BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146683.3 + phase: 0 /pseudo
(122 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43670 protein transport protein SEC23 71 1e-13
At1g05520 unknown protein 49 6e-07
At4g14160 transport protein 44 1e-05
At3g23660 transport protein, putative 44 2e-05
At2g21630 putative protein transport protein SEC23 40 2e-04
At3g10280 putative fatty acid elongase 3-ketoacyl-CoA synthase 1 26 4.1
At2g46720 putative beta-ketoacyl-CoA synthase 26 4.1
At5g10630 putative protein 26 5.4
At2g01740 hypothetical protein 26 5.4
At5g59480 putative ripening-related protein - like 25 7.1
At5g09450 unknown protein 25 7.1
At3g44070 putative protein 25 7.1
At3g28760 hypothetical protein 25 7.1
At4g27350 unknown protein 25 9.2
>At5g43670 protein transport protein SEC23
Length = 794
Score = 70.9 bits (172), Expect = 1e-13
Identities = 43/86 (50%), Positives = 53/86 (61%), Gaps = 10/86 (11%)
Query: 32 ITVAIEDIHSTYNFKSRNR---STGVAFSAALGLLECCFVNTGSRIMVFAS-----GPGL 83
+T A E+I + K +R STG A S ALGLLE C V TGSRIMVF S GPG+
Sbjct: 277 LTSAFEEIIPLVDVKPGHRPHRSTGAAISTALGLLEGCSVTTGSRIMVFTSGPATRGPGI 336
Query: 84 VLDSDFWQSMRTHNDIYICNGHLAVY 109
++DSD S+RTH D I GH++ Y
Sbjct: 337 IVDSDLSNSIRTHRD--IITGHVSYY 360
>At1g05520 unknown protein
Length = 783
Score = 48.9 bits (115), Expect = 6e-07
Identities = 23/59 (38%), Positives = 35/59 (58%), Gaps = 5/59 (8%)
Query: 46 KSRNRSTGVAFSAALGLLECCFVNTGSRIMVF-----ASGPGLVLDSDFWQSMRTHNDI 99
+ ++R TGVA S A GLL CF TG+RI+ + GPG ++ D + +R+H D+
Sbjct: 278 RRQSRCTGVAISVATGLLGACFPGTGARIVALIGGPCSEGPGTIVSKDLSEPLRSHKDL 336
>At4g14160 transport protein
Length = 772
Score = 44.3 bits (103), Expect = 1e-05
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 50 RSTGVAFSAALGLLECCFVNTGSRIMVF-----ASGPGLVLDSDFWQSMRTHNDI 99
R TGVA S A GLL C TG+RI+ GPG ++ D +R+H D+
Sbjct: 272 RCTGVALSVAAGLLGACLPGTGARIVALVGGPCTEGPGTIISKDLSDPVRSHKDL 326
>At3g23660 transport protein, putative
Length = 765
Score = 43.9 bits (102), Expect = 2e-05
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 50 RSTGVAFSAALGLLECCFVNTGSRIMVF-----ASGPGLVLDSDFWQSMRTHNDI 99
R TGVA S A GLL C TG+RI+ GPG ++ D +R+H D+
Sbjct: 265 RCTGVALSVAAGLLGACLPGTGARIVALIGGPCTEGPGTIVSKDLSDPVRSHKDL 319
>At2g21630 putative protein transport protein SEC23
Length = 761
Score = 40.4 bits (93), Expect = 2e-04
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 50 RSTGVAFSAALGLLECCFVNTGSRIMVF-----ASGPGLVLDSDFWQSMRTHNDI 99
R TGVA A LL CF + +RIM F GPG ++ + +R+H DI
Sbjct: 264 RCTGVALRIAASLLGACFPGSAARIMAFIGGPSTQGPGAIVSRELSDPIRSHKDI 318
>At3g10280 putative fatty acid elongase 3-ketoacyl-CoA synthase 1
Length = 459
Score = 26.2 bits (56), Expect = 4.1
Identities = 11/30 (36%), Positives = 16/30 (52%)
Query: 66 CFVNTGSRIMVFASGPGLVLDSDFWQSMRT 95
C V G R+ A G G +S W+++RT
Sbjct: 406 CRVKRGDRVWQLAFGSGFKCNSIVWRALRT 435
>At2g46720 putative beta-ketoacyl-CoA synthase
Length = 466
Score = 26.2 bits (56), Expect = 4.1
Identities = 11/30 (36%), Positives = 16/30 (52%)
Query: 66 CFVNTGSRIMVFASGPGLVLDSDFWQSMRT 95
C V G R+ A G G +S W+++RT
Sbjct: 413 CRVKRGDRVWQLAFGSGFKCNSIVWRALRT 442
>At5g10630 putative protein
Length = 804
Score = 25.8 bits (55), Expect = 5.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 50 RSTGVAFSAALGLLECCFVNTGSRIMVFASG 80
RST +A G LE V GS++MV SG
Sbjct: 614 RSTSQGQVSACGKLEAGAVRPGSKVMVMPSG 644
>At2g01740 hypothetical protein
Length = 559
Score = 25.8 bits (55), Expect = 5.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 19 YTTWTNTACSKAGITVAIEDIHS 41
Y+TW +T C + +A++ HS
Sbjct: 166 YSTWIDTFCKSGELQLALKSFHS 188
>At5g59480 putative ripening-related protein - like
Length = 282
Score = 25.4 bits (54), Expect = 7.1
Identities = 8/23 (34%), Positives = 15/23 (64%)
Query: 19 YTTWTNTACSKAGITVAIEDIHS 41
+T W T+ + G+ +A+E IH+
Sbjct: 229 HTVWVGTSHREEGVDIALEHIHN 251
>At5g09450 unknown protein
Length = 409
Score = 25.4 bits (54), Expect = 7.1
Identities = 13/44 (29%), Positives = 23/44 (51%), Gaps = 1/44 (2%)
Query: 74 IMVFASGPG-LVLDSDFWQSMRTHNDIYICNGHLAVYTSKLLRG 116
+M+ +G G V+ W+S+R N I ++ V +S L+ G
Sbjct: 305 LMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLG 348
>At3g44070 putative protein
Length = 276
Score = 25.4 bits (54), Expect = 7.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 67 FVNTGSRIMVFASGPGLVLDSDFWQS 92
F+ RI+VFAS GL L +D+ S
Sbjct: 93 FITRHLRILVFASSNGLSLPNDYLSS 118
>At3g28760 hypothetical protein
Length = 357
Score = 25.4 bits (54), Expect = 7.1
Identities = 21/68 (30%), Positives = 33/68 (47%), Gaps = 6/68 (8%)
Query: 22 WTNTACSKAGITVAIEDIHSTYNFKSRNRSTGVAFSAALGLLECCFVNTGSRIMVFASGP 81
W T C + +TVA+E +T+ F S NR +S ++ L++ F+ I G
Sbjct: 17 WIWTMCKEV-MTVAVERGWNTFIFSSDNRKLSNEWS-SIALMDTLFIEEKKVI----DGT 70
Query: 82 GLVLDSDF 89
G V+ S F
Sbjct: 71 GNVVASVF 78
>At4g27350 unknown protein
Length = 278
Score = 25.0 bits (53), Expect = 9.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 16 TLHYTTWTNTACSKAGITVAIED----IHSTYNFK 46
T H+T W SK G+ V +++ I T +FK
Sbjct: 239 TAHFTLWDGFNSSKCGVAVFLQNSSLQIFGTQSFK 273
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.326 0.135 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,688,356
Number of Sequences: 26719
Number of extensions: 96933
Number of successful extensions: 295
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 14
length of query: 122
length of database: 11,318,596
effective HSP length: 87
effective length of query: 35
effective length of database: 8,994,043
effective search space: 314791505
effective search space used: 314791505
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)
Medicago: description of AC146683.3