BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146664.7 - phase: 0 
         (2305 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g20390 hypothetical protein                                        761  0.0
At3g31530 hypothetical protein                                        474  e-133
At2g15410 putative retroelement pol polyprotein                       393  e-109
At2g13330 F14O4.9                                                     381  e-105
At2g14400 putative retroelement pol polyprotein                       313  7e-85
At2g14380 putative retroelement pol polyprotein                       286  1e-76
At2g10780 pseudogene                                                  285  3e-76
At1g37200 hypothetical protein                                        284  5e-76
At2g11940 putative retroelement gag/pol polyprotein                   274  4e-73
At4g10580 putative reverse-transcriptase -like protein                273  7e-73
At2g04670 putative retroelement pol polyprotein                       268  4e-71
At4g03800                                                             263  9e-70
At2g07660 putative retroelement pol polyprotein                       262  2e-69
At1g37060 Athila retroelment ORF 1, putative                          258  3e-68
At2g15100 putative retroelement pol polyprotein                       256  1e-67
At2g14650 putative retroelement pol polyprotein                       255  2e-67
At3g11970 hypothetical protein                                        252  2e-66
At1g36590 hypothetical protein                                        252  2e-66
At1g35370 hypothetical protein                                        240  8e-63
At2g14040 putative retroelement pol polyprotein                       228  4e-59

>At1g20390 hypothetical protein
          Length = 1791

 Score =  761 bits (1964), Expect = 0.0
 Identities = 434/1131 (38%), Positives = 644/1131 (56%), Gaps = 54/1131 (4%)

Query: 1194 QERKTIQPHQEEIEI-----INLGTEEDKKEIKIGASLDVSIKKRVIELIREYVDIFAWS 1248
            +E KT     EE E+     +N+   +  + + +GA +  SI+  +I L++     FAWS
Sbjct: 694  KEAKTPSRSYEESELCRTEMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAWS 753

Query: 1249 YKDMPGLDPDVVEHRLPLKPECPPVKQKLRRSHPDMALKIKEEVRKQIDAGFLVTSEYPQ 1308
             +DM G+DP +  H L + P   PVKQK R+  P+ A  + EEV K + AG ++  +YP+
Sbjct: 754  IEDMKGIDPAITAHELNVDPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPE 813

Query: 1309 WLANIVPVPKKDGKIRMCVDYRDLNKASPKDNFPLPHIDVLVDNTAKCKVFSFMDGFSGY 1368
            WLAN V V KK+GK R+CVDY DLNKA PKD++PLPHID LV+ T+   + SFMD FSGY
Sbjct: 814  WLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGY 873

Query: 1369 NQIRMAPEDREKTSFITPWGAFCYVVMPFGLINAGATYQRGMTKIFHDMIHKEIEVYVDD 1428
            NQI M  +D+EKTSF+T  G +CY VM FGL NAGATYQR + K+  D I + +EVY+DD
Sbjct: 874  NQILMHKDDQEKTSFVTDRGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDD 933

Query: 1429 MIVKSGTEEEHVEYLLKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKV 1488
            M+VKS   E+HVE+L K F  L  Y ++LNP KCTFGV SG+ LG++V+++GIE +P ++
Sbjct: 934  MLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQI 993

Query: 1489 RAIREMPVPKTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKDQGVKWNDDCQKAFD 1548
            RAI E+P P+  ++V+   GR+  ++RFIS  T  C P + LL++     W+ D ++AF+
Sbjct: 994  RAILELPSPRNAREVQRLTGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFE 1053

Query: 1549 QIKEYLLEPPILVPPVDGRPLIMYLTVLEDSMGCVLGQQDETGKKEHVIYYLSKKFTDCE 1608
            ++K+YL  PPILV P  G  L +Y+ V + ++  VL ++D    ++  I+Y SK   + E
Sbjct: 1054 KLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVREDR--GEQRPIFYTSKSLVEAE 1111

Query: 1609 SRYSVLEKTCCALAWAAKRLRHYMINHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSE 1668
            +RY V+EK   A+  +A++LR Y  +HT  +++   P++     P+ +GR+ +W + LSE
Sbjct: 1112 TRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTD-QPLRVALHSPSQSGRMTKWAVELSE 1170

Query: 1669 YDIEYRTQKAVKGSILAEHLAHQPIEDYQPIKFDFPDKEVMYLKAKDCDEPVFGEGPDPE 1728
            YDI++R + A+K  +LA+ L   P++                      +  V G   +  
Sbjct: 1171 YDIDFRPRPAMKSQVLADFLIELPLQ--------------------SAERAVSGNRGE-- 1208

Query: 1729 SEWGLIFDGAVNVYGSGIGAVLITPKGTHIPFTARLRFDCTNNIVEYEACIMGIEEAIDL 1788
             EW L  DG+ +  GSGIG  L++P    +  + RLRF  TNN+ EYE  I G+  A  +
Sbjct: 1209 -EWSLYVDGSSSARGSGIGIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGM 1267

Query: 1789 RIKKIVIYGDSALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMAD 1848
            +I  I  + DS L+  Q+ GE+E ++  +  Y    + +   F   +L  +PR +N  AD
Sbjct: 1268 QITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPAD 1327

Query: 1849 ALATLSSMINVNGHNTVPV--INVQFLDRPAYVFVAEAI--------DDDKPWYHDIQVF 1898
            ALA L+   + +    +PV  I+   +D    V +   I         D   W  +I+ +
Sbjct: 1328 ALAALALTSDSDLRRIIPVESIDKPSIDSTDAVEIVNTIRSSNAPDPADPTDWRVEIRDY 1387

Query: 1899 LQTQKYPPGASNKDKKTLRKL---SSRFFLNEDVLYKRNFDGVLLRCVDKHEAEKLMCEI 1955
            L     P      DK T R+L   ++++ L ++ L K +  G +L C+   E  ++M E 
Sbjct: 1388 LSDGTLP-----SDKWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKET 1442

Query: 1956 HEGSFGTHSCGHAMAKKILRAGYYWITMHADCYNHAKRCHKCQIYADKIHIPPSMLNVIS 2015
            HEG+ G HS G A+A K+ + G+YW TM +DC     +C +CQ +A  IH P  +L    
Sbjct: 1443 HEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGV 1502

Query: 2016 SPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVRFIKNNLI 2075
            +P+PF  W +D++G +   AS   RFILV  DYFTKWVEA SYA +    V  F+   +I
Sbjct: 1503 APYPFMRWAMDIVGPM--PASRQKRFILVMTDYFTKWVEAESYATIRANDVQNFVWKFII 1560

Query: 2076 SRYGVPNRIITDNGTNLNNNMMKELCDDFKIQHHNSSPYRPQMNGAVEAANKNIKKIIQK 2135
             R+G+P  IITDNG+   +   +  C  +KI+ + S+P  PQ NG  EA NK I   ++K
Sbjct: 1561 CRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKK 1620

Query: 2136 MVVTYKD-WHEMLPYALYGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRVLMEAEL 2194
             +   K  W + L   L+ YRT+ R++T  TPF+  YGMEA+ P EV   SLR  M  + 
Sbjct: 1621 RLDEKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKN 1680

