BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146720.2 - phase: 0 
         (1333 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g59265 polyprotein, putative                                       806  0.0
At1g58889 polyprotein, putative                                       805  0.0
At4g02960 putative polyprotein of LTR transposon                      787  0.0
At4g16870 retrotransposon like protein                                783  0.0
At4g10690 retrotransposon like protein                                780  0.0
At1g44510 polyprotein, putative                                       771  0.0
At1g31210 putative reverse transcriptase                              766  0.0
At1g53810                                                             741  0.0
At4g28900 putative protein                                            690  0.0
At4g27210 putative protein                                            675  0.0
At2g20460 putative retroelement pol polyprotein                       643  0.0
At4g14460 retrovirus-related like polyprotein                         587  e-167
At2g13940 putative retroelement pol polyprotein                       586  e-167
At3g61330 copia-type polyprotein                                      585  e-167
At2g16670 putative retroelement pol polyprotein                       560  e-159
At2g07010 putative retroelement pol polyprotein                       547  e-155
At2g14930 pseudogene                                                  504  e-142
At4g27200 putative protein                                            469  e-132
At4g10990 putative retrotransposon polyprotein                        405  e-113
At1g58140 hypothetical protein                                        381  e-105

>At1g59265 polyprotein, putative
          Length = 1466

 Score =  806 bits (2083), Expect = 0.0
 Identities = 505/1389 (36%), Positives = 708/1389 (50%), Gaps = 185/1389 (13%)

Query: 62   TASSYCQHIKSLSDQLANVGAPVSNERMVLQLVSGLSEAYDTVGSQIRHSDTLPPFYKAR 121
            T   Y Q + +  DQLA +G P+ ++  V +++  L E Y  V  QI   DT P   +  
Sbjct: 141  TIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIH 200

Query: 122  SMVVLEETARAKRTAVTTANSTFLAAQEDNNSGNSPSHR-PNRNNNSNNGSRGGRGGSGN 180
              ++  E+   K  AV++A    + A       N+ SHR     NN+NNG+R  R  + N
Sbjct: 201  ERLLNHES---KILAVSSATVIPITA-------NAVSHRNTTTTNNNNNGNRNNRYDNRN 250

Query: 181  NHGGRGRGRGGGRGGRSHNYQQGSWQQPQAPQHQWAYPPYQYPSWNAPWQPWATPPCPYP 240
            N+                                           + PWQ  +T   P  
Sbjct: 251  NNNN-----------------------------------------SKPWQQSSTNFHP-- 267

Query: 241  TTGNWQRPVVPNRQ-AGILGAKPQQA----HVAAT------PSSYAPTDIQAAMHSLSLA 289
               N  +P +   Q  G+ G   ++     H  ++      PS + P   +A   +L+L 
Sbjct: 268  -NNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPPSPFTPWQPRA---NLALG 323

Query: 290  PP--DEQWYMDTGATSHMTANGGNLTSYSNIS--NNITVGSGHNIPVIGCGNALVQNPQY 345
             P     W +D+GAT H+T++  NL+ +   +  +++ V  G  IP+   G+  +     
Sbjct: 324  SPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSR 383

Query: 346  PLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLY- 404
            PL L+N+L+ P + KNL+SV +    N VSVEF P  F VKD  TG+PL++  +  +LY 
Sbjct: 384  PLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYE 443

Query: 405  -PLAT-RPYYPSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSI-LCNKFRNNFFCQ 461
             P+A+ +P     +PS+ A  S+  WH RLGHP  SILNS+  N S+ + N       C 
Sbjct: 444  WPIASSQPVSLFASPSSKATHSS--WHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCS 501

Query: 462  SCQLGKQIKLPFYESLSSTLLPFDIVHSDIWTSPILSSGGHHYYILFLDDFTDFLWTFPL 521
             C + K  K+PF +S  ++  P + ++SD+W+SPILS   + YY++F+D FT + W +PL
Sbjct: 502  DCLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPILSHDNYRYYVIFVDHFTRYTWLYPL 561

Query: 522  TNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTS 581
              KSQ    F+ F N ++ +F+  I  F  DNG E+      ++  Q+G+    S PHT 
Sbjct: 562  KQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEF--VALWEYFSQHGISHLTSPPHTP 619

Query: 582  PQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQTPTTILY 641
              NG  ERK R I     TLL+HAS+P ++W +A  +A YL+N LPT  L L++P   L+
Sbjct: 620  EHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLF 679

Query: 642  QKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIIS 701
              SP+Y  L+VFGC C+P +    ++KL  +S  CVFLGY      Y C  L + ++ IS
Sbjct: 680  GTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYIS 739

Query: 702  RHVIFDEN-----------------------------TFPFSNSNIPESSCYNFLDTSDT 732
            RHV FDEN                             T P     +P  SC +    +  
Sbjct: 740  RHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHHAATP 799

Query: 733  PF----PYHLFQ-HTSNLPTNEPNSHDQPPTTTAT------PLTTPYSINTTTH------ 775
            P     P+   Q  +SNL ++  +S    P  TA       P T P    T TH      
Sbjct: 800  PSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTS 859

Query: 776  -------------QPTVAPSPQIQTSPQLTITPNTASPHQIPPPNPLLANPPLSP----- 817
                         Q    P+    +SP  T + +++S    PP   +   PPL+      
Sbjct: 860  QNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNN 919

Query: 818  --------QMTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQDHNWKMAMKDEYD 869
                     M TRA+ GI KP    +L  S + +  P     I AL+D  W+ AM  E +
Sbjct: 920  NQAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEP--RTAIQALKDERWRNAMGSEIN 977

Query: 870  ALIDNKTWDLVPRP-SNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQTGVDCGET 928
            A I N TWDLVP P S+  I+   WIF  K  +DGS  RYKARLV  G NQ+ G+D  ET
Sbjct: 978  AQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAET 1037

Query: 929  FSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRDPQHPDYVC 988
            FSPV+K  +IR VL +A+ +SW + QLDV NAFL G L + VYM QPPGF D   P+YVC
Sbjct: 1038 FSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVC 1097

Query: 989  LLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYVDDIILT 1048
             L+K+LYGLKQAPRAWY    +Y+ T+GF +SV D SLF+   G    Y+L+YVDDI++T
Sbjct: 1098 KLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILIT 1157

Query: 1049 ASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTR-----HSDDTK------------- 1090
             +  TL  + +  L+  F++KD   L YFLGI   R     H    +             
Sbjct: 1158 GNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMIT 1217

Query: 1091 -----------AKLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQVCLFMHDPK 1139
                        KLS  SG    DP+EYR + G+LQYL FTRPDISYAV ++  FMH P 
Sbjct: 1218 AKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPT 1277

Query: 1140 TQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGYCVYLGDN 1199
             +H+ ALKRI+RY+ GT  HG+ L       L  Y+DADW G  D   ST+GY VYLG +
Sbjct: 1278 EEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHH 1337

Query: 1200 LVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNVSAVY 1259
             +SWS+K+Q  + RSS EAEYR VAN  SE  W+ +LL EL   +T+  ++YCDNV A Y
Sbjct: 1338 PISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATY 1397

Query: 1260 LSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLPLQLFDDFRDS 1319
            L  NP+ H R KHI +D HF+R +V  G +RV+HV +  Q+AD  TK L    F +F   
Sbjct: 1398 LCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASK 1457

Query: 1320 LHIRQPPVS 1328
            + + + P S
Sbjct: 1458 IGVTRVPPS 1466


>At1g58889 polyprotein, putative
          Length = 1466

 Score =  805 bits (2079), Expect = 0.0
 Identities = 504/1389 (36%), Positives = 707/1389 (50%), Gaps = 185/1389 (13%)

Query: 62   TASSYCQHIKSLSDQLANVGAPVSNERMVLQLVSGLSEAYDTVGSQIRHSDTLPPFYKAR 121
            T   Y Q + +  DQLA +G P+ ++  V +++  L E Y  V  QI   DT P   +  
Sbjct: 141  TIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIH 200

Query: 122  SMVVLEETARAKRTAVTTANSTFLAAQEDNNSGNSPSHR-PNRNNNSNNGSRGGRGGSGN 180
              ++  E+   K  AV++A    + A       N+ SHR     NN+NNG+R  R  + N
Sbjct: 201  ERLLNHES---KILAVSSATVIPITA-------NAVSHRNTTTTNNNNNGNRNNRYDNRN 250

Query: 181  NHGGRGRGRGGGRGGRSHNYQQGSWQQPQAPQHQWAYPPYQYPSWNAPWQPWATPPCPYP 240
            N+                                           + PWQ  +T   P  
Sbjct: 251  NNNN-----------------------------------------SKPWQQSSTNFHP-- 267

Query: 241  TTGNWQRPVVPNRQ-AGILGAKPQQA----HVAAT------PSSYAPTDIQAAMHSLSLA 289
               N  +P +   Q  G+ G   ++     H  ++      PS + P   +A   +L+L 
Sbjct: 268  -NNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPPSPFTPWQPRA---NLALG 323

Query: 290  PP--DEQWYMDTGATSHMTANGGNLTSYSNIS--NNITVGSGHNIPVIGCGNALVQNPQY 345
             P     W +D+GAT H+T++  NL+ +   +  +++ V  G  IP+   G+  +     
Sbjct: 324  SPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSR 383

Query: 346  PLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLY- 404
            PL L+N+L+ P + KNL+SV +    N VSVEF P  F VKD  TG+PL++  +  +LY 
Sbjct: 384  PLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYE 443

Query: 405  -PLAT-RPYYPSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSI-LCNKFRNNFFCQ 461
             P+A+ +P     +PS+ A  S+  WH RLGHP  SILNS+  N S+ + N       C 
Sbjct: 444  WPIASSQPVSLFASPSSKATHSS--WHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCS 501

Query: 462  SCQLGKQIKLPFYESLSSTLLPFDIVHSDIWTSPILSSGGHHYYILFLDDFTDFLWTFPL 521
             C + K  K+PF +S  ++  P + ++SD+W+SPILS   + YY++F+D FT + W +PL
Sbjct: 502  DCLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPILSHDNYRYYVIFVDHFTRYTWLYPL 561

Query: 522  TNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTS 581
              KSQ    F+ F N ++ +F+  I  F  DNG E+      ++  Q+G+    S PHT 
Sbjct: 562  KQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEF--VALWEYFSQHGISHLTSPPHTP 619

Query: 582  PQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQTPTTILY 641
              NG  ERK R I     TLL+HAS+P ++W +A  +A YL+N LPT  L L++P   L+
Sbjct: 620  EHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLF 679

Query: 642  QKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIIS 701
              SP+Y  L+VFGC C+P +    ++KL  +S  CVFLGY      Y C  L + ++ IS
Sbjct: 680  GTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYIS 739

Query: 702  RHVIFDEN-----------------------------TFPFSNSNIPESSCYNFLDTSDT 732
            RHV FDEN                             T P     +P  SC +    +  
Sbjct: 740  RHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHHAATP 799

Query: 733  PF----PYHLFQ-HTSNLPTNEPNSHDQPPTTTAT------PLTTPYSINTTTH------ 775
            P     P+   Q  +SNL ++  +S    P  TA       P T P    T TH      
Sbjct: 800  PSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTS 859

Query: 776  -------------QPTVAPSPQIQTSPQLTITPNTASPHQIPPPNPLLANPPLSP----- 817
                         Q    P+    +SP  T + +++S    PP   +   PPL+      
Sbjct: 860  QNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNN 919

Query: 818  --------QMTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQDHNWKMAMKDEYD 869
                     M TRA+ GI KP    +L  S + +  P     I AL+D  W+ AM  E +
Sbjct: 920  NQAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEP--RTAIQALKDERWRNAMGSEIN 977

Query: 870  ALIDNKTWDLVPRP-SNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQTGVDCGET 928
            A I N TWDLVP P S+  I+   WIF  K  +DGS  RYKAR V  G NQ+ G+D  ET
Sbjct: 978  AQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRPGLDYAET 1037

Query: 929  FSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRDPQHPDYVC 988
            FSPV+K  +IR VL +A+ +SW + QLDV NAFL G L + VYM QPPGF D   P+YVC
Sbjct: 1038 FSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVC 1097

Query: 989  LLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYVDDIILT 1048
             L+K+LYGLKQAPRAWY    +Y+ T+GF +SV D SLF+   G    Y+L+YVDDI++T
Sbjct: 1098 KLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILIT 1157

Query: 1049 ASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTR-----HSDDTK------------- 1090
             +  TL  + +  L+  F++KD   L YFLGI   R     H    +             
Sbjct: 1158 GNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMIT 1217

Query: 1091 -----------AKLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQVCLFMHDPK 1139
                        KLS  SG    DP+EYR + G+LQYL FTRPDISYAV ++  FMH P 
Sbjct: 1218 AKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPT 1277

Query: 1140 TQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGYCVYLGDN 1199
             +H+ ALKRI+RY+ GT  HG+ L       L  Y+DADW G  D   ST+GY VYLG +
Sbjct: 1278 EEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHH 1337

Query: 1200 LVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNVSAVY 1259
             +SWS+K+Q  + RSS EAEYR VAN  SE  W+ +LL EL   +T+  ++YCDNV A Y
Sbjct: 1338 PISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATY 1397

Query: 1260 LSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLPLQLFDDFRDS 1319
            L  NP+ H R KHI +D HF+R +V  G +RV+HV +  Q+AD  TK L    F +F   
Sbjct: 1398 LCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASK 1457

Query: 1320 LHIRQPPVS 1328
            + + + P S
Sbjct: 1458 IGVTRVPPS 1466


>At4g02960 putative polyprotein of LTR transposon
          Length = 1456

 Score =  787 bits (2032), Expect = 0.0
 Identities = 493/1386 (35%), Positives = 687/1386 (48%), Gaps = 195/1386 (14%)

Query: 75   DQLANVGAPVSNERMVLQLVSGLSEAYDTVGSQIRHSDTLPPFYKARSMVVLEETARAKR 134
            DQLA +G P+ ++  V +++  L + Y  V  QI   DT P   +    ++  E+   K 
Sbjct: 135  DQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERLINRES---KL 191

Query: 135  TAVTTANSTFLAAQEDNNSGNSPSHRPNRNNNSNNGSRGGRGGSGNNHGGRGRGRGGGRG 194
             A+ +A    + A       N  +HR N N N N  +RG      NN+      +    G
Sbjct: 192  LALNSAEVVPITA-------NVVTHR-NTNTNRNQNNRGDNRNYNNNNNRSNSWQPSSSG 243

Query: 195  GRSHNYQQGSW---------------QQPQAPQHQWAYPPYQYPSWNAPWQPWATPPCPY 239
             RS N Q   +               + PQ  Q Q      Q  S   PWQP A      
Sbjct: 244  SRSDNRQPKPYLGRCQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQPRANLAVNS 303

Query: 240  PTTGNWQRPVVPNRQAGILGAKPQQAHVAATPSSYAPTDIQAAMHSLSLAPPDEQWYMDT 299
            P   N                                                  W +D+
Sbjct: 304  PYNAN-------------------------------------------------NWLLDS 314

Query: 300  GATSHMTANGGNLTSYSNIS--NNITVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHAPK 357
            GAT H+T++  NL+ +   +  +++ +  G  IP+   G+A +      L LN VL+ P 
Sbjct: 315  GATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPN 374

Query: 358  LIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPYYPSTTP 417
            + KNL+SV +    N VSVEF P  F VKD  TG+PL++  +  +LY     P   S   
Sbjct: 375  IHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEW---PIASSQAV 431

Query: 418  STFAA----LSNEIWHNRLGHPGVSILNSLHRNNSI-LCNKFRNNFFCQSCQLGKQIKLP 472
            S FA+     ++  WH+RLGHP ++ILNS+  N+S+ + N       C  C + K  K+P
Sbjct: 432  SMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVP 491

Query: 473  FYESLSSTLLPFDIVHSDIWTSPILSSGGHHYYILFLDDFTDFLWTFPLTNKSQAHSIFL 532
            F  S  ++  P + ++SD+W+SPILS   + YY++F+D FT + W +PL  KSQ    F+
Sbjct: 492  FSNSTITSSKPLEYIYSDVWSSPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFI 551

Query: 533  QFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNGKVERKIR 592
             F + ++ +F+  I     DNG E+       +  Q+G+    S PHT   NG  ERK R
Sbjct: 552  IFKSLVENRFQTRIGTLYSDNGGEF--VVLRDYLSQHGISHFTSPPHTPEHNGLSERKHR 609

Query: 593  TINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQTPTTILYQKSPSYSHLKV 652
             I  +  TLL+HAS+P ++W +A  +A YL+N LPT  L LQ+P   L+ + P+Y  LKV
Sbjct: 610  HIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKV 669

Query: 653  FGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIISRHVIFDENTFP 712
            FGC C+P +    R+KL+ +S  C F+GY      Y C  + + ++  SRHV FDE  FP
Sbjct: 670  FGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFP 729

Query: 713  FSNSN-----------------------------IPESSCYN-FLDTS----DTPFPYHL 738
            FS +N                             +P   C    LDTS     +P P   
Sbjct: 730  FSTTNFGVSTSQEQRSDSAPNWPSHTTLPTTPLVLPAPPCLGPHLDTSPRPPSSPSPLCT 789

