BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146705.12 - phase: 0 /pseudo
(811 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g37060 Athila retroelment ORF 1, putative 1050 0.0
At2g06320 putative retroelement pol polyprotein 594 e-170
At2g13060 pseudogene 489 e-138
At2g14040 putative retroelement pol polyprotein 471 e-133
At2g10690 putative retroelement pol polyprotein 466 e-131
At2g12040 T10J7.2 429 e-120
At4g07600 411 e-115
At2g11680 putative retroelement pol polyprotein 364 e-100
At2g10780 pseudogene 348 5e-96
At3g11970 hypothetical protein 343 2e-94
At2g04670 putative retroelement pol polyprotein 341 8e-94
At1g36590 hypothetical protein 338 5e-93
At1g35370 hypothetical protein 323 3e-88
At2g07410 putative retroelement pol polyprotein 302 6e-82
At4g07610 278 1e-74
At4g07660 putative athila transposon protein 271 1e-72
At4g10580 putative reverse-transcriptase -like protein 268 1e-71
At2g14650 putative retroelement pol polyprotein 259 3e-69
At2g06890 putative retroelement integrase 252 7e-67
At2g07420 putative retroelement pol polyprotein 244 2e-64
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 1050 bits (2714), Expect = 0.0
Identities = 506/796 (63%), Positives = 617/796 (76%), Gaps = 62/796 (7%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
N A+RK+HFPLPFID MLERLA H ++C+LD YSGFFQIPIHPNDQ KTTFTCP+GTFAY
Sbjct: 978 NVASRKEHFPLPFIDHMLERLANHPYYCFLDSYSGFFQIPIHPNDQGKTTFTCPYGTFAY 1037
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
+RMPFGLCNAPATFQRCM SIFSD +E+++EVFMDDFSV+GS+F CL NL +VL+RCE+
Sbjct: 1038 KRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSSFSSCLLNLCRVLKRCEE 1097
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
NLVLNWEKCHFMVREGIVLG + + GIEVD+AKI+++ ++ PP +VK+IRSFLGHAGF
Sbjct: 1098 TNLVLNWEKCHFMVREGIVLGRKISEEGIEVDKAKIDVMMQLQPPKTVKDIRSFLGHAGF 1157
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YR FIKDFS + +PLT LL K+ +F FDD CL AF +KEALITAPI+Q P+W+ PFEI+
Sbjct: 1158 YRIFIKDFSKLARPLTRLLCKETEFAFDDECLTAFKLIKEALITAPIVQAPNWDFPFEII 1217
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVG 300
T+D AQV YATTEKELLAVV+A +KFR YLVG
Sbjct: 1218 ----------------------------TMDDAQVRYATTEKELLAVVFAFEKFRSYLVG 1249
Query: 301 SKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETN 360
SK+ +YTDH+A++++ KKD KPRL+RWILLLQEFD+EI DKKG+EN VADHLSR+R
Sbjct: 1250 SKVTIYTDHAALRHIYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGVADHLSRMR--I 1307
Query: 361 KDELPLDDSFPDDQLFLLAQTD---APWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHY 417
+DE+ +DDS P++QL + Q + PWYAD VN+L +G PP L+ +KKKFF D+ H+
Sbjct: 1308 EDEVLIDDSMPEEQLMAIQQLNEKKLPWYADHVNYLVSGEEPPNLSSYEKKKFFKDINHF 1367
Query: 418 YWDEPYLFRRGSDGIFRRCIPENEVSSILTHCHSSSYGGHASTQKTSFKILHSGFWWPSL 477
YWDEPYL+ D I+R C+ E+E+ IL HCH +YGGH +T KT KIL +GFWWPS+
Sbjct: 1368 YWDEPYLYTLCKDKIYRTCVSEDEIEGILLHCHGFAYGGHFATFKTMSKILQAGFWWPSM 1427
Query: 478 FKDVHLFISKCDKCQRTGSITKRNEMPLNNILEVEIFDVWGIDFMGPFPSSFGNQYILVA 537
FKD FISKCD E FDVWGIDFMGPFPSS+GN+YILVA
Sbjct: 1428 FKDAQEFISKCD--------------------SFENFDVWGIDFMGPFPSSYGNKYILVA 1467
Query: 538 VDYVSKWVEAIASPTNDAQVVIKMFKKVIFPRFGVPRVVISDGGSHFISRHFEKLLQKLG 597
+DYVSKWVEAIAS TNDA+VV+K+FK +IFPRFGVPR+VISDGG HFI++ FE LL+K G
Sbjct: 1468 IDYVSKWVEAIASHTNDARVVLKLFKTIIFPRFGVPRIVISDGGKHFINKGFENLLKKHG 1527
Query: 598 VRHKIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIGM 657
V+HK TSGQVE+SNR+IKAILEKTV ++R DWS KL+D LWAYRTA+KTPIG
Sbjct: 1528 VKHK--------TSGQVEISNREIKAILEKTVGSTRKDWSAKLNDTLWAYRTAFKTPIGT 1579
Query: 658 TPFKLVYGKSCHLPVELEHKAYWAIRNLNLDPNLAGDKRKLQLNELEELRMDAYENARIY 717
TPF L+YGKSCHLPVELE+KA WA++ LN D A +KR +QLN+L ++R++AYE+++IY
Sbjct: 1580 TPFNLLYGKSCHLPVELEYKAMWAVKLLNFDIKTAEEKRLIQLNDLNKIRLEAYESSKIY 1639
Query: 718 KERTKTWHDKKIIKRHFKSGDLVLLFNSRLKLFPGKLRSRWSGPFQVRTVYPYGAIEIFS 777
KERTK++HDKKI+ R FK GD VLLFNSRL+LFPGKL+SRWSGPF V V PYGAI + +
Sbjct: 1640 KERTKSFHDKKIVSRDFKVGDQVLLFNSRLRLFPGKLKSRWSGPFSVTAVRPYGAITL-A 1698
Query: 778 EETGSFTVNGQRLKIY 793
+ G FTVNGQRLK Y
Sbjct: 1699 GKNGDFTVNGQRLKKY 1714
>At2g06320 putative retroelement pol polyprotein
Length = 466
Score = 594 bits (1532), Expect = e-170
Identities = 278/427 (65%), Positives = 342/427 (79%), Gaps = 1/427 (0%)
Query: 383 APWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYWDEPYLFRRGSDGIFRRCIPENEV 442
+PWYAD VN+LA G+ PP L ++K FF D+ HYYWDEPYL+ D I+R + E+EV
Sbjct: 37 SPWYADHVNYLACGIEPPNLTSYERKNFFRDIHHYYWDEPYLYTLCKDKIYRSYVSEDEV 96
Query: 443 SSILTHCHSSSYGGHASTQKTSFKILHSGFWWPSLFKDVHLFISKCDKCQRTGSITKRNE 502
IL HCH S+YGGH +T KT KIL +GFWWP++FKD F+SKCD CQR G+I++RNE
Sbjct: 97 EGILLHCHDSAYGGHFATFKTVSKILQAGFWWPTMFKDAQEFVSKCDSCQRKGNISRRNE 156
Query: 503 MPLNNILEVEIFDVWGIDFMGPFPSSFGNQYILVAVDYVSKWVEAIASPTNDAQVVIKMF 562
MP N ILEV+IFDVWGIDFMGPFPSS+GN+YILV VDYVSKWVEAIASPTNDA+VV+K+F
Sbjct: 157 MPQNPILEVDIFDVWGIDFMGPFPSSYGNKYILVVVDYVSKWVEAIASPTNDAKVVLKLF 216
Query: 563 KKVIFPRFGVPRVVISDGGSHFISRHFEKLLQKLGVRHKIATPYHPQTSGQVEVSNRQIK 622
K +IFPRFGV VVISDGG HFI++ FE LL+K GV+HK+ATPYHPQTSGQVE+SNR+IK
Sbjct: 217 KTIIFPRFGVSWVVISDGGKHFINKVFENLLKKHGVKHKVATPYHPQTSGQVEISNREIK 276
Query: 623 AILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIGMTPFKLVYGKSCHLPVELEHKAYWAI 682
ILEKTV +R DWS KLDDALWAY+TA+KTPIG TPF L+ KSCHL VELE+KA WA+
Sbjct: 277 TILEKTVGITRKDWSTKLDDALWAYKTAFKTPIGTTPFNLLCVKSCHLHVELEYKAMWAV 336