Query: 2195 SEAEWCQSRYDQLNLIEEKRMAALCHGQLYQSRMKQAFDKGVHPREFKEGDLVL-KCIKS 2253
             E    +   D+L+ +EE R AALC  Q YQ    + +++ VH R F  GDLVL K  ++
Sbjct: 1681 PELN-DRMMLDRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFEN 1739

Query: 2254 FQPDPRGKWTPNYEGPYVVKRAFSGGALILTNMDGEELPRPVNSDAVKKYF 2304
                  GK   N+EG Y V +    G   L  M G  +PR  NS  +K+Y+
Sbjct: 1740 TAEINAGKLGANWEGSYQVSKIVRPGDYELLTMSGTAVPRTWNSMHLKRYY 1790



 Score = 78.6 bits (192), Expect = 4e-14
 Identities = 43/138 (31%), Positives = 73/138 (52%)

Query: 871  LTFSDEDLPAEGNKHNRALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSEAPLR 930
            ++F+D DL      HN  L++ ++     ++ VLIDTGS+++++ K  L  +  ++  ++
Sbjct: 553  ISFTDVDLEGLDTPHNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIK 612

Query: 931  LSKVTVRAFDGTRRSVYGEVDLPISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAGAVT 990
                 +  FDG      G + LPI VG     V F V+   A ++ +LG PWIH   A+ 
Sbjct: 613  PVSKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIP 672

Query: 991  STLHQKLKFVSRGKLITV 1008
            ST HQ +KF +   + T+
Sbjct: 673  STYHQCVKFPTHNGIFTL 690



 Score = 50.8 bits (120), Expect = 9e-06
 Identities = 35/113 (30%), Positives = 49/113 (42%), Gaps = 6/113 (5%)

Query: 230 EKYQGDTCPQNHLTMYI----RRMIAYKNNVPLLIHCFQDSLTGPAHTWFMGLK--GVTT 283
           E Y G   P+  LT +     R  +   N        F + LTGPAH WF  LK   + +
Sbjct: 175 ESYNGRNDPKEFLTSFNVAINRAELTIDNFDAGRCQIFIEHLTGPAHNWFSRLKPNSIDS 234

Query: 284 FEQLAEAFMQQYKYNTYLAPSRKELQSLTQKDKESFKEYAQRFIQKAAQIRPP 336
           F QL  +F++ Y        S  +L S++Q  KES + +  RF      I  P
Sbjct: 235 FHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLRSFVDRFKLVVTNITVP 287


>At3g31530 hypothetical protein
          Length = 831

 Score =  474 bits (1221), Expect = e-133
 Identities = 292/870 (33%), Positives = 458/870 (52%), Gaps = 138/870 (15%)

Query: 1360 SFMDGFSGYNQIRMAPEDREKTSFITPWGAFCYVVMPFGLINAGATYQRGMTKIFHDMIH 1419
            S+   ++ +  + M PED+EKT+F T  G FCY VMPFGL NAGATY+R + KIF   I 
Sbjct: 83   SYCHSWTLFVVMMMNPEDQEKTAFYTEQGIFCYRVMPFGLKNAGATYERFVNKIFALQIG 142

Query: 1420 KEIEVYVDDMIVKSGTEEEHVEYLLKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQK 1479
            K +EVY+DDM+VKS TE++H+ +L + F++L  Y ++LNP KC FGVRS           
Sbjct: 143  KTMEVYIDDMLVKSMTEKDHISHLRECFKQLNLYNVKLNPAKCRFGVRS----------- 191

Query: 1480 GIEVDPDKVRAIREMPVPKTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKDQGVKW 1539
            GIE +P ++ A+  M  P+ +++V+   GR+  ++RFIS  T  C   + +LR+++  +W
Sbjct: 192  GIEANPKQIEALLGMASPQNKREVQCLTGRVAALNRFISRSTEKCLAFYDVLRRNKKFEW 251

Query: 1540 NDDCQKAFDQIKEYLLEPPILVPPVDGRPLIMYLTVLEDSMGCVLGQQDETGKKEHVIYY 1599
               C++AF ++K+YL  PPIL  PV G P  +Y+ V + ++   L ++D   +K  +I+Y
Sbjct: 252  TTRCEEAFQELKKYLATPPILAKPVIGEPQYLYVAVSDTAVSGELVREDRGEQK--LIFY 309

Query: 1600 LSKKFTDCESRYSVLEKTCCALAWAAKRLRHYMINHTTWLISKMDPIKYIFEKPALTGRI 1659
            +S+ FT  ESRY  +EK   A+  +A++LR Y  +H+  ++  M P++ I   P+ +GR+
Sbjct: 310  VSQTFTSAESRYPQMEKLALAVVMSAQKLRPYFQSHSIIVMGSM-PLRVILHSPSQSGRL 368

Query: 1660 ARWQMLLSEYDIEYRTQKAVKGSILAEHLAHQPIEDYQPIKFDFPDKEVMYLKAKDCDEP 1719
            A+W + LSEYDIEY+ +   K  +LA+ +   P ++ +                   + P
Sbjct: 369  AKWTIELSEYDIEYQNKTCAKSQVLADFIVELPTKEAR-------------------ENP 409

Query: 1720 VFGEGPDPESEWGLIFDGAVNVYGSGIGAVLITPKGTHIPFTARLRFDCTNNIVEYEACI 1779
            +       ++ W L  DG+ +  GSG+G  L +P G           + TNN+ EYEA +
Sbjct: 410  L-------DTTWLLHVDGSSSKQGSGVGIRLTSPTG-----------EATNNVAEYEALV 451

Query: 1780 MGIEEAIDLRIKKIVIYGDSALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHV 1839
             G+  A  L+I K   + DS L+ NQ  GE+ T+   +  Y  + + L   F++ EL  +
Sbjct: 452  AGLNLAWGLKIGKTRAFCDSQLIANQFNGEYTTQDKKMEAYLIHVQNLAKNFDEFELTRI 511

Query: 1840 PRDENQMADALATLSSMINVNGHNTVPVINVQFLDRPAYVFVAE--------AIDDDKP- 1890
            PR EN  ADALA L+S  + +    +P   V+F+++P+     E        + D D P 
Sbjct: 512  PRGENTSADALAALASTSDTSLKRVIP---VEFIEKPSIELGKEEHVLPIQISADQDDPD 568

Query: 1891 -----WYHDIQVFLQTQKYPPGASNKDKKTLRKL---SSRFFLNEDVLYKRNFDGVLLRC 1942
                 W   I  ++   K P      DK   RKL   ++RF L +  LYK    G L+ C
Sbjct: 569  DCNSEWMEPIISYISEGKLP-----SDKWKARKLKAQAARFVLVDTKLYKWRLSGPLMTC 623

Query: 1943 VDKHEAEKLMCEIHEGSFGTHSCGHAMAKKILRAGYYWITMHADCYNHAKRCHKCQIYAD 2002
            V+     K+M EIH GS                                        +A 
Sbjct: 624  VEAEAICKIMKEIHSGS----------------------------------------HAP 643

Query: 2003 KIHIPPSMLNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVT 2062
             IH P  +L+ I+SP+PF  W +D+IG + P  S   + +LV  DYF+KW+EA SYA++ 
Sbjct: 644  TIHQPAELLSSIASPYPFMRWSMDIIGPMHP--SKQKKLVLVLTDYFSKWIEAESYASIK 701

