BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146711.3 - phase: 0
(61 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60170 putative protein 52 7e-08
At4g16020 retrotransposon like protein 51 9e-08
At1g53810 51 9e-08
At1g32590 hypothetical protein, 5' partial 51 1e-07
At1g34100 putative protein 50 2e-07
At1g34090 putative protein 50 2e-07
At4g10690 retrotransposon like protein 48 8e-07
At1g31210 putative reverse transcriptase 48 8e-07
At1g70010 hypothetical protein 48 1e-06
orf240b -mitochondrial genome- 47 1e-06
At2g07683 putative protein 47 1e-06
At1g59265 polyprotein, putative 47 2e-06
At1g58889 polyprotein, putative 47 2e-06
At3g61330 copia-type polyprotein 45 5e-06
At1g58140 hypothetical protein 45 5e-06
At1g48710 hypothetical protein 45 5e-06
At4g27210 putative protein 45 7e-06
At4g27200 putative protein 45 7e-06
At4g14460 retrovirus-related like polyprotein 45 7e-06
At2g04490 putative retroelement pol polyprotein 45 7e-06
>At3g60170 putative protein
Length = 1339
Score = 51.6 bits (122), Expect = 7e-08
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAA 60
D+DYAGD +R+STSG + W+ +KQ +ALSTTEAEY +AA
Sbjct: 1186 DSDYAGDLNDRRSTSGFVFLMASGAICWASKKQPVVALSTTEAEYIAAA 1234
>At4g16020 retrotransposon like protein
Length = 326
Score = 51.2 bits (121), Expect = 9e-08
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYES 58
D+D+ G K R+ST G C FL L WS +KQ T++ S+TEAEY S
Sbjct: 112 DSDWGGCKDTRRSTGGYCTFLGTNLISWSSKKQPTVSRSSTEAEYRS 158
>At1g53810
Length = 1522
Score = 51.2 bits (121), Expect = 9e-08
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYES 58
D+DYA K R+S G C F+ Q + WS +KQ T++ S+TEAEY S
Sbjct: 1282 DSDYANCKETRRSVGGYCTFMGQNIISWSSKKQPTVSRSSTEAEYRS 1328
>At1g32590 hypothetical protein, 5' partial
Length = 1263
Score = 50.8 bits (120), Expect = 1e-07
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 11 LDADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAA 60
+D+DYAGD +RKSTSG L W+ +KQ + LSTTEAE+ SA+
Sbjct: 1111 VDSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSAS 1160
>At1g34100 putative protein
Length = 672
Score = 50.4 bits (119), Expect = 2e-07
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
DAD+ G R+STSG C FL L WS ++Q +++ S+ EAEY++ A+
Sbjct: 304 DADWVGCPNTRRSTSGYCVFLRDTLISWSSKRQGSVSRSSAEAEYKAVAN 353
>At1g34090 putative protein
Length = 761
Score = 50.1 bits (118), Expect = 2e-07
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYES 58
D+DY G K R+ST+G C F + W +KQ T+A S+TEAEY +
Sbjct: 494 DSDYGGCKRTRRSTAGFCTFFGSNIISWCSQKQETVARSSTEAEYRA 540
>At4g10690 retrotransposon like protein
Length = 1515
Score = 48.1 bits (113), Expect = 8e-07
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYES 58
D+D+AG K R+ST G C FL + WS ++ T++ S+TEAEY +
Sbjct: 1275 DSDWAGCKDTRRSTGGFCTFLGYNIISWSAKRHPTVSKSSTEAEYRT 1321
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 48.1 bits (113), Expect = 8e-07
Identities = 22/47 (46%), Positives = 32/47 (67%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYES 58
D+D+AG K R+ST+G C L L WS ++Q T++ S+TEAEY +
Sbjct: 1215 DSDHAGCKNTRRSTTGFCILLGSNLISWSAKRQPTVSNSSTEAEYRA 1261
>At1g70010 hypothetical protein
Length = 1315
Score = 47.8 bits (112), Expect = 1e-06
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYES 58
+ADY + R+STSG C FL +L W RKQ+ ++ S+ EAEY S
Sbjct: 1162 NADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYRS 1208
>orf240b -mitochondrial genome-
Length = 240
Score = 47.4 bits (111), Expect = 1e-06