Query: 683 RNLNLDPNLAGDKRKLQLNELEELRMDAYENARIYKERTKTWHDKKIIKRHFKSGDLVLL 742
+ LN D A +KR +QL+EL+E+R++AYE+++IYKERTK +HDKKII + F+ GD VLL
Sbjct: 337 KLLNFDIKTAEEKRLIQLSELDEIRLEAYESSKIYKERTKLFHDKKIITKDFQVGDQVLL 396
Query: 743 FNSRLKLFPGKLRSRWSGPFQVRTVYPYGAIEIFSEETGSFTVNGQRLKIYNTGEVNEVV 802
FNSRLK+FPGKL+SRWSGPF + V PYGA+ + + ++G FTVNGQRLK Y ++ V
Sbjct: 397 FNSRLKIFPGKLKSRWSGPFCITEVRPYGAVTL-AGKSGVFTVNGQRLKKYLANQILPEV 455
Query: 803 ADFTLSD 809
L +
Sbjct: 456 TSIHLQE 462
>At2g13060 pseudogene
Length = 930
Score = 489 bits (1259), Expect = e-138
Identities = 228/364 (62%), Positives = 282/364 (76%), Gaps = 6/364 (1%)
Query: 380 QTDAPWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYWDEPYLFRRGSDGIFRRCIPE 439
+ D PWYAD VN+LAA V P KK+F +++ Y WDEPYL++ DGI+RRCI
Sbjct: 133 EKDYPWYADIVNYLAADVEPDNFTDYNKKRFLREIRRYQWDEPYLYKHSYDGIYRRCIAA 192
Query: 440 NEVSSILTHCHSSSYGGHASTQKTSFKILHSGFWWPSLFKDVHLFISKCDKCQRTGSITK 499
EV SIL+HCHSSSYGGH +T KT K+L + FWWP++F+D FIS+CD CQR G I+K
Sbjct: 193 TEVPSILSHCHSSSYGGHFATFKTVSKVLQADFWWPTMFRDTQKFISQCDPCQRRGKISK 252
Query: 500 RNEMPLNNILEVEIFDVWGIDFMGPFPSSFGNQYILVAVDYVSKWVEAIASPTNDAQVVI 559
RNEMP N LEVE+FD WGIDFMGPFP S N YILV VDYVSKWVEAIAS ND+ VV+
Sbjct: 253 RNEMPPNFRLEVEVFDRWGIDFMGPFPPSNKNLYILVDVDYVSKWVEAIASLKNDSAVVM 312
Query: 560 KMFKKVIFPRFGVPRVVISDGGSHFISRHFEKLLQKLGVRHKIATPYHPQTSGQVEVSNR 619
K+FK +IFPRFGVPR+VISDG HFI++ EKLL + GV+H++ATPYHPQTSGQVEVSNR
Sbjct: 313 KLFKSIIFPRFGVPRIVISDGDKHFINKILEKLLLQYGVQHRVATPYHPQTSGQVEVSNR 372
Query: 620 QIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIGMTPFKLVYGKSCHLPVELEHKAY 679
QIK ILEKTV ++ +WS KL DALWAY+TA+KTP+G TPF L+YGK+CHLPVELEHKA
Sbjct: 373 QIKEILEKTVGKAKKEWSYKLYDALWAYKTAFKTPLGTTPFHLLYGKACHLPVELEHKAA 432
Query: 680 WAIRNLNLDPNLAGDKRKLQLNELEELRMDAYENARIYKERTKTWHDKKIIKRHFKSGDL 739
WA++ +N D AG+ +EL+E+R+ AY+N+++YKERTK +HDKKI+ R F+ D
Sbjct: 433 WAVKMMNFDIKSAGE------SELDEIRIHAYDNSKLYKERTKAYHDKKILTRTFEPNDQ 486
Query: 740 VLLF 743
+L F
Sbjct: 487 ILRF 490
Score = 83.6 bits (205), Expect = 4e-16
Identities = 37/63 (58%), Positives = 53/63 (83%), Gaps = 2/63 (3%)
Query: 316 LNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETNKDELPLDDSFPDDQL 375
+ KKDAKPRL+ WILLLQEFD+E++DKKGVEN VADHLSR+R D++P++D P++ +
Sbjct: 1 MQKKDAKPRLLIWILLLQEFDIEVRDKKGVENGVADHLSRIR--IDDDVPINDFLPEENI 58
Query: 376 FLL 378
+++
Sbjct: 59 YMI 61
>At2g14040 putative retroelement pol polyprotein
Length = 841
Score = 471 bits (1212), Expect = e-133
Identities = 246/435 (56%), Positives = 300/435 (68%), Gaps = 77/435 (17%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
N ATRKD+FPL FIDQMLERL+ ++C+LDGY GFFQI IHP+DQEKTTFTCP+GTFAY
Sbjct: 453 NSATRKDNFPLSFIDQMLERLSNQPYYCFLDGYLGFFQILIHPDDQEKTTFTCPYGTFAY 512
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
RRMPFGLCNAPATFQ CM IFSD +E MEVF+DDF VL+RCE
Sbjct: 513 RRMPFGLCNAPATFQHCMKYIFSDMIEDFMEVFIDDF---------------LVLQRCED 557
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
+LVLNWEK HFMVR+GIVLGH + ++G+EVDRAKIEI++ FLGHAGF
Sbjct: 558 KHLVLNWEKSHFMVRDGIVLGHKISEKGVEVDRAKIEIMR-------------FLGHAGF 604
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YRRFIKDFS I +P T LL K+ FDD+CLQAF +KE+L++A I+QPP+W LPFE++
Sbjct: 605 YRRFIKDFSKIARPCTQLLCKEQKSEFDDTCLQAFNIVKESLVSALIVQPPEWELPFEVI 664
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVG 300
CDASDY VGAVLGQR DKK+HAIYYAS+TLDGAQV
Sbjct: 665 CDASDYVVGAVLGQRKDKKLHAIYYASRTLDGAQV------------------------- 699
Query: 301 SKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETN 360
IV+T H+A++YLL+KKDAKPRL+RWILLLQ+FDLEIKDKKG+EN VAD+LSRLR
Sbjct: 700 ---IVHTVHAALRYLLSKKDAKPRLLRWILLLQDFDLEIKDKKGIENEVADNLSRLRVQE 756
Query: 361 ----KDELP------LDDSFPDD---------QLFLL--AQTDAPWYADFVNFLAAGVLP 399
+D LP ++D + D+ +L L +++ PWYADF N+L+ V P
Sbjct: 757 EVLMRDILPGENLASIEDCYMDEVGRLRVSTLELMTLHTGESNLPWYADFANYLSCEVPP 816
Query: 400 PELNYQQKKKFFNDL 414
P+ KKK ++
Sbjct: 817 PDFTGYFKKKLLKEV 831
>At2g10690 putative retroelement pol polyprotein
Length = 622
Score = 466 bits (1198), Expect = e-131
Identities = 231/382 (60%), Positives = 288/382 (74%), Gaps = 27/382 (7%)
Query: 46 QEKTTFTCPFGTFAYRRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFD 105
++KTTFTCP GTFAY+RM FGLCNAP TFQR M SIFSDF+E+IMEVFMDDFS F
Sbjct: 163 KKKTTFTCPNGTFAYKRMSFGLCNAPGTFQRSMTSIFSDFIEEIMEVFMDDFS----GFS 218
Query: 106 DCLTNLEKVLERCEQVNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPP 165
CL NL +VLERCE+ NLVLNWEKCHFMV EGIVLGH + +GIEVD+AKI+++ ++ PP
Sbjct: 219 SCLLNLCRVLERCEETNLVLNWEKCHFMVHEGIVLGHKISGKGIEVDKAKIDVMIQLQPP 278
Query: 166 TSVKEIRSFLGHAGFYRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITA 225
+VK+IRSFLGHA FYRRFIKDFS I +PLT LL K+ +F FD+ CL+AF +KE L++A
Sbjct: 279 KTVKDIRSFLGHAEFYRRFIKDFSKIARPLTRLLCKETEFNFDEDCLKAFHLIKETLVSA 338
Query: 226 PIIQPPDWNLPFEIMCDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELL 285
PI Q P+W+ PFEIMCDA DYAVGAVL Q+ D K+H IYYAS+T+D AQ YAT EKELL
Sbjct: 339 PIFQAPNWDHPFEIMCDAFDYAVGAVLDQKIDDKLHVIYYASRTMDEAQTRYATIEKELL 398
Query: 286 AVVYAIDKFRQYLVGSKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGV 345
AVV+A +K R YLVG K+ VY DH+A++++ KK+ K RL+RWILLLQEFD+EI DKKGV
Sbjct: 399 AVVFAFEKIRSYLVGFKVKVYIDHAALRHIYAKKETKSRLLRWILLLQEFDMEIIDKKGV 458
Query: 346 ENVVADHLSRLRETNKDELPLDDSFPDDQLFL-------------------LAQTDAPWY 386
