVDLKVSQLI------DPTSRNWNLNM 954
Query: 896 -RRLFAWEEELVEECVARLSNFVLQADLSDRWVWRLHSSQLYTVQSAYSYLTA------- 947
R LF W++ VE + + F + D + W + LY+V++ Y +L+
Sbjct: 955 LRDLFPWKD--VEIILKQRPLFFKE----DSFCWLHSHNGLYSVKTGYEFLSKQVHHRLY 1008
Query: 948 ----VDSNITAEFDRFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNVLEATNVSSGAL 1003
V ++ + FD+ L P K+ IF+W+ + +D LR R + + +
Sbjct: 1009 QEAKVKPSVNSLFDKIWNLHTAP-KIRIFLWKALHGAIPVEDRLRTRGI---RSDDGCLM 1064
Query: 1004 CGKEEER-DHLFFQCDYYGRLWLLISNWLGFVTVFHDNLYTHANQFCALGGFSK-NYMKA 1061
C E E +H+ F+C ++W I++ + F +++YT+ ++ L + +
Sbjct: 1065 CDTENETINHILFECPLARQVW-AITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLR 1123
Query: 1062 FTIIWISVLFTIWKDRNRRIFQNQ 1085
F WI L+ +WK+RN +F+ +
Sbjct: 1124 FVSPWI--LWFLWKNRNALLFEGK 1145
>At1g23990 reverse transcriptase, putative
Length = 657
Score = 140 bits (353), Expect = 4e-33
Identities = 80/248 (32%), Positives = 137/248 (54%), Gaps = 3/248 (1%)
Query: 531 MVVGSVVFASQSAFIKGRQILDGILIANELVDDA-KRNNKELLMFKVDFEKAYDSVDWRY 589
MV+ + +Q+AF+K R +++ +L+A ELV D K + K+D KA++SV W +
Sbjct: 1 MVLPKFIAGNQTAFVKDRLLIENLLLATELVKDYHKESVSSRCAIKIDISKAFNSVQWSF 60
Query: 590 LDEVMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAA 649
+ ++ M+FP + WIM C++TA+ SV VNG F +RGLRQG LSP+LF+++
Sbjct: 61 IRNILLSMDFPMEFVHWIMLCISTASFSVQVNGELVGFFQSKRGLRQGCSLSPYLFVMSM 120
Query: 650 EGLNVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLFE 709
+ L+ ++ S F ++ E +S++HL FADD +++ ++ + V +F
Sbjct: 121 DVLSKLLDQAASAKKFGYHSRCKE--LSLTHLSFADDLMVLSDGKVRSIDGIVEVFDIFA 178
Query: 710 DVSGLKVNFHKSMFFGVNINESWLHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLHFWHPL 769
SGLK++ KS + + E HE G++P YLGLP+ + PL
Sbjct: 179 KFSGLKISMEKSTIYLAGVTEDVYHEIQNRYQFDVGQLPVRYLGLPLVTKRLTATDYSPL 238
Query: 770 VERIRRRL 777
+E I++++
Sbjct: 239 LEHIKKKI 246
Score = 39.7 bits (91), Expect = 0.009
Identities = 64/293 (21%), Positives = 101/293 (33%), Gaps = 65/293 (22%)
Query: 803 VQFSEGVGPIWWRQLNQIRCGVGLAENAWLVDNIVRKVGDGSTTLFWEDPWLLNVPLAVS 862
VQ + +G WR+L + R +A+ V+ V +G FW + W +
Sbjct: 368 VQTTTNMGSWMWRKLLKYR---DIAKQFCKVE-----VKNGKRVAFWYENWS-------N 412
Query: 863 FSRLFELAENKG---VSVREMFLLGWGADGGAWRWRRRLFAWEEELVEECVARLSNFVLQ 919
L +L ++G + + L +D A R +RR + +EE + N
Sbjct: 413 LGVLNDLVGDRGRIDLGITSHMTL---SDAWASRQQRRHRSATLNQIEEAIMLGRNDEYM 469
Query: 920 ADLSDRWVWRLHSSQLYTVQSAYSYLTAVDSNITAEFDRFLWLKAVPLKVNIFVWRLFLN 979
S R W +++ + +W K + W N
Sbjct: 470 PKFSTRDTWN----------------QTRNTSTPVTWHMGIWFAHATPKFSFCAWLAVQN 513
Query: 980 RLATKDNLRKRNV-LEATNVSSGALCGKE-EERDHLFFQCDYYGRLW----------LLI 1027
RL+T D + + N L T V LC E R+HLFF C Y +W