Identities = 21/49 (42%), Positives = 32/49 (64%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAA 60
D+D+AG R+ST+G C FL + WS ++Q T++ S+TE EY + A
Sbjct: 169 DSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALA 217
>At2g07683 putative protein
Length = 385
Score = 47.4 bits (111), Expect = 1e-06
Identities = 21/49 (42%), Positives = 32/49 (64%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAA 60
D+D+AG R+ST+G C FL + WS ++Q T++ S+TE EY + A
Sbjct: 314 DSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALA 362
>At1g59265 polyprotein, putative
Length = 1466
Score = 46.6 bits (109), Expect = 2e-06
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
DAD+AGDK + ST+G +L WS +KQ + S+TEAEY S A+
Sbjct: 1314 DADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1363
>At1g58889 polyprotein, putative
Length = 1466
Score = 46.6 bits (109), Expect = 2e-06
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
DAD+AGDK + ST+G +L WS +KQ + S+TEAEY S A+
Sbjct: 1314 DADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1363
>At3g61330 copia-type polyprotein
Length = 1352
Score = 45.4 bits (106), Expect = 5e-06
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+D+ GD +RKSTSG ++ W +KQ + LST EAEY +A S
Sbjct: 1195 DSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATS 1244
>At1g58140 hypothetical protein
Length = 1320
Score = 45.4 bits (106), Expect = 5e-06
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+D+ GD +RKSTSG ++ W +KQ + LST EAEY +A S
Sbjct: 1163 DSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATS 1212
>At1g48710 hypothetical protein
Length = 1352
Score = 45.4 bits (106), Expect = 5e-06
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAAS 61
D+D+ GD +RKSTSG ++ W +KQ + LST EAEY +A S
Sbjct: 1195 DSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATS 1244
>At4g27210 putative protein
Length = 1318
Score = 45.1 bits (105), Expect = 7e-06
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYES 58
D+D+ K R+S G C F+ L WS +K T++ S+TEAEY+S
Sbjct: 1071 DSDWGNCKQTRRSVGGLCTFMGTNLVSWSSKKHPTVSRSSTEAEYKS 1117
>At4g27200 putative protein
Length = 819
Score = 45.1 bits (105), Expect = 7e-06
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYES 58
D+D+ K R+S G C F+ L WS +K T++ S+TEAEY+S
Sbjct: 572 DSDWGNCKQTRRSVGGLCTFMGTNLVSWSSKKHPTVSRSSTEAEYKS 618
>At4g14460 retrovirus-related like polyprotein
Length = 1489
Score = 45.1 bits (105), Expect = 7e-06
Identities = 22/49 (44%), Positives = 30/49 (60%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAA 60
DAD+A K R+S SG C +L +L W +KQ + S+TE+EY S A
Sbjct: 1331 DADWAACKDTRRSISGFCIYLGTSLISWKSKKQAVASRSSTESEYRSMA 1379
>At2g04490 putative retroelement pol polyprotein
Length = 1015
Score = 45.1 bits (105), Expect = 7e-06
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 12 DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYES 58
DAD+A + R+STSG C FL +++ W +KQ + S+ E+EY +
Sbjct: 933 DADWASCRDSRRSTSGYCMFLGESMISWKSKKQQMASHSSAESEYRA 979
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.332 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,084,755
Number of Sequences: 26719
Number of extensions: 26956
Number of successful extensions: 177
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 65
length of query: 61
length of database: 11,318,596
effective HSP length: 37
effective length of query: 24
effective length of database: 10,329,993
effective search space: 247919832
effective search space used: 247919832
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 52 (24.6 bits)
Medicago: description of AC146711.3