Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146719.10 + phase: 0 /pseudo
         (112 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g20580 putative 26S proteasome regulatory subunit S2               152  3e-38
At4g28470 putative protein                                            130  8e-32
At5g53760 unknown protein                                              32  0.067
At1g26700 membrane protein Mlo14                                       28  0.97
At1g15000 serine carboxypeptidase precursor, putative                  26  2.8
At5g10160 (3R)-hydroxymyristoyl-[acyl carrier protein] dehydrata...    25  4.8
At1g36940 hypothetical protein                                         25  4.8
At5g25910 disease resistance protein - like                            25  6.3
At3g24060 hypothetical protein                                         25  6.3
At2g17910 putative non-LTR retroelement reverse transcriptase          25  6.3
At2g13675 callose synthase (1,3-beta-glucan synthase) like protein     25  6.3
At1g17020 SRG1-like protein                                            25  6.3
At4g14070 A6 anther-specific protein (Z97335.16)                       25  8.2
At1g65280                                                              25  8.2
At1g22220 unknown protein                                              25  8.2

>At2g20580 putative 26S proteasome regulatory subunit S2
          Length = 891

 Score =  152 bits (383), Expect = 3e-38
 Identities = 79/110 (71%), Positives = 89/110 (80%), Gaps = 11/110 (10%)

Query: 2   LELPSV**GKYHYVLYFLVLAMQLTLGYYILLQKPTMLLTVGENLKPLLVPLRVGQAVDV 61
           L++  +  GKYHYVLYFLVLAMQ           P M+LTV ENLKPL VP+RVGQAVDV
Sbjct: 786 LDMKPIILGKYHYVLYFLVLAMQ-----------PRMMLTVDENLKPLSVPVRVGQAVDV 834

Query: 62  VGQAGRPKKITGFQTHSTSVLLAAGDRAELATEKYIPISPVLEAFVILKE 111
           VGQAGRPK ITGFQTHST VLLAAG+RAELAT+KYIP+SP+LE F+ILKE
Sbjct: 835 VGQAGRPKTITGFQTHSTPVLLAAGERAELATDKYIPLSPILEGFIILKE 884


>At4g28470 putative protein
          Length = 1103

 Score =  130 bits (328), Expect = 8e-32
 Identities = 70/103 (67%), Positives = 82/103 (78%), Gaps = 12/103 (11%)

Query: 2   LELPSV**GKYHYVLYFLVLAMQLTLGYYILLQKPTMLLTVGENLKPLLVPLRVGQAVDV 61
           L++ S+  GKYHYVLYFLVLAMQ           P M+LTV ++LKP+ VP+RVGQAVDV
Sbjct: 889 LDMKSIILGKYHYVLYFLVLAMQ-----------PRMMLTVDQSLKPISVPVRVGQAVDV 937

Query: 62  VGQAGRPKKITGFQTHSTSVLLAAGDRAELATEKY-IPISPVL 103
           VGQAGRPK ITGFQTHST VLLAAG+RAELATEKY +P+ P+L
Sbjct: 938 VGQAGRPKTITGFQTHSTPVLLAAGERAELATEKYVVPLIPLL 980


>At5g53760 unknown protein
          Length = 573

 Score = 31.6 bits (70), Expect = 0.067
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 12/78 (15%)

Query: 11  KYHYVLYFLVLAMQLTLGY-------YILLQKPTMLLTVGENLKPLLVPLRVGQAVDVVG 63
           K HY++YF     +L LG+       Y  L    ++  +G N K  L+P R+ + +   G
Sbjct: 402 KNHYLVYF-----RLLLGFAGQFLCSYSTLPLYALVTQMGTNYKAALIPQRIRETIRGWG 456

Query: 64  QAGRPKKITGFQTHSTSV 81
           +A R K+  G     ++V
Sbjct: 457 KATRRKRRHGLYGDDSTV 474


>At1g26700 membrane protein Mlo14
          Length = 554

 Score = 27.7 bits (60), Expect = 0.97
 Identities = 18/70 (25%), Positives = 35/70 (49%), Gaps = 7/70 (10%)

Query: 19  LVLAMQLTLGY-------YILLQKPTMLLTVGENLKPLLVPLRVGQAVDVVGQAGRPKKI 71
           L++ ++L LG+       Y  L    ++  +G N K  L+P RV + ++  G+A R K+ 
Sbjct: 400 LLVYLRLILGFSGQFLCSYSTLPLYALVTQMGTNYKAALLPQRVRETINGWGKATRRKRR 459

Query: 72  TGFQTHSTSV 81
            G     +++
Sbjct: 460 HGLYGDDSTI 469


>At1g15000 serine carboxypeptidase precursor, putative
          Length = 444

 Score = 26.2 bits (56), Expect = 2.8
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 20/80 (25%)

Query: 27  LGYYILLQKPTMLLTVGENLKPLLVPLRVGQAVDVVGQAGRPKKITGFQTHSTSV----L 82
           +GYYIL +KP        N K  L  L +G         G    +T  QTH+ +V    L
Sbjct: 179 IGYYILKEKP--------NGKVNLKGLAIGN--------GLTDPVTQVQTHAVNVYYSGL 222