Query: 739  FQ-HTSNLPT----------------NEPNSHDQPPTTTATPLTTPYSINTTTHQPTV-- 779
             Q  +SNLP+                N P    QP  T  +   +P   N   + P+   
Sbjct: 790  TQVSSSNLPSSSISSPSSSEPTAPSHNGPQPTAQPHQTQNSNSNSPILNNPNPNSPSPNS 849

Query: 780  ----APSPQIQTSPQLTITPNTA---------SPHQIPPPNPLLANPPL----------S 816
                +P PQ   S     TP+T+         S    PP  P+L  PP+          +
Sbjct: 850  PNQNSPLPQSPISSPHIPTPSTSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNT 909

Query: 817  PQMTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQDHNWKMAMKDEYDALIDNKT 876
              M TRA+ GI KP Q  +  TS +    P     I A++D  W+ AM  E +A I N T
Sbjct: 910  HSMATRAKDGIRKPNQKYSYATSLAANSEP--RTAIQAMKDDRWRQAMGSEINAQIGNHT 967

Query: 877  WDLVPRPS-NANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQTGVDCGETFSPVVKP 935
            WDLVP P  +  I+   WIF  K  +DGS  RYKARLV  G NQ+ G+D  ETFSPV+K 
Sbjct: 968  WDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKS 1027

Query: 936  ATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRDPQHPDYVCLLKKSLY 995
             +IR VL +A+ +SW + QLDV NAFL G L + VYM QPPGF D   PDYVC L+K++Y
Sbjct: 1028 TSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIY 1087

Query: 996  GLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYVDDIILTASSDTLR 1055
            GLKQAPRAWY     Y+ T+GF +S+ D SLF+   G    Y+L+YVDDI++T +   L 
Sbjct: 1088 GLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLL 1147

Query: 1056 QSIMSKLNSEFAMKDLGPLSYFLGI-----------SVTRHSDD---------------- 1088
            +  +  L+  F++K+   L YFLGI           S  R++ D                
Sbjct: 1148 KHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATP 1207

Query: 1089 --TKAKLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQVCLFMHDPKTQHMTAL 1146
              T  KL+  SG    DP+EYR + G+LQYL FTRPD+SYAV ++  +MH P   H  AL
Sbjct: 1208 MATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNAL 1267

Query: 1147 KRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAK 1206
            KR++RY+ GT  HG+ L       L  Y+DADW G  D   ST+GY VYLG + +SWS+K
Sbjct: 1268 KRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSK 1327

Query: 1207 RQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQ 1266
            +Q  + RSS EAEYR VAN  SE  W+ +LL EL   ++   ++YCDNV A YL  NP+ 
Sbjct: 1328 KQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVF 1387

Query: 1267 HQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLPLQLFDDFRDSLHIRQPP 1326
            H R KHI +D HF+R +V  G +RV+HV +  Q+AD  TK L    F +F   + + + P
Sbjct: 1388 HSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIKVP 1447

Query: 1327 VSTTGV 1332
             S  GV
Sbjct: 1448 PSCGGV 1453


>At4g16870 retrotransposon like protein
          Length = 1474

 Score =  783 bits (2022), Expect = 0.0
 Identities = 493/1386 (35%), Positives = 684/1386 (48%), Gaps = 179/1386 (12%)

Query: 62   TASSYCQHIKSLSDQLANVGAPVSNERMVLQLVSGLSEAYDTVGSQIRHSDTLPPFYKAR 121
            T   Y     +L DQLA +G P+ +E  V +++ GL E Y TV  QI   D  P   +  
Sbjct: 149  TIDEYVLSHTTLLDQLAILGKPMEHEEQVERILEGLPEDYKTVVDQIEGKDNTPSITEIH 208

Query: 122  SMVVLEETARAKRTAVTTANSTFLAAQEDNNSGNSPSHRPNRNNNSNNGSRGGRGGSGNN 181
              ++  E A+   TA  +++S  ++A    N      H  NRNNN N     G       
Sbjct: 209  ERLINHE-AKLLSTAALSSSSLPMSA----NVAQQRHHNNNRNNNQNKNRTQG------- 256

Query: 182  HGGRGRGRGGGRGGRSHNYQQGSWQQPQAPQHQWAYPPYQYPSWNAPWQPWATPPCPYPT 241
                             N    +WQ           P     S   P++P+    C    
Sbjct: 257  -----------------NTYTNNWQ-----------PSANNKSGQRPFKPYLGK-CQICN 287

Query: 242  TGNWQRPVVPNRQAGILGAKPQQAHVAATPSSYAPTDIQAAMHSLSLAPP--DEQWYMDT 299
                     P  QA        Q   +++ S++ P   +A   +L++  P     W +D+
Sbjct: 288  VQGHSARRCPQLQA-------MQPSSSSSASTFTPWQPRA---NLAMGAPYTANNWLLDS 337

Query: 300  GATSHMTANGGNLTSYSNIS-NNITVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHAPKL 358
            GAT H+T++   L  +   + +++ +  G ++ +   G+  + +    LTLN VL+ P +
Sbjct: 338  GATHHITSDLNALALHQPYNGDDVMIADGTSLKITKTGSTFLPSNARDLTLNKVLYVPDI 397

Query: 359  IKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLY------PLATRPYY 412
             KNLVSV +    N+VSVEF P  F VKD  TG  L++  +  +LY      P AT  + 
Sbjct: 398  QKNLVSVYRLCNTNQVSVEFFPASFQVKDLNTGTLLLQGRTKDELYEWPVTNPKATALF- 456

Query: 413  PSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSILCN-KFRNNFFCQSCQLGKQIKL 471
              TTPS    LS+  WH+RLGHP  SILN+L    S+  +    N   C  C + K  KL
Sbjct: 457  --TTPSPKTTLSS--WHSRLGHPSSSILNTLISKFSLPVSVSASNKLACSDCFINKSHKL 512

Query: 472  PFYESLSSTLLPFDIVHSDIWTSPILSSGGHHYYILFLDDFTDFLWTFPLTNKSQAHSIF 531
            PF  S   +  P + + SD+W SPILS   + YY++ +D  T + W +PL  KSQ  S F
Sbjct: 513  PFSISSIKSTSPLEYIFSDVWMSPILSPDNYKYYLVLVDHHTRYTWLYPLQQKSQVKSTF 572

Query: 532  LQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNGKVERKI 591
            + F   ++ +F+  I+    DNG E+      +F   NG+    S PHT   NG  ERK 
Sbjct: 573  IAFKALVENRFQAKIRTLYSDNGGEF--IALREFLVSNGISHLTSPPHTPEHNGLSERKH 630

Query: 592  RTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQTPTTILYQKSPSYSHLK 651
            R I     TLL  AS+P  +W +A   A YL+N +PT  L++++P   L+   P+Y  L+
Sbjct: 631  RHIVETGLTLLTQASVPREYWPYAFAAAVYLINRMPTPVLSMESPFQKLFGSKPNYERLR 690

Query: 652  VFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIISRHVIFDENTF 711
            VFGCLCFP +   T NKL+ RS  CVFLGY      Y CF++  +++  SRHV+FDE +F
Sbjct: 691  VFGCLCFPWLRPYTHNKLEERSRRCVFLGYSLTQTAYLCFDVEHKRLYTSRHVVFDEASF 750

Query: 712  PFSNSNIPESSCYNFLDTSDTPFPYHLFQHTSNLPT----------------NEPNS-HD 754
            PFSN     S      + S +P    +   +S LP+                  PNS H 
Sbjct: 751  PFSNLTSQNSLPTVTFEQSSSPLVTPILSSSSVLPSCLSSPCTVLHQQQPPVTTPNSPHS 810

Query: 755  QPPTTTATPLTTPYS--------------------------------------------- 769
              PTT+  PL+   S                                             
Sbjct: 811  SQPTTSPAPLSPHRSTTMDFQVPQVRSSSPLLSSSSSLNSEPTAPNENGPEPEAQSPPIG 870

Query: 770  -INTTTHQPTVAPSPQIQTSPQLTITPNTASPHQIP-PPNPLLANP-----------PLS 816
             ++  TH+  + P P    +P   I P T +PH  P  P      P           P +
Sbjct: 871  PLSNPTHEAFIGPLPNPNRNPTNEIEP-TPAPHPKPVKPTTTTTTPNRTTVSDASHQPTA 929

Query: 817  PQ-----MTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQDHNWKMAMKDEYDAL 871
            PQ     M TRA++ I KP    +L  +  N+    PTN   AL+D  W+ AM DE+DA 
Sbjct: 930  PQQNQHNMKTRAKNNIKKPNTKFSLTATLPNRSPSEPTNVTQALKDKKWRFAMSDEFDAQ 989

Query: 872  IDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQTGVDCGETFSP 931
              N TWDLVP  S   ++   W+F+ K   +G+ ++YKARLV  G NQQ GVD  ETFSP
Sbjct: 990  QRNHTWDLVPHESQL-LVGCKWVFKLKYLPNGAIDKYKARLVAKGFNQQYGVDYAETFSP 1048

Query: 932  VVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRDPQHPDYVCLLK 991
            V+K  TIR VL +A+ K W + QLDV NAFL G L E VYM QPPGF D   P +VC L+
Sbjct: 1049 VIKSTTIRLVLDVAVKKDWEIKQLDVNNAFLQGTLTEEVYMAQPPGFIDKDRPTHVCRLR 1108

Query: 992  KSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYVDDIILTASS 1051
            K++YGLKQAPRAWY     ++  +GF +S+ D SLFIY  G    Y+L+YVDDII+T S 
Sbjct: 1109 KAIYGLKQAPRAWYMELKQHLFNIGFVNSLSDASLFIYCHGTTFVYVLVYVDDIIVTGSD 1168

Query: 1052 DTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTRHSD------------------------ 1087
             +   ++++ L   F++KD   L YFLGI  TR                           
Sbjct: 1169 KSSIDAVLTSLAERFSIKDPTDLHYFLGIEATRTKQGLHLMQRKYIKDLLAKHNMADAKP 1228

Query: 1088 -----DTKAKLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQVCLFMHDPKTQH 1142
                  T  KL+   G   +D SEYRS+ G+LQYL FTRPDI+YAV ++   M  P   H
Sbjct: 1229 VLTPLPTSPKLTLHGGTKLNDASEYRSVVGSLQYLAFTRPDIAYAVNRLSQLMPQPTEDH 1288

Query: 1143 MTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVS 1202
              A KR++RY+ GTSTHG+ L  ++   L  ++DADW G  D   ST+ Y +YLG N +S
Sbjct: 1289 WQAAKRVLRYLAGTSTHGIFLDTTSPLNLHAFSDADWAGDSDDYVSTNAYVIYLGKNPIS 1348

Query: 1203 WSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNVSAVYLSG 1262
            WS+K+Q  ++RSS E+EYR VAN  SE  WL +LL +L   +     ++CDN+ A YL  
Sbjct: 1349 WSSKKQRGVARSSTESEYRAVANAASEVKWLCSLLSKLHIRLPIRPSIFCDNIGATYLCA 1408

Query: 1263 NPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLPLQLFDDFRDSLHI 1322
            NP+ H R KHI +D HFVR  +  G +RV HV +R Q+AD  TK L    F   R  + +
Sbjct: 1409 NPVFHSRMKHIAIDYHFVRNMIQSGALRVSHVSTRDQLADALTKPLSRAHFQSARFKIGV 1468

Query: 1323 RQPPVS 1328
            RQ P S
Sbjct: 1469 RQLPPS 1474


>At4g10690 retrotransposon like protein
          Length = 1515

 Score =  780 bits (2015), Expect = 0.0
 Identities = 484/1354 (35%), Positives = 706/1354 (51%), Gaps = 153/1354 (11%)

Query: 62   TASSYCQHIKSLSDQLANVGAPVSNERMVLQLVSGLSEAYDTVGSQIRHS-DTLP-PFYK 119
            T  +Y   +K++ DQL ++G PV+ +  +  +++GL + Y+++ + I HS D  P P + 
Sbjct: 136  TMDAYLSEVKNICDQLDSIGFPVTEQEKIFGVLNGLGKEYESIATVIEHSLDVYPGPCFD 195

Query: 120  ARSMVVLEETARAKRTAVTTANSTF---LAAQEDNNSGNSPSHRPNRNNNSNNGSRGGRG 176
                VV + T    + +  TANS     LA   D +           ++  NN SRGGR 
Sbjct: 196  D---VVYKLTTFDDKLSTYTANSEVTPHLAFYTDKSY----------SSRGNNNSRGGRY 242

Query: 177  GSGNNHGGRGRGRGGGRGGRSHNYQQGSWQQPQAPQHQWAYPPYQYPSWNAPWQPWATPP 236
            G+      RGRG    RG R  + Q GS     +                          
Sbjct: 243  GNF-----RGRGSYSSRG-RGFHQQFGSGSNNGS-------------------------- 270

Query: 237  CPYPTTGNWQRPVVPN-RQAGILGAKPQQAHVAATPSSYAPTDIQAAMHSLSLAPPDE-- 293
                  GN  +P     R+ G    K           +Y P D+  A  ++ ++  ++  
Sbjct: 271  ------GNGSKPTCQICRKYGHSAFKCYTRF----EENYLPEDLPNAFAAMRVSDQNQAS 320

Query: 294  --QWYMDTGATSHMTANGGNLTSYSNIS--NNITVGSGHNIPVIGCGNALVQNPQYPLTL 349
              +W  D+ AT+H+T     L +    S  +++ VG+G  +P+   G   +   Q  L L
Sbjct: 321  SHEWLPDSAATAHITNTTDGLQNSQTYSGDDSVIVGNGDFLPITHIGTIPLNISQGTLPL 380

Query: 350  NNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATR 409
             +VL  P + K+L+SV K T D   S  FD     +KD +T   L + N    LY L   
Sbjct: 381  EDVLVCPGITKSLLSVSKLTDDYPCSFTFDSDSVVIKDKRTQQLLTQGNKHKGLYVLKDV 440

Query: 410  P---YYPSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSILCNKFRNNFFCQSCQLG 466
            P   YY +   S+     +E+WH RLGHP   +L  L +  +I+ NK  +N  C++CQ+G
Sbjct: 441  PFQTYYSTRQQSS----DDEVWHQRLGHPNKEVLQHLIKTKAIVVNKTSSNM-CEACQMG 495

Query: 467  KQIKLPFYESLSSTLLPFDIVHSDIW-TSPILSSGGHHYYILFLDDFTDFLWTFPLTNKS 525
            K  +LPF  S   +  P + +H D+W  +P+ S+ G  YY++F+D+++ F W +PL  KS
Sbjct: 496  KVCRLPFVASEFVSSRPLERIHCDLWGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKS 555

Query: 526  QAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNG 585
               S+F+ F   ++ Q++  I  FQCD G E+ +  F       G+    SCPHT  QNG
Sbjct: 556  DFFSVFVLFQQLVENQYQHKIAMFQCDGGGEFVSYKFVAHLASCGIKQLISCPHTPQQNG 615

Query: 586  KVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLA-LQTPTTILYQKS 644
              ER+ R +  +  +L+ H+ +P   W  A   + +L N+LP+  L+  ++P  +L+   
Sbjct: 616  IAERRHRYLTELGLSLMFHSKVPHKLWVEAFFTSNFLSNLLPSSTLSDNKSPYEMLHGTP 675

Query: 645  PSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIISRHV 704
            P Y+ L+VFG  C+P +    +NK   +S  CVFLGY + ++GY+C    + K+ I RHV
Sbjct: 676  PVYTALRVFGSACYPYLRPYAKNKFDPKSLLCVFLGYNNKYKGYRCLHPPTGKVYICRHV 735

Query: 705  IFDENTFPFSN--------SNIPESSCYN--FLDTS---DTP--------FPYHLFQHTS 743
            +FDE  FP+S+        S  P  + +   F  T+   +TP        FP      +S
Sbjct: 736  LFDERKFPYSDIYSQFQTISGSPLFTAWQKGFSSTALSRETPSTNVEDIIFPSATV--SS 793

Query: 744  NLPTN-EPN--------------SHDQ-----PPTTTATPLTTPYSINTTTHQPTVAPSP 783
            ++PT   PN              +HD      P T+T+ P     S +   H  T + + 
Sbjct: 794  SVPTGCAPNIAETATAPDVDVAAAHDMVVPPSPITSTSLPTQPEESTSDQNHYSTDSETA 853

Query: 784  QIQTSPQLTITPNTASPHQIPPPNPLLANPPLSPQ----MTTRAQHGIFKPRQLLNLHTS 839
                    +I  +       PP   ++++   +P+    M TRA+ GI KP     L + 
Sbjct: 854  ISSAMTPQSINVSLFEDSDFPPLQSVISSTTAAPETSHPMITRAKSGITKPNPKYALFSV 913

Query: 840  SSNQISPLPTNPINALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKK 899
             SN   P P +   AL+D  W  AM +E   + +  TWDLVP      ++   W+F+ K 
Sbjct: 914  KSNY--PEPKSVKEALKDEGWTNAMGEEMGTMHETDTWDLVPPEMVDRLLGCKWVFKTKL 971

Query: 900  KADGSFERYKARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKN 959
             +DGS +R KARLV  G  Q+ GVD  ET+SPVV+ AT+R++L +A    W L QLDVKN
Sbjct: 972  NSDGSLDRLKARLVARGYEQEEGVDYVETYSPVVRSATVRSILHVATINKWSLKQLDVKN 1031