EN VADHLSR+R +D +P+DD+ P++QL + + PWY
Sbjct: 459 ENGVADHLSRMR--IEDSVPIDDTMPEEQLMFYDLVNKSFDTKDMPEEADAVEEEKLPWY 516
Query: 387 ADFVNFLAAGVLPPELNYQQKK 408
AD VN+L +G + E++ +Q K
Sbjct: 517 ADLVNYLTSGQV--EVSNRQMK 536
Score = 140 bits (354), Expect = 2e-33
Identities = 66/98 (67%), Positives = 80/98 (81%)
Query: 610 TSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIGMTPFKLVYGKSCH 669
TSGQVEVSNRQ+K IL K V S+ DWS KLD+ LWAYRTAYKTPIG TPF+++YGKSCH
Sbjct: 524 TSGQVEVSNRQMKDILTKVVGVSKRDWSTKLDETLWAYRTAYKTPIGRTPFQMLYGKSCH 583
Query: 670 LPVELEHKAYWAIRNLNLDPNLAGDKRKLQLNELEELR 707
LPVE+E+KA WA + LNL+ A +KR + L+ELEE+R
Sbjct: 584 LPVEVEYKAIWATKLLNLEIKGAQEKRPIDLHELEEIR 621
>At2g12040 T10J7.2
Length = 976
Score = 429 bits (1103), Expect = e-120
Identities = 202/304 (66%), Positives = 254/304 (83%), Gaps = 2/304 (0%)
Query: 75 QRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQVNLVLNWEKCHFMV 134
+R MMSIF+D +E IMEVFMDDFSV+GS F+DCL NL KVL RCE+ +LVLNWEKCHF V
Sbjct: 79 ERGMMSIFTDMIEDIMEVFMDDFSVYGSLFEDCLENLYKVLARCEEKHLVLNWEKCHFRV 138
Query: 135 REGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGFYRRFIKDFSSITKP 194
++GIVLGH + + GIE DRAKIE++ + ++K +RSFLGHAGFYRRFIKDFS I +P
Sbjct: 139 QDGIVLGHRISEYGIEADRAKIEVMTSLQALDNLKAVRSFLGHAGFYRRFIKDFSKIARP 198
Query: 195 LTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIMCDASDYAVGAVLGQ 254
LTSLL K+ F F C AF ++K+ALI+API+QPPDW+LPFE+MCDASD+AVGAVLGQ
Sbjct: 199 LTSLLCKEVKFEFTQECHDAFQQIKQALISAPIVQPPDWDLPFEVMCDASDFAVGAVLGQ 258
Query: 255 RNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVGSKIIVYTDHSAIKY 314
R DKK+HAIYYAS+TLD A+ NYATTEKE LAVV+A +KFR YLVG K+IV+TDH+A+KY
Sbjct: 259 RKDKKLHAIYYASRTLDDAKRNYATTEKEFLAVVFAFEKFRSYLVGLKVIVHTDHAALKY 318
Query: 315 LLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETNKDELPLDDSFPDDQ 374
L+ KDAKPRL+RWILLLQEFD+E++DKKGVE VADHLSR+R D++P++D P++
Sbjct: 319 LMQNKDAKPRLLRWILLLQEFDIEVRDKKGVEKCVADHLSRIR--IDDDVPINDFLPEEN 376
Query: 375 LFLL 378
++++
Sbjct: 377 IYMI 380
Score = 346 bits (887), Expect = 3e-95
Identities = 194/420 (46%), Positives = 255/420 (60%), Gaps = 54/420 (12%)
Query: 380 QTDAPWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYWDEPYLFRRGSDGIFRRCIPE 439
+ D PWYAD V +L A V KK+F +++ YYWD+PYL
Sbjct: 455 EKDYPWYADIVIYLGADVELDNFIDYNKKRFLREIRRYYWDKPYL--------------- 499
Query: 440 NEVSSILT------HCHSSSYGGHASTQKTSFKILHSGFWWPSLFKDVHLFISKCDKCQR 493
+S +L HC + S Q +S ++L + + S ++H+ D CQR
Sbjct: 500 -PISIVLMEFIGEMHCCNRD-----SIQSSSSRLLVA--YNVSGCSEIHI---ASDPCQR 548
Query: 494 TGSITKRNEMPLNNILEVEIFDVWGIDFMGPFPSSFGNQYILVAVDYVSKWVEAIASPTN 553
G I+ NEMP ILEV++FD WGI+FMGP P S N YILV VDYVSKWVEAIASP N
Sbjct: 549 RGKISNCNEMPQKFILEVKVFDCWGINFMGPIPPSNKNLYILVVVDYVSKWVEAIASPKN 608
Query: 554 DAQVVIKMFKKVIFPRFGVPRVVISDGGSHFISRHFEKLLQKLGVRHKIATPYHPQTSGQ 613
D+ VV+K+FK +IFP FGVPR+VISDGG HFI++ KLL + GV+H++ATPYHPQTSGQ
Sbjct: 609 DSAVVMKLFKCIIFPHFGVPRIVISDGGKHFINKILTKLLLQYGVQHRVATPYHPQTSGQ 668
Query: 614 VEVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIGMTPFKLVYGKSCHLPVE 673
VEVSNRQIK ILEKTV A+KTP+G TPF L+YGK+CHLPVE
Sbjct: 669 VEVSNRQIKEILEKTV--------------------AFKTPLGTTPFHLLYGKACHLPVE 708
Query: 674 LEHKAYWAIRNLNLDPNLAGDKRKLQLNELEELRMDAYENARIYKERTKTWHDKKIIKRH 733
LEHKA W ++ LN D AG++R +QLNEL+E+++ AY+N+++YKERTK +HDKKI+ R
Sbjct: 709 LEHKAAWTVKMLNFDIKSAGERRLIQLNELDEIQIHAYDNSKLYKERTKAYHDKKILTRT 768
Query: 734 FKSGDLVLLFNSRLKLFPGKLRSRWSGPFQVRTVYPYGAIEIFSEE--TGSFTVNGQRLK 791
F+ D K F G+ + + ++ + I EE T FT++ LK
Sbjct: 769 FEPKDQKKKKTRETKPFKGRGKKSERVGSLLIPIFEHFRIRFEGEEVNTTRFTMDESYLK 828
>At4g07600
Length = 630
Score = 411 bits (1057), Expect = e-115
Identities = 191/284 (67%), Positives = 227/284 (79%), Gaps = 18/284 (6%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
N A+R DHFPLPF DQMLERLA H ++C+LDGYSGFFQIPIHPND EKTTFTCP+GTFAY
Sbjct: 365 NAASRNDHFPLPFTDQMLERLANHPYYCFLDGYSGFFQIPIHPNDHEKTTFTCPYGTFAY 424
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
RMPFGLCNAPATFQRCM SIFSD +E+++EVFMDDFSV+G +F CL NL +VL RCE+
Sbjct: 425 ERMPFGLCNAPATFQRCMTSIFSDIIEEMVEVFMDDFSVYGPSFSSCLLNLGRVLTRCEE 484
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
NLVLNWEKCHFMV+EGI+LGH + ++GIEVD+ FLGHAGF
Sbjct: 485 TNLVLNWEKCHFMVKEGIMLGHKISEKGIEVDKG------------------CFLGHAGF 526
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YRRFIKDFS I +PLT LL K+ +F FD+ C ++F +KEAL++AP+++ +W+ PFEIM
Sbjct: 527 YRRFIKDFSKIARPLTRLLCKETEFEFDEDCPKSFHTIKEALVSAPVVRATNWDYPFEIM 586
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKEL 284
CDA DYAVGAVLGQ+ DKK+H IYYAS+TLD AQ YATTEKEL
Sbjct: 587 CDALDYAVGAVLGQKIDKKLHVIYYASRTLDEAQGRYATTEKEL 630
>At2g11680 putative retroelement pol polyprotein
Length = 301
Score = 364 bits (934), Expect = e-100
Identities = 176/303 (58%), Positives = 229/303 (75%), Gaps = 20/303 (6%)
Query: 133 MVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGFYRRFIKDFSSIT 192
MVREGIVLGH + +G++V++AK++++ ++ PP + K+IRSFLGHAGFYRRFIKDFS +
Sbjct: 1 MVREGIVLGHKISKKGVQVNKAKVDVMMQLQPPKTGKDIRSFLGHAGFYRRFIKDFSKLA 60
Query: 193 KPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIMCDASDYAVGAVL 252
+PLT LL K+A+F F++ CL AF KEAL++API+Q P+ + PFEIMCD SDYAVGAVL
Sbjct: 61 RPLTRLLCKEAEFIFEEECLTAFKSTKEALVSAPIVQAPNRDYPFEIMCDDSDYAVGAVL 120
Query: 253 GQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVGSKIIVYTDHSAI 312
GQ+ D+K+H IYYAS T+D QV YATTEKELLAVV+A +KFR YLVGSK+ VYTDH+A+
Sbjct: 121 GQKIDRKLHVIYYASGTMDDTQVRYATTEKELLAVVFAFEKFRSYLVGSKVTVYTDHAAL 180
Query: 313 KYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETNKDELPLDDSFPD 372
+++ KKD KPRL+RWILLLQEFD+EI DKKG+EN VADHLSR+R +DE+P+DDS P+
Sbjct: 181 RHIYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGVADHLSRMR--IEDEVPIDDSMPE 238
Query: 373 DQLFLLAQTDAP------------------WYADFVNFLAAGVLPPELNYQQKKKFFNDL 414
+QL + Q + WYAD V +L G PP L+ +KKKFF D+
Sbjct: 239 EQLMAIQQLNESAQINKSLDQVCAVEDKLMWYADHVKYLFGGEEPPNLSSYEKKKFFKDI 298
Query: 415 KHY 417
H+
Sbjct: 299 NHF 301
>At2g10780 pseudogene
Length = 1611
Score = 348 bits (894), Expect = 5e-96
Identities = 237/793 (29%), Positives = 402/793 (49%), Gaps = 62/793 (7%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
NK T K+ +PLP ID+++++L F +D SG+ QIPI P D KT F + F +
Sbjct: 719 NKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYDHFEF 778
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
MPFGL NAPA F + M +F DF+++ + +F++D V+ +++ +L VLER +
Sbjct: 779 VVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLRE 838
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
L KC F R LGH++ D+G+ VD KI IK+ P + EIRSFLG AG+
Sbjct: 839 HELFAKLSKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGY 898
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YRRF+ F+S+ +PLT L KD F + D C ++F LK L AP++ P+ P+ +
Sbjct: 899 YRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEGEPYTVY 958
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVG 300
DAS +G VL Q+ I YAS+ L + NY T + E+ AVV+ + +R YL G
Sbjct: 959 TDASIVGLGCVLMQKGS----VIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLYG 1014
Query: 301 SKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLR--- 357
+K+ +YTDH ++KY+ + + R RW+ L+ +++L+I G N VAD LSR R
Sbjct: 1015 AKVQIYTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGKANQVADALSRRRSEV 1074
Query: 358 ETNKDELPLDDSFPDDQLFLLAQTDAP---WYADFVNFLAAGVLPPELNYQQKKKFFNDL 414
E + ++ L + + L++ P AD + L+ L E + ++
Sbjct: 1075 EAERSQVDLVNMMGTLHVNALSKEVEPLGLGAADQADLLSRIRLAQERD--------EEI 1126
Query: 415 KHYYWDEPYLFRRGSDGIF----RRCIPENEV--SSILTHCHSSSYGGHASTQKTSFKIL 468
K + + ++ ++G R C+P + IL H S + H + K ++ L
Sbjct: 1127 KGWAQNNKTEYQTSNNGTIVVNGRVCVPNDRALKEEILREAHQSKFSIHPGSNK-MYRDL 1185
Query: 469 HSGFWWPSLFKDVHLFISKCDKCQRTGSITKRNEMPLNNILEVEI----FDVWGIDFMGP 524
+ W + KDV +++KC CQ + +++P + + I +D +DF+
Sbjct: 1186 KRYYHWVGMKKDVARWVAKCPTCQ---LVKAEHQVPSGLLQNLPIPEWKWDHITMDFVTG 1242
Query: 525 FPSSFGNQY--ILVAVDYVSKWVEAIA-SPTNDAQVVIKMFKKVIFPRFGVPRVVISDGG 581
P+ +++ + V VD ++K +A S + A+++ + + I G+P ++SD
Sbjct: 1243 LPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYIDEIVRLHGIPVSIVSDRD 1302
Query: 582 SHFISRHFEKLLQKLGVRHKIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLD 641
+ F S+ ++ + LG R ++T YHPQT Q E + + ++ +L V +W L
Sbjct: 1303 TRFTSKFWKAFQKALGTRVNLSTAYHPQTDEQSERTIQTLEDMLRACVLDWGGNWEKYLR 1362
Query: 642 DALWAYRTAYKTPIGMTPFKLVYGKSCHLPVELEHKAYWAIRNLNLDPNLAGDKRKLQLN 701
+AY +++ IGM+P++ +YG++C P+ + + L D+ ++
Sbjct: 1363 LVEFAYNNSFQASIGMSPYEALYGRACRTPL-----CWTPVGERRLFGPTIVDETTERMK 1417
Query: 702 ELEELRMDAYENARIYKERTKTWHDKKIIKRHFKSGDLVLL----------FNSRLKLFP 751
L+ +A ++R K++ +K+ + F+ GDLV L F SR KL P
Sbjct: 1418 FLKIKLKEA-------QDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSP 1470
Query: 752 GKLRSRWSGPFQV 764
R+ GP++V
Sbjct: 1471 -----RYVGPYKV 1478
>At3g11970 hypothetical protein
Length = 1499
Score = 343 bits (880), Expect = 2e-94
Identities = 252/776 (32%), Positives = 382/776 (48%), Gaps = 50/776 (6%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
N T KD FP+P I+ +++ L F +D +G+ Q+ + P+D +KT F G F Y
Sbjct: 661 NGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEY 720
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
MPFGL NAPATFQ M IF F+ K + VF DD V+ S+ ++ +L++V E
Sbjct: 721 LVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRA 780
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
L KC F V + LGH + +GIE D AKI+ +K+ PT++K++R FLG AG+
Sbjct: 781 NKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGY 840
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YRRF++ F I PL +L DA F + QAF LK AL AP++ P ++ F +
Sbjct: 841 YRRFVRSFGVIAGPLHALTKTDA-FEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVE 899
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVG 300
DA +GAVL Q H + Y S+ L G Q++ + EKELLAV++A+ K+R YL+
Sbjct: 900 TDACGQGIGAVLMQEG----HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQ 955
Query: 301 SKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETN 360
S I+ TD ++KYLL ++ P +W+ L EFD EI+ ++G ENVVAD LSR+
Sbjct: 956 SHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQGKENVVADALSRVE--G 1013
Query: 361 KDELPLDDSFPDDQLFLLAQTDAPWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYWD 420
+ L + + + L Q + + + A P+ KK+F+ W
Sbjct: 1014 SEVLHMAMTVVECDLLKDIQAGYANDSQLQDIITALQRDPD-----SKKYFS------WS 1062
Query: 421 EPYLFRRGSDGIFRRCIPENE--VSSILTHCHSSSYGGHASTQKTSFKILHSGFWWPSLF 478
+ L R+ + +P N+ ++IL H S GGH+ T ++ F+W +
Sbjct: 1063 QNILRRKS-----KIVVPANDNIKNTILLWLHGSGVGGHSGRDVTHQRV-KGLFYWKGMI 1116
Query: 479 KDVHLFISKCDKCQRTGSITKRNEMPLNNI-LEVEIFDVWGIDFMGPFPSSFGNQYILVA 537
KD+ +I C CQ+ S + L + + I+ +DF+ P S G I+V