Sbjct: 514 RLSTGDKMLQWNRRLSPTCV----LCNNNIETRNHLFFSCCYTAEIWENLAKNIYKAKFS 569
Query: 1028 SNWLGFVTVFHDNLYTHANQFCALGGFSKNYMKAFTIIWISVLFTIWKDRNRR 1080
+NW +T F A I+ + + TIW +RN R
Sbjct: 570 TNWSTILTSVSTTWRNRTESFLA------------RYIFQATIHTIWHERNGR 610
>At4g26360 putative protein
Length = 1141
Score = 138 bits (348), Expect = 1e-32
Identities = 83/242 (34%), Positives = 134/242 (55%), Gaps = 4/242 (1%)
Query: 532 VVGSVVFASQSAFIKGRQILDGILIANELVDDAKRNNKELL-MFKVDFEKAYDSVDWRYL 590
++ V+ SQSAF+ GR + + +L+A E+V N L M KVD KA+DSV W ++
Sbjct: 525 LLSCVISPSQSAFLPGRLLAENVLLATEMVHGYNWRNISLRGMLKVDLRKAFDSVRWEFI 584
Query: 591 DEVMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAAE 650
+ + P + +WI +C++T T +V VNGC F +GLRQGDPLSP+LF+LA E
Sbjct: 585 IAALLALGVPTKFINWIHQCISTPTFTVSVNGCCGGFFKSAKGLRQGDPLSPYLFVLAME 644
Query: 651 GLNVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLFED 710
+ ++++ +G + ++ +S+SHL FADD ++ +++ + L F
Sbjct: 645 VFSKLLNSRFDSGYIRYHPKASD--LSISHLMFADDVMIFFDGGSSSLHGICETLEDFAS 702
Query: 711 VSGLKVNFHKSMFFGVNINESWLHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLHFWHPLV 770
SGLKVN KS FF + ++ + A G +P YLGLP+ ++ + PL+
Sbjct: 703 WSGLKVNNDKSHFFCAGLEQAERNSLA-AYGFPQGCLPIRYLGLPLMCRKLRIAEYEPLL 761
Query: 771 ER 772
E+
Sbjct: 762 EK 763
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 135 bits (340), Expect = 1e-31
Identities = 89/255 (34%), Positives = 133/255 (51%), Gaps = 11/255 (4%)
Query: 532 VVGSVVFASQSAFIKGRQILDGILIANELVDDAKRNNK---ELLMFKVDFEKAYDSVDWR 588
++ S++ +Q+AF+KGR I D ILIA+EL+ NNK E + K D KAYD V+W
Sbjct: 528 ILPSLISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWP 587
Query: 589 YLDEVMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLA 648
+L++ M + F W IMECV + VL+NG P E RGLRQGDPLSP+LF++
Sbjct: 588 FLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVIC 647
Query: 649 AEGLNVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLF 708
E L M+ + V P +SHL FADD++ N A+ ++ +
Sbjct: 648 TEMLVKMLQSAEQKNQITGLKVARGAP-PISHLLFADDSMFY---CKVNDEALGQIIRII 703
Query: 709 ED---VSGLKVNFHK-SMFFGVNINESWLHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLH 764
E+ SG +VN+ K S++FG +I+E + +YLGLP K+
Sbjct: 704 EEYSLASGQRVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVA 763
Query: 765 FWHPLVERIRRRLSG 779
L +R+ +++ G
Sbjct: 764 TLSYLKDRLGKKVLG 778
Score = 60.5 bits (145), Expect = 5e-09
Identities = 61/261 (23%), Positives = 103/261 (39%), Gaps = 25/261 (9%)
Query: 840 VGDGSTTLFWEDPWLLNVPL----AVSFSRLFELAENKGVSVREMFLLGWGADGGAWRWR 895
+G+G T W DPW+ P AV S L + V + LL DG W W
Sbjct: 926 IGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLL---PDGRDWNWN 982