Query: 83  LAAGDRAELATEKYIPISPV 102
           + A  R EL   + I ++ V
Sbjct: 223 VNAKQRVELQKAQEISVALV 242


>At5g10160 (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase
           -like protein
          Length = 219

 Score = 25.4 bits (54), Expect = 4.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 65  AGRPKKITGFQTHSTSVLLAAGDRAELATEKYIPISPVLEAF 106
           A RPK+       S+S++L + D ++   EK IPI    EAF
Sbjct: 36  AFRPKR------RSSSLVLCSTDESKSTAEKEIPIELRYEAF 71


>At1g36940 hypothetical protein
          Length = 181

 Score = 25.4 bits (54), Expect = 4.8
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 14/64 (21%)

Query: 31 ILLQKPTML--LTVGENLKPLLVPLRVGQ------------AVDVVGQAGRPKKITGFQT 76
          +  Q+PT L  L    ++K + +P +  Q             +  +GQ  R  KITGF T
Sbjct: 8  VQFQRPTFLPMLCSRPSIKNVTLPAKSHQDDSYQQADPLSPKISCIGQVKRSNKITGFPT 67

Query: 77 HSTS 80
           +T+
Sbjct: 68 TTTT 71


>At5g25910 disease resistance protein - like
          Length = 811

 Score = 25.0 bits (53), Expect = 6.3
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 21  LAMQLTLGYYILLQKPTMLLTVGEN---LKPL 49
           +++ LT+GY ++  KP  L+  G N   +KP+
Sbjct: 780 ISIGLTMGYILVSYKPEWLMNSGRNKRRIKPI 811


>At3g24060 hypothetical protein
          Length = 147

 Score = 25.0 bits (53), Expect = 6.3
 Identities = 10/26 (38%), Positives = 19/26 (72%)

Query: 15 VLYFLVLAMQLTLGYYILLQKPTMLL 40
          +L F+++A+ LT+ + ++LQ  TM L
Sbjct: 9  LLLFMLIAISLTIIFTLMLQPQTMFL 34


>At2g17910 putative non-LTR retroelement reverse transcriptase
          Length = 1344

 Score = 25.0 bits (53), Expect = 6.3
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 36  PTMLLTVGENLKPLLVPLRVGQAVDVVGQAGRPKKITGFQTHSTSV 81
           PT  +  G+ L P L  L     + ++ +A +  KITG Q     V
Sbjct: 607 PTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKV 652


>At2g13675 callose synthase (1,3-beta-glucan synthase) like protein
          Length = 1939

 Score = 25.0 bits (53), Expect = 6.3
 Identities = 17/57 (29%), Positives = 30/57 (51%), Gaps = 2/57 (3%)

Query: 14   YVLYFLVLAMQLTLGYYILLQK--PTMLLTVGENLKPLLVPLRVGQAVDVVGQAGRP 68
            + L F +L + L +G  +++      + LTVG+ ++ LL  L  G A+  + Q  RP
Sbjct: 1814 FQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDIMQSLLAFLPTGWALLQISQVARP 1870


>At1g17020 SRG1-like protein
          Length = 358

 Score = 25.0 bits (53), Expect = 6.3
 Identities = 14/49 (28%), Positives = 25/49 (50%), Gaps = 7/49 (14%)

Query: 67  RPKKITGFQTHSTSV----LLAAGDRAELATEK---YIPISPVLEAFVI 108
           +P ++ G   HS SV    L+   D   L  +K   ++P+ P+  AF++
Sbjct: 223 QPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIV 271


>At4g14070 A6 anther-specific protein (Z97335.16)
          Length = 727

 Score = 24.6 bits (52), Expect = 8.2
 Identities = 14/38 (36%), Positives = 23/38 (59%), Gaps = 5/38 (13%)

Query: 35  KPTMLLTVGENLKPLLVP-----LRVGQAVDVVGQAGR 67
           K T++L+ GEN++PL +       RV + + V+GQ  R
Sbjct: 605 KDTIVLSTGENVEPLEIEEAAMRSRVIEQIVVIGQDRR 642


>At1g65280 
          Length = 605

 Score = 24.6 bits (52), Expect = 8.2
 Identities = 12/22 (54%), Positives = 15/22 (67%)

Query: 42  VGENLKPLLVPLRVGQAVDVVG 63
           VG +LK LL  +  GQAVD+ G
Sbjct: 125 VGNDLKQLLKMIDDGQAVDIKG 146


>At1g22220 unknown protein
          Length = 314

 Score = 24.6 bits (52), Expect = 8.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 86  GDRAELATEKYIPISPVLEAFVILKEC 112
           GD AELATE ++      EA V L +C
Sbjct: 278 GDDAELATEAFVGDCMYGEAVVALLKC 304


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.333    0.149    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,158,705
Number of Sequences: 26719
Number of extensions: 72287
Number of successful extensions: 206
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 15
length of query: 112
length of database: 11,318,596
effective HSP length: 88
effective length of query: 24
effective length of database: 8,967,324
effective search space: 215215776
effective search space used: 215215776
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 52 (24.6 bits)


Medicago: description of AC146719.10