Sbjct: 1117 KDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEGLPVSGGKTVIMVV 1176
Query: 538 VDYVSKWVEAIA-SPTNDAQVVIKMFKKVIFPRFGVPRVVISDGGSHFISRHFEKLLQKL 596
VD +SK IA S A V + +F G P ++SD F S + +
Sbjct: 1177 VDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQ 1236
Query: 597 GVRHKIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIG 656
GV K+ + YHPQ+ GQ EV NR ++ L WS L A + Y T Y +
Sbjct: 1237 GVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALAEYWYNTNYHSSSR 1296
Query: 657 MTPFKLVYGK--SCHLPVELEHKAYWAIRNLNLDPNLAGDKRKLQLNELEELRMDAYENA 714
MTPF++VYG+ HLP L + +A R LQ E E++ + +
Sbjct: 1297 MTPFEIVYGQVPPVHLPY------------LPGESKVAVVARSLQ--EREDMLLFLKFHL 1342
Query: 715 RIYKERTKTWHDKKIIKRHFKSGDLVLL------FNSRLKLFPGKLRSRWSGPFQV 764
+ R K + D+ +R F+ GD V + S + KL ++ GP+++
Sbjct: 1343 MRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKI 1398
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 341 bits (875), Expect = 8e-94
Identities = 236/774 (30%), Positives = 378/774 (48%), Gaps = 59/774 (7%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
N T K+ +PLP ID++L++L + F +D SG+ QIPI D KT F +G F +
Sbjct: 577 NWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEF 636
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
MPF L NAPA F R M S+F +F+++ + +F+DD V+ + ++ +L +V+E+ +
Sbjct: 637 VVMPFALTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLRE 696
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
L KC F RE LGH+V G+ VD KIE I+ PT+ EIRSFL G+
Sbjct: 697 QKLFAKLSKCSFWQREIGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLRLTGY 756
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YRRF+K F+S+ +P+T L KD F + C + F LKE L + P++ P+ P+ +
Sbjct: 757 YRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGQPYMVY 816
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVG 300
DAS +G VL QR I YAS+ L + NY T + E+ V++A+ +R YL G
Sbjct: 817 TDASRVGLGCVLMQRG----KVIAYASRQLRKHEGNYPTHDLEMAVVIFALKIWRSYLYG 872
Query: 301 SKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETN 360
K+ V+TDH ++KY+ N+ + R +RW+ L+ ++DLEI G NVVAD LSR R
Sbjct: 873 GKVQVFTDHKSLKYIFNQPELNLRQMRWMELVADYDLEIAYHPGKANVVADALSRKRVGA 932
Query: 361 KDELPLDDSFPD-DQLFLLAQTDAPWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYW 419
++ + L L P + V+ A +L Q+K +
Sbjct: 933 APGQSVEALVSEIGALRLCVVAREPLGLEAVD--RADLLTRARLAQEKDEGLIAASKAEG 990
Query: 420 DEPYLFRRGSDGIFRR-CIPENEV--SSILTHCHSSSYGGHASTQKTSFKILHSGFWWPS 476
E G+ ++ R C+P++E IL+ H+S + H K ++ L + W
Sbjct: 991 SEYQFAANGTIFVYGRVCVPKDEELRREILSEAHASMFSIHPGATK-MYRDLKRYYQWVG 1049
Query: 477 LFKDVHLFISKCDKCQRTGSITKRNEMPLNNILEVEIFDVWGIDFMGPFPSSFGNQYILV 536
+ +DV ++++CD CQ + +++P I V
Sbjct: 1050 MKRDVANWVAECDVCQ---LVKAEHQVP---------------------------DAIWV 1079
Query: 537 AVDYVSKWVEAIA-SPTNDAQVVIKMFKKVIFPRFGVPRVVISDGGSHFISRHFEKLLQK 595
+D ++K +A T+ A V+ K + I GVP ++SD S F + K
Sbjct: 1080 IMDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTFAFWRAFQAK 1139
Query: 596 LGVRHKIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTPI 655
+G + +++T YHPQT GQ E + + ++ +L V W++ L +AY +Y+ I
Sbjct: 1140 MGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQASI 1199
Query: 656 GMTPFKLVYGKSCHLPVELEHKAYWAIRNLNLDPNLAGDKRKLQLNELEELRMDAYENAR 715
GM PF+ +YG+ C P+ +I + R L+LN E
Sbjct: 1200 GMAPFEALYGRPCWTPLRWTQVEERSIYGADYVQETTERIRVLKLNMKEA---------- 1249
Query: 716 IYKERTKTWHDKKIIKRHFKSGDLVLLFNSRLK-----LFPGKLRSRWSGPFQV 764
+ R +++ DK+ + F+ GD V L + L+ + KL R+ GPF++
Sbjct: 1250 --QARQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSILETKLSPRYMGPFRI 1301
>At1g36590 hypothetical protein
Length = 1499
Score = 338 bits (868), Expect = 5e-93
Identities = 251/776 (32%), Positives = 382/776 (48%), Gaps = 50/776 (6%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
N T KD FP+P I+ +++ L F +D +G+ Q+ + P+D +KT F G F Y
Sbjct: 661 NGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEY 720
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
MPFGL NAPATFQ M IF F+ K + VF DD V+ S+ ++ +L++V E
Sbjct: 721 LVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRA 780
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
L KC F V + LGH + +GIE D AKI+ +K+ PT++K++R FLG AG+
Sbjct: 781 NKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGY 840
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YRRF++ F I PL +L DA F + QAF LK AL AP++ P ++ F +
Sbjct: 841 YRRFVRSFGVIAGPLHALTKTDA-FEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVE 899
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVG 300
DA +GAVL Q H + Y S+ L G Q++ + EKELLAV++A+ K+R YL+
Sbjct: 900 TDACGQGIGAVLMQEG----HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQ 955
Query: 301 SKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETN 360
S I+ TD ++KYLL ++ P +W+ L EFD EI+ ++G ENVVAD LSR+
Sbjct: 956 SHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQYRQGKENVVADALSRVE--G 1013
Query: 361 KDELPLDDSFPDDQLFLLAQTDAPWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYWD 420
+ L + + + L Q + + + A P+ KK+F+ W
Sbjct: 1014 SEVLHMAMTVVECDLLKDIQAGYANDSQLQDIITALQRDPD-----SKKYFS------WS 1062
Query: 421 EPYLFRRGSDGIFRRCIPENE--VSSILTHCHSSSYGGHASTQKTSFKILHSGFWWPSLF 478
+ L R+ + +P N+ ++IL H S GGH+ T ++ F+ +
Sbjct: 1063 QNILRRKS-----KIVVPANDNIKNTILLWLHGSGVGGHSGRDVTHQRV-KGLFYSKGMI 1116