Query: 896 RRLFAWEEELVEECVARLSNFVLQADLSDRWVWRLHSSQLYTVQSAYSYLTAVDSN---- 951
+ + E +A + DR+ W S Y+V+S Y +T + +
Sbjct: 983 LVSLLFPDNTQENILALRPG---GKETRDRFTWEYSRSGHYSVKSGYWVMTEIINQRNNP 1039
Query: 952 ---ITAEFDRF---LWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNVLEATNVSSGALCG 1005
+ D +W VP K++ F+WR N L+ NL R++ A S
Sbjct: 1040 QEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHL--AREKSCVRCPS 1097
Query: 1006 KEEERDHLFFQCDYYGRLWLLISNWLGFVTVFHDNLYTHANQFCALGGFSKNYMKAFTII 1065
E +HL F+C + W + + ++L+ + + ++ +I
Sbjct: 1098 HGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPEESDHHALI 1157
Query: 1066 -WISVLFTIWKDRNRRIFQNQ 1085
WI L+ +WK+RN +F+ +
Sbjct: 1158 PWI--LWRLWKNRNDLVFKGR 1176
>At1g25430 hypothetical protein
Length = 1213
Score = 133 bits (335), Expect = 5e-31
Identities = 146/605 (24%), Positives = 243/605 (40%), Gaps = 140/605 (23%)
Query: 532 VVGSVVFASQSAFIKGRQILDGILIANELVDDAKRNN-KELLMFKVDFEKAYDSVDWRYL 590
++ V+ ++QSAF+ GR + + +L+A +LV +N M KVD +KA+DSV W ++
Sbjct: 547 LLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFV 606
Query: 591 DEVMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAAE 650
+ + P + +WI +C++T T +V +NG F +GLRQGDPLSP+LF+LA E
Sbjct: 607 IAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAME 666
Query: 651 GLNVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLFED 710
+ ++ + +GL + + +S+SHL FADD ++ ++ + L F
Sbjct: 667 AFSNLLHSRYESGLIHYHPKASN--LSISHLMFADDVMIFFDGGSFSLHGICETLDDFAS 724
Query: 711 VSGLKVNFHKSMFF--GVNINESWLHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLHFWHP 768
SGLKVN KS + G+N ES A G +P YLGLP+ ++ + P
Sbjct: 725 WSGLKVNKDKSHLYLAGLNQLES---NANAAYGFPIGTLPIRYLGLPLMNRKLRIAEYEP 781
Query: 769 LVERIRRR-----------------LSGVLEDRESLWNVV-------------LCAKYGE 798
L+E+I R +S V+ + W LC+++
Sbjct: 782 LLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRF-L 840
Query: 799 VGGRVQFSEGVGPIWWRQ-LNQIRCGVGLAENAWLVDNIVRKVGDGSTTLFWEDPWLLNV 857
G ++ ++G+ W L + G+GL R++ + + TL W L V
Sbjct: 841 WSGNIEQAKGIKVSWAALCLPKSEGGLGL-----------RRLLEWNKTLSMRLIWRLFV 889
Query: 858 ---PLAVSFSRLFELAENKGVSVREMFLLGWGADGG---AWRWRRRLFAWEEELVEECVA 911
L + L L+ W +GG +W W +RL + + V
Sbjct: 890 AKDSLWADWQHLHHLSRGS----------FWAVEGGQSDSWTW-KRLLSLRPLAHQFLVC 938
Query: 912 RLSNFVLQADLSDRWV---------------------------------WRLHSSQLYTV 938
++ N + D W WRL S+
Sbjct: 939 KVGNGLKADYWYDNWTSLGPLFRIIGDIGPSSLRVPLLAKVASAFSEDGWRLPVSRSAPA 998
Query: 939 QSAYSYLTAVDSNITA--EFDRFLW---------------LKAVPLKVNIFVWR------ 975
+ + +L V TA + DR+ W +A+ K + W
Sbjct: 999 KGIHDHLCTVPVPSTAQEDVDRYEWSVNGFLCQGFSAAKTWEAIRPKATVKSWASSIWFK 1058
Query: 976 ------------LFLNRLATKDNLRKRNVLEATNVSSGALCG-KEEERDHLFFQCDYYGR 1022
LNRL T+ L +++ + LC E RDHL C++ +
Sbjct: 1059 GAVPKYAFNMWVSHLNRLLTRQRLASWGHIQS---DACVLCSFASESRDHLLLICEFSAQ 1115
Query: 1023 LWLLI 1027
+W L+
Sbjct: 1116 VWRLV 1120
>At3g44650 putative protein
Length = 762
Score = 132 bits (333), Expect = 8e-31
Identities = 77/248 (31%), Positives = 131/248 (52%), Gaps = 3/248 (1%)
Query: 531 MVVGSVVFASQSAFIKGRQILDGILIANELVDDAKRNN-KELLMFKVDFEKAYDSVDWRY 589
+++ + +QS+F+K R +++ +L+A +LV D +++ E K+D KA DSV W +
Sbjct: 105 LLLPQFIAGNQSSFVKDRLLIENVLLATDLVKDYHKDSISERCAIKIDISKASDSVQWSF 164
Query: 590 LDEVMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAA 649
L + M+FP ++ WI C+TT + SV VNG F RGLRQG LSP+LF++
Sbjct: 165 LINTLTAMHFPEMFIHWIRLCITTPSFSVQVNGELAGFFQSSRGLRQGCALSPYLFVICM 224
Query: 650 EGLNVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLFE 709
+ L+ ++ V G + + ++HL FADD +++ ++ + V LF
Sbjct: 225 DVLSKLLDKVVGIGRIGYHPHCKR--MGLTHLSFADDLMILTDGQCRSIEGIIEVFDLFS 282
Query: 710 DVSGLKVNFHKSMFFGVNINESWLHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLHFWHPL 769
SGLK++ KS F ++ + + G +P YLGLP+ + PL
Sbjct: 283 KWSGLKISMEKSTIFSAGLSSTSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSVDYAPL 342
Query: 770 VERIRRRL 777
+E+IR+R+
Sbjct: 343 IEQIRKRI 350
Score = 46.6 bits (109), Expect = 8e-05
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 20/191 (10%)
Query: 839 KVGDGSTTLFWEDPWLLNVPLAVSFSRLFELAENKGVSVREMFLLGWGADGGAWRWRRRL 898
+VG+G +T FW D W L RL ++A +G +M + + AW RRR
Sbjct: 500 EVGNGESTSFWFDDWSL-------LGRLIDVAGIRGTI--DMGISRTMSVADAWTSRRRR 550
Query: 899 FAWEEEL--VEECVARLSNFVLQADLSDRWVWRLHS---SQLYTVQSAYSYLTAVDSNIT 953
+E L +EE ++ Q R +W+ + ++ ++ ++YL + +
Sbjct: 551 HHRQEILNTIEEVLSTQHQKRTQQQQQGRVLWKGKNDIYKDKFSTKNTWNYLRTTSNEVA 610
Query: 954 AEFDRFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNVLEATNVSSGALCGKE-EERDH 1012
+ + +W K + +W +RLAT + K N E + + C + E RDH
Sbjct: 611 --WHKGVWFPHATPKYSFCLWLAAHDRLATGARMIKWNRGETGDCT---FCRQGIETRDH 665
Query: 1013 LFFQCDYYGRL 1023
LFF + G L
Sbjct: 666 LFFMQLHIGSL 676
>At4g12180 putative reverse transcriptase
Length = 662
Score = 132 bits (331), Expect = 1e-30
Identities = 82/247 (33%), Positives = 133/247 (53%), Gaps = 3/247 (1%)
Query: 532 VVGSVVFASQSAFIKGRQILDGILIANELVDDAKRNN-KELLMFKVDFEKAYDSVDWRYL 590
V+ + +QSAFIK R +++ +L+A ELV D +++ E K+D KA+DSV W +L
Sbjct: 71 VLPQFIAGNQSAFIKDRLLIENLLLATELVKDYHKDSVSERCAIKIDISKAFDSVQWSFL 130
Query: 591 DEVMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAAE 650
V+ ++FP+ + WIM CVTTA+ SV VN F+ RGLRQG L+P+LF++ +
Sbjct: 131 RNVLLTLDFPQEFVHWIMLCVTTASFSVQVNRELAGYFNSLRGLRQGCSLTPYLFVIVMD 190
Query: 651 GLNVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLFED 710