Query: 960  AFLHGNLNETVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSH 1019
            AFLH  L ETV+M QPPGF DP  PDYVC LKK++Y LKQAPRAW+ +F+ Y+   GF  
Sbjct: 1032 AFLHDELKETVFMTQPPGFEDPSRPDYVCKLKKAIYDLKQAPRAWFDKFSSYLLKYGFIC 1091

Query: 1020 SVCDHSLFIYHSGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLG 1079
            S  D SLF+Y  G D  ++LLYVDD+ILT ++D L Q +++ L++EF MKD+G L YFLG
Sbjct: 1092 SFSDPSLFVYLKGRDVMFLLLYVDDMILTGNNDVLLQQLLNILSTEFRMKDMGALHYFLG 1151

Query: 1080 ISVTRHSD-------------------------DTKAKLSGTSGN--PYHDPSEYRSLAG 1112
            I    H+D                          T  +L    GN  P+ +P+ +R LAG
Sbjct: 1152 IQAHYHNDGLFLSQEKYTSDLLVNAGMSDCSSMPTPLQLDLLQGNNKPFPEPTYFRRLAG 1211

Query: 1113 ALQYLTFTRPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLT 1172
             LQYLT TRPDI +AV  VC  MH P       LKRI+ Y+KGT T G++L  +T   L 
Sbjct: 1212 KLQYLTLTRPDIQFAVNFVCQKMHAPTMSDFHLLKRILHYLKGTMTMGINLSSNTDSVLR 1271

Query: 1173 TYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCW 1232
             Y+D+DW GC DTR+ST G+C +LG N++SWSAKR PT+S+SS EAEYR ++   SE  W
Sbjct: 1272 CYSDSDWAGCKDTRRSTGGFCTFLGYNIISWSAKRHPTVSKSSTEAEYRTLSFAASEVSW 1331

Query: 1233 LRNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVM 1292
            +  LL E+  P  +   +YCDN+SAVYLS NP  H R+KH ++D ++VRE+VA G + V 
Sbjct: 1332 IGFLLQEIGLPQQQIPEMYCDNLSAVYLSANPALHSRSKHFQVDYYYVRERVALGALTVK 1391

Query: 1293 HVPSRYQIADIFTKGLPLQLFDDFRDSLHIRQPP 1326
            H+P+  Q+ADIFTK LP   F D R  L +  PP
Sbjct: 1392 HIPASQQLADIFTKSLPQAPFCDLRFKLGVVLPP 1425


>At1g44510 polyprotein, putative
          Length = 1459

 Score =  771 bits (1992), Expect = 0.0
 Identities = 484/1384 (34%), Positives = 687/1384 (48%), Gaps = 162/1384 (11%)

Query: 48   LEQEFSKISMEQFSTASSYCQHIKSLSDQLANVGAPVSNERMVLQLVSGLSEAYDTVGSQ 107
            L Q+  +++ +   T   Y Q   +  DQLA +G P+ +E  V  ++ GL E Y TV  Q
Sbjct: 135  LRQQIQRLT-KGTKTIDEYVQSHTTRLDQLAILGKPMEHEEQVEHILKGLPEEYKTVVDQ 193

Query: 108  IRHSDTLPPFYKARSMVVLEETARAKRTAVTTANSTFLAAQEDNNSGNSPSHRPNRNNNS 167
            I   D  P   +    ++  E+         +++           S N+   R N NNN 
Sbjct: 194  IEGKDNTPTITEIHERLINHESKLLSDEVPPSSSFPM--------SANAVQQR-NFNNNC 244

Query: 168  NNGSRGGRGGSGNNHGGRGRGRGGGRGGRSHNYQQGSWQQPQA--PQHQWAYPPYQYPSW 225
            N           N H  R +G        +HN    +  QP       Q  + PY     
Sbjct: 245  NQ----------NQHKNRYQGN-------THNNNTNTNSQPSTYNKSGQRTFKPYLGKCQ 287

Query: 226  NAPWQPWATPPCPYPTTGNWQRPVVPNRQAGILGAKPQQAHVAATPSSYAPTDIQAAMHS 285
                Q  +   CP                      + Q   + A+ S+++P        +
Sbjct: 288  ICSVQGHSARRCP----------------------QLQAMQLPASSSAHSPFTPWQPRAN 325

Query: 286  LSLAPP--DEQWYMDTGATSHMTANGGNLTSYS--NISNNITVGSGHNIPVIGCGNALVQ 341
            L++  P     W +D+GAT H+T++   L+ +   N    + +  G  + +   G+  + 
Sbjct: 326  LAIGSPYAANPWLLDSGATHHITSDLNALSLHQPYNGGEYVMIADGTGLTIKQTGSTFLP 385

Query: 342  NPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSG 401
            +    L L+ VL+ P + KNL+SV +    N+VSVEF P  F VKD  TG  L++  +  
Sbjct: 386  SQNRDLALHKVLYVPDIRKNLISVYRLCNTNQVSVEFFPASFQVKDLNTGTLLLQGRTKD 445

Query: 402  DLY------PLATRPYYPSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSILCNKFR 455
            DLY      P AT  +   T+PS    LS+  WH+RLGHP  SILN+L    S+  +   
Sbjct: 446  DLYEWPVTNPPATALF---TSPSPKTTLSS--WHSRLGHPSASILNTLLSKFSLPVSVAS 500

Query: 456  NN-FFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIWTSPILSSGGHHYYILFLDDFTD 514
            +N   C  C + K  KLPF  S   +  P + + +D+WTSPI+S   + YY++ +D +T 
Sbjct: 501  SNKTSCSDCLINKSHKLPFATSSIHSSSPLEYIFTDVWTSPIISHDNYKYYLVLVDHYTR 560

Query: 515  FLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFR 574
            + W +PL  KSQ  + F+ F   ++ +F+  I+    DNG E+       F   NG+   
Sbjct: 561  YTWLYPLQQKSQVKATFIAFKALVENRFQAKIRTLYSDNGGEF--IALRDFLVSNGISHL 618

Query: 575  FSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQ 634
             S PHT   NG  ERK R I     TLL  AS+P  +W +A   A YL+N +PT  L LQ
Sbjct: 619  TSPPHTPEHNGLSERKHRHIVETGLTLLTQASVPREYWTYAFATAVYLINRMPTPVLCLQ 678

Query: 635  TPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELS 694
            +P   L+  SP+Y  L+VFGCLCFP +   TRNKL+ RS  CVFLGY      Y C ++ 
Sbjct: 679  SPFQKLFGSSPNYQRLRVFGCLCFPWLRPYTRNKLEERSKRCVFLGYSLTQTAYLCLDVD 738

Query: 695  SRKIIISRHVIFDENTFPFSNS----------NIPESSCYNFLDTSDTPFPYHLFQHTS- 743
            + ++  SRHV+FDE+T+PF+ S            PESS  +    +++ FP  + +  S 
Sbjct: 739  NNRLYTSRHVMFDESTYPFAASIREQSQSSLVTPPESSSSS--SPANSGFPCSVLRLQSP 796

Query: 744  -----NLPTNEPNSHDQPPTTTATPLTTPYSINTTTHQPTVAPSPQIQTS---------- 788
                   P+     +D P +   T   TP S ++     T++PSP +  S          
Sbjct: 797  PASSPETPSPPQQQNDSPVSPRQTGSPTP-SHHSQVRDSTLSPSPSVSNSEPTAPHENGP 855

Query: 789  -PQLTITPNTASPHQIPPPNP-----------------LLANPP---------------- 814
             P+    PN+     +P PNP                   A PP                
Sbjct: 856  EPEAQSNPNSPFIGPLPNPNPETNPSSSIEQRPVDKSTTTALPPNQTTIAATSNSRSQPP 915

Query: 815  -LSPQMTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQDHNWKMAMKDEYDALID 873
              + QM TR+++ I KP+   +L  + +      P     AL+D  W+ AM DE+DA   
Sbjct: 916  KNNHQMKTRSKNNITKPKTKTSLTVALTQPHLSEPNTVTQALKDKKWRFAMSDEFDAQQR 975

Query: 874  NKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQTGVDCGETFSPVV 933
            N TWDLVP     +++   W+F+ K   +G  ++YKARLV  G NQQ GVD  ETFSPV+
Sbjct: 976  NHTWDLVPPNPTQHLVGCRWVFKLKYLPNGLIDKYKARLVAKGFNQQYGVDYAETFSPVI 1035

Query: 934  KPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRDPQHPDYVCLLKKS 993
            K  TIR VL +A+ K+W L QLDV NAFL G L E VYM QPPGF D   P +VC L+K+
Sbjct: 1036 KATTIRVVLDVAVKKNWPLKQLDVNNAFLQGTLTEEVYMAQPPGFVDKDRPSHVCRLRKA 1095

Query: 994  LYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYVDDIILTASSDT 1053
            +YGLKQAPRAWY     ++  +GF +S+ D SLFIY  G    Y+L+YVDDII+T S   
Sbjct: 1096 IYGLKQAPRAWYMELKQHLLNIGFVNSLADTSLFIYSHGTTLLYLLVYVDDIIVTGSDHK 1155

Query: 1054 LRQSIMSKLNSEFAMKDLGPLSYFLGISVTRHSD-------------------------- 1087
               +++S L   F++KD   L YFLGI  TR +                           
Sbjct: 1156 SVSAVLSSLAERFSIKDPTDLHYFLGIEATRTNTGLHLMQRKYMTDLLAKHNMLDAKPVA 1215

Query: 1088 ---DTKAKLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQVCLFMHDPKTQHMT 1144
                T  KL+   G   +D SEYRS+ G+LQYL FTRPDI++AV ++  FMH P + H  
Sbjct: 1216 TPLPTSPKLTLHGGTKLNDASEYRSVVGSLQYLAFTRPDIAFAVNRLSQFMHQPTSDHWQ 1275

Query: 1145 ALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWS 1204
            A KR++RY+ GT+THG+ L  S+   L  ++DADW G      ST+ Y +YLG N +SWS
Sbjct: 1276 AAKRVLRYLAGTTTHGIFLNSSSPIHLHAFSDADWAGDSADYVSTNAYVIYLGRNPISWS 1335

Query: 1205 AKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNVSAVYLSGNP 1264
            +K+Q  +SRSS E+EYR VAN  SE  WL +LL EL   +     ++CDN+ A Y+  NP
Sbjct: 1336 SKKQRGVSRSSTESEYRAVANAASEIRWLCSLLTELHIRLPHGPTIFCDNIGATYICANP 1395

Query: 1265 IQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLPLQLFDDFRDSLHIRQ 1324
            + H R KHI +D HFVR  +    +RV HV +  Q+AD  TK L    F   R  + +RQ
Sbjct: 1396 VFHSRMKHIALDYHFVRGMIQSRALRVSHVSTNDQLADALTKSLSRPHFLSARSKIGVRQ 1455

Query: 1325 PPVS 1328
             P S
Sbjct: 1456 LPPS 1459


>At1g31210 putative reverse transcriptase
          Length = 1415

 Score =  766 bits (1977), Expect = 0.0
 Identities = 473/1331 (35%), Positives = 679/1331 (50%), Gaps = 126/1331 (9%)

Query: 40   NKNS--RALYLEQEFSKISMEQFSTASSYCQHIKSLSDQLANVGAPVSNERMVLQLVSGL 97
            NK+S  R   L Q    +S ++    S YC+  K++ D L+++G PV     +   ++GL
Sbjct: 117  NKSSVAREFSLRQNLQLLSKKE-KPFSVYCREFKTICDALSSIGKPVDESMKIFGFLNGL 175

Query: 98   SEAYDTVGSQIRHSDTLPPFYKARSMVVLEETARAKRTAVTTANST--FLAAQEDNNSGN 155
               YD + + I+ S +  P      +V   +   +K  +   A S    LA   + +   
Sbjct: 176  GRDYDPITTVIQSSLSKLPTPTFNDVVSEVQGFDSKLQSYEEAASVTPHLAFNIERSESG 235

Query: 156  SPSHRPNRNNNSNNGSRGGRGGSGNNHGGRGRGRGGGRGGRSHNYQQGSWQQPQAPQHQW 215
            SP + PN+     +G   GRGG    +  RGRG                       QHQ 
Sbjct: 236  SPQYNPNQKGRGRSGQNKGRGG----YSTRGRGFS---------------------QHQS 270

Query: 216  AYPPYQYPSWNAPWQPWATPPCPYPTTGNWQRPVVPNRQAGILGAKPQQAHVAATPSSYA 275
            +      P  + P                  RPV       I G   +  H A    +  
Sbjct: 271  S------PQVSGP------------------RPVCQ-----ICG---RTGHTALKCYNRF 298

Query: 276  PTDIQAAMHSLS-LAPPDE---QWYMDTGATSHMTANGGNLTSYSNISNN--ITVGSGHN 329
              + QA + + S L   D+   +W+ D+ AT+H+T++   L S +    +  + VG G  
Sbjct: 299  DNNYQAEIQAFSTLRVSDDTGKEWHPDSAATAHVTSSTNGLQSATEYEGDDAVLVGDGTY 358

Query: 330  IPVIGCGNALVQNPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQ 389
            +P+   G+  +++    + LN VL  P + K+L+SV K   D    V FD     + D Q
Sbjct: 359  LPITHTGSTTIKSSNGKIPLNEVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLQ 418

Query: 390  TGMPLMRCNSSGDLYPLATRPYYPSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSI 449
            T   +        LY L  + +    +    AA + E+WH+RLGH     L  L  + +I
Sbjct: 419  TQKVVTTGPRRNGLYVLENQEFVALYSNRQCAA-TEEVWHHRLGHANSKALQHLQNSKAI 477

Query: 450  LCNKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIW-TSPILSSGGHHYYILF 508
              NK R +  C+ CQ+GK  +LPF  S S  L P D +H D+W  SP++S+ G  YY +F
Sbjct: 478  QINKSRTSPVCEPCQMGKSSRLPFLISDSRVLHPLDRIHCDLWGPSPVVSNQGLKYYAIF 537

Query: 509  LDDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQ 568
            +DD++ + W +PL NKS+  S+F+ F   ++ Q    IK FQ D G E+ ++       +
Sbjct: 538  VDDYSRYSWFYPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSE 597

Query: 569  NGMIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPT 628
            +G+  R SCP+T  QNG  ERK R +  +  ++L H+  P  FW  +   A Y++N LP+
Sbjct: 598  HGIHHRISCPYTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANYIINRLPS 657

Query: 629  KKLALQTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGY 688
              L   +P   L+ + P YS L+VFG  C+P +    +NK   RS  CVFLGY S ++GY
Sbjct: 658  SVLKNLSPYEALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYNSQYKGY 717

Query: 689  KCFELSSRKIIISRHVIFDENTFPFSN---SNIPESSCYNFLDTSDTPFPYHLFQHTSNL 745
            +CF   + K+ ISR+VIF+E+  PF     S +P+ S         TP     +QH    
Sbjct: 718  RCFYPPTGKVYISRNVIFNESELPFKEKYQSLVPQYS---------TPL-LQAWQHNKI- 766

Query: 746  PTNEPNSHDQPPTTTATPLTTPYSINTTTHQPTVAPSPQIQTSPQLTITPNTASPHQIPP 805
                  S    P       + P  +NT           +  T P+ T     +     P 
Sbjct: 767  ------SEISVPAAPVQLFSKPIDLNTYAGSQVT----EQLTDPEPTSNNEGSDEEVNPV 816

Query: 806  PNPLLANPPL---SPQMTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQDHNWKM 862
               + AN      S  MTTR++ GI KP     L TS  N   P      +A++   W  
Sbjct: 817  AEEIAANQEQVINSHAMTTRSKAGIQKPNTRYALITSRMNTAEPKTL--ASAMKHPGWNE 874

Query: 863  AMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQTG 922
            A+ +E + +    TW LVP   + NI+ S W+F+ K   DGS ++ KARLV  G +Q+ G
Sbjct: 875  AVHEEINRVHMLHTWSLVPPTDDMNILSSKWVFKTKLHPDGSIDKLKARLVAKGFDQEEG 934

Query: 923  VDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRDPQ 982
            VD  ETFSPVV+ ATIR VL ++ SK W + QLDV NAFLHG L E V+MYQP GF DPQ
Sbjct: 935  VDYLETFSPVVRTATIRLVLDVSTSKGWPIKQLDVSNAFLHGELQEPVFMYQPSGFIDPQ 994

Query: 983  HPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYV 1042
             P +VC L K++YGLKQAPRAW+  F++++   GF  S  D SLF+ H      Y+LLYV
Sbjct: 995  KPTHVCRLTKAIYGLKQAPRAWFDTFSNFLLDYGFVCSKSDPSLFVCHQDGKILYLLLYV 1054

Query: 1043 DDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISV-----------TRHSDDTKA 1091
            DDI+LT S  +L + ++  L + F+MKDLGP  YFLGI +           T ++ D   
Sbjct: 1055 DDILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFLGIQIEDYANGLFLHQTAYATDILQ 1114

Query: 1092 KLSGTSGNP----------------YHDPSEYRSLAGALQYLTFTRPDISYAVQQVCLFM 1135
            +   +  NP                + +P+ +RSLAG LQYLT TRPDI +AV  +C  M
Sbjct: 1115 QAGMSDCNPMPTPLPQQLDNLNSELFAEPTYFRSLAGKLQYLTITRPDIQFAVNFICQRM 1174