Query: 479 KDVHLFISKCDKCQRTGSITKRNEMPLNNI-LEVEIFDVWGIDFMGPFPSSFGNQYILVA 537
KD+ +I C CQ+ S + L + + I+ +DF+ P S G I+V
Sbjct: 1117 KDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEGLPVSGGKTVIMVV 1176
Query: 538 VDYVSKWVEAIA-SPTNDAQVVIKMFKKVIFPRFGVPRVVISDGGSHFISRHFEKLLQKL 596
VD +SK IA S A V + + +F G P ++SD F S + +
Sbjct: 1177 VDRLSKAAHFIALSHPYSALTVAQAYLDNVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQ 1236
Query: 597 GVRHKIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTPIG 656
GV K+ + YHPQ+ GQ EV NR ++ L WS L A + Y T Y +
Sbjct: 1237 GVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALAEYWYNTNYHSSSR 1296
Query: 657 MTPFKLVYGK--SCHLPVELEHKAYWAIRNLNLDPNLAGDKRKLQLNELEELRMDAYENA 714
MTPF++VYG+ HLP L + +A R LQ E E++ + +
Sbjct: 1297 MTPFEIVYGQVPPVHLPY------------LPGESKVAVVARSLQ--EREDMLLFLKFHL 1342
Query: 715 RIYKERTKTWHDKKIIKRHFKSGDLVLL------FNSRLKLFPGKLRSRWSGPFQV 764
+ R K + D+ +R F+ GD V + S + KL ++ GP+++
Sbjct: 1343 MRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKI 1398
>At1g35370 hypothetical protein
Length = 1447
Score = 323 bits (827), Expect = 3e-88
Identities = 247/778 (31%), Positives = 380/778 (48%), Gaps = 62/778 (7%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
N T KD F +P I+ +++ L F +D +G+ Q+ + P+D +KT F G F Y
Sbjct: 640 NGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTHNGHFEY 699
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
M FGL NAPATFQ M S+F DF+ K + VF DD ++ S+ ++ +L V E
Sbjct: 700 LVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVMRL 759
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
L K H LGH + R IE D AKI+ +K+ PT+VK++R FLG AG+
Sbjct: 760 HKLFAKGSKEH--------LGHFISAREIETDPAKIQAVKEWPTPTTVKQVRGFLGFAGY 811
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YRRF+++F I PL +L D F + AF LK L AP++ P ++ F +
Sbjct: 812 YRRFVRNFGVIAGPLHALTKTDG-FCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMVE 870
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVG 300
DA + AVL Q K H + Y S+ L G Q++ + EKELLA ++A+ K+R YL+
Sbjct: 871 TDACGQGIRAVLMQ----KGHPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHYLLP 926
Query: 301 SKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETN 360
S I+ TD ++KYLL ++ P +W+ L EFD EI+ ++G EN+VAD LSR+ +
Sbjct: 927 SHFIIKTDQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQYRQGKENLVADALSRVEGSE 986
Query: 361 KDELPLDDSFPDDQLFLLAQTDAPWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYWD 420
+ L D L + + +D GVL ++ Q+ + KHY W
Sbjct: 987 VLHMALSIVECD----FLKEIQVAYESD-------GVLKDIISALQQHP--DAKKHYSWS 1033
Query: 421 EPYLFRRGSDGIFRRCIPENEV---SSILTHCHSSSYGGHASTQKTSFKILHSGFWWPSL 477
+ L R+ + + N+V + +L H S GG S + S + + S F+W +
Sbjct: 1034 QDILRRKS------KIVVPNDVEITNKLLQWLHCSGMGGR-SGRDASHQRVKSLFYWKGM 1086
Query: 478 FKDVHLFISKCDKCQRTGSITKRNEMPLNNI-LEVEIFDVWGIDFMGPFPSSFGNQYILV 536
KD+ FI C CQ+ S L + + +I+ +DF+ P+S G I+V
Sbjct: 1087 VKDIQAFIRSCGTCQQCKSDNAAYPGLLQPLPIPDKIWCDVSMDFIEGLPNSGGKSVIMV 1146
Query: 537 AVDYVSKWVE--AIASPTNDAQVVIKMFKKVIFPRFGVPRVVISDGGSHFISRHFEKLLQ 594
VD +SK A+A P + A V + F ++ G P ++SD F S +++ +
Sbjct: 1147 VVDRLSKAAHFVALAHPYS-ALTVAQAFLDNVYKHHGCPTSIVSDRDVLFTSDFWKEFFK 1205
Query: 595 KLGVRHKIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKTP 654
GV ++++ YHPQ+ GQ EV NR ++ L W+ L A + Y T Y +
Sbjct: 1206 LQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHARPHLWNKWLPLAEYWYNTNYHSS 1265
Query: 655 IGMTPFKLVYGKS--CHLPVELEHKAYWAIRNLNLDPNLAGDKRKLQLNELEELRMDAYE 712
MTPF+LVYG++ HLP L +A R LQ E E + +
Sbjct: 1266 SQMTPFELVYGQAPPIHLPY------------LPGKSKVAVVARSLQ--ERENMLLFLKF 1311
Query: 713 NARIYKERTKTWHDKKIIKRHFKSGDLVLL------FNSRLKLFPGKLRSRWSGPFQV 764
+ + R K + D+ +R F GD V + S + KL ++ GP+++
Sbjct: 1312 HLMRAQHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVLRVNQKLSPKYFGPYKI 1369
>At2g07410 putative retroelement pol polyprotein
Length = 411
Score = 302 bits (773), Expect = 6e-82
Identities = 157/276 (56%), Positives = 197/276 (70%), Gaps = 36/276 (13%)
Query: 522 MGPFPSSFGNQYILVAVDYVSKWVEAIASPTNDAQVVIKMFKKVIFPRFGVPRVVISDGG 581
MG FPSS+GN+YILVAVDYVSKWVEAI SPTNDA+VV+K+FK +IF RFGV VVISDG
Sbjct: 1 MGSFPSSYGNKYILVAVDYVSKWVEAIVSPTNDAKVVLKLFKTIIFTRFGVHMVVISDGR 60
Query: 582 SHFISRHFEKLLQKLGVRHKIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLD 641
HFI++ FE LL+K GV+HK+AT YHPQTSGQVE+SNR+IKAILEKTV +R D S KLD
Sbjct: 61 KHFINKAFENLLKKHGVKHKVATSYHPQTSGQVEISNREIKAILEKTVGVTRKDLSAKLD 120
Query: 642 DALWAYRTAYKT----PIGMTPFKLVYGKSCHLPVELEHKAYWAIRNLNLDPNLAGDKRK 697
DALWAY+TA+KT PIG TPF L+Y KS HLP+ELE KA WA++ +N D A ++R
Sbjct: 121 DALWAYKTAFKTAFKTPIGTTPFNLLYAKSGHLPIELEFKAMWAVKLMNFDIKTAEEERL 180
Query: 698 LQLNELEELRMDAYENARIYKERTKTWHDKKIIKRHFKSGDLVLLFNSRLKLFPGKLRSR 757
+QLN+L+E+R++AYE+++ YK + K L+SR
Sbjct: 181 IQLNDLDEIRLEAYESSKNYKGKRK-------------------------------LKSR 209
Query: 758 WSGPFQVRTVYPYGAIEIFSEETGSFTVNGQRLKIY 793
GPF V + PYGA+ + + ++G FTVNGQRLK Y
Sbjct: 210 LFGPFCVTEIRPYGAVTL-AVKSGDFTVNGQRLKKY 244
>At4g07610
Length = 276
Score = 278 bits (710), Expect = 1e-74
Identities = 144/278 (51%), Positives = 187/278 (66%), Gaps = 34/278 (12%)
Query: 332 LQEFDLEIKDKKGVENVVADHLSRLRETNKDELPLDDSFPDDQLFLLAQTDAPWYADFVN 391
++ FD+EI DKK +EN ADHLSR+R ++ +P+DDS ++QL + V
Sbjct: 5 IRGFDIEIVDKKDIENGAADHLSRMRI--EERIPIDDSMLEEQLMV------------VE 50
Query: 392 FLAAGVLPPELNYQQKKKFFNDLKHYYWDEPYLFRRGSDGIFRRCIPENEVSSILTHCHS 451
F +Y K+ F+ L P+ R + E+EV IL HCH
Sbjct: 51 FFGG-------SYSGKE--FHQLNVVEGRSPW-----------RYVSEDEVEGILLHCHC 90
Query: 452 SSYGGHASTQKTSFKILHSGFWWPSLFKDVHLFISKCDKCQRTGSITKRNEMPLNNILEV 511
S+YGG+ +T KT KIL +GFWWP++FK+ F+ KCD C R G+I+KRNEMP N ILEV
Sbjct: 91 STYGGNFTTFKTVSKILQAGFWWPTMFKEAQEFVLKCDSCHRKGNISKRNEMPQNPILEV 150
Query: 512 EIFDVWGIDFMGPFPSSFGNQYILVAVDYVSKWVEAIASPTNDAQVVIKMFKKVIFPRFG 571
E+FDVWGIDF+GPFPSS+GN+YILVAVDYVSKW+EA ASPTNDA+VV+K+FK +IF RFG
Sbjct: 151 ELFDVWGIDFIGPFPSSYGNKYILVAVDYVSKWIEATASPTNDAKVVLKLFKTIIFSRFG 210
Query: 572 VPRVVISDGGSHFISRHFEKLLQKLGVRHKIATPYHPQ 609
VPRVVISDGG HFI++ FE LL+K GV+H + + Q
Sbjct: 211 VPRVVISDGGKHFINKVFENLLKKHGVKHGVYVMFKTQ 248
>At4g07660 putative athila transposon protein
Length = 724
Score = 271 bits (693), Expect = 1e-72
Identities = 121/171 (70%), Positives = 148/171 (85%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
N A+RKDHFPLPF +QMLE LA H + C+LDGYSGFFQIPIHPNDQEKTTFTCP+GTFAY
Sbjct: 428 NAASRKDHFPLPFTNQMLEGLANHLYNCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAY 487
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
+RMPFGLCNAP TFQRCM SIFSD +EK++EVFMDDFSV+G +F CL NL +VL + E+
Sbjct: 488 KRMPFGLCNAPTTFQRCMTSIFSDLIEKMVEVFMDDFSVYGPSFSSCLLNLGRVLTKWEE 547
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEI 171
NLVLNWEKC+FMV+EGIVLGH + ++GIEVD+ KI+++ ++ PP +VK+I
Sbjct: 548 TNLVLNWEKCYFMVKEGIVLGHKISEKGIEVDKEKIKVMMQLQPPKTVKDI 598
Score = 146 bits (368), Expect = 5e-35
Identities = 73/121 (60%), Positives = 95/121 (78%), Gaps = 2/121 (1%)
Query: 258 KKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVGSKIIVYTDHSAIKYLLN 317
K + IYYAS+TLD AQ YATTEKELL VV+A KFR YLV SK+ VYTDH+A++++
Sbjct: 593 KTVKDIYYASRTLDEAQGRYATTEKELLVVVFAFKKFRSYLVESKVTVYTDHAALRHMYA 652
Query: 318 KKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETNKDELPLDDSFPDDQLFL 377
KKD KPRL+R ILLLQEFD+EI +KKG+EN ADHLSR+R ++ + +DDS P++QL +
Sbjct: 653 KKDTKPRLLRGILLLQEFDMEIVEKKGIENGAADHLSRMR--IEEPILIDDSMPEEQLMV 710
Query: 378 L 378
+
Sbjct: 711 V 711
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 268 bits (684), Expect = 1e-71
Identities = 143/357 (40%), Positives = 210/357 (58%), Gaps = 4/357 (1%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
N+ T K+ +PLP ID++L++L + F +D SG+ QIPI D KT F +G F +
Sbjct: 551 NRVTVKNRYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEF 610
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
MPFGL NAPA F R M S+F +F+++ + +F+DD V+ + ++ +L +V+E+ +
Sbjct: 611 VVMPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEQEVHLRRVMEKLRE 670
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
L KC F RE LGH+V G+ VD KIE I+ PT+ EIRSFLG AG+
Sbjct: 671 QKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGWAGY 730
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YRRF+K F+S+ +P+T L KD F + C + F LKE L + P++ P+ P+ +
Sbjct: 731 YRRFVKGFASMAQPMTKLTGKDVPFVWSQECEEGFVSLKEMLTSTPVLALPEHGQPYMVY 790
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVG 300
DAS +G VL Q I YAS+ L + NY T + E+ AV++A+ +R YL G
Sbjct: 791 TDASRVGLGCVLMQHG----KVIAYASRQLMKHEGNYPTHDLEMAAVIFALKIWRSYLYG 846
Query: 301 SKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLR 357
K+ V+TDH ++KY+ + + R RW+ L+ ++DLEI G NVV D LSR R
Sbjct: 847 GKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYHPGKANVVVDALSRKR 903
Score = 31.2 bits (69), Expect = 2.4
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 465 FKILHSGFWWPSLFKDVHLFISKCDKCQRTGSITKRNEMPLNNILEVEIFDVWGIDFMG- 523
++ L + W + DV ++++CD CQ + K L +L+ W DF+
Sbjct: 962 YRDLKRYYQWVGMKMDVANWVAECDVCQ----LVKAEHQVLGGMLQSLPIPEWKWDFITM 1017
Query: 524 ----PFPSSFGNQYILVAVDYVSKWVEAIA-SPTNDAQVVIKMFKKVIFPRFGVP 573
S I V VD ++K +A T+ A V+ K F I GVP
Sbjct: 1018 DLVVGLRVSRTKDAIWVIVDRLTKSAHFLAIRKTDGAAVLAKKFVSEIVKLHGVP 1072
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 259 bits (663), Expect = 3e-69
Identities = 140/357 (39%), Positives = 207/357 (57%), Gaps = 4/357 (1%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
N T K+ +PLP ID++L++L + F +D SG+ IPI D KT F +G F +
Sbjct: 526 NWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAEADVRKTAFRTRYGHFEF 585
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
MPFGL NAPA F R M S+F + +++ + +F+DD V+ + ++ +L +V+E+ +
Sbjct: 586 VVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSLEEHEVHLRRVMEKLRE 645
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
L KC F RE LGH+V G+ VD KIE I+ PT+ EIRSFLG AG+
Sbjct: 646 QKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWHTPTNATEIRSFLGLAGY 705
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YRRF+K F+S+ +P+T L KD F + C + F LKE L + P++ P+ P+ +
Sbjct: 706 YRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGEPYMVY 765
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVG 300
DAS +G VL QR I YAS+ L + NY T + E+ AV++A+ +R YL G
Sbjct: 766 TDASGVGLGCVLMQRG----KVIAYASRQLRKHEGNYPTHDLEMAAVIFALKIWRSYLYG 821
Query: 301 SKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLR 357
+ V+TDH ++KY+ + + R +W+ L+ ++DLEI G NVVAD LS R
Sbjct: 822 GNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYDLEIAYHPGKANVVADALSHKR 878
Score = 100 bits (248), Expect = 4e-21
Identities = 80/296 (27%), Positives = 138/296 (46%), Gaps = 25/296 (8%)