Query: 2063 KQVVVRFIKNNLISRYGVPNRIITDNGTNLNNNMMKELCDDFKIQHHNSSPYRPQMNGAV 2122
               V  F+  +++ R+G+P  I+TDNG+   +   +  CD + I+   S+P  PQ NG  
Sbjct: 702  DAQVENFVLKHILCRHGIPYEIVTDNGSQFISTRFQGFCDKWGIRLSKSTPRYPQGNGQA 761

Query: 2123 EAANKNIKKIIQKMVVTYKDWHEMLPYALYGYRTSVRTSTGATPFSLVYGMEAVLPVEVE 2182
            EAAN+                   L   L+ +RT+ R +T  TPF+ +YG E V+P E+ 
Sbjct: 762  EAANE-------------------LEGVLWLHRTTPRRATRETPFASIYGTECVIPAEMI 802

Query: 2183 IPSLRVLMEAELSEAEWCQSRYDQLNLIEE 2212
            +PSLR  +  E ++ +  Q+  D+L+LI+E
Sbjct: 803  VPSLRRSLSPE-NDPDNTQTPLDELDLIDE 831



 Score = 34.3 bits (77), Expect = 0.87
 Identities = 16/52 (30%), Positives = 26/52 (49%)

Query: 948 GEVDLPISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAGAVTSTLHQKLKF 999
           G + LP+        V F + +    ++ ++G PW++   AV ST H  LKF
Sbjct: 4   GTIKLPVRAKGVTKIVDFSITDQPTVYNAIIGTPWLNQFRAVASTYHLCLKF 55


>At2g15410 putative retroelement pol polyprotein
          Length = 1787

 Score =  393 bits (1009), Expect = e-109
 Identities = 197/480 (41%), Positives = 298/480 (62%), Gaps = 23/480 (4%)

Query: 1201 PHQEEIEIINLGTEEDKKEIKIGASLDVSIKKRVIELIREYVDIFAWSYKDMPGLDPDVV 1260
            P +  +  +N+   +  + + I   L   ++  ++  +R+    FAWS +DMPG+D  V 
Sbjct: 711  PQKGTVVQVNIDESDPSRCVGIRIDLPSELQNELVNFLRQNAATFAWSVEDMPGIDSAVT 770

Query: 1261 EHRLPLKPECPPVKQKLRRSHPDMALKIKEEVRKQIDAGFLVTSEYPQWLANIVPVPKKD 1320
             H L + P   P+KQK R+  PD    + EEV+K +DAG +V   YP WL N V V KK+
Sbjct: 771  CHELNVDPTYKPLKQKRRKLGPDRTKDVNEEVKKLLDAGSIVEVRYPDWLRNPVVVKKKN 830

Query: 1321 GKIRMCVDYRDLNKASPKDNFPLPHIDVLVDNTAKCKVFSFMDGFSGYNQIRMAPEDREK 1380
            GK R+C+D+ DLNKA PKD+FPLPHID LV+ TA  ++ SFMD FSGYNQI M   DREK
Sbjct: 831  GKWRVCIDFTDLNKACPKDSFPLPHIDRLVEATAGNELLSFMDAFSGYNQILMHQNDREK 890

Query: 1381 TSFITPWGAFCYVVMPFGLINAGATYQRGMTKIFHDMIHKEIEVYVDDMIVKSGTEEEHV 1440
            T FIT  G +CY VMPFGL NAGATY R + ++F D +   +EVY+DDM+VKS   EEH+
Sbjct: 891  TVFITDQGTYCYKVMPFGLKNAGATYPRLVNQMFTDQLDHSMEVYIDDMLVKSLRAEEHI 950

Query: 1441 EYLLKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPVPKTE 1500
             +L + FQ L +Y ++LNP+KCTFGV SG+ LG++V+++GIE +P ++ AI ++P P+  
Sbjct: 951  THLRQCFQVLNRYNMKLNPSKCTFGVTSGEFLGYLVTRRGIEANPKQISAIIDLPSPRNT 1010

Query: 1501 KQVRGFLGRLNYISRFISHMTATCGPIFKLLRKDQGVKWNDDCQKAFDQIKEYLLEPPIL 1560
            ++V+  +GR+  ++RFIS  T  C P ++LLR ++  +W++ C+                
Sbjct: 1011 REVQRLIGRIAALNRFISRSTDKCLPFYQLLRANKRFEWDEKCE---------------- 1054

Query: 1561 VPPVDGRPLIMYLTVLEDSMGCVLGQQDETGKKEHVIYYLSKKFTDCESRYSVLEKTCCA 1620
                +G  L +Y+ V   ++  VL ++D    ++H I+Y+SK     E RY  LEK   A
Sbjct: 1055 ----EGETLYLYIAVSTSAVSGVLVREDR--GEQHPIFYVSKTLDGAELRYPTLEKLAFA 1108

Query: 1621 LAWAAKRLRHYMINHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRTQKAVK 1680
            +  +A++LR Y  ++T  +++   P++ I   P+ +GR+A+W + LSEYDI Y+ +   K
Sbjct: 1109 VVISARKLRPYFKSYTVEVLTN-QPLRTILHSPSQSGRLAKWAVELSEYDIAYKNRTCAK 1167



 Score =  283 bits (723), Expect = 1e-75
 Identities = 168/431 (38%), Positives = 239/431 (54%), Gaps = 23/431 (5%)

Query: 1886 DDDKP----WYHDIQVFLQTQKYPPGASNKDKKTLRKL---SSRFFLNEDVLYKRNFDGV 1938
            D D P    W  +I+ ++  +  P     KDK   R+L   S+++ L  + L + +  GV
Sbjct: 1367 DSDSPASTNWIEEIRSYIADRIVP-----KDKWAARRLRARSAQYTLPHEHLLRWSATGV 1421

Query: 1939 LLRCVDKHEAEKLMCEIHEGSFGTHSCGHAMAKKILRAGYYWITMHADCYNHAKRCHKCQ 1998
            LL C+D  EA+++M EIHEG+ G HS G A+A KI + G YW TM+ADC     RC KCQ
Sbjct: 1422 LLSCLDDEEAQQVMREIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQ 1481

Query: 1999 IYADKIHIPPSMLNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASY 2058
             +A  IHIP  +L     P+PF  W +D+I      AS   ++ILV  DYFTKW EA SY
Sbjct: 1482 GHAPFIHIPSEVLQTAMPPYPFMRWAMDIIRPF--PASRQKKYILVMTDYFTKWFEAESY 1539

Query: 2059 ANVTKQVVVRFIKNNLISRYGVPNRIITDNGTNLNNNMMKELCDDFKIQHHNSSPYRPQM 2118
            A +  + V  F+  N+I  +G+P  I+TDNGT   +   +  C  +KI+   S+P  PQ 
Sbjct: 1540 ARIQSKEVQNFVWKNIICHHGLPYEIVTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQC 1599

Query: 2119 NGAVEAANKNIKKIIQKMVVTYKD-WHEMLPYALYGYRTSVRTSTGATPFSLVYGMEAVL 2177
            NG  EA NK I   ++K +   K  W + L   L+ YRT+ R ST  TPFSL YGMEA+ 
Sbjct: 1600 NGQAEATNKTILDGLKKRLDEKKGAWADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALA 1659