Query: 1136 HDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGYCVY 1195
            H P T     LKRI+RYIKGT   GL +  ++   L+ Y+D+D  GC +TR+ST+G+C+ 
Sbjct: 1175 HSPTTSDFGLLKRILRYIKGTIGMGLPIKRNSTLTLSAYSDSDHAGCKNTRRSTTGFCIL 1234

Query: 1196 LGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNV 1255
            LG NL+SWSAKRQPT+S SS EAEYR +     E  W+  LL +L  P    T VYCDN+
Sbjct: 1235 LGSNLISWSAKRQPTVSNSSTEAEYRALTYAAREITWISFLLRDLGIPQYLPTQVYCDNL 1294

Query: 1256 SAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLPLQLFDD 1315
            SAVYLS NP  H R+KH + D H++RE+VA G +   H+ + +Q+AD+FTK LP + F D
Sbjct: 1295 SAVYLSANPALHNRSKHFDTDYHYIREQVALGLIETQHISATFQLADVFTKSLPRRAFVD 1354

Query: 1316 FRDSLHIRQPP 1326
             R  L +   P
Sbjct: 1355 LRSKLGVSGSP 1365


>At1g53810 
          Length = 1522

 Score =  741 bits (1914), Expect = 0.0
 Identities = 467/1388 (33%), Positives = 693/1388 (49%), Gaps = 168/1388 (12%)

Query: 38   FDNKNSRALYLEQEFSKISMEQFSTASSYCQHIKSLSDQLANVGAPVSNERMVLQLVSGL 97
            F+  +S  L+  Q   +   ++ +T   + + +K + DQLA+VG+PV  +  +   ++GL
Sbjct: 114  FNRVSSSRLFELQRRLQTLEKKDNTMEVFLKDLKHICDQLASVGSPVPEKMKIFSALNGL 173

Query: 98   SEAYDTVGSQIRHSDTLPPFYKARSMVVLEETARAKRTAVTTANSTFLAAQEDNNSGNSP 157
               Y+ + + I +S    P       + L+E A   R       S         +   + 
Sbjct: 174  GREYEPIKTTIENSVDSNP------SLSLDEVASKLRGYDDRLQSYVTEPTISPHVAFNV 227

Query: 158  SHRPNRNNNSNNGSRGGRGGSGNNHGGRGRGRGGGRGGRSHNYQQGSWQQPQAPQHQWAY 217
            +H  +   ++NN       G G ++ G G+     RG   H  QQ S             
Sbjct: 228  THSDSGYYHNNNR------GKGRSNSGSGKSSFSTRGRGFH--QQIS------------- 266

Query: 218  PPYQYPSWNAPWQPWATPPCPYPTTGNWQRPVVPNRQAGILGAKPQQAHVAAT------- 270
                                  PT+G+         QAG  G   Q    A         
Sbjct: 267  ----------------------PTSGS---------QAGNSGLVCQICGKAGHHALKCWH 295

Query: 271  --PSSYAPTDIQAAMHSLSLAPPDE----QWYMDTGATSHMTANGGNLTSYSNI--SNNI 322
               +SY   D+  A+ ++ +    +    +W  D+ A++H+T N   L        S++I
Sbjct: 296  RFDNSYQHEDLPMALATMRITDVTDHHGHEWIPDSAASAHVTNNRHVLQQSQPYHGSDSI 355

Query: 323  TVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFG 382
             V  G+ +P+   G+  + +    + L  VL  P ++K+L+SV K T D   SVEFD   
Sbjct: 356  MVADGNFLPITHTGSGSIASSSGKIPLKEVLVCPDIVKSLLSVSKLTSDYPCSVEFDADS 415

Query: 383  FSVKDFQTGMPLMRCNSSGDLYPLATRPYYPSTTPSTFAALSNEIWHNRLGHPGVSILNS 442
              + D  T   L+   +   LY L   P       +   + S+E+WH RLGH    +L+ 
Sbjct: 416  VRINDKATKKLLVMGRNRDGLYSLE-EPKLQVLYSTRQNSASSEVWHRRLGHANAEVLHQ 474

Query: 443  LHRNNSILCNKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIW-TSPILSSGG 501
            L  + SI+         C++C LGK  +LPF  S  +   P + +H D+W  SP  S  G
Sbjct: 475  LASSKSIIIINKVVKTVCEACHLGKSTRLPFMLSTFNASRPLERIHCDLWGPSPTSSVQG 534

Query: 502  HHYYILFLDDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSH 561
              YY++F+D ++ F W +PL  KS   S F+ F   ++ Q    IK FQCD G E+ +S 
Sbjct: 535  FRYYVVFIDHYSRFTWFYPLKLKSDFFSTFVMFQKLVENQLGHKIKIFQCDGGGEFISSQ 594

Query: 562  FHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATY 621
            F +  + +G+    SCP+T  QNG  ERK R I  +  +++  + LP  +W  +   A +
Sbjct: 595  FLKHLQDHGIQQNMSCPYTPQQNGMAERKHRHIVELGLSMIFQSKLPLKYWLESFFTANF 654

Query: 622  LLNILPTKKLAL-QTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLG 680
            ++N+LPT  L   ++P   LY K+P YS L+VFGC C+P +      K   RS  CVFLG
Sbjct: 655  VINLLPTSSLDNNESPYQKLYGKAPEYSALRVFGCACYPTLRDYASTKFDPRSLKCVFLG 714

Query: 681  YPSNHRGYKCFELSSRKIIISRHVIFDENTFPFSNSNIPESSCYNFLDTSD-TPFPYHLF 739
            Y   ++GY+C    + +I ISRHV+FDENT PF        S Y+ L   D TP     F
Sbjct: 715  YNEKYKGYRCLYPPTGRIYISRHVVFDENTHPFE-------SIYSHLHPQDKTPLLEAWF 767

Query: 740  QHTSNLPTNEPNSHDQPPTTTATPLTT-----PYSINTTTHQPTVAPSPQ--------IQ 786
            +   ++   +P+    P ++   P TT     P S+   T  P  +            + 
Sbjct: 768  KSFHHVTPTQPDQSRYPVSSIPQPETTDLSAAPASVAAETAGPNASDDTSQDNETISVVS 827

Query: 787  TSPQLTITPNTAS---PHQIPP-----PNPLLANPPLSPQ-------------------- 818
             SP+ T   ++AS    +  P      P+P  ++P  SPQ                    
Sbjct: 828  GSPERTTGLDSASIGDSYHSPTADSSHPSPARSSPASSPQGSPIQMAPAQQVQAPVTNEH 887

Query: 819  -MTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQDHNWKMAMKDEYDALIDNKTW 877
             M TR + GI KP +   L T   +   P P     AL+   W  AM++E     + +TW
Sbjct: 888  AMVTRGKEGISKPNKRYVLLTHKVS--IPEPKTVTEALKHPGWNNAMQEEMGNCKETETW 945

Query: 878  DLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQTGVDCGETFSPVVKPAT 937
             LVP   N N++ S+W+FR K  ADGS ++ KARLV  G  Q+ G+D  ET+SPVV+  T
Sbjct: 946  TLVPYSPNMNVLGSMWVFRTKLHADGSLDKLKARLVAKGFKQEEGIDYLETYSPVVRTPT 1005

Query: 938  IRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRDPQHPDYVCLLKKSLYGL 997
            +R +L +A    W L Q+DVKNAFLHG+L ETVYM QP GF D   PD+VCLL KSLYGL
Sbjct: 1006 VRLILHVATVLKWELKQMDVKNAFLHGDLTETVYMRQPAGFVDKSKPDHVCLLHKSLYGL 1065

Query: 998  KQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYVDDIILTASSDTLRQS 1057
            KQ+PRAW+ RF++++   GF  S+ D SLF+Y S +D   +LLYVDD+++T ++      
Sbjct: 1066 KQSPRAWFDRFSNFLLEFGFICSLFDPSLFVYSSNNDVILLLLYVDDMVITGNNSQSLTH 1125

Query: 1058 IMSKLNSEFAMKDLGPLSYFLGISV-----------TRHSDDTKAKLSGTSGNP------ 1100
            +++ LN EF MKD+G + YFLGI +            ++++D     S  + +P      
Sbjct: 1126 LLAALNKEFRMKDMGQVHYFLGIQIQTYDGGLFMSQQKYAEDLLITASMANCSPMPTPLP 1185

Query: 1101 ------------YHDPSEYRSLAGALQYLTFTRPDISYAVQQVCLFMHDPKTQHMTALKR 1148
                        + DP+ +RSLAG LQYLT TRPDI +AV  VC  MH P       LKR
Sbjct: 1186 LQLDRVSNQDEVFSDPTYFRSLAGKLQYLTLTRPDIQFAVNFVCQKMHQPSVSDFNLLKR 1245

Query: 1149 IIRYIKGTSTHGLH----------LYPSTVDKLTTYTDADWGGCPDTRKSTSGYCVYLGD 1198
            I+RYIKGT + G+            Y S  D L+ Y+D+D+  C +TR+S  GYC ++G 
Sbjct: 1246 ILRYIKGTVSMGIQYNSNSSSVVSAYESDYD-LSAYSDSDYANCKETRRSVGGYCTFMGQ 1304

Query: 1199 NLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNVSAV 1258
            N++SWS+K+QPT+SRSS EAEYR ++   SE  W+ ++L E+   +     ++CDN+SAV
Sbjct: 1305 NIISWSSKKQPTVSRSSTEAEYRSLSETASEIKWMSSILREIGVSLPDTPELFCDNLSAV 1364

Query: 1259 YLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLPLQLFDDFRD 1318
            YL+ NP  H RTKH ++D H++RE+VA   + V H+P   Q+ADIFTK LP + F   R 
Sbjct: 1365 YLTANPAFHARTKHFDVDHHYIRERVALKTLVVKHIPGHLQLADIFTKSLPFEAFTRLRF 1424

Query: 1319 SLHIRQPP 1326
             L +  PP
Sbjct: 1425 KLGVDFPP 1432


>At4g28900 putative protein
          Length = 1415

 Score =  690 bits (1781), Expect = 0.0
 Identities = 407/1070 (38%), Positives = 583/1070 (54%), Gaps = 73/1070 (6%)

Query: 295  WYMDTGATSHMTANGGNLTSYSNIS--NNITVGSGHNIPVIGCGNALVQNPQYPLTLNNV 352
            W  D+GATSH+T +   L S    S  +++ VG+   +P+   G+A++ + Q  L L +V
Sbjct: 293  WVTDSGATSHITNSTSQLQSAQPYSGEDSVIVGNSDFLPITHIGSAVLTSNQGNLPLRDV 352

Query: 353  LHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPYY 412
            L  P + K+L+SV K T D    +EFD  G  VKD  T   L +     DLY L   P +
Sbjct: 353  LVCPNITKSLLSVSKLTSDYPCVIEFDSDGVIVKDKLTKQLLTKGTRHNDLY-LLENPKF 411

Query: 413  PSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSILCNKFRNNFFCQSCQLGKQIKLP 472
             +   S   A S+E+WH RLGHP   +L  L RN +I+ +K  ++  C +CQ+GK  KLP
Sbjct: 412  MACYSSRQQATSDEVWHMRLGHPNQDVLQQLLRNKAIVISKTSHSL-CDACQMGKICKLP 470

Query: 473  FYES--LSSTLLPFDIVHSDIW-TSPILSSGGHHYYILFLDDFTDFLWTFPLTNKSQAHS 529
            F  S  +SS LL  + VH D+W  +P++SS G  YY++F+D+++ F W +PL  KS   S
Sbjct: 471  FASSDFVSSRLL--ERVHCDLWGPAPVVSSQGFRYYVIFIDNYSRFTWFYPLRLKSDFFS 528

Query: 530  IFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNGKVER 589
            +FL F   ++ Q ++ I  FQCD G E+ ++ F     + G+    SCP+T  QNG  ER
Sbjct: 529  VFLTFQKMVENQCQQKIASFQCDGGGEFISNQFVSHLAECGIRQLISCPYTPQQNGIAER 588

Query: 590  KIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQ-TPTTILYQKSPSYS 648
            K R I  +  +++    +P   W  A   + +L N+LP+  L  Q +P  +L  K+P Y+
Sbjct: 589  KHRHITELGSSMMFQGKVPQFLWVEAFYTSNFLCNLLPSSVLKDQKSPYEVLMGKAPVYT 648

Query: 649  HLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIISRHVIFDE 708
             L+VFGC C+P +     NK   +S  CVF GY   ++GYKCF   + KI I+RHV+FDE
Sbjct: 649  SLRVFGCACYPNLRPYASNKFDPKSLLCVFTGYNEKYKGYKCFHPPTGKIYINRHVLFDE 708

Query: 709  NTFPFS----------NSNIPESSCYNFLDTSDTPFPYHL-FQHTSNLPTNEPNSHDQPP 757
            + F FS          NS +  +   NFL  S    P  L   +T+   ++E        
Sbjct: 709  SKFLFSDIYSDKVSGTNSTLVSAWQSNFLPKSIPATPEVLDISNTAASFSDEQGEFSGAV 768

Query: 758  T-----TTATPLTTPYSINTTTHQPTVAPSPQIQTSPQLTITPNTASPHQIPPPNPLLAN 812
                   TA   + P   +  +   T   SPQ +T      + N A   ++   +    +
Sbjct: 769  GGGGCGCTADLDSVPIGNSLPSSPVTQQNSPQPETPISSAGSGNDAEDSELSENSENSES 828

Query: 813  PPLSPQMT----------------TRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQ 856
               S   T                TR++ GIFKP     + T  SN   P+P     AL+
Sbjct: 829  SVFSEATTETEAADNTNDQSHPMITRSKSGIFKPNPKYAMFTVKSNY--PVPKTVKTALK 886

Query: 857  DHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNG 916
            D  W  AM +EYD+  +  TWDLVP  S    +   W+F+ K KADG+ +R KARLV  G
Sbjct: 887  DPGWTDAMGEEYDSFEETHTWDLVPPDSFITPLGCRWVFKTKLKADGTLDRLKARLVAKG 946

Query: 917  SNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPP 976
              Q+ GVD  ET+SPVV+ AT+RT+L +A    W + QLDVKNAFLHG+L ETVYMYQPP
Sbjct: 947  YEQEEGVDYMETYSPVVRTATVRTILHVATINKWEIKQLDVKNAFLHGDLKETVYMYQPP 1006

Query: 977  GFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTA 1036
            GF +   PDYVC L K++YGLKQAPRAW+ +F+ ++   GF  +  D SLF++  G D  
Sbjct: 1007 GFENQDRPDYVCKLNKAIYGLKQAPRAWFDKFSTFLLEFGFICTYSDPSLFVFLKGRDLM 1066

Query: 1037 YILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTRHSDDTKAKLSGT 1096
            ++LLY+DD++LT ++      ++        M D  P+   L + +         K+ G 
Sbjct: 1067 FLLLYMDDMLLTGNNKKYAMDLLVAA----GMADCAPMPTPLPLQLD--------KVPGQ 1114

Query: 1097 SGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGT 1156
                + DP+ +RSL                AV  VC  MH P       LKR++RY+KG 
Sbjct: 1115 Q-ESFADPTYFRSL----------------AVNLVCQKMHSPTVADFNLLKRVLRYLKGK 1157

Query: 1157 STHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSA 1216
               GL+L+ +T   L  Y+D+DW  C +TR+S  G+C +LG N++SWSAKR PT+SRSS 
Sbjct: 1158 VQMGLNLHNNTDITLRAYSDSDWANCKETRRSVGGFCTFLGTNIISWSAKRHPTVSRSST 1217

Query: 1217 EAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMD 1276
            EAEYR ++   +E  W+ +LL E+         +YCDN+SAVYL+ NP  H R+K  ++D
Sbjct: 1218 EAEYRTLSIAATEVKWISSLLREIGIYQPAPPELYCDNLSAVYLTANPAMHNRSKAFDVD 1277

Query: 1277 IHFVREKVARGQVRVMHVPSRYQIADIFTKGLPLQLFDDFRDSLHIRQPP 1326
             H+VRE+VA G + V HVP+ +Q+ADIFTK LP + F D R  L +  PP
Sbjct: 1278 FHYVRERVALGALVVKHVPASHQLADIFTKSLPQRPFFDLRYKLGVVLPP 1327



 Score = 37.4 bits (85), Expect = 0.058
 Identities = 22/74 (29%), Positives = 38/74 (50%), Gaps = 2/74 (2%)

Query: 43  SRALYLEQEFSKISMEQFSTASSYCQHIKSLSDQLANVGAPVSNERMVLQLVSGLSEAYD 102
           SR   L++  + +S  + S    Y   +K + DQL ++G PV     +  +++GL + Y 
Sbjct: 122 SRKSDLQRRLNPVSKNEKSMLE-YLNCVKQICDQLDSIGCPVPENEKIFGVLNGLGQEYM 180

Query: 103 TVGSQIRHS-DTLP 115
            V + I+ S DT P
Sbjct: 181 LVSTMIKGSMDTYP 194


>At4g27210 putative protein
          Length = 1318

 Score =  675 bits (1741), Expect = 0.0
 Identities = 409/1104 (37%), Positives = 577/1104 (52%), Gaps = 129/1104 (11%)

Query: 294  QWYMDTGATSHMTANGGNLTSYSNI--SNNITVGSGHNIPVIGCGNALVQNPQYPLTLNN 351
            +W  D+ AT+H+T +  +L        ++ I V  G+ +P+   G+  + +    + L +
Sbjct: 176  EWLPDSAATAHVTNSPRSLQQSQPYHGTDAIMVDDGNYLPITHTGSTNLASSSGTVPLTD 235

Query: 352  VLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPY 411
            VL  P + K+L+S+ K T D   +VEF+  G  V D  T   L+  ++   LY L     
Sbjct: 236  VLVCPSITKSLLSMSKLTQDFPCTVEFEYDGVRVNDKATKKLLLMGSNRDGLYCLKDDKQ 295

Query: 412  YPSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSILCNKFRNNFFCQSCQLGKQIKL 471
            + +   +   + S+E+WH RLGHP   IL  L R                          
Sbjct: 296  FQAFFSTRQRSASDEVWHRRLGHPHPQILQPLER-------------------------- 329

Query: 472  PFYESLSSTLLPFDIVHSDIW-TSPILSSGGHHYYILFLDDFTDFLWTFPLTNKSQAHSI 530
                           VH D+W  + I S  G  YY +F+D ++ F W +PL  KS  ++I
Sbjct: 330  ---------------VHCDLWGPTTITSVQGFRYYAVFIDHYSRFSWIYPLKLKSDFYNI 374

Query: 531  FLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNGKVERK 590
            FL F   ++ Q  + I  FQCD G E+ +  F Q  + +G+  + SCPHT  QNG  ERK
Sbjct: 375  FLAFHKLVENQLSQKISVFQCDGGGEFVSHKFLQHLQSHGIQQQLSCPHTPQQNGLAERK 434

Query: 591  IRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQ-TPTTILYQKSPSYSH 649
             R +  +  ++L  + +P  FW  A   A +L+N+LPT  L    +P   LY K P Y+ 
Sbjct: 435  HRHLVELGLSMLFQSHVPHKFWVEAFFTANFLINLLPTSALKESISPYEKLYDKKPDYTS 494

Query: 650  LKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIISRHVIFDEN 709
            L+ FG  CFP +     NK    S  CVFLGY   ++GY+C    + ++ ISRHVIFDE+
Sbjct: 495  LRSFGSACFPTLRDYAENKFNPCSLKCVFLGYNEKYKGYRCLYPPTGRLYISRHVIFDES 554

Query: 710  TFPFSNS--------NIPESSCYNFLDTSDTPFPYHLFQHTSNLPTNEP---NSHDQPPT 758
             +PFS++          P  + +  L +SD+P P      TS  P++      S D PP 
Sbjct: 555  VYPFSHTYKHLHPQPRTPLLAAW--LRSSDSPAP-----STSTSPSSRSPLFTSADFPPL 607

Query: 759  ----TTATPLTTPYSI-----NTTTHQPT-----------------VAPSPQIQTSPQLT 792
                T   P   P S      N TT Q                    + S Q  +  + T
Sbjct: 608  PQRKTPLLPTLVPISSVSHASNITTQQSPDFDSERTTDFDSASIGDSSHSSQAGSDSEET 667

Query: 793  ITPNTASPHQIPPPNPLLANPPLSPQMTTRAQHGIFKPRQLLNLHTSSSNQIS-PLPTNP 851
            I   + + HQ        A+  + P M TRA+ GI KP      +   S+++S P P   
Sbjct: 668  IQQASVNVHQTH------ASTNVHP-MVTRAKVGISKPNPR---YVFLSHKVSYPEPKTV 717

Query: 852  INALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKAR 911
              AL+   W  AM +E     + +TW LVP  S+ +++ S W+FR K  ADG+  + KAR
Sbjct: 718  TAALKHPGWTGAMTEEIGNCSETQTWSLVPYKSDMHVLGSKWVFRTKLHADGTLNKLKAR 777

Query: 912  LVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVY 971
            +V  G  Q+ G+D  ET+SPVV+  T+R VL +A + +W + Q+DVKNAFLHG+L ETVY
Sbjct: 778  IVAKGFLQEEGIDYLETYSPVVRTPTVRLVLHLATALNWDIKQMDVKNAFLHGDLKETVY 837

Query: 972  MYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHS 1031
            M QP GF DP  PD+VCLL KS+YGLKQ+PRAW+ +F+ ++   GF  S  D SLFIY  
Sbjct: 838  MTQPAGFVDPSKPDHVCLLHKSIYGLKQSPRAWFDKFSTFLLEFGFFCSKSDPSLFIYAH 897

Query: 1032 GDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTR------- 1084
             ++   +LLYVDD+++T +S     S+++ LN EF M D+G L YFLGI V R       
Sbjct: 898  NNNLILLLLYVDDMVITGNSSQTLTSLLAALNKEFRMTDMGQLHYFLGIQVQRQQNGLFM 957

Query: 1085 ----HSDDTKAKLSGTSGNP------------------YHDPSEYRSLAGALQYLTFTRP 1122
                +++D     S     P                  + DP+ +RS+AG LQYLT TRP
Sbjct: 958  SQQKYAEDLLIAASMEHCTPLPTPLPVQLDRVPHQEELFSDPTYFRSIAGKLQYLTLTRP 1017

Query: 1123 DISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGC 1182
            DI +AV  VC  MH P       LKRI+RYIKGT T G+     +   L  Y+D+DWG C
Sbjct: 1018 DIQFAVNFVCQKMHQPTISDFHLLKRILRYIKGTITMGISYSRDSPTLLQAYSDSDWGNC 1077

Query: 1183 PDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQC 1242
              TR+S  G C ++G NLVSWS+K+ PT+SRSS EAEY+ +++  SE  WL  LL EL+ 
Sbjct: 1078 KQTRRSVGGLCTFMGTNLVSWSSKKHPTVSRSSTEAEYKSLSDAASEILWLSTLLRELRI 1137

Query: 1243 PVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIAD 1302
            P+     ++CDN+SAVYL+ NP  H RTKH ++D HFVRE+VA   + V H+P   QIAD
Sbjct: 1138 PLPDTPELFCDNLSAVYLTANPAFHARTKHFDIDFHFVRERVALKALVVKHIPGSEQIAD 1197

Query: 1303 IFTKGLPLQLFDDFRDSLHIRQPP 1326
            IFTK LP + F   R  L +   P
Sbjct: 1198 IFTKSLPYEAFIHLRGKLGVTLSP 1221



 Score = 42.7 bits (99), Expect = 0.001
 Identities = 31/115 (26%), Positives = 55/115 (46%), Gaps = 15/115 (13%)

Query: 44  RALYLEQEFSKISMEQFSTASSYCQHIKSLSDQLANVGAPVSNERMVLQLVSGLSEAYDT 103
           R   L++    +S     T  +Y   +K++ DQLA+VG+PV+ +  +   ++GL   Y+ 
Sbjct: 46  RLFELQRRLQNVSKRD-KTMDAYLNDLKNICDQLASVGSPVTEKMKIFAALNGLGREYEP 104

Query: 104 VGSQIRHS-DTLP-----------PFYKARSMVVLEETARAKRTA--VTTANSTF 144
           + + I +S DT P             Y  R    LEET  +   A  +TT++ ++
Sbjct: 105 IKTTIENSMDTQPGPSLENVIPKLTGYDDRLQGYLEETTISPYVAFNITTSDDSY 159


>At2g20460 putative retroelement pol polyprotein
          Length = 1461

 Score =  643 bits (1658), Expect = 0.0
 Identities = 382/1077 (35%), Positives = 576/1077 (53%), Gaps = 95/1077 (8%)

Query: 270  TPSSYAPTDIQAAMHSLSLAPPDEQWYMDTGATSHMTANGGNL-TSYSNISNNITVGSGH 328
            +PS+Y    I A  H+ SL+   + W +D+GAT H++ +     T  ++I + + + +G 
Sbjct: 420  SPSTYCFIGILAVSHN-SLS--SDTWVIDSGATHHVSHDRKLFQTLDTSIVSFVNLPTGP 476

Query: 329  NIPVIGCGNALVQNPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDF 388
            N+ + G G  L+      + L NVL  P+   NL+S+   T D    V FDP    ++D 
Sbjct: 477  NVRISGVGTVLINKD---IILQNVLFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDL 533

Query: 389  QTGMPLMRCNSSGDLYPLATRPYYPSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNS 448
              G+ L      G+LY L T+    S   S  A +   +WH RLGHP  S L+SL     
Sbjct: 534  TKGLTLGEGKRIGNLYVLDTQ----SPAISVNAVVDVSVWHKRLGHPSFSRLDSLSEVLG 589

Query: 449  ILCNKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIWTS-PILSSGGHHYYIL 507
               +K + + +C  C L KQ KL F  + +     F+++H D+W    + +  G+ Y++ 
Sbjct: 590  TTRHKNKKSAYCHVCHLAKQKKLSFPSANNICNSTFELLHIDVWGPFSVETVEGYKYFLT 649

Query: 508  FLDDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCK 567
             +DD +   W + L +KS   ++F  F + ++ Q++  +K  + DN KE     F +F K
Sbjct: 650  IVDDHSRATWIYLLKSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAKELA---FTEFYK 706

Query: 568  QNGMIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILP 627
              G++   SCP T  QN  VERK + I N+ R L+  +++   +W   +  A +L+N  P
Sbjct: 707  AKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTP 766

Query: 628  TKKLALQTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRG 687
            +  L+ +TP  +L  K P YS LK FGCLC+    S  R+K   RS  CVFLGYP   +G
Sbjct: 767  SALLSNKTPFEVLTGKLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKG 826

Query: 688  YKCFELSSRKIIISRHVIFDENTFPFSNSNIPESSCYNFLDTSDTPFPYHLFQHTSNLPT 747
            YK  +L S  + ISR+V F E  FP ++S                               
Sbjct: 827  YKLLDLESNVVHISRNVEFHEELFPLASS------------------------------- 855

Query: 748  NEPNSHDQPPTTTATPLTTPYSINTTTHQPTV-APSPQIQTSPQLTITPNTASPHQIPPP 806
                   Q   TTA+ + TP    ++ +  T   PSPQI  S Q++    T  P  +   
Sbjct: 856  -------QQSATTASDVFTPMDPLSSGNSITSHLPSPQISPSTQISKRRITKFPAHLQDY 908

Query: 807  NPLLANPPLSPQMTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQDHNWKMAMKD 866
            +    N   S  +++   +    P  +L ++  S     P+P +   A     W  A+  
Sbjct: 909  HCYFVNKDDSHPISSSLSYSQISPSHMLYINNISK---IPIPQSYHEAKDSKEWCGAIDQ 965

Query: 867  EYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQTGVDCG 926
            E  A+    TW++   P     +   W+F  K  ADGS ER+KAR+V  G  Q+ G+D  
Sbjct: 966  EIGAMERTDTWEITSLPPGKKAVGCKWVFTVKFHADGSLERFKARIVAKGYTQKEGLDYT 1025

Query: 927  ETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRDPQ---- 982
            ETFSPV K AT++ +L ++ SK W L+QLD+ NAFL+G+L ET+YM  P G+ D +    
Sbjct: 1026 ETFSPVAKMATVKLLLKVSASKKWYLNQLDISNAFLNGDLEETIYMKLPDGYADIKGTSL 1085

Query: 983  HPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYV 1042
             P+ VC LKKS+YGLKQA R W+ +F++ +  LGF     DH+LF+   G +   +L+YV
Sbjct: 1086 PPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGFEKQHGDHTLFVRCIGSEFIVLLVYV 1145

Query: 1043 DDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTRHSD--------------- 1087
            DDI++ ++++   QS+   L + F +++LGPL YFLG+ V R S+               
Sbjct: 1146 DDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLEVARTSEGISLSQRKYALELLT 1205

Query: 1088 -----DTK---------AKLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQVCL 1133
                 D K          +LS   G    D   YR L G L YLT TRPDI++AV ++C 
Sbjct: 1206 SADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGKLMYLTITRPDITFAVNKLCQ 1265

Query: 1134 FMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTT--YTDADWGGCPDTRKSTSG 1191
            F   P+T H+ A+ ++++YIKGT   G  L+ S  D LT   YTDADWG CPD+R+ST+G
Sbjct: 1266 FSSAPRTAHLAAVYKVLQYIKGTVGQG--LFYSAEDDLTLKGYTDADWGTCPDSRRSTTG 1323

Query: 1192 YCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVY 1251
            + +++G +L+SW +K+QPT+SRSSAEAEYR +A    E  WL  LLL L+   +   ++Y
Sbjct: 1324 FTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASCEMAWLSTLLLALRVH-SGVPILY 1382

Query: 1252 CDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGL 1308
             D+ +AVY++ NP+ H+RTKHIE+D H VREK+  GQ++++HV ++ Q+ADI TK L
Sbjct: 1383 SDSTAAVYIATNPVFHERTKHIEIDCHTVREKLDNGQLKLLHVKTKDQVADILTKPL 1439


>At4g14460 retrovirus-related like polyprotein
          Length = 1489

 Score =  587 bits (1513), Expect = e-167
 Identities = 377/1144 (32%), Positives = 558/1144 (47%), Gaps = 131/1144 (11%)

Query: 217  YPPYQYPSWNAPWQPWATPPCPYPTTGNWQRPVVPNRQAGILGAKPQQAHVAATPSS--- 273
            + P Q     + +Q     P P  ++ N   P+    + G +        +   PS+   
Sbjct: 399  FTPQQIEQMISQFQAQVQVPEPAASSSN-PSPLATVSEHGFMALTSTSGTIIPFPSTSLK 457

Query: 274  YAPTDIQAAMHSLSLAP---PDEQWYMDTGATSHMTANGGNLTSYSNISNNITVGSGHNI 330
            Y   D++   H+LS      P + W +D+GA+SH+ ++        ++S  + +      
Sbjct: 458  YENNDLKFQNHTLSALQKFLPSDAWIIDSGASSHVCSDLAMFRELKSVSGTVHITQ---- 513

Query: 331  PVIGCGNALVQNPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQT 390
                            L L+NVLH P    NL+SV         S  F      +++   
Sbjct: 514  ---------------KLILHNVLHVPDFKFNLMSVSSLVKTISCSAHFYVDCCLIQELSQ 558

Query: 391  GMPLMRCNSSGDLYPLATRPYYPST-TPS----TFAALSN-EIWHNRLGHPGVSILNSLH 444
            G+ + R     +LY L T    PST TP+    T + L++  +WH RLGHP   +L  L 
Sbjct: 559  GLMIGRGRLYHNLYILETENTSPSTSTPAACLFTGSVLNDGHLWHQRLGHPSSVVLQKLK 618

Query: 445  RNNSILCNKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIWTS-PILSSGGHH 503
            R   I  N   +N                         PFD+VH DIW    I S  G  
Sbjct: 619  RLAYISHNNLASN-------------------------PFDLVHLDIWGPFSIESIEGFR 653

Query: 504  YYILFLDDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFH 563
            Y++  +DD T   W + L NK    S+F +F   + TQF   IK  + DN  E     F 
Sbjct: 654  YFLTVVDDCTRTTWVYMLRNKKDVSSVFPEFIKLVSTQFNAKIKAIRSDNAPELG---FT 710

Query: 564  QFCKQNGMIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLL 623
            +  K++GM+  FSC +T  QN  VERK + I N+ R LL  +++P  +W   +  A +L+
Sbjct: 711  EIVKEHGMLHHFSCAYTPQQNSVVERKHQHILNVARALLFQSNIPMQYWSDCVTTAVFLI 770

Query: 624  NILPTKKLALQTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPS 683
            N LP+  L  ++P  ++  K P YS LK FGCLCF    +  R K   R+  CVFLGYPS
Sbjct: 771  NRLPSPLLNNKSPYELILNKQPDYSLLKNFGCLCFVSTNAHERTKFTPRARACVFLGYPS 830

Query: 684  NHRGYKCFELSSRKIIISRHVIFDENTFPFSNSNIPESSCYNFLDTS-DTPFPYH----- 737
             ++GYK  +L S  + +SR+V+F E+ FPF  S +   +   F ++    P P H     
Sbjct: 831  GYKGYKVLDLESHSVTVSRNVVFKEHVFPFKTSELLNKAVDMFPNSILPLPAPLHFVETM 890

Query: 738  -LFQHTSNLPTNEPN---SHDQPPTTTATPLTTPYSINTTTHQPTVAPSPQIQTSPQLTI 793
             L    S +PT   +    +    +++A P   P S NT T Q   + +  I  S + T 
Sbjct: 891  PLIDEDSLIPTTTDSRTADNHASSSSSALPSIIPPSSNTET-QDIDSNAVPITRSKRTTR 949

Query: 794  TPNTASPHQ---------IPPPNPLLANPPLSPQMTTRAQHGIFKPRQLLNLHTSSSNQI 844
             P+  S +          +PP +  +   PL P++ T +      P  +  +   S ++ 
Sbjct: 950  APSYLSEYHCSLVPSISTLPPTDSSIPIHPL-PEIFTASSPKKTTPYPISTV--VSYDKY 1006

Query: 845  SPL-------------PTNPINALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRS 891
            +PL             P     A++   W     +E  A+  NKTW +   P + N++  
Sbjct: 1007 TPLCQSYIFAYNTETEPKTFSQAMKSEKWIRVAVEELQAMELNKTWSVESLPPDKNVVGC 1066

Query: 892  LWIFRHKKKADGSFERYKARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWC 951
             W+F  K   DG+ ERYKARLV  G  QQ G+D  +TFSPV K  + + +L +A    W 
Sbjct: 1067 KWVFTIKYNPDGTVERYKARLVAQGFTQQEGIDFLDTFSPVAKLTSAKMMLGLAAITGWT 1126

Query: 952  LHQLDVKNAFLHGNLNETVYMYQPPGFRDPQH----PDYVCLLKKSLYGLKQAPRAWYQR 1007
            L Q+DV +AFLHG+L+E ++M  P G+  P      P+ VC L KS+YGLKQA R WY+R
Sbjct: 1127 LTQMDVSDAFLHGDLDEEIFMSLPQGYTPPAGTILPPNPVCRLLKSIYGLKQASRQWYKR 1186

Query: 1008 FTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFA 1067
            F                              L+Y+DDI++ +++D   +++ + L SEF 
Sbjct: 1187 FVA---------------------------ALVYIDDIMIASNNDAEVENLKALLRSEFK 1219

Query: 1068 MKDLGPLSYFLGISVTRHSD---DTKAKLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDI 1124
            +KDLGP  +FLG+   + S    D    L    G P  +P+ YR L G L YLT TRPDI
Sbjct: 1220 IKDLGPARFFLGLLGCKPSSIPMDPTLHLVRDMGTPLPNPTAYRKLIGRLLYLTITRPDI 1279

Query: 1125 SYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPD 1184
            +YAV Q+  F+  P   H+ A  +++RYIK     GL         L  ++DADW  C D
Sbjct: 1280 TYAVHQLSQFISAPSDIHLQAAHKVLRYIKANPGQGLMYSADYEICLNGFSDADWAACKD 1339

Query: 1185 TRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPV 1244
            TR+S SG+C+YLG +L+SW +K+Q   SRSS E+EYR +A    E  WL+ LL +L  P+
Sbjct: 1340 TRRSISGFCIYLGTSLISWKSKKQAVASRSSTESEYRSMAQATCEIIWLQQLLKDLHIPL 1399

Query: 1245 TKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIF 1304
            T    ++CDN SA++ S NP+ H+RTKHIE+D H VR+++  G ++ +HVP+  Q ADI 
Sbjct: 1400 TCPAKLFCDNKSALHSSLNPVFHERTKHIEIDCHTVRDQIKAGNLKALHVPTENQHADIL 1459

Query: 1305 TKGL 1308
            TK L
Sbjct: 1460 TKAL 1463


>At2g13940 putative retroelement pol polyprotein
          Length = 1501

 Score =  586 bits (1511), Expect = e-167
 Identities = 370/1095 (33%), Positives = 548/1095 (49%), Gaps = 100/1095 (9%)

Query: 297  MDTGATSHMTANGGNLTSYSNISN----NITVGSGHNIPVIGCGNALVQNPQYPLTLNNV 352
            +D+GA+ HMT   G L+S +N+       +    G     +  G   + N    ++L NV
Sbjct: 403  LDSGASHHMT---GTLSSLTNVVPVPPCPVGFADGSKAFALSVGVLTLSNT---VSLTNV 456

Query: 353  LHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPYY 412
            L  P L   L+SV K     +    F      ++D  +   +      G +Y      Y 
Sbjct: 457  LFVPSLNCTLISVSKLLKQTQCLATFTDTLCFLQDRSSKTLIGSGEERGGVY------YL 510

Query: 413  PSTTPSTFAALSNE----IWHNRLGHPGVSILNSLHRNNSILCNKFRNNFFCQSCQLGKQ 468
               TP+     + +    +WH RLGHP  S+L+SL   +        ++  C  C   KQ
Sbjct: 511  TDVTPAKIHTANVDSDQALWHQRLGHPSFSVLSSLPLFSKTSSTVTSHS--CDVCFRAKQ 568

Query: 469  IKLPFYESLSSTLLPFDIVHSDIWTS-PILSSGGHHYYILFLDDFTDFLWTFPLTNKSQA 527
             +  F ES++ T   F ++H D+W    + +S G  Y++  +DD++  +WT+ L  KS+ 
Sbjct: 569  TREVFPESINKTEECFSLIHCDVWGPYRVPASCGAVYFLTIVDDYSRAVWTYLLLEKSEV 628

Query: 528  HSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNGKV 587
              +   F  + + QF + +K  + DNG E+       + ++NG+I + SC  T  QNG+V
Sbjct: 629  RQVLTNFLKYAEKQFGKTVKMVRSDNGTEF--MCLSSYFRENGIIHQTSCVGTPQQNGRV 686

Query: 588  ERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQTPTTILYQKSPSY 647
            ERK R I N+ R LL  ASLP  FW  ++  A YL+N  P+  L+ +TP  +L+   P Y
Sbjct: 687  ERKHRHILNVARALLFQASLPIKFWGESILTAAYLINRTPSSILSGRTPYEVLHGSKPVY 746

Query: 648  SHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIISRHVIFD 707
            S L+VFG  C+    +  ++K   RS  C+F+GYP   +G+K +++   + ++SR VIF 
Sbjct: 747  SQLRVFGSACYVHRVTRDKDKFGQRSRSCIFVGYPFGKKGWKVYDIERNEFLVSRDVIFR 806

Query: 708  ENTFPFSNSN-------------------IPESSCYNFLDTSDTPFPYHLFQHT------ 742
            E  FP++  N                   IP       +D+ +T                
Sbjct: 807  EEVFPYAGVNSSTLASTSLPTVSEDDDWAIPPLEVRGSIDSVETERVVCTTDEVVLDTSV 866

Query: 743  --SNLPTNEPNSHDQPPTT--TATPLTTPYSINTTTHQPTVAP----SPQIQTSPQLTIT 794
              S +P  E    D PP++  + +P  +P +  T    P  +P     P+ + S + T  
Sbjct: 867  SDSEIPNQEFVPDDTPPSSPLSVSPSGSPNTPTTPIVVPVASPIPVSPPKQRKSKRATHP 926

Query: 795  PNTASPHQIP----PPNPLLANPPLSPQMTTRAQHGIFKPRQLLNLHTSSSNQISPL--- 847
            P   + + +      P+ + A P    Q +T     +F     ++    SS+  + L   
Sbjct: 927  PPKLNDYVLYNAMYTPSSIHALPADPSQSSTVPGKSLFPLTDYVSDAAFSSSHRAYLAAI 986

Query: 848  -----PTNPINALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKAD 902
                 P +   A+Q   W  AM  E DAL  NKTWD+V  P     I S W+F+ K  +D
Sbjct: 987  TDNVEPKHFKEAVQIKVWNDAMFTEVDALEINKTWDIVDLPPGKVAIGSQWVFKTKYNSD 1046

Query: 903  GSFERYKARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFL 962
            G+ ERYKARLV  G+ Q  G D  ETF+PVV+  T+RT+L    +  W ++Q+DV NAFL
Sbjct: 1047 GTVERYKARLVVQGNKQVEGEDYKETFAPVVRMTTVRTLLRNVAANQWEVYQMDVHNAFL 1106

Query: 963  HGNLNETVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVC 1022
            HG+L E VYM  PPGFR   HPD VC L+KSLYGLKQAPR W+++ +D +   GF  S  
Sbjct: 1107 HGDLEEEVYMKLPPGFRH-SHPDKVCRLRKSLYGLKQAPRCWFKKLSDSLLRFGFVQSYE 1165

Query: 1023 DHSLFIYHSGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISV 1082
            D+SLF Y   +    +L+YVDD+++  +   + Q     L+  F+MKDLG L YFLGI V
Sbjct: 1166 DYSLFSYTRNNIELRVLIYVDDLLICGNDGYMLQKFKDYLSRCFSMKDLGKLKYFLGIEV 1225

Query: 1083 TRHSD-----------DTKAKLSGTSGNPYH------------------DPSEYRSLAGA 1113
            +R  +           D  A        P H                  DP  YR L G 
Sbjct: 1226 SRGPEGIFLSQRKYALDVIADSGNLGSRPAHTPLEQNHHLASDDGPLLSDPKPYRRLVGR 1285

Query: 1114 LQYLTFTRPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTT 1173
            L YL  TRP++SY+V  +  FM +P+  H  A  R++RY+KG+   G+ L       L  
Sbjct: 1286 LLYLLHTRPELSYSVHVLAQFMQNPREAHFDAALRVVRYLKGSPGQGILLNADPDLTLEV 1345

Query: 1174 YTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWL 1233
            Y D+DW  CP TR+S S Y V LG + +SW  K+Q T+S SSAEAEYR ++  + E  WL
Sbjct: 1346 YCDSDWQSCPLTRRSISAYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAMSYALKEIKWL 1405

Query: 1234 RNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMH 1293
            R LL EL    +    +YCD+ +A++++ NP+ H+RTKHIE D H VR+ V  G +   H
Sbjct: 1406 RKLLKELGIEQSTPARLYCDSKAAIHIAANPVFHERTKHIESDCHSVRDAVRDGIITTQH 1465

Query: 1294 VPSRYQIADIFTKGL 1308
            V +  Q+AD+FTK L
Sbjct: 1466 VRTTEQLADVFTKAL 1480



 Score = 30.4 bits (67), Expect = 7.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 173 GGRGGSGNNHGGRGRGRGGGRG 194
           GGRG +G   GGRG   G G+G
Sbjct: 324 GGRGSNGRGRGGRGSNGGRGQG 345


>At3g61330 copia-type polyprotein
          Length = 1352

 Score =  585 bits (1509), Expect = e-167
 Identities = 404/1330 (30%), Positives = 632/1330 (47%), Gaps = 145/1330 (10%)

Query: 41   KNSRALYLEQEFSKISMEQFSTASSYCQHIKSLSDQLANVGAPVSNERMVLQLVSGLSEA 100
            K  R   L  EF  + M++    S Y   + ++++ L   G  + + R++ +++  L   
Sbjct: 109  KKVRLQTLRGEFEALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLK 168

Query: 101  YDTVGSQIRHSDTLPPFYKARSMVVLEETARAKRTAVTTANSTFLAAQEDNNSGNSPSHR 160
            ++ +                  + V+EET   +   +     +  A +E        + +
Sbjct: 169  FEHI------------------VTVIEETKDLEAMTIEQLLGSLQAYEEKKKKKEDIAEQ 210

Query: 161  P--NRNNNSNNGSRGGRGGSGNNHGGRGRGRGG---GRGGRSHNYQQGSWQQPQAPQHQW 215
                +     NG    R G G     RGRGRGG   GRG R H        +  +     
Sbjct: 211  VLNMQITKEENGQSYQRRGGGQV---RGRGRGGYGNGRGWRPHEDNTNQRGENSSRGRGK 267

Query: 216  AYPPYQYPS-----WNAPWQPWATPPCPYPTTGNWQRPVVPNRQAGILGAKPQQAHVAAT 270
             +P  +Y       +N          C  P+   ++       +A  +  K Q+  +   
Sbjct: 268  GHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEE------KAHYVEEKIQEEDMLLM 321

Query: 271  PSSYAPTDIQAAMHSLSLAPPDEQWYMDTGATSHMTANGGNLTSYS-NISNNITVGSGHN 329
             S     D Q   H         +WY+D+GA++HM            ++  N+ +G    
Sbjct: 322  ASY--KKDEQKENH---------KWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESK 370

Query: 330  IPVIGCGNALVQ--NPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKD 387
            + V G GN L++  N  +   ++NV + P +  N++S+ +  ++    +       S++D
Sbjct: 371  MEVKGKGNILIRLKNGDHQF-ISNVYYIPSMKTNILSLGQL-LEKGYDIRLKDNNLSIRD 428

Query: 388  FQTGMPLMRCNSSGDLYPLATRPYYPSTTPSTFAALSNEIWHNRLGH---PGVSILNSLH 444
             ++ +      S   ++ L  R          +   S  +WH R GH    G+ +L+   
Sbjct: 429  QESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEES-WLWHLRFGHLNFGGLELLSRKE 487

Query: 445  RNNSILCNKFRNNFFCQSCQLGKQIKLPF-YESLSSTLLPFDIVHSDIWTSPIL--SSGG 501
                + C    N   C+ C LGKQ K+ F  ES S    P +++H+D+   PI   S G 
Sbjct: 488  MVRGLPCINHPNQV-CEGCLLGKQFKMSFPKESSSRAQKPLELIHTDV-CGPIKPKSLGK 545

Query: 502  HHYYILFLDDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSH 561
             +Y++LF+DDF+   W + L  KS+   IF +F  H++ +    IK  + D G E+ +  
Sbjct: 546  SNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKE 605

Query: 562  FHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATY 621
            F ++C+ NG+  + + P +  QNG VERK RTI  + R++L    LP   W  A+  A Y
Sbjct: 606  FLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVY 665

Query: 622  LLNILPTKKLALQTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGY 681
            LLN  PTK ++ +TP      + P  SHL+VFG +    +P   R+KL  +S   +F+GY
Sbjct: 666  LLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGY 725

Query: 682  PSNHRGYKCFELSSRKIIISRHVIFDENTFPFSNSNIPESSCYNFLDTSDTPFPYHLFQH 741
             +N +GYK +   ++K IISR+++FDE      NSN  +   YNF       FP+  F+ 
Sbjct: 726  DNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEED---YNF-------FPH--FEE 773

Query: 742  TSNLPTNEPNSHDQPPTTTATPLTTPYSINTTTHQPTVAPSPQIQTSPQLTITPNTASPH 801
                PT E    ++P        TTP         PT   S QI+ S     TP   S  
Sbjct: 774  DEPEPTREEPPSEEP--------TTP---------PTSPTSSQIEESSSER-TPRFRSIQ 815

Query: 802  QIPPPNPLLANPPLSPQMTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQDHNWK 861
            ++                     + + + ++ L L    + +  P+      A++   W+
Sbjct: 816  EL---------------------YEVTENQENLTLFCLFA-ECEPMDFQ--KAIEKKTWR 851

Query: 862  MAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQT 921
             AM +E  ++  N TW+L   P+    I   W+++ KK + G  ERYKARLV  G +Q+ 
Sbjct: 852  NAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRV 911

Query: 922  GVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRDP 981
            G+D  E F+PV +  T+R ++S+A    W +HQ+DVK+AFL+G+L E VY+ QP G+   
Sbjct: 912  GIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVK 971

Query: 982  QHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLY 1041
               D V  LKK LYGLKQAPRAW  R   Y     F     +H+L+I    +D     LY
Sbjct: 972  GEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIACLY 1031

Query: 1042 VDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTRHS--------------- 1086
            VDD+I T ++ ++ +    ++  EF M D+G +SY+LGI V +                 
Sbjct: 1032 VDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVL 1091

Query: 1087 -----DDTKA---------KLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQVC 1132
                 DD+           KLS        DP+ ++SL G+L+YLT TRPDI YAV  V 
Sbjct: 1092 KKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVS 1151

Query: 1133 LFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGY 1192
             +M  P T H  A KRI+RYIKGT   GLH   ++  KL  Y+D+DWGG  D RKSTSG+
Sbjct: 1152 RYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGF 1211

Query: 1193 CVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYC 1252
              Y+GD   +W +K+QP ++ S+ EAEY    + V  + WLRNLL EL  P  + T ++ 
Sbjct: 1212 VFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFV 1271

Query: 1253 DNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLPLQL 1312
            DN SA+ L+ NP+ H R+KHI+   H++RE V++  V++ +V +  Q+AD FTK L  + 
Sbjct: 1272 DNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADFFTKPLKREN 1331

Query: 1313 FDDFRDSLHI 1322
            F   R  L +
Sbjct: 1332 FIKMRSLLGV 1341


>At2g16670 putative retroelement pol polyprotein
          Length = 1333

 Score =  560 bits (1444), Expect = e-159
 Identities = 354/1032 (34%), Positives = 522/1032 (50%), Gaps = 72/1032 (6%)

Query: 347  LTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPL 406
            L + +V +  +   +L+S+ +   +N   ++       V+D  + M +      G  +  
Sbjct: 313  LVMISVFYVEEFQSDLISIGQLMDENRCVLQMSDRFLVVQDRTSRMVMGAGRRVGGTFHF 372

Query: 407  ATRPYYPSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSILCNKFRNNFFCQSCQLG 466
             +     S T       + E+WH+R+GHP   ++ SL   +S+  +    N  C  C   
Sbjct: 373  RSTEIAASVTVKE--EKNYELWHSRMGHPAARVV-SLIPESSVSVSSTHLNKACDVCHRA 429

Query: 467  KQIKLPFYESLSSTLLPFDIVHSDIW---TSPILSSGGHHYYILFLDDFTDFLWTFPLTN 523
            KQ +  F  S++ TL  F++++ D+W    +P  S  G  Y++  +DD++  +W + L +
Sbjct: 430  KQTRNSFPLSINKTLRIFELIYCDLWGPYRTP--SHTGARYFLTIIDDYSRGVWLYLLND 487

Query: 524  KSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQ 583
            KS+A      F      QF   IK  + DNG E+      +F ++ G+I   SC  T  +
Sbjct: 488  KSEAPCHLKNFFAMTDRQFNVKIKTVRSDNGTEF--LCLTKFFQEQGVIHERSCVATPER 545

Query: 584  NGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQTPTTILYQK 643
            N +VERK R + N+ R L   A+LP  FW   +  A YL+N  P+  L   TP   L++K
Sbjct: 546  NDRVERKHRHLLNVARALRFQANLPIQFWGECVLTAAYLINRTPSSVLNDSTPYERLHKK 605

Query: 644  SPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIISRH 703
             P + HL+VFG LC+    +   +K   RS  CVF+GYP   +G++ F+L   +  +SR 
Sbjct: 606  QPRFDHLRVFGSLCYAHNRNRGGDKFAERSRRCVFVGYPHGQKGWRLFDLEQNEFFVSRD 665

Query: 704  VIFDENTFPFSNSNIP------ESSCYNFLDTSDTPFPYHLFQHTSNLPTNEPNSHDQPP 757
            V+F E  FPF  S+        E + +  +         HL Q+    P    +S   P 
Sbjct: 666  VVFSELEFPFRISHEQNVIEEEEEALWAPIVDGLIEEEVHLGQNAGPTPPICVSSPISPS 725

Query: 758  TT-------TATPLTT---PYSINTTTHQPTVAPSPQIQTSPQLTITPNTASPHQIPPPN 807
             T       T++PL T   P    +TT   + +    +Q  P     P TA    + PP 
Sbjct: 726  ATSSRSEHSTSSPLDTEVVPTPATSTTSASSPSSPTNLQFLPLSRAKPTTAQA--VAPP- 782

Query: 808  PLLANPPLSPQMTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPI----NALQDHNWKMA 863
               A PP   Q T      +     ++N   ++  Q SP   N I        D     A
Sbjct: 783  ---AVPPPRRQSTRNKAPPVTLKDFVVN---TTVCQESPSKLNSILYQLQKRDDTRRFSA 836

Query: 864  MKDEY---DALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQ 920
                Y   DA  +N TW +   P     I S W+++ K  +DGS ERYKARLV  G+ Q+
Sbjct: 837  SHTTYVAIDAQEENHTWTIEDLPPGKRAIGSQWVYKVKHNSDGSVERYKARLVALGNKQK 896

Query: 921  TGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRD 980
             G D GETF+PV K AT+R  L +A+ ++W +HQ+DV NAFLHG+L E VYM  PPGF +
Sbjct: 897  EGEDYGETFAPVAKMATVRLFLDVAVKRNWEIHQMDVHNAFLHGDLREEVYMKLPPGF-E 955

Query: 981  PQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILL 1040
              HP+ VC L+K+LYGLKQAPR W+++ T  +   GF  S+ D+SLF    G     IL+
Sbjct: 956  ASHPNKVCRLRKALYGLKQAPRCWFEKLTTALKRYGFQQSLADYSLFTLVKGSVRIKILI 1015

Query: 1041 YVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTRHSD------------- 1087
            YVDD+I+T +S    Q     L S F MKDLGPL YFLGI V R +              
Sbjct: 1016 YVDDLIITGNSQRATQQFKEYLASCFHMKDLGPLKYFLGIEVARSTTGIYICQRKYALDI 1075

Query: 1088 ----------------DTKAKLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQV 1131
                            +   KL  ++     DP  YR L G L YL  TR D++++V  +
Sbjct: 1076 ISETGLLGVKPANFPLEQNHKLGLSTSPLLTDPQRYRRLVGRLIYLAVTRLDLAFSVHIL 1135

Query: 1132 CLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSG 1191
              FM +P+  H  A  R++RY+K     G+ L  S   ++T + D+DW G P +R+S +G
Sbjct: 1136 ARFMQEPREDHWAAALRVVRYLKADPGQGVFLRRSGDFQITGWCDSDWAGDPMSRRSVTG 1195

Query: 1192 YCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVY 1251
            Y V  GD+ +SW  K+Q T+S+SSAEAEYR ++ + SE  WL+ LL  L     +  ++ 
Sbjct: 1196 YFVQFGDSPISWKTKKQDTVSKSSAEAEYRAMSFLASELLWLKQLLFSLGVSHVQPMIMC 1255

Query: 1252 CDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLPLQ 1311
            CD+ SA+Y++ NP+ H+RTKHIE+D HFVR++  +G +   HV +  Q+ADIFTK L   
Sbjct: 1256 CDSKSAIYIATNPVFHERTKHIEIDYHFVRDEFVKGVITPRHVGTTSQLADIFTKPLGRD 1315

Query: 1312 LFDDFRDSLHIR 1323
             F  FR  L IR
Sbjct: 1316 CFSAFRIKLGIR 1327


>At2g07010 putative retroelement pol polyprotein
          Length = 1413

 Score =  547 bits (1409), Expect = e-155
 Identities = 356/1067 (33%), Positives = 517/1067 (48%), Gaps = 115/1067 (10%)

Query: 297  MDTGATSHMTANGGNLTSYSNI-SNNITVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHA 355
            +DTGA+ HMT     LT+   I S ++    G     I  G   +      ++L+NVL+ 
Sbjct: 386  LDTGASHHMTGQLSLLTNIVTIPSCSVGFADGRKTFAISMGTFKLSET---VSLSNVLYV 442

Query: 356  PKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPYYPST 415
            P L  +L+SV K     +    F      ++D  +   +        +Y L       +T
Sbjct: 443  PALNCSLISVSKLVKQIKCLALFTDTICVLQDRFSRTLIGTGEERDGVYYLTDAA--TTT 500

Query: 416  TPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSILCNKFRNNFFCQSCQLGKQIKLPFYE 475
                     + +WH RLGHP  S+L+SL   +   C+    +  C  C   KQ +  F +
Sbjct: 501  VHKVDITTDHALWHQRLGHPSFSVLSSLPLFSGSSCSVSSRS--CDVCFRAKQTREVFPD 558

Query: 476  SLSSTLLPFDIVHSDIWTS-PILSSGGHHYYILFLDDFTDFLWTFPLTNKSQAHSIFLQF 534
            S + +   F ++H D+W    + SS G  Y++  +DDF+  +WT+ L  KS+  S+   F
Sbjct: 559  SSNKSTDCFSLIHCDVWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLLLAKSEVRSVLTNF 618

Query: 535  CNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTI 594
              + + QF + +K  + DNG E+       + K+ G++ + SC  T  QNG+VERK R I
Sbjct: 619  LAYTEKQFGKSVKIIRSDNGTEF--MCLSSYFKEQGIVHQTSCVGTPQQNGRVERKHRHI 676

Query: 595  NNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKKLALQTPTTILYQKSPSYSHLKVFG 654
             N+ R LL  ASLP  FW  A+  A YL+N  P+      +P  +L+   P Y  L+VFG
Sbjct: 677  LNVSRALLFQASLPIKFWGEAVMTAAYLINRTPSSIHNGLSPYELLHGCKPDYDQLRVFG 736

Query: 655  CLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIISRHVIFDENTFPFS 714
              C+    +  ++K   RS  C+F+GYP   +G+K ++LS+ + I+SR V+F EN FP++
Sbjct: 737  SACYAHRVTRDKDKFGERSRLCIFVGYPFGQKGWKVYDLSTNEFIVSRDVVFRENVFPYA 796

Query: 715  NSN-----IPESSCYNFLDTSDTPF---------------PYHLFQHTS------NLPTN 748
             +       P  +C    D    PF               P     + S      + P +
Sbjct: 797  TNEGDTIYTPPVTCPITYDEDWLPFTTLEDRGSDENYLSDPPVCVTNVSESDTEHDTPQS 856

Query: 749  EPNSHDQP--PTTTATPLTTPYSINTTTHQPTVAPSPQIQTSPQLTITPNTASPHQIPPP 806
             P   D P  P+T+ TP  TP + +++T   T    PQ  T+P +  TP      Q+  P
Sbjct: 857  LPTPVDDPLSPSTSVTPTQTPTNSSSSTSPSTNVSPPQQDTTPIIENTPPRQGKRQVQQP 916

Query: 807  NPLLANPPLSPQMTTRAQHGIFKPRQLLNLHTSSSNQISPLPT----------------- 849
              L      +   T    H +  P    +  +   N   PL                   
Sbjct: 917  ARLKDYILYNASCTPNTPH-VLSPSTSQSSSSIQGNLQYPLTDYISDECFSAGHKVFLAA 975

Query: 850  -----NPINALQDHN---WKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKA 901
                  P +  +D     W  AM  E DAL  NKTWD+V  P+    I S W+++ K  A
Sbjct: 976  ITANDEPKHFKEDVKVKVWNDAMYKEVDALEVNKTWDIVDLPTGKVAIGSQWVYKTKFNA 1035

Query: 902  DGSFERYKARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAF 961
            DG+ ERYKARLV  G+NQ  G D  ETF+PVVK  T+RT+L +  +  W ++Q+DV NAF
Sbjct: 1036 DGTVERYKARLVVQGNNQIEGEDYTETFAPVVKMTTVRTLLRLVAANQWEVYQMDVHNAF 1095

Query: 962  LHGNLNETVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSV 1021
            LHG+L E VYM  PPGFR   HPD VC L+KSLYGLKQAPR W+++ +D +   GF    
Sbjct: 1096 LHGDLEEEVYMKLPPGFRH-SHPDKVCRLRKSLYGLKQAPRCWFKKLSDALKRFGFIQGY 1154

Query: 1022 CDHSLFIYHSGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGIS 1081
             D+S F Y        +L+YVDD+I+  + + + Q     L   F+MKDLG L YFLGI 
Sbjct: 1155 EDYSFFSYSCKGIELRVLVYVDDLIICGNDEYMVQKFKEYLGRCFSMKDLGKLKYFLGIE 1214

Query: 1082 VTRHSDDTKAKLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQVCLFMHDPKTQ 1141
            V+R  D                                                  P+  
Sbjct: 1215 VSRGPD-------------------------------------------------APREA 1225

Query: 1142 HMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGYCVYLGDNLV 1201
            H+ A  RI+RY+KG+   G+ L  +    L  Y D+D+  CP TR+S S Y V LG + +
Sbjct: 1226 HLEAAMRIVRYLKGSPGQGILLSANKDLTLEVYCDSDFQSCPLTRRSLSAYVVLLGGSPI 1285

Query: 1202 SWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNVSAVYLS 1261
            SW  K+Q T+S SSAEAEYR ++  + E  WL  LL EL   +   T ++CD+ +A+ ++
Sbjct: 1286 SWKTKKQDTVSHSSAEAEYRAMSVALKEIKWLNKLLKELGITLAAPTRLFCDSKAAISIA 1345

Query: 1262 GNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGL 1308
             NP+ H+RTKHIE D H VR+ V  G +   HV +  Q+ADIFTK L
Sbjct: 1346 ANPVFHERTKHIERDCHSVRDAVRDGIITTHHVRTSEQLADIFTKAL 1392



 Score = 30.0 bits (66), Expect = 9.3
 Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 6/29 (20%)

Query: 167 SNNGSRG----GRGG--SGNNHGGRGRGR 189
           +N G RG    GRGG  SG+N+ GRGRG+
Sbjct: 307 TNGGGRGSSSRGRGGRSSGSNNSGRGRGQ 335


>At2g14930 pseudogene
          Length = 1149

 Score =  504 bits (1298), Expect = e-142
 Identities = 357/1127 (31%), Positives = 540/1127 (47%), Gaps = 148/1127 (13%)

Query: 42   NSRALYLEQEFSKISMEQFSTASSYCQHIKSLSDQLANVGAPVSNERMVLQLVSGLSEAY 101
            +SR   L++    +S E   T   Y +++K++ DQLA+VG+PV+ +  +  +V GL+  Y
Sbjct: 117  SSRIFELQRRLHSLSKEG-KTMEEYLRYLKTICDQLASVGSPVAEKMKIFAMVHGLTREY 175

Query: 102  DTVGSQIRHS-DTLP-PFYKARSMVVLEETARAKRTAVTTANSTFLAAQEDNNSGNSPSH 159
            + + + +  + D  P P Y+     +     R +   VT  +                  
Sbjct: 176  EPLITSLEGTLDAFPGPSYEDVVYRLKNFDDRLQGYTVTDVS------------------ 217

Query: 160  RPNRNNNSNNGSRGGRGGSGNNHGGRGRGRGGGRGGRSHNYQQGSWQQPQAPQHQWAYPP 219
             P+   N+   S  GRGG  N    RG+G    RG     +QQ                 
Sbjct: 218  -PHLAFNTFRSSNRGRGGRNN----RGKGNFSTRG---RGFQQ----------------- 252

Query: 220  YQYPSWNAPWQPWATPPCPYPTTGNWQRPVVPNRQAGILGAKPQQAHVA--ATPSSYAPT 277
             Q+ S ++       P C                   I G +   A         SY  +
Sbjct: 253  -QFSSSSSSVSASEKPMCQ------------------ICGKRGHYALQCWHRFDDSYQHS 293

Query: 278  DIQAAMHS---LSLAPPDEQWYMDTGATSHMTANGGNLTSYSNISNNITV--GSGHNIPV 332
            +  AA  S   ++    D  W  D+ AT+H+T N   L        N TV    G+ +P+
Sbjct: 294  EAAAAAFSALHITDVSDDSGWVPDSAATAHITNNSSRLQQMQPYLGNDTVMASDGNFLPI 353

Query: 333  IGCGNALVQNPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGM 392
               G+A + +    L L +VL  P + K+L+SV K T D   S  FD  G  VKD  T  
Sbjct: 354  THIGSANLPSTSGNLPLKDVLVCPNIAKSLLSVSKLTKDYPCSFTFDADGVLVKDKATCK 413

Query: 393  PLMRCNSSGD-LYPLATRPYYPSTTPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSILC 451
             L + +S+ + LY L   P +     +     ++E+WH RLGHP   +L  L    +I  
Sbjct: 414  VLTKGSSTSEGLYKLEN-PKFQMFYSTRQVKATDEVWHMRLGHPNPQVLQLLANKKAIQI 472

Query: 452  NKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIW-TSPILSSGGHHYYILFLD 510
            NK  +   C+SC+LGK  +LPF  S      P + VH D+W  +P+ S  G  YY++F+D
Sbjct: 473  NKSTSKM-CESCRLGKSSRLPFIASDFIASRPLERVHCDLWGPAPVSSIQGFQYYVIFID 531

Query: 511  DFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNG 570
            + + F W +PL +KS   S+F++F + ++   +  I  FQ D G E+ ++ F Q  +++G
Sbjct: 532  NRSRFCWFYPLKHKSDFCSLFMKFQSFVENLLQTKIGTFQSDGGGEFTSNRFLQHLQESG 591

Query: 571  MIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKK 630
            +    SCPHT  QNG  ERK R +     TL+  +  P  FW  A   A +L N+LPT  
Sbjct: 592  IQHYISCPHTPQQNGLAERKHRQLTERGLTLMFQSKAPQRFWVEAFFTANFLSNLLPTSA 651

Query: 631  L-ALQTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYK 689
            L +  TP  +L+ K+P YS L+ FGC CFP + +  RNK   RS  C+FLGY   ++GY+
Sbjct: 652  LDSSTTPYQVLFGKAPDYSALRTFGCACFPTLRAYARNKFDPRSLKCIFLGYTEKYKGYR 711

Query: 690  CFELSSRKIIISRHVIFDENTFPFSNSNIPESSCYNFLDTSDTPFPYHLFQHTSNLPTNE 749
            CF   + ++ +SRHV+FDE++FPF             +DT      Y   QH S  P  +
Sbjct: 712  CFFPPTNRVYLSRHVLFDESSFPF-------------IDT------YTSLQHPSPTPMFD 752

Query: 750  PNSHDQPPTTTATPLTTPYSINTTTHQPTVAPSPQIQTSPQLTIT--PNTASPH---QIP 804
                  P +++          N+    P +      QT P L++   PN   P     + 
Sbjct: 753  AWLKSFPSSSSPLENDQTAGFNSGASVPVITAQ---QTQPILSLKDGPNILLPEGEITVS 809

Query: 805  PPNPLLANPPL--SPQMTTRAQHGIFKPRQLLNLHT------SSSNQISPLPTNPINALQ 856
              N  + + P+  +P  T  ++    K  + L++ +      ++S  + P+  N +++  
Sbjct: 810  SNNQDIEDEPICVTPLQTLSSEDNA-KSSETLSMGSEECSECTASFDLDPIGNNALSSSP 868

Query: 857  DHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNG 916
             H+    +           T  +  R     I  +    R K   DGS ++YKARLV  G
Sbjct: 869  RHD---QLTSSIPRAATESTHPMTTRLKKGIIKLNQ---RVKLNVDGSLDKYKARLVAQG 922

Query: 917  SNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPP 976
              Q+ G+D  ET+SPVV+ AT+R VL ++   +W L Q+DVKN FLHG+L ETVYM QP 
Sbjct: 923  FKQEEGIDYLETYSPVVRSATVRAVLHLSTIMNWELKQMDVKNGFLHGDLTETVYMKQPA 982

Query: 977  GFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTA 1036
            GF D  HPD+VCLL K+LYGLKQAPRAW+ +F+ ++ + GF  S+ D SLF+     D  
Sbjct: 983  GFIDKAHPDHVCLLHKALYGLKQAPRAWFDKFSKFLLSFGFVCSMSDPSLFVCVKNKDVI 1042

Query: 1037 YILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTRHS---------- 1086
             +LLYVDD+++T +S  L  S++S+LN +F MKDLG LSYFLGI    HS          
Sbjct: 1043 MLLLYVDDMVITGNSSKLLSSLLSELNKQFKMKDLGRLSYFLGIQAQFHSQGLFLSQQKY 1102

Query: 1087 -DDTKAKLSGTSGNP------------------YHDPSEYRSLAGAL 1114
             +D  A  + ++ +P                  + +PS +RSLAG L
Sbjct: 1103 AEDLLATAAMSNCSPVATPLPLQPERTPNQTELFDNPSYFRSLAGKL 1149