Query: 479 KDVHLFISKCDKCQRTGSITKRNEMPLNNILEVEI----FDVWGIDFMGPFPSSFGNQYI 534
+DV ++++CD CQ + +++P + + I +D IDF+ P S I
Sbjct: 941 EDVANWVAECDVCQL---VKAEHQVPGGMLQSLPIPEWKWDFITIDFVVGLPVSRTKDAI 997
Query: 535 LVAVDYVSKWVEAIA-SPTNDAQVVIKMFKKVIFPRFGVPRVVISDGGSHFISRHFEKLL 593
V VD ++K +A T+ A V+ K + I GVP ++SD S F S +
Sbjct: 998 WVIVDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQ 1057
Query: 594 QKLGVRHKIATPYHPQTSGQVEVSNRQIKAILEKTVSTSRTDWSNKLDDALWAYRTAYKT 653
++G + +++T YHPQT GQ E + + ++ +L V W++ L +AY +Y
Sbjct: 1058 AEMGTKVQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPA 1117
Query: 654 PIGMTPFKLVYGKSCHLPVELEHKAYWAIRNLNLDPNLAGDKRKLQLNELEELRMDAYEN 713
IGM PF+ +Y + C P+ L +I + R L+LN E
Sbjct: 1118 SIGMAPFEALYERPCRTPLCLTQVGERSIYGADYVQETTERIRVLKLNMKEA-------- 1169
Query: 714 ARIYKERTKTWHDKKIIKRHFKSGDLVLLFNSRLK-----LFPGKLRSRWSGPFQV 764
++R +++ DK+ + F+ GD V L + L+ + KL R+ GPF++
Sbjct: 1170 ----QDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFRI 1221
>At2g06890 putative retroelement integrase
Length = 1215
Score = 252 bits (643), Expect = 7e-67
Identities = 167/502 (33%), Positives = 261/502 (51%), Gaps = 30/502 (5%)
Query: 1 NKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFGTFAY 60
N T K P+P +D ML+ L S F +D SG+ QI ++ D+ KT F G + +
Sbjct: 479 NNVTVKYCHPIPRLDDMLDELHGSSIFSKIDLKSGYHQIRMNEGDEWKTAFKTKHGLYEW 538
Query: 61 RRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCLTNLEKVLERCEQ 120
MPFGL +AP+TF R M + F+ + V+ DD V+ + + + +L+ VL +
Sbjct: 539 LVMPFGLTHAPSTFMRLMNHVLRAFIGIFVIVYFDDILVYSESLREHIEHLDSVLNVLRK 598
Query: 121 VNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKIEIIKKMLPPTSVKEIRSFLGHAGF 180
L N +KC F + LG +V G++VD K++ I+ P +V E+RSF G AGF
Sbjct: 599 EELYANLKKCTFCTDNLVFLGFVVSADGVKVDEEKVKAIRDWPSPKTVGEVRSFHGLAGF 658
Query: 181 YRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWNLPFEIM 240
YRRF KDFS+I PLT ++ KD F ++ + +AF LK+ L AP++ ++ FEI
Sbjct: 659 YRRFFKDFSTIVAPLTEVMKKDVGFKWEKAQEEAFQSLKDKLTNAPVLILSEFLKTFEIE 718
Query: 241 CDASDYAVGAVLGQRNDKKMHAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVG 300
CDAS +GAVL Q D+K+ A + S+ L GA +NY T +KEL A+V A+ +++ YL
Sbjct: 719 CDASGIGIGAVLMQ--DQKLIAFF--SEKLGGATLNYPTYDKELYALVRALQRWQHYLWP 774
Query: 301 SKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKKGVENVVADHLSRLRETN 360
+++TDH ++K+L ++ R RW+ ++ F IK KKG +NVVAD LS+ R T
Sbjct: 775 KVFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFAYVIKYKKGKDNVVADALSQ-RYTL 833
Query: 361 KDELPLDDSFPDDQLFLLAQTDAPWYADFVNFLAAGVLPPELNYQQKKKFFNDLKHYYWD 420
L + +Q+ + +TD DF Y+ +KF + Y+
Sbjct: 834 LSTLNV-KLMGFEQIKEVYETD----HDFQEV-----------YKACEKFASG--RYFRQ 875
Query: 421 EPYLFRRGSDGIFRRCIPENEVSSI-LTHCHSSSYGGHASTQKTSFKILHSGFWWPSLFK 479
+ +LF R C+P + + + H GH KT +++ F WP +
Sbjct: 876 DKFLFYEN-----RLCVPNCSLRDLFVREAHGGGLMGHFGIAKT-LEVMTEHFRWPHMKC 929
Query: 480 DVHLFISKCDKCQRTGSITKRN 501
DV +C+ C++ S + N
Sbjct: 930 DVKRICGRCNTCKQAKSKIQPN 951
>At2g07420 putative retroelement pol polyprotein
Length = 1664
Score = 244 bits (622), Expect = 2e-64
Identities = 109/172 (63%), Positives = 141/172 (81%)
Query: 97 FSVHGSNFDDCLTNLEKVLERCEQVNLVLNWEKCHFMVREGIVLGHLVFDRGIEVDRAKI 156
F + +F CL NL +VL RC++ NLVLNWEKCHFMV+EGIVLGH + +GIEVD+ KI
Sbjct: 1483 FLGYSPSFSSCLLNLGRVLTRCKETNLVLNWEKCHFMVKEGIVLGHKISKKGIEVDKGKI 1542
Query: 157 EIIKKMLPPTSVKEIRSFLGHAGFYRRFIKDFSSITKPLTSLLLKDADFTFDDSCLQAFC 216
++I ++ PP +VK+IRSFLGHAGFYRRFIKDFS I +PLT LL K+ +F FD+ CL++F
Sbjct: 1543 KVIMQLQPPKTVKDIRSFLGHAGFYRRFIKDFSKIARPLTRLLCKETEFEFDEDCLKSFH 1602
Query: 217 RLKEALITAPIIQPPDWNLPFEIMCDASDYAVGAVLGQRNDKKMHAIYYASK 268
+KEAL++AP+++ P+W+ PFEIMCDASDYAVGA+LGQR KK+H IYYAS+
Sbjct: 1603 TIKEALVSAPVVRAPNWDYPFEIMCDASDYAVGAILGQRIGKKLHVIYYASR 1654
Score = 44.3 bits (103), Expect = 3e-04
Identities = 49/244 (20%), Positives = 105/244 (42%), Gaps = 17/244 (6%)
Query: 430 DGIFRRCIPENEVSSILTHCHSSSYGGHASTQKTSFKILHSGFWWPSLFKDVHLFIS-KC 488
DG++ + E+ S+ H SS G+A+++ ++ H L F + +C
Sbjct: 414 DGLY---VLEDTKPSVPLSSHFSSILGNANSESWHARLGHPHSRALKLLLPSTSFKNDEC 470
Query: 489 DKC---QRTGSITKRNEMPLNNILEVEIFDVWGIDFMGPFPSSFGNQYILVAVDYVSKWV 545
+ C + S+ ++ ++ DVW P S ++Y + +D SK+
Sbjct: 471 EACILGKHCKSVFPKSSTIYEKCFDLIHSDVW----TSPCLSRENHKYFVTFIDEKSKFT 526
Query: 546 EAIASPTNDAQV-VIKMFKKVIFPRFGVP-RVVISDGGSHFISRHFEKLLQKLGVRHKIA 603
P+ D + F+ + + +++ SD + S F++ L K G+ H+ +
Sbjct: 527 WFTLLPSKDRVLEAFTNFQTYVTNHYDAKIKILRSDNRGEYTSHAFKQHLNKHGIIHQTS 586
Query: 604 TPYHPQTSGQVEVSNR---QIKAILEKTVSTSRTDWSNKLDDALWAY-RTAYKTPIGMTP 659
PY PQ +G E NR +++ ++ + + W + + A + +T K + +P
Sbjct: 587 CPYTPQQNGVAERKNRHLMEVRRVMMFHTNVPKHFWIDGVVSACYLINQTPTKILLDSSP 646
Query: 660 FKLV 663
F+++
Sbjct: 647 FEVL 650
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.323 0.140 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,154,469
Number of Sequences: 26719
Number of extensions: 858579
Number of successful extensions: 2318
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2050
Number of HSP's gapped (non-prelim): 186
length of query: 811
length of database: 11,318,596
effective HSP length: 107
effective length of query: 704
effective length of database: 8,459,663
effective search space: 5955602752
effective search space used: 5955602752
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)
Medicago: description of AC146705.12