Query: 2178 PVEVEIPSLR---VLMEAELSEAEWCQSRYDQLNLIEEKRMAALCHGQLYQSRMKQAFDK 2234
            P E  +P++R   ++ +  L++    Q   D L+ +EE+R  AL   Q YQ    + ++K
Sbjct: 1660 PCEAGLPTVRRSMLINDPTLND----QMLLDNLDTLEEQRDQALLRIQNYQQAAAKFYNK 1715

Query: 2235 GVHPREFKEGDLVL-KCIKSFQPDPRGKWTPNYEGPYVVKRAFSGGALILTNMDGEELPR 2293
             V  R F EGDLVL K  ++      GK   ++EGPY++ +    G   L  MDG  +PR
Sbjct: 1716 KVKNRLFAEGDLVLRKVFENTVEQDAGKLGAHWEGPYLISKVVKPGVYELLTMDGTPIPR 1775

Query: 2294 PVNSDAVKKYF 2304
              NS  +K+Y+
Sbjct: 1776 SWNSANLKRYY 1786



 Score = 71.2 bits (173), Expect = 6e-12
 Identities = 40/103 (38%), Positives = 55/103 (52%)

Query: 1765 RFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYGDSALVINQIKGEWETRHPGLIPYRDYA 1824
            RF  +NN  EYEA I G+  A  + +KKI  Y DS LV +Q  G +E ++  +  Y    
Sbjct: 1189 RFPASNNEAEYEALIAGLRLAHGIEVKKIQAYCDSQLVASQFSGNYEAKNERMDAYLKVV 1248

Query: 1825 RRLLTFFNKVELHHVPRDENQMADALATLSSMINVNGHNTVPV 1867
            R L   F   EL  +PR +N  ADALA L+S  + +    +PV
Sbjct: 1249 RELSYNFEVFELTKIPRSDNAPADALAVLASTSDPDLRRVIPV 1291


>At2g13330 F14O4.9
          Length = 889

 Score =  381 bits (979), Expect = e-105
 Identities = 223/611 (36%), Positives = 329/611 (53%), Gaps = 62/611 (10%)

Query: 1318 KKDGKIRMCVDYRDLNKASPKDNFPLPHIDVLVDNTAKCKVFSFMDGFSGYNQIRMAPED 1377
            +K+GK R+C+D+RDLNKA PKD+FPLPHID LV+ T + +  SFMD F GYNQI M  + 
Sbjct: 289  EKNGKWRVCIDFRDLNKACPKDSFPLPHIDRLVEATVEHEKLSFMDAFYGYNQILMRRDG 348

Query: 1378 REKTSFITPWGAFCYVVMPFGLINAGATYQRGMTKIFHDMIHKEIEVYVDDMIVKSGTEE 1437
            +EKT+FIT  G + Y VMPFGL NAG TYQR + ++F D + K IEVY+DDM+VKS  E+
Sbjct: 349  QEKTAFITDRGTYYYKVMPFGLKNAGTTYQRLVNRMFVDQLGKTIEVYIDDMLVKSAHEK 408

Query: 1438 EHVEYLLKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPVP 1497
            +HV  L + F+ L K++++LNP KC+F V+S + L ++V+++GIE +P ++ A  EMP P
Sbjct: 409  DHVPQLRECFKILIKFEMKLNPEKCSFEVQSREFLEYLVTERGIEANPKQIAAFIEMPSP 468

Query: 1498 KTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKDQGVKWNDDCQKAFDQIKEYLLEP 1557
            K  ++V+   GR+  ++ FIS     C P ++ LRK +   WN DC++AF Q+K YL EP
Sbjct: 469  KMAREVQRLTGRIPALNGFISRSANKCVPFYQPLRKGKEFDWNKDCEQAFKQLKAYLTEP 528

Query: 1558 PILVPPVDGRPLIMYLTVLEDSMGCVLGQQDETGKKEHVIYYLSKKFTDCESRYSVLEKT 1617
            PIL  P  G PL +Y                                T+ + R   +EK 
Sbjct: 529  PILAKPEKGEPLYLY--------------------------------TNRDKRCPAMEKL 556

Query: 1618 CCALAWAAKRLRHYMINHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRTQK 1677
               +  + ++LR Y  +H   ++    PI+ I      +GR+A+W + L EYDIEYRT+ 
Sbjct: 557  ALTVVMSVRKLRLYFQSHPI-VVMTSQPIRTILHSLTQSGRLAKWAIELREYDIEYRTRT 615

Query: 1678 AVKGSILAEHLAHQPIEDYQPIKFDFPDKEVMYLKAKDCDEPVFGEGPDPESEWGLIFDG 1737
            ++K  +LA+ +   P+ D                           +G +   +W L  DG
Sbjct: 616  SLKAQVLADFVIKLPLADL--------------------------DGTNSNKKWLLHVDG 649

Query: 1738 AVNVYGSGIGAVLITPKGTHIPFTARLRFDCTNNIVEYEACIMGIEEAIDLRIKKIVIYG 1797
            + N  GSG+G  L +P G  I  + +L F+ +NN  EYEA I GI+ A +  I++I  Y 
Sbjct: 650  SSNRQGSGVGIQLTSPTGEVIEQSLQLGFNASNNESEYEALIAGIKLAQEKGIREIHAYS 709

Query: 1798 DSALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMI 1857
            DS LV +Q  GE+E +   +  Y +  + L   F   +L  +PR EN  AD LA L+S  
Sbjct: 710  DSQLVTSQFHGEYEAKDERMEAYLELVKTLAQQFESFKLTRIPRGENTSADTLAALASTS 769

Query: 1858 NVNGHNTVPVINVQFLDRPAYVFVAEAIDDDKPWYHDIQVFLQTQKYPPGASNKDKKTLR 1917
            +      +PV  ++       V  A    +  P   ++   L+ Q     + N   K  R
Sbjct: 770  DPFVKRIIPVEGIEHTSIDLTVKHAGMEPEAPPPQLELSRQLRRQVQRKRSQN---KRFR 826

Query: 1918 KLSSRFFLNED 1928
            KLS     NE+
Sbjct: 827  KLSMMIVRNEE 837



 Score = 70.1 bits (170), Expect = 1e-11
 Identities = 41/142 (28%), Positives = 71/142 (49%)

Query: 869  NSLTFSDEDLPAEGNKHNRALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSEAP 928
            + +TF + ++      H+ AL+I +      LS +++DTGS+++V+      +  + ++ 
Sbjct: 45   DGITFWESEITDLDKPHDDALVIRIDVGNYELSCIMVDTGSSVDVLFYDAFKRTGHLDSK 104

Query: 929  LRLSKVTVRAFDGTRRSVYGEVDLPISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAGA 988
            L+  K  +  F G      G + LP           F V++ +A F+ +LGRPW+H   A
Sbjct: 105  LQGRKTPLTGFAGDTTFSIGTIQLPTIARGVRQLTNFLVVDKKAPFNAILGRPWLHVMKA 164

Query: 989  VTSTLHQKLKFVSRGKLITVSG 1010
            V ST HQ +KF S   +  V G
Sbjct: 165  VPSTYHQCIKFPSYKGIAVVYG 186



 Score = 33.1 bits (74), Expect = 1.9
 Identities = 13/41 (31%), Positives = 27/41 (65%)