>At4g27200 putative protein
          Length = 819

 Score =  469 bits (1207), Expect = e-132
 Identities = 296/756 (39%), Positives = 403/756 (53%), Gaps = 102/756 (13%)

Query: 639  ILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKI 698
            +L +K  S S  ++ G  CFP +     NK    S  CVFLGY   ++GY+C    + ++
Sbjct: 1    MLVRKRHSTSSWRI-GSACFPTLRDYAENKFNPCSLKCVFLGYNEKYKGYRCLYPPTGRL 59

Query: 699  IISRHVIFDENTFPFSNS--------NIPESSCYNFLDTSDTPFPYHLFQHTSNLPTNEP 750
             ISRHVIFDE+ +PFS++          P  + +  L +SD+P P      TS  P++  
Sbjct: 60   YISRHVIFDESVYPFSHTYKHLHPQPRTPLLAAW--LRSSDSPAP-----STSTSPSSRS 112

Query: 751  ---NSHDQPPT----TTATPLTTPYSI-----NTTTHQPT-----------------VAP 781
                S D PP     T   P   P S      N TT Q                    + 
Sbjct: 113  PLFTSADFPPLPQRKTPLLPTLVPISSVSHASNITTQQSPDFDSERTTDFDSASIGDSSH 172

Query: 782  SPQIQTSPQLTITPNTASPHQIPPPNPLLANPPLSPQMTTRAQHGIFKPRQLLNLHTSSS 841
            S Q  +  + TI   + + HQ P      A+  + P M TRA+ GI KP      +   S
Sbjct: 173  SSQAGSDSEETIQQASVNVHQTP------ASTNVHP-MVTRAKVGISKPNPR---YVFLS 222

Query: 842  NQIS-PLPTNPINALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKK 900
            +++S P P     AL+   W  AM +E     + +TW LVP  S+ +++ S W+FR K  
Sbjct: 223  HKVSYPEPKTVTAALKHPGWTGAMTEEIGNCSETQTWSLVPYKSDMHVLGSKWVFRTKLH 282

Query: 901  ADGSFERYKARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNA 960
            ADG+  + KAR+V  G  Q+ G+D  ET+SPVV+  T+R VL +A + +W + Q+DVKNA
Sbjct: 283  ADGTLNKLKARIVAKGFLQEEGIDYLETYSPVVRTPTVRLVLHLATALNWDIKQMDVKNA 342

Query: 961  FLHGNLNETVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHS 1020
            FLHG+L ETVYM QP   RD     +VCLL KS+YGLKQ+PRAW+ +F+ ++   GF   
Sbjct: 343  FLHGDLKETVYMTQPAANRD-----HVCLLHKSIYGLKQSPRAWFDKFSTFLLEFGFFCR 397

Query: 1021 VCDHSLFIYHSGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSY-FLG 1079
              D SLFIY   ++   +LL          S TL  S+++ LN EF M D+G  S  FLG
Sbjct: 398  KSDPSLFIYAHNNNLILLLL----------SQTLT-SLLAALNKEFRMTDMGQHSLTFLG 446

Query: 1080 ISVTR-----------HSDDTKAKLSGTSGNP------------------YHDPSEYRSL 1110
            I V R           +++D     S     P                  + DP+ +RS+
Sbjct: 447  IQVQRQQNGLFMSQQKYAEDLLIAASMEHCTPLPTPLPVQLDRVPHQEELFSDPTYFRSI 506

Query: 1111 AGALQYLTFTRPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDK 1170
            AG LQYLT TRPDI +AV  VC  MH P       LKRI+RYIKGT T G+     +   
Sbjct: 507  AGKLQYLTLTRPDIQFAVNFVCQKMHQPTISDFHLLKRILRYIKGTITMGISYSRDSPTL 566

Query: 1171 LTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSES 1230
            L  Y+D+DWG C  TR+S  G C ++G NLVSWS+K+ PT+SRSS EAEY+ +++  SE 
Sbjct: 567  LQAYSDSDWGNCKQTRRSVGGLCTFMGTNLVSWSSKKHPTVSRSSTEAEYKSLSDAASEI 626

Query: 1231 CWLRNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVR 1290
             WL  LL EL+ P+     ++CDN+SAVYL+ NP  H RTKH ++D HFVRE+VA   + 
Sbjct: 627  LWLSTLLRELRIPLPDTPELFCDNLSAVYLTANPAFHARTKHFDIDFHFVRERVALKALV 686

Query: 1291 VMHVPSRYQIADIFTKGLPLQLFDDFRDSLHIRQPP 1326
            V H+P   QIADIFTK LP + F   R  L +  PP
Sbjct: 687  VKHIPGSEQIADIFTKSLPYEAFIHLRGKLGVTLPP 722


>At4g10990 putative retrotransposon polyprotein
          Length = 1203

 Score =  405 bits (1041), Expect = e-113
 Identities = 237/695 (34%), Positives = 360/695 (51%), Gaps = 71/695 (10%)

Query: 681  YPSNHRGYKCFELSSRKIIISRHVIFDENTFPFSNSNIPESSCYNFLDTS-DTPFPYHLF 739
            YPS ++GYK  +L S  I I+R+V+F E  FPF  S   + S   F ++    P P H  
Sbjct: 335  YPSGYKGYKVLDLESHSISITRNVVFHETKFPFKTSKFLKESVDMFPNSILPLPAPLHFV 394

Query: 740  QHT---SNLPTNEPNSHDQPPTTTATPLTT-PYSINT---------TTHQPTVAPSPQIQ 786
            +      +L  ++ N+      ++A+ +   P ++NT         T   P   P    +
Sbjct: 395  ESMPLDDDLRADDNNASTSNSASSASSIPPLPSTVNTQNTDALDIDTNSVPIARPKRNAK 454

Query: 787  TSPQLT------------ITPNTASPHQIP----PPNPLLANPPLSPQMTTRAQHGIFKP 830
                L+            ++P T++  + P    PP  +    P+S  ++        K 
Sbjct: 455  APAYLSEYHCNSVPFLSSLSPTTSTSIETPSSSIPPKKITTPYPMSTAISYD------KL 508

Query: 831  RQLLNLHTSSSNQISPLPTNPINALQDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIR 890
              L + +  + N +   P     A++   W  A  +E  AL  NKTW +       N++ 
Sbjct: 509  TPLFHSYICAYN-VETEPKAFTQAMKSEKWTRAANEELHALEQNKTWIVESLTEGKNVVG 567

Query: 891  SLWIFRHKKKADGSFERYKARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSW 950
              W+F  K   DGS ERYKARLV  G  QQ G+D  ETFSPV K  +++ +L +A +  W
Sbjct: 568  CKWVFTIKYNPDGSIERYKARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAATGW 627

Query: 951  CLHQLDVKNAFLHGNLNETVYMYQPPGFRDPQHPDY----VCLLKKSLYGLKQAPRAWYQ 1006
             L Q+DV NAFLHG L+E +YM  P G+  P         VC L KSLYGLKQA R WY+
Sbjct: 628  SLTQMDVSNAFLHGELDEEIYMSLPQGYTPPTGISLPSKPVCRLLKSLYGLKQASRQWYK 687

Query: 1007 RFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEF 1066
            R +       F  S  D+++F+  S      +L+YVDD+++ ++  +  +++   L SEF
Sbjct: 688  RLSSVFLGANFIQSPADNTMFVKVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEF 747

Query: 1067 AMKDLGPLSYFLGISVTRHSD-----------------------------DTKAKLSGTS 1097
             +KDLGP  +FLG+ + R S+                             D    L+   
Sbjct: 748  KIKDLGPARFFLGLEIARSSEGISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEM 807

Query: 1098 GNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTS 1157
            G    + + YR L G L YL  TRPDI++AV  +  F+  P   HM A  +++RY+KG  
Sbjct: 808  GTLLPNATSYRELVGRLLYLCITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNP 867

Query: 1158 THGLHLYPSTVDKLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAE 1217
              GL    S+   L  ++DADWG C D+R+S +G+C+YLG +L++W +K+Q  +SRSS E
Sbjct: 868  GQGLMYSASSELCLNGFSDADWGTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTE 927

Query: 1218 AEYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDI 1277
            +EYR +A    E  WL+ LL +L   +T    ++CDN SA++L+ NP+ H+RTKHIE+D 
Sbjct: 928  SEYRSLAQATCEIIWLQQLLKDLHVTMTCPAKLFCDNKSALHLATNPVFHERTKHIEIDC 987

Query: 1278 HFVREKVARGQVRVMHVPSRYQIADIFTKGL-PLQ 1311
            H VR+++  G+++ +HVP+  Q+ADI TK L P+Q
Sbjct: 988  HTVRDQIKAGKLKTLHVPTGNQLADILTKPLHPVQ 1022



 Score = 78.2 bits (191), Expect = 3e-14
 Identities = 78/314 (24%), Positives = 124/314 (38%), Gaps = 73/314 (23%)

Query: 283 MHSLSLAPPDEQWYMDTGATSHMTANGGNLTSYSNISN-NITVGSGHNIPVIGCGNALVQ 341
           + SL      + W +D+GA+SH+ ++        ++S   +T+ +G  + +   G   + 
Sbjct: 87  LSSLQNVLSSDAWIIDSGASSHVCSDLTMFRELIHVSGVTVTLPNGTRVAITHTGTICIT 146

Query: 342 NPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSG 401
           +    L L+NVL  P    NL+SV         S  F      +++   G+ + R  +  
Sbjct: 147 S---TLILHNVLLVPDFKFNLISVCCLVKTLSYSAHFFADCCYIQELTRGLMIGRGKTYN 203

Query: 402 DLYPLATR-----PYYPSTTPSTFAALSN-EIWHNRLGHPGVSILNSLHRNNSILCNKFR 455
           +LY L T+     P  P+ +  T     +  +WH RLG     I + LH         +R
Sbjct: 204 NLYILETQRTSFSPSLPAASSFTGTVQDDCLLWHQRLG-----IRHYLH---------YR 249

Query: 456 NNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIWTSPILSSGGHHYYILFLDDFTDF 515
           N +F                                              +  +DD T  
Sbjct: 250 NLYF----------------------------------------------LTLVDDCTRT 263

Query: 516 LWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRF 575
            W + + NKS+  +IF  F   I TQ+   IK  + DN KE     F +F K+ GMI +F
Sbjct: 264 TWVYMMKNKSEVSNIFPVFVKLIFTQYNAKIKAIRSDNVKEL---AFTKFVKEQGMIHQF 320

Query: 576 SCPHTSPQNGKVER 589
           SC +T  QN  VER
Sbjct: 321 SCAYTPQQNSVVER 334


>At1g58140 hypothetical protein
          Length = 1320

 Score =  381 bits (978), Expect = e-105
 Identities = 211/552 (38%), Positives = 301/552 (54%), Gaps = 49/552 (8%)

Query: 800  PHQIPPPNPLLANPPLSPQMTTRAQHGIFKPRQLLNLHTSSSNQISPLPTNPINALQDHN 859
            P +  PP+     PP SP                    TSS  +    P +   A++   
Sbjct: 778  PTREEPPSEEPTTPPTSP--------------------TSSQIEEKCEPMDFQEAIEKKT 817

Query: 860  WKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQ 919
            W+ AM +E  ++  N TW+L   P+    I   W+++ KK + G  ERYKARLV  G +Q
Sbjct: 818  WRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQ 877

Query: 920  QTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFR 979
            + G+D  E F+PV +  T+R ++S+A    W +HQ+DVK+AFL+G+L E VY+ QP G+ 
Sbjct: 878  RAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYI 937

Query: 980  DPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYIL 1039
                 D V  LKK+LYGLKQAPRAW  R   Y     F     +H+L+I    +D     
Sbjct: 938  VKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIAC 997

Query: 1040 LYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTRHS------------- 1086
            LYVDD+I T ++ ++ +    ++  EF M D+G +SY+LGI V +               
Sbjct: 998  LYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKE 1057

Query: 1087 -------DDTKA---------KLSGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAVQQ 1130
                   DD+           KLS        DP+ ++SL G+L+YLT TRPDI YAV  
Sbjct: 1058 VLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGV 1117

Query: 1131 VCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKSTS 1190
            V  +M  P T H  A KRI+RYIKGT   GLH   ++  KL  Y+D+DWGG  D RKSTS
Sbjct: 1118 VSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTS 1177

Query: 1191 GYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPVTKATLV 1250
            G+  Y+GD   +W +K+QP ++ S+ EAEY    + V  + WLRNLL EL  P  + T +
Sbjct: 1178 GFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKI 1237

Query: 1251 YCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIFTKGLPL 1310
            + DN SA+ L+ NP+ H R+KHI+   H++RE V++  V++ +V +  Q+ADIFTK L  
Sbjct: 1238 FVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKR 1297

Query: 1311 QLFDDFRDSLHI 1322
            + F   R  L +
Sbjct: 1298 EDFIKMRSLLGV 1309



 Score =  235 bits (600), Expect = 1e-61
 Identities = 193/746 (25%), Positives = 327/746 (42%), Gaps = 76/746 (10%)

Query: 41  KNSRALYLEQEFSKISMEQFSTASSYCQHIKSLSDQLANVGAPVSNERMVLQLVSGLSEA 100
           K  R   L  EF  + M++    S Y   + ++++ L   G  + + R++ +++  L   
Sbjct: 109 KKVRLQTLRGEFEALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLK 168

Query: 101 YDTVGSQIRHSDTLPPFYKAR---SMVVLEETARAKRTAVTTANSTFLAAQEDNNSGNSP 157
           ++ + + I  +  L      +   S+   EE  + K   V    +  +  +E        
Sbjct: 169 FEHIVTVIEETKDLEAMTIEQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEE-------- 220

Query: 158 SHRPNRNNNSNNGSRGGRGGSGNNHGGRGRGRGG---GRGGRSHNYQQGSWQQPQAPQHQ 214
                      NG    R G G     RGRGRGG   GRG R H        +  +    
Sbjct: 221 -----------NGQSYQRRGGGQV---RGRGRGGYGNGRGWRPHEDNTNQRGENSSRGRG 266

Query: 215 WAYPPYQYPS-----WNAPWQPWATPPCPYPTTGNWQRPVVPNRQAGILGAKPQQAHVAA 269
             +P  +Y       +N          C  P+   ++       +A  +  K Q+  +  
Sbjct: 267 KGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEE------KANYVEEKIQEEDMLL 320

Query: 270 TPSSYAPTDIQAAMHSLSLAPPDEQWYMDTGATSHMTANGGNLTSYS-NISNNITVGSGH 328
             S     D Q   H         +WY+D+GA++HM            ++  N+ +G   
Sbjct: 321 MASY--KKDEQEENH---------KWYLDSGASNHMCGRKSMFAELDESVRGNVALGDES 369

Query: 329 NIPVIGCGNALVQ--NPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVK 386
            + V G GN L++  N  +   ++NV + P +  N++S+ +  ++    +       S++
Sbjct: 370 KMEVKGKGNILIRLKNGDHQF-ISNVYYIPSMKTNILSLGQL-LEKGYDIRLKDNNLSIR 427

Query: 387 DFQTGMPLMRCNSSGDLYPLATRPYYPSTTPSTFAALSNEIWHNRLGH---PGVSILNSL 443
           D ++ +      S   ++ L  R          +   S  +WH R GH    G+ +L+  
Sbjct: 428 DQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEES-WLWHLRFGHLNFGGLELLSRK 486

Query: 444 HRNNSILCNKFRNNFFCQSCQLGKQIKLPF-YESLSSTLLPFDIVHSDIWTSPIL--SSG 500
                + C    N   C+ C LGKQ K+ F  ES S    P +++H+D+   PI   S G
Sbjct: 487 EMVRGLPCINHPNQV-CEGCLLGKQFKMSFPKESSSRAQKPLELIHTDV-CGPIKPKSLG 544

Query: 501 GHHYYILFLDDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNS 560
             +Y++LF+DDF+   W + L  KS+   IF +F  H++ +    IK  + D G E+ + 
Sbjct: 545 KSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSK 604

Query: 561 HFHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMAT 620
            F ++C+ NG+  + + P +  QNG  ERK RTI  + R++L    LP   W  A+  A 
Sbjct: 605 EFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAV 664

Query: 621 YLLNILPTKKLALQTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLG 680
           YLLN  PTK ++ +TP      + P  SHL+VFG +    +P   R+KL  +S   +F+G
Sbjct: 665 YLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIG 724

Query: 681 YPSNHRGYKCFELSSRKIIISRHVIFDENTFPFSNSNIPESSCYNFLDTSDTPFPYHLFQ 740
           Y +N +GYK +   ++K IISR+++FDE      NSN  +   YNF       FP+  F+
Sbjct: 725 YDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEED---YNF-------FPH--FE 772

Query: 741 HTSNLPTNEPNSHDQPPTTTATPLTT 766
                PT E    ++P T   +P ++
Sbjct: 773 EDKPEPTREEPPSEEPTTPPTSPTSS 798


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.319    0.134    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,078,321
Number of Sequences: 26719
Number of extensions: 1594903
Number of successful extensions: 13374
Number of sequences better than 10.0: 496
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 208
Number of HSP's that attempted gapping in prelim test: 6446
Number of HSP's gapped (non-prelim): 3415
length of query: 1333
length of database: 11,318,596
effective HSP length: 111
effective length of query: 1222
effective length of database: 8,352,787
effective search space: 10207105714
effective search space used: 10207105714
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)