L+ + F + + ++HL FADD +++ ++ + V F
Sbjct: 191 VLSKKLDRAAGLRKFGYHPKCKN--LGLTHLSFADDIMVLTDGKLRSLEGIVEVFDSFAK 248
Query: 711 VSGLKVNFHKSMFFGVNINESWLHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLHFWHPLV 770
SGLK++ K+ + I++S E H GR+P YL LP+ + PL+
Sbjct: 249 QSGLKISMAKTTIYFAGISKSVCKEFEDQFHFAVGRLPVRYLCLPLVTKRFTSQDYSPLL 308
Query: 771 ERIRRRL 777
E+I+RR+
Sbjct: 309 EQIKRRI 315
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 132 bits (331), Expect = 1e-30
Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 5/250 (2%)
Query: 531 MVVGSVVFASQSAFIKGRQILDGILIANELVDDAKRNNKEL---LMFKVDFEKAYDSVDW 587
+++ ++ +QSAF+ GR I D +LI +E++ + ++ + + K D KAYD V+W
Sbjct: 422 LILPKLISENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEW 481
Query: 588 RYLDEVMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLL 647
+L +V+ + F +W W++ECVT+ + S L+NG P + RGLRQGDPLSP LF+L
Sbjct: 482 DFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFIL 541
Query: 648 AAEGLNVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLL 707
E L+ + + V P V+HL FADDT+ + + +L
Sbjct: 542 CTEVLSGLCTRAQRLRQLPGVRVSINGP-RVNHLLFADDTMFFSKSDPESCNKLSEILSR 600
Query: 708 FEDVSGLKVNFHK-SMFFGVNINESWLHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLHFW 766
+ SG +NFHK S+ F S + ++ R YLGLP RK +
Sbjct: 601 YGKASGQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIF 660
Query: 767 HPLVERIRRR 776
++++IR++
Sbjct: 661 GAIIDKIRQK 670
Score = 47.8 bits (112), Expect = 3e-05
Identities = 58/256 (22%), Positives = 94/256 (36%), Gaps = 35/256 (13%)
Query: 780 VLEDRESLWNVVLCAKYGEVGGRVQFSEGVGPIW-WRQL----NQIRCGVGLAENAWLVD 834
+L ESL + +L KY ++ P WR + ++ G+G WL+
Sbjct: 768 LLNSPESLLSRILLGKYCHSSSFMECKLPSQPSHGWRSIIAGREILKEGLG-----WLIT 822
Query: 835 NIVRKVGDGSTTLFWEDPWL-LNVPLAVSFSRLFELAENKGVSVREMFLLGWGADGGAWR 893
N G W DPWL ++ PL L E + + ++ L W W
Sbjct: 823 N-------GEKVSIWNDPWLSISKPLVPIGPALREHQDLRVSALINQNTLQWD-----WN 870
Query: 894 WRRRLFAWEEELVEECVARLSNFVLQADLSDRWVWRLHSSQLYTVQSAYSYLTAVDSNIT 953
+ E L+++ A S V D+ W S YT +S Y + I
Sbjct: 871 KIAVILPNYENLIKQLPAPSSRGV------DKLAWLPVKSGQYTSRSGYGIASVASIPIP 924
Query: 954 A---EFDRFLWLKAVPLKVNIFVWRLFLNRLATKDNLRKRNVLEATNVSSGALCGKEEER 1010
+ LW K+ +W+ + L L +R++ + CG E
Sbjct: 925 QTQFNWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHISPSAACHR---CGAPEST 981
Query: 1011 DHLFFQCDYYGRLWLL 1026
HLFF C++ ++W L
Sbjct: 982 THLFFHCEFAAQVWEL 997
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 130 bits (328), Expect = 3e-30
Identities = 81/248 (32%), Positives = 123/248 (48%), Gaps = 5/248 (2%)
Query: 533 VGSVVFASQSAFIKGRQILDGILIANELVDDAKRNNKEL---LMFKVDFEKAYDSVDWRY 589
+ ++ QSAF+ GR I D +LI +E++ + + + + K D KAYD + W +
Sbjct: 470 LSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNF 529
Query: 590 LDEVMAKMNFPRLWRSWIMECVTTATTSVLVNGCPTDEFHFERGLRQGDPLSPFLFLLAA 649
L EV+ ++ F W W+M+CV T + S L+NG P RGLRQGDPLSP+LF+L
Sbjct: 530 LQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCT 589
Query: 650 EGLNVMMSTVGSNGLFAPYTVGAEVPVSVSHLQFADDTLLIGVKSWANVRAMKTVLLLFE 709
E L+ + G+ V P V+HL FADDT+ + A+ +L +E
Sbjct: 590 EVLSGLCRKAQEKGVMVGIRVARGSP-QVNHLLFADDTMFFCKTNPTCCGALSNILKKYE 648
Query: 710 DVSGLKVNFHKS-MFFGVNINESWLHEAAVVMHCRHGRIPFIYLGLPIGGDPRKLHFWHP 768
SG +N KS + F + + + + YLGLP RK +
Sbjct: 649 LASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRKRDIFSS 708
Query: 769 LVERIRRR 776
+V+RIR+R
Sbjct: 709 IVDRIRQR 716
Score = 52.0 bits (123), Expect = 2e-06
Identities = 74/318 (23%), Positives = 118/318 (36%), Gaps = 43/318 (13%)
Query: 780 VLEDRESLWNVVLCAKYGEVGGRVQFSEG--VGPIWWRQLNQIRCGVGLAENAWLVDNIV 837
+L++ SL + VL KY + S WR + LA L +
Sbjct: 807 ILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFASHGWRGI--------LAGRDLLRKGLG 858
Query: 838 RKVGDGSTTLFWEDPWLLNVPLAVSFSRLFELAENKGVSVREMF---LLGWGADGGAWRW 894
+G G + W + WL E NK +SV ++ + W +
Sbjct: 859 WSIGQGDSINVWTEAWLSPSSPQTPIGPPTET--NKDLSVHDLICHDVKSWNVEA----I 912
Query: 895 RRRLFAWEEELVEECVARLSNFVLQADLSDRWVWRLHSSQLYTVQSAYSYLTAVDSNITA 954
R+ L +E+++ + + L L D VW S YT ++ Y+ L ++S +
Sbjct: 913 RKHLPQYEDQIRKITINALP-------LQDSLVWLPVKSGEYTTKTGYA-LAKLNSFPAS 964
Query: 955 EFDRFLWLKAV-----PLKVNIFVWRLFLNRLATKDNLRKRNVLEATNVSSGALCGKEEE 1009
+ D F W K + KV F+W+ L + L +RN+ CG+ E
Sbjct: 965 QLD-FNWQKNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKR---CGQTES 1020
Query: 1010 RDHLFFQCDYYGRLWLLISNWLGFVTVFHDN---LYTHANQFCALGGFSKNYMKAFTIIW 1066
HL C Y ++W L H + L A + AL + W
Sbjct: 1021 SLHLMLLCPYAKKVWELAPVLFNPSEATHSSVALLLVDAKRMVALPPTGLGSAPLYP--W 1078
Query: 1067 ISVLFTIWKDRNRRIFQN 1084
+ L+ +WK RNR IF N
Sbjct: 1079 L--LWHLWKARNRLIFDN 1094
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.347 0.155 0.542
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,438,576
Number of Sequences: 26719
Number of extensions: 901949
Number of successful extensions: 3893
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3474
Number of HSP's gapped (non-prelim): 211
length of query: 1086
length of database: 11,318,596
effective HSP length: 110
effective length of query: 976
effective length of database: 8,379,506
effective search space: 8178397856
effective search space used: 8178397856
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 65 (29.6 bits)
Medicago: description of AC146752.14