Query: 1215 EDKKEIKIGASLDVSIKKRVIELIREYVDIFAWSYKDMPGL 1255
            + K+ + IG  LD+++++ +I  ++E  D FAWS  ++ G+
Sbjct: 246  DPKRCVGIGHDLDLTVREDLITFLKENKDSFAWSSANLQGI 286


>At2g14400 putative retroelement pol polyprotein
          Length = 1466

 Score =  313 bits (802), Expect = 7e-85
 Identities = 158/355 (44%), Positives = 237/355 (66%), Gaps = 2/355 (0%)

Query: 1278 RRSHPDMALKIKEEVRKQIDAGFLVTSEYPQWLANIVPVPKKDGKIRMCVDYRDLNKASP 1337
            R+   + A  + +EV K +  G +   +YP WLAN V V KK+GK R+C+D+ DLNKA P
Sbjct: 470  RKLGVERAKAVNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKACP 529

Query: 1338 KDNFPLPHIDVLVDNTAKCKVFSFMDGFSGYNQIRMAPEDREKTSFITPWGAFCYVVMPF 1397
            KD+FPLPHID LV++TA  ++ SFMD FSGYNQI M PED+EKT FIT  G +CY VMPF
Sbjct: 530  KDSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRGIYCYKVMPF 589

Query: 1398 GLINAGATYQRGMTKIFHDMIHKEIEVYVDDMIVKSGTEEEHVEYLLKMFQRLRKYKLRL 1457
            GL NAGATY R + K+F + + K +EVY+DDM++KS  +E+HV++L + F  L +Y+++L
Sbjct: 590  GLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMKL 649

Query: 1458 NPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPVPKTEKQVRGFLGRLNYISRFI 1517
            NP KCTFGV SG+ LG+IV+++GIE +P+++ A   MP PK  K+V+   GR+  ++RFI
Sbjct: 650  NPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGRIAALNRFI 709

Query: 1518 SHMTATCGPIFKLLRKDQGVKWNDDCQKAFDQIKEYLLEPPILVPPVDGRPLIMYLTVLE 1577
            S  T    P +++L+ ++   W++ C++AF Q+K YL  PP+L  P     L +Y++V  
Sbjct: 710  SRSTDKSLPFYQILKGNKEFLWDEKCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVSN 769

Query: 1578 DSMGCVLGQQDETGKKEHVIYYLSKKFT-DCESRYSVLEKTCCALAWAAKRLRHY 1631
             ++  VL ++D  G+++ + Y +  +F  D E++ S +E     +   AK  R +
Sbjct: 770  HAVSGVLIREDR-GEQKPIYYIIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKF 823



 Score =  225 bits (573), Expect = 3e-58
 Identities = 167/537 (31%), Positives = 253/537 (47%), Gaps = 90/537 (16%)

Query: 1801 LVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVN 1860
            +++NQ  G++E +   +  Y    + L   F K EL  +PR +N  ADALA L+S  +  
Sbjct: 790  IIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIRIPRGQNTTADALAALASTSDPE 849

Query: 1861 GHNTVPV--INVQFLDRPAYVFVAEAIDDDKPWYHDIQVFLQTQKYPPGASNKDKK-TLR 1917
             ++ +PV  I+ + +      FV            D  V L     PP    K K+ T+ 
Sbjct: 850  VNSIIPVECISERSIKEEKEAFVVTRSRAAARDRGDTAVEL-----PPVKRRKSKEATVP 904

Query: 1918 K----------------------LSSRFFLNEDVL--------------YKRNFDGVLLR 1941
            K                        +  +++ED+L              Y+R      L 
Sbjct: 905  KPAVQENIGIELIEEVISDAKIEAETEPWVDEDILAPNEHPEPEALNSLYRRGVSDPYLL 964

Query: 1942 CVDKHEAEKLMCEIHEGSFGTHSCGHAMAKKILRAGYYWITMHADCYNHAKRCHKCQIYA 2001
             +     E +M E+HEG  G+HS G AMA KI +  YYW TM  DC  +A+RC +CQ++A
Sbjct: 965  SIFGPVVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDCVKYAQRCKRCQLHA 1024

Query: 2002 DKIHIPPSMLNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANV 2061
              IH P  + + IS+P+PF  W +D+IG +  +++ G +++LV  DYF+KW+EA +    
Sbjct: 1025 PLIHQPSELFSSISAPYPFMRWSMDIIGPLH-RSTRGVQYLLVLTDYFSKWIEAEA---- 1079

Query: 2062 TKQVVVRFIKNNLISRYGVPNRIITDNGTNLNNNMMKELCDDFKIQHHNSSPYRPQMNGA 2121
                        ++  +G+                        K+ +  S+   PQ NG 
Sbjct: 1080 ------------ILLNWGI------------------------KVSY--STLRYPQGNGQ 1101

Query: 2122 VEAANKNIKKIIQKMVVTYKD-WHEMLPYALYGYRTSVRTSTGATPFSLVYGMEAVLPVE 2180
             EAANK I   ++K +   K  W++ L   L+ YRT+ R STG TPFSLVYGM+AV+P E
Sbjct: 1102 AEAANKTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTGETPFSLVYGMKAVVPAE 1161

Query: 2181 VEIPSLRVLMEAELSEAEWCQSRYDQLNLIEEKRMAALCHGQLYQSRMKQAFDKGVHPRE 2240
            + +P LR   EA L+E E      D L+ I E+R  AL   Q YQ    + ++  V  R 
Sbjct: 1162 LNVPGLR-RTEAPLNEKENSAMLDDSLDTINERRDQALIQIQNYQHAAARYYNSKVKSRP 1220

Query: 2241 FKEGDLVLKCI-KSFQPDPRGKWTPNYEGPYVVKRAFSGGALILTNMDGEELPRPVN 2296
            F  GD VLK +  + + +  GK   N+EGPY+V      G   L +++   + RP N
Sbjct: 1221 FFVGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVRNGVYRLKDLEDRPVQRPWN 1277



 Score = 40.4 bits (93), Expect = 0.012
 Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 870 SLTFSDEDLPAEGNKHNRALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSEAPL 929
           S+ F +++       H+ AL++++      +S +LIDTGS+++++  STL+++  S A +
Sbjct: 408 SILFDEKETQHLERSHDDALVVTLDVANFEVSRILIDTGSSVDLIFLSTLERMGISRADV 467

Query: 930 RLSKVTVRAFDGTRRSVYGEVDLPISVG 957
              K+ V       ++V  EVD  + +G
Sbjct: 468 NRRKLGVE----RAKAVNDEVDKLLKIG 491


>At2g14380 putative retroelement pol polyprotein
          Length = 764

 Score =  286 bits (731), Expect = 1e-76
 Identities = 138/282 (48%), Positives = 196/282 (68%)

Query: 1251 DMPGLDPDVVEHRLPLKPECPPVKQKLRRSHPDMALKIKEEVRKQIDAGFLVTSEYPQWL 1310
            DM G+DP+V  H L + P    VKQK R+  P+ +  + +EV K +DAG +V  +YP+WL
Sbjct: 476  DMVGIDPEVACHELNVDPTFKLVKQKRRKLGPERSKAVNDEVDKLLDAGSIVEVKYPEWL 535

Query: 1311 ANIVPVPKKDGKIRMCVDYRDLNKASPKDNFPLPHIDVLVDNTAKCKVFSFMDGFSGYNQ 1370
            AN V V KK+ K R+C+D+ DLNKA PKD+FPLPHID +V+ T   ++ SFMD FSGYNQ
Sbjct: 536  ANPVVVKKKNDKWRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQ 595

Query: 1371 IRMAPEDREKTSFITPWGAFCYVVMPFGLINAGATYQRGMTKIFHDMIHKEIEVYVDDMI 1430
            I M  +D+EKTSFI   G +CY VMPFGL N GA YQR + ++F   + K +EVY+DDM+
Sbjct: 596  IPMHKDDQEKTSFIIDRGTYCYKVMPFGLKNVGARYQRLVNQMFAPQLGKTMEVYIDDML 655

Query: 1431 VKSGTEEEHVEYLLKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRA 1490
            VKS    +H+++L   F+ L KY ++LNP KC FGV SG+ LG+IV+++GIE +P ++RA
Sbjct: 656  VKSTRSADHIDHLKACFETLNKYNMKLNPAKCLFGVTSGEFLGYIVTKRGIEANPKQIRA 715

Query: 1491 IREMPVPKTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLR 1532
            I ++  P+ +K+V+   GR+  ++RFI+  T    P ++LLR
Sbjct: 716  ILDLQSPRNKKEVQRLTGRIAGLNRFIARSTDKSLPFYQLLR 757



 Score = 79.3 bits (194), Expect = 2e-14
 Identities = 45/140 (32%), Positives = 73/140 (52%)

Query: 871  LTFSDEDLPAEGNKHNRALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSEAPLR 930
            LTF+ EDL      HN  L+I +      ++ +LIDTGS++NV+ K  L ++   +  ++
Sbjct: 330  LTFTSEDLFGVDLPHNDPLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHDRHIK 389

Query: 931  LSKVTVRAFDGTRRSVYGEVDLPISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAGAVT 990
             S   +  FDG      G + LPI +G       F V++    ++ +LG PWIHD  A+ 
Sbjct: 390  PSVRPLTGFDGNTMMTNGTIKLPIYLGGAATWHKFVVVDKPTIYNIILGTPWIHDMQAIP 449

Query: 991  STLHQKLKFVSRGKLITVSG 1010
            S+ HQ +K  +   + T+ G
Sbjct: 450  SSYHQCIKIPTSIGIETIRG 469


>At2g10780 pseudogene
          Length = 1611

 Score =  285 bits (728), Expect = 3e-76
 Identities = 160/461 (34%), Positives = 257/461 (55%), Gaps = 18/461 (3%)

Query: 1221 KIGASLDVSIKKRVIELIREYVDIFAWSYKDMPGLDPDVVE-HRLPLKPECPPVKQKLRR 1279
            ++GAS ++    + I ++ E+ D+FA     + G+ PD  +   + L+P   P+ +   R
Sbjct: 615  EVGASAEL----KDIPIVNEFSDVFA----AVSGVPPDRSDPFTIELEPGTTPISKAPYR 666

Query: 1280 SHPDMALKIKEEVRKQIDAGFLVTSEYPQWLANIVPVPKKDGKIRMCVDYRDLNKASPKD 1339
              P    K+K+++ + +D GF+  S  P W A ++ V KKDG  R+C+DYR LNK + K+
Sbjct: 667  MAPAEMAKLKKQLEELLDKGFIRPSSSP-WGAPVLFVKKKDGSFRLCIDYRGLNKVTVKN 725

Query: 1340 NFPLPHIDVLVDNTAKCKVFSFMDGFSGYNQIRMAPEDREKTSFITPWGAFCYVVMPFGL 1399
             +PLP ID L+D     + FS +D  SGY+QI + P D  KT+F T +  F +VVMPFGL
Sbjct: 726  KYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYDHFEFVVMPFGL 785

Query: 1400 INAGATYQRGMTKIFHDMIHKEIEVYVDDMIVKSGTEEEHVEYLLKMFQRLRKYKLRLNP 1459
             NA A + + M  +F D + + + ++++D++V S + E H E+L  + +RLR+++L    
Sbjct: 786  TNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLREHELFAKL 845

Query: 1460 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPVPKTEKQVRGFLGRLNYISRFISH 1519
            +KC+F  RS   LG ++S +G+ VDP+K+R+I+E P P+   ++R FLG   Y  RF+  
Sbjct: 846  SKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMS 905

Query: 1520 MTATCGPIFKLLRKDQGVKWNDDCQKAFDQIKEYLLEPPILVPPVDGRPLIMYLTVLEDS 1579
              +   P+ +L  KD    W+D+C+K+F ++K  L   P+LV P +G P  +Y       
Sbjct: 906  FASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVG 965

Query: 1580 MGCVLGQQDETGKKEHVIYYLSKKFTDCESRYSVLEKTCCALAWAAKRLRHYMINHTTWL 1639
            +GCVL Q      K  VI Y S++    E  Y   +    A+ +  K  R Y+      +
Sbjct: 966  LGCVLMQ------KGSVIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLYGAKVQI 1019

Query: 1640 ISKMDPIKYIFEKPALTGRIARWQMLLSEY--DIEYRTQKA 1678
             +    +KYIF +P L  R  RW  L+++Y  DI Y   KA
Sbjct: 1020 YTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGKA 1060



 Score = 86.7 bits (213), Expect = 1e-16
 Identities = 69/336 (20%), Positives = 139/336 (40%), Gaps = 20/336 (5%)

Query: 1944 DKHEAEKLMCEIHEGSFGTHSCGHAMAKKILRAGYYWITMHADCYNHAKRCHKCQIYADK 2003
            D+   E+++ E H+  F  H   + M + + R  Y+W+ M  D      +C  CQ+   +
Sbjct: 1156 DRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMKKDVARWVAKCPTCQLVKAE 1214

Query: 2004 IHIPPSMLNVISSP-WPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVT 2062
              +P  +L  +  P W +    +D +  +     + H  + V +D  TK     + ++  
Sbjct: 1215 HQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKD 1274

Query: 2063 -KQVVVRFIKNNLISRYGVPNRIITDNGTNLNNNMMKELCDDFKIQHHNSSPYRPQMNGA 2121
              +++     + ++  +G+P  I++D  T   +   K        + + S+ Y PQ +  
Sbjct: 1275 GAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDEQ 1334

Query: 2122 VEAANKNIKKIIQKMVVTY-KDWHEMLPYALYGYRTSVRTSTGATPFSLVYGMEAVLPVE 2180
             E   + ++ +++  V+ +  +W + L    + Y  S + S G +P+  +YG     P+ 
Sbjct: 1335 SERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPLC 1394

Query: 2181 VEIPSLRVLMEAELSEAEWCQSRYDQLNLIEEKRMAALCHGQLYQSRMKQAFDKGVHPRE 2240
                  R L    + +    + ++ ++ L E             Q R K   +K     E
Sbjct: 1395 WTPVGERRLFGPTIVDETTERMKFLKIKLKEA------------QDRQKSYANKRRKELE 1442

Query: 2241 FKEGDLVLKCIKSFQP----DPRGKWTPNYEGPYVV 2272
            F+ GDLV     +++       R K +P Y GPY V
Sbjct: 1443 FQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKV 1478


>At1g37200 hypothetical protein
          Length = 1564

 Score =  284 bits (726), Expect = 5e-76
 Identities = 139/312 (44%), Positives = 206/312 (65%), Gaps = 4/312 (1%)

Query: 1187 EIKWMLEQERKTIQPHQEEIEIINLGTEEDKKEIKIGASLDVSIKKRVIELIREYVDIFA 1246
            E+K +   +     P +  I  + +   + K+ + +G  LD +I++  I  ++E  D FA
Sbjct: 600  EMKTVRSSDPSQCGPQKSSITQVYIDESDPKQCVGVGQDLDPAIREDFITFLKENKDSFA 659

Query: 1247 WSYKDMPGLDPDVVEHRLPLKPECPPVKQKLRRSHPDMALKIKEEVRKQIDAGFLVTSEY 1306
            WS  ++ G+  +V  H L + P   P+KQK R+  P+ A  +++EV + +  G +   +Y
Sbjct: 660  WSSANLQGISLEVTSHELNVDPTYRPIKQKRRKLGPERAKAVQDEVDRLLKIGSIREVKY 719

Query: 1307 PQWLANIVPVPKKDGKIRMCVDYRDLNKASPKDNFPLPHIDVLVDNTAKCKVFSFMDGFS 1366
            P WLAN V V  K+GK R+C+D+ DLNKA PKD+FPLPHID LV  TA  ++ SFMD FS
Sbjct: 720  PDWLANPVVVKNKNGKWRVCIDFMDLNKACPKDSFPLPHIDRLVKATAGHELLSFMDAFS 779

Query: 1367 GYNQIRMAPEDREKTSFITPWGAFCYVVMPFGLINAGATYQRGMTKIFHDMIHKEIEVYV 1426
            GYNQI M P+D+EKT+FIT     CY VMPFGL N GATYQR + ++F D + K +E+Y+
Sbjct: 780  GYNQILMRPDDQEKTAFITD----CYKVMPFGLKNTGATYQRLVNRMFADQLGKTMELYI 835

Query: 1427 DDMIVKSGTEEEHVEYLLKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPD 1486
            DDM+VKS  E++H+  L + F+ L K++++LNP KC+FGV SG+ LG++V+Q+GIE +P 
Sbjct: 836  DDMLVKSAHEKDHLPQLRECFKILNKFEMKLNPEKCSFGVPSGEFLGYLVTQRGIEANPK 895

Query: 1487 KVRAIREMPVPK 1498
            ++ A  +MP PK
Sbjct: 896  QIAAFIDMPSPK 907



 Score =  246 bits (627), Expect = 1e-64
 Identities = 170/555 (30%), Positives = 258/555 (45%), Gaps = 99/555 (17%)

Query: 1588 DETGKKEHVIYYLSKKFTDCESRYSVLEKTCCALAWAAKRLRHYMINHTTWLISKMDPIK 1647
            D  G+K   IYY+SK   D E+ Y  +EK   A+  +A++LR Y+ +H   ++    PI+
Sbjct: 927  DHEGQKP--IYYVSKTLIDAETHYRAMEKLALAVVMSARKLRQYLQSHPI-VVMTSQPIR 983

Query: 1648 YIFEKPALTGRIARWQMLLSEYDIEYRTQKAVKGSILAEHLAHQPIEDYQPIKFDFPDKE 1707
             I      + R+A+W + LSEYDIEYRT+ + K  +LA+ +   P+ D            
Sbjct: 984  TILHSTTQSSRLAKWAIELSEYDIEYRTRTSFKAQVLADFVIELPLADL----------- 1032

Query: 1708 VMYLKAKDCDEPVFGEGPDPESEWGLIFDGAVNVYGSGIGAVLITPKGTHIPFTARLRFD 1767
                           +G +   +W L  DG+ N  GSG G  L +P G  I  + RL F+
Sbjct: 1033 ---------------DGTNSNKKWLLHVDGSSNRQGSGEGIQLTSPTGEVIEQSFRLGFN 1077

Query: 1768 CTNNIVEYEACIMGIEEAIDLRIKKIVIYGDSALVINQIKGEWETRHPGLIPYRDYARRL 1827
             +NN  EYEA I GI+ A  +RI+ I  + DS LV +Q  GE+E +   +  Y +  + L
Sbjct: 1078 ASNNESEYEALIDGIKLAQGMRIRDIHAHSDSQLVTSQFHGEYEAKDERMEAYLELVKTL 1137

Query: 1828 LTFFNKVELHHVPRDENQMADALATLSSMINVNGHNTVPVINVQF--------------- 1872
               F   EL  +PR EN   DALA L+S ++      +PV  ++                
Sbjct: 1138 TQQFESFELTRIPRGENTSTDALAALASTLDPFVKRIIPVEGIEHPSIDLTVKHAGMETS 1197

Query: 1873 ---------------------------LDRPAYVFVAEAIDDDKP-----WYHDIQVFLQ 1900
                                        +  A +   E +   +P     W   I  +++
Sbjct: 1198 ATCNFTRVTRSTTAAARALAAAAEAGAAEEEAKLRTPEQLASYEPEPYNDWRIPIIDYIE 1257

Query: 1901 TQKYPPGASNKDKKTLRKL---SSRFFLNEDVLYKRNFDGVLLRCVDKHEAEKLMCEIHE 1957
                PP     DK   RKL   S+R+ + E  L KR+  G  + C    + + LM  +HE
Sbjct: 1258 RGITPP-----DKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYGQQTKDLMKSMHE 1312

Query: 1958 GSFGTHSCGHAMAKKILRAGYYWITMHADCYNHAKRCHKCQIYADKIHIPPSMLNVISSP 2017
            G  G+H  G  +             M ADC  H+ RC KCQ +A  +H PP  ++ ISSP
Sbjct: 1313 GQCGSHYSGRTLR----------CIMLADCIAHSLRCDKCQRHAPTLHQPPEEMSSISSP 1362

Query: 2018 WPFSMWGIDMIGRIEPKASNGH---RFILVAIDYFTKWVEAASYANVTKQVVVRFIKNNL 2074
            +PF  W +D++  +E  AS G    + +LV  DY TKW+E  ++  VT++ V  F+  N+
Sbjct: 1363 YPFMKWSMDVVRPME--ASGGKKRLKNLLVLTDYSTKWIEGKAFQQVTEKQVEVFLLENI 1420

Query: 2075 ISRYGVPNRIITDNG 2089
            + R+G+P  I+TDNG
Sbjct: 1421 VYRHGIPYEIVTDNG 1435



 Score = 42.0 bits (97), Expect = 0.004
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 2208 NLIEEKRMAALCHGQLYQSRMKQAFDKGVHPREFKEGDLVL-KCIKSFQPDPRGKWTPNY 2266
            + I+E+R  A+   Q YQ    + ++  +  R F+ G+LVL K   + +    GK   N+
Sbjct: 1465 DFIDERRDHAMIQVQNYQQPAVRYYNSNIKIRRFEVGELVLRKVFSNTRELNAGKLGTNW 1524

Query: 2267 EGPYVVKRAFSGGALILTNM-DGEELPRPVNSDAVKKY 2303
            EGPY +      G   L  + +G    RP N+  +KKY
Sbjct: 1525 EGPYRITEVVRDGIYKLVKVFNGVPELRPWNAMHLKKY 1562



 Score = 41.2 bits (95), Expect = 0.007
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 971  QASFSCLLGRPWIHDAGAVTSTLHQKLKFVSRGKLITVSG 1010
            +A F+ +LGRPW+H   AV ST HQ +KF S   +  + G
Sbjct: 529  KAPFNAILGRPWLHAMKAVPSTYHQCIKFPSEKGIAVIYG 568


>At2g11940 putative retroelement gag/pol polyprotein
          Length = 1212

 Score =  274 bits (701), Expect = 4e-73
 Identities = 168/534 (31%), Positives = 268/534 (49%), Gaps = 99/534 (18%)

Query: 1174 YEAVAEEDEEIPNEIKWMLEQERKTIQPHQEEIEI-------------INLGTEEDKKEI 1220
            YEA+  E    P   +   E+     +PH +   I             I  G+  D   +
Sbjct: 291  YEALESEKTSPPPRTRSKKEETSYLDKPHDDAFVITLDIANCKVQRVLIVTGSSVDLIFL 350

Query: 1221 KIGASLDVSIKKRVIELIREYVDIFAWSYKDMPGLDPDVVEHRLPLKPECPPVKQKLRRS 1280
               A+L  + ++ +I+ + +    FAW+ ++M G+  +V+ H L + P   PVKQK ++ 
Sbjct: 351  DTLANLGQNFRRELIQFLEKNKSTFAWTIREMTGISTEVISHELNVDPTFKPVKQKRQKH 410

Query: 1281 HPDMALKIKEEVRKQIDAGFLVTSEYPQWLANIVPVPKKDGKIRMCVDYRDLNKASPKDN 1340
             PD A  +  +V + + A                                        D 
Sbjct: 411  GPDRAEAVNVKVVRLLKA----------------------------------------DC 430

Query: 1341 FPLPHIDVLVDNTAKCKVFSFMDGFSGYNQIRMAPEDREKTSFITPWGAFCYVVMPFGLI 1400
            FPLPHID  +++T   ++ SFMD FSGYNQI M P+D+EKTSFIT  G + Y VMPFGL 
Sbjct: 431  FPLPHIDRPIESTTGQEMLSFMDAFSGYNQIMMNPDDQEKTSFITERGTYYYKVMPFGLK 490

Query: 1401 NAGATYQRGMTKIFHDMIHKEIEVYVDDMIVKSGTEEEHVEYLLKMFQRLRKYKLRLNPN 1460
            N GATYQ  +  +F D++ K +EVY+DDM+VK+     H+++  + F  L ++ ++LNP 
Sbjct: 491  NVGATYQLLVNIMFKDLLGKTMEVYIDDMLVKTAFSASHLDHFQQCFDILNEFGMKLNPL 550

Query: 1461 KCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPVPKTEKQVRGFLGRLNYISRFISHM 1520
            KCTF V S + LGFI                                          S  
Sbjct: 551  KCTFAVPSREFLGFI------------------------------------------SRS 568

Query: 1521 TATCGPIFKLLRK-DQGVKWNDDCQKAFDQIKEYLLEPPILVPPVDGRPLIMYLTVLEDS 1579
            T  C P   LLRK ++G  W++ C++AF Q+K YL EP +L  P  G  L +Y++V E++
Sbjct: 569  TDKCLPFCTLLRKVNKGFVWDERCEEAFRQLKSYLSEPLVLAKPEFGERLFLYISVSENA 628

Query: 1580 MGCVLGQQDETGKKEHVIYYLSKKFTDCESRYSVLEKTCCALAWAAKRLRHYMINHTTWL 1639
            +  VL + + +   E  I+Y+SK F+D E+RY ++EK   A+  AA++LR Y  +H   +
Sbjct: 629  ISGVLVRVERS--DERPIFYVSKSFSDVETRYPMMEKLALAVVTAARKLRPYFQSHPIVV 686

Query: 1640 ISKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRTQKAVKGSILAEHLAHQPI 1693
            ++ + P++ I   P  +GR+A+W + LSE+++E+  + ++K  +LA+ L   P+
Sbjct: 687  LTSL-PLRTILHSPNQSGRLAKWAIELSEFNLEFHARTSLKSQVLADFLIELPL 739



 Score =  161 bits (407), Expect = 5e-39
 Identities = 144/551 (26%), Positives = 235/551 (42%), Gaps = 123/551 (22%)

Query: 1800 ALVINQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINV 1859
            A   +   G++E +   +  Y D  R L   F K EL  VPR EN  ADALA L+S   +
Sbjct: 740  ATTASDYSGDYEAKDNRMEAYLDLLRELAEKFEKFELIKVPRAENSAADALAALASTPEI 799

Query: 1860 NGHNTVPVINVQFLDRP-----AYVFVAEAI----------------------------- 1885
                   +I+V+ + +P        FV  A+                             
Sbjct: 800  TVRR---IISVETIAQPNIRIEEINFVTRAMRRQLEVQANNPELQQLHDEDEIPEAVPLV 856

Query: 1886 -DDDKPWYHDIQVFLQTQKYP------PGASNKDKKTLRKLSS---RFFLNEDVLYKRNF 1935
             D+D   Y+    +    + P       G    DK   RKL +   RF L +D+LY+R  
Sbjct: 857  ADEDSTEYNLPHDWGADWREPIRNYIFNGVLPTDKWEARKLKATCARFCLADDILYRRII 916

Query: 1936 DGVLLRCVDKHEAEKLMCEIHEGSFGTHSCGHAMAKKILRAGYYWITMHADCYNHAKRCH 1995
                  C+   +   ++ EIH+G+ G HS G ++A K+ + GY+W TM ADC  +A R  
Sbjct: 917  SAPDAICIFGEQTRTVIKEIHDGTCGNHSGGRSLAFKLKKYGYFWPTMVADCEAYAHRSR 976

Query: 1996 KCQIYADKIHIPPSMLNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEA 2055
            +   +               SP PF  W +D++G +   ++ G RF+L+      +WVEA
Sbjct: 977  RTFHFG-------------ISPLPFMKWSMDIVGPLH-VSTRGVRFLLL------EWVEA 1016

Query: 2056 ASYANVTKQVVVRFIKNNLISRYGVPNRIITDNGTNLNNNMMKELCDDFKIQHHNSSPYR 2115
            A+Y+ +T+  V  FI   +I R+G+P  I+TDNG    +   K    +++I+ + S+P  
Sbjct: 1017 AAYSYITQVQVRHFIWKEIICRHGLPYEIVTDNGPQFISEQFKAFYAEWQIRLNRSTPRY 1076

Query: 2116 PQMNGAVEAANKNIKKIIQKMVVTYKDWHEMLPYALYGYRTSVRTSTGATPFSLVYGMEA 2175
            PQ  G VEA                                                   
Sbjct: 1077 PQ--GNVEA--------------------------------------------------- 1083

Query: 2176 VLPVEVEIPSLRVLMEAELSEAEWCQSRYDQLNLIEEKRMAALCHGQLYQSRMKQAFDKG 2235
            V+P E+++P  R +   + +EA   +   D ++ I+E+R  AL   Q Y +   Q ++  
Sbjct: 1084 VIPAEIKVPRTRRIRNPK-NEAANNKMMVDVIDTIDERRNRALVRMQNYHNAAAQYYNSN 1142

Query: 2236 VHPREFKEGDLVLKCI-KