BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146681.8 + phase: 0
(173 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g20220 unknown protein 131 2e-31
At1g78790 unknown protein 32 0.17
At3g22520 unknown protein 30 0.85
At2g26890 unknown protein 29 1.5
At2g15610 hypothetical protein 28 1.9
At5g49030 isoleucyl-tRNA synthetase 28 2.5
At2g01190 unknown protein 28 2.5
At1g72110 unknown protein (At1g72110) 28 2.5
At3g51400 unknown protein 28 3.2
At4g14840 unknown protein 27 4.2
At1g67120 hypothetical protein 27 4.2
At1g10190 unknown protein 27 5.5
At4g30970 hypothetical protein 27 7.2
At3g57760 unknown protein 27 7.2
At5g17320 homeobox protein 26 9.4
At2g17750 unknown protein 26 9.4
>At2g20220 unknown protein
Length = 190
Score = 131 bits (329), Expect = 2e-31
Identities = 68/154 (44%), Positives = 99/154 (64%), Gaps = 6/154 (3%)
Query: 9 SLITLCIDHLANQLLFGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMPFQDV 68
SL LCI L QLL ++ IP +YELPS LLD +++ L AL F +MPF +
Sbjct: 6 SLAFLCIQSLKIQLLESDNP----IPDLYELPSELLDGIVAHLPALALQKFQTNMPFHCL 61
Query: 69 NEEDFSRDDSTNNKRKRSRDWNLNTAWQKLFELRWPDLINQIQ-PSDWQKAYWEAHLQNC 127
+ + D RKR+R+ L ++W+ LF+LRWPD +++++ P+DWQ+ YWE HLQNC
Sbjct: 62 DSYESGDDCCLITGRKRARNDVLGSSWKLLFKLRWPDFVDRVESPADWQQLYWEKHLQNC 121
Query: 128 LDEAAEIALISPFKGRLADINISGTMLSCFLCNE 161
+DEAAE+AL F GR+ IN+S +L ++C+E
Sbjct: 122 VDEAAEVALRPTFSGRICSINVSDNILR-YICHE 154
>At1g78790 unknown protein
Length = 104
Score = 32.0 bits (71), Expect = 0.17
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 105 DLINQIQPSDWQKAYWEAHLQNCLDEA-AEIALISPFKGRLADINISGTMLSCFL 158
DLI+ I W + + E + +D AE+AL + K RLA N + LSC L
Sbjct: 10 DLIHAIFKHIWARRFRERERSDAIDATEAEVALGTTKKNRLASANANALKLSCEL 64
>At3g22520 unknown protein
Length = 600
Score = 29.6 bits (65), Expect = 0.85
Identities = 15/48 (31%), Positives = 25/48 (51%), Gaps = 1/48 (2%)
Query: 96 QKLFELRWPDLINQIQPSDWQKAYWEAHLQNCLDEAAEI-ALISPFKG 142
QK+ P ++ ++Q ++ +K WE N L AEI + +P KG
Sbjct: 550 QKMVANSIPKVVQEVQSANLKKPEWECKKDNALKREAEILSKFTPLKG 597
>At2g26890 unknown protein
Length = 2535
Score = 28.9 bits (63), Expect = 1.5
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
Query: 12 TLCIDHLANQLLFGEDEVIAIIPVIYELPSHLLDDLISR 50
T C+ H+A LL GE PVI E + LL D+++R
Sbjct: 1252 TRCLPHIAQALLSGE-------PVIVEAGAALLKDVVTR 1283
Score = 26.6 bits (57), Expect = 7.2
Identities = 15/40 (37%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Query: 46 DLISRLTPHALYHFHLHMPFQDVNEEDFSRDDSTNNKRKR 85
DL+SR+ P L + LH DV ++ STN ++KR
Sbjct: 705 DLLSRVLPPGLVAY-LHTRPDDVVDDTDQEGSSTNRRQKR 743
>At2g15610 hypothetical protein
Length = 185
Score = 28.5 bits (62), Expect = 1.9
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 46 DLISRLTPHALYHFHLHMPFQDVNEEDFSRDDSTNNKRKRSRDWNL-NTAWQKLFELRWP 104
DL S + H Y HL + +E D + +T + S +W+ N ++LF+L +
Sbjct: 85 DLYSAI--HRQYSNHLSRTWSSTSERDVNSSTTTIVNKVMSEEWHFCNIIVKRLFQLMFL 142
Query: 105 DL-INQIQPSDWQKAYWEAHLQNCLDEAAEIALISPFKGRLADINISG 151
L ++Q++ + Y L + +D+ + R A I ++G
Sbjct: 143 YLTVSQVRRRHGEAPYSAVRLIDGIDK--------QIRNRFATIRVTG 182
>At5g49030 isoleucyl-tRNA synthetase
Length = 1093
Score = 28.1 bits (61), Expect = 2.5
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 19/117 (16%)
Query: 29 VIAIIPVIYELPSHLLDDLISRL-------TP-----HALYHFHLHMPFQDVNEEDFSRD 76
+ AI ++ + LLD+ I + TP +A + + + V + FS D
Sbjct: 309 IYAIFKLVGGAKTSLLDEFIPNIYLAVWTTTPWTMPANAAVAVNAKLQYSVVEVQSFSED 368
Query: 77 DSTNNKRKRSRDWNLNTAWQKLFELRWPDLINQIQPSDW------QKAYWEAHLQNC 127
+ST K+ + QKLF + DL+ ++ + W K + + L+NC
Sbjct: 369 ESTVTSNKKKIPGKVLKNQQKLFVIVATDLVPALE-AKWGVKLSISKTFLGSDLENC 424
>At2g01190 unknown protein
Length = 720
Score = 28.1 bits (61), Expect = 2.5
Identities = 29/80 (36%), Positives = 36/80 (44%), Gaps = 16/80 (20%)
Query: 8 SSLITLCIDHLANQLLFGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMPFQD 67
SSL +L I L+N LL G + Y+LPS LD LIS T L D
Sbjct: 110 SSLPSL-IARLSNTLLDGRSFTLK-----YQLPSEDLDSLISVTTDEDL----------D 153
Query: 68 VNEEDFSRDDSTNNKRKRSR 87
E++ R S +N K SR
Sbjct: 154 NMIEEYDRTISASNSTKPSR 173
>At1g72110 unknown protein (At1g72110)
Length = 479
Score = 28.1 bits (61), Expect = 2.5
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 110 IQPSDWQKAYWEAHLQNCLDEAAEIALISPFKGRLAD-INISGTMLSC 156
+ P D K WE HL AE ++ F L D +++ +L+C
Sbjct: 112 LSPMDMSKPLWEFHLLKLKTSHAEAVTVARFHHSLGDGMSLMSLLLAC 159
>At3g51400 unknown protein
Length = 277
Score = 27.7 bits (60), Expect = 3.2
Identities = 15/48 (31%), Positives = 26/48 (53%), Gaps = 1/48 (2%)
Query: 15 IDHLANQLLFGEDEVIAIIPVIYELPSHLLDDL-ISRLTPHALYHFHL 61
I L N+L ++ ++++ +Y+ SHL +D S L PH + HL
Sbjct: 24 IQQLLNKLRADDNNSLSLLSNLYDSVSHLFNDSPSSLLVPHHSFFTHL 71
>At4g14840 unknown protein
Length = 555
Score = 27.3 bits (59), Expect = 4.2
Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
Query: 96 QKLFELRWPDLINQIQPSDWQKAYWEAHLQNCLDEAAEIA-LISPFKG 142
QK+ P ++ ++Q ++ +K WE N L +EI +P KG
Sbjct: 505 QKMVANSIPKVVQEVQAANLKKPEWEMKKDNALKRESEILNKFAPLKG 552
>At1g67120 hypothetical protein
Length = 5138
Score = 27.3 bits (59), Expect = 4.2
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 16/104 (15%)
Query: 8 SSLITLCIDHLANQLLFGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFHLHMPFQD 67
+SL+ DH Q L G +++ IP L L H L +P D
Sbjct: 3466 NSLLQEREDHPGLQKLSGVLQMLLAIPSSTPLAKALSGLQFLLCKVHKLQEEGCKLPISD 3525
Query: 68 VNEEDFSRDDSTNNKRKRSRDWNLNTAWQKLFELRWPDLINQIQ 111
+ E S L ++WQK+ RWP L++++Q
Sbjct: 3526 LLEPIIS----------------LASSWQKVEFERWPTLLDEVQ 3553
>At1g10190 unknown protein
Length = 396
Score = 26.9 bits (58), Expect = 5.5
Identities = 12/31 (38%), Positives = 15/31 (47%)
Query: 63 MPFQDVNEEDFSRDDSTNNKRKRSRDWNLNT 93
+P Q V +ED R DS + K WN T
Sbjct: 118 VPIQRVTKEDLLRFDSFGDNHKPRGSWNFTT 148
>At4g30970 hypothetical protein
Length = 134
Score = 26.6 bits (57), Expect = 7.2
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 2/19 (10%)
Query: 40 PSHLLDDLISRLTPHALYH 58
P H++ L++RLTP ALYH
Sbjct: 117 PKHMI--LLTRLTPQALYH 133
>At3g57760 unknown protein
Length = 378
Score = 26.6 bits (57), Expect = 7.2
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 10 LITLCIDHLANQLLFGEDEVIAIIPVIYELPSHLLDDLISRLTPHALYHFH 60
L+ C++ L+F EVI + P++ P +L I+R +AL + H
Sbjct: 113 LLGCCLEFTPPVLVFEYAEVITLGPLLTSHPGYLRRIKIAREVANALTYLH 163
>At5g17320 homeobox protein
Length = 718
Score = 26.2 bits (56), Expect = 9.4
Identities = 10/26 (38%), Positives = 18/26 (68%)
Query: 72 DFSRDDSTNNKRKRSRDWNLNTAWQK 97
DF+RDD+++++R+ D N N +K
Sbjct: 2 DFTRDDNSSDERENDVDANTNNRHEK 27
>At2g17750 unknown protein
Length = 396
Score = 26.2 bits (56), Expect = 9.4
Identities = 18/67 (26%), Positives = 31/67 (45%), Gaps = 10/67 (14%)
Query: 83 RKRSRDWNLNTAWQKLFELRWPDLINQIQPSDWQKAYWEAHLQNCLDEAAEIALISPFKG 142
R+ R L T + + ++ + P++IN + +A N + E A+I F G
Sbjct: 116 RRTRRKEILRTEYMQRYDKKNPNIIN----------HPKASTSNSIHEYAQIQAKGKFHG 165
Query: 143 RLADINI 149
ADIN+
Sbjct: 166 AHADINV 172
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.323 0.139 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,334,935
Number of Sequences: 26719
Number of extensions: 184042
Number of successful extensions: 528
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 18
length of query: 173
length of database: 11,318,596
effective HSP length: 92
effective length of query: 81
effective length of database: 8,860,448
effective search space: 717696288
effective search space used: 717696288
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Medicago: description of AC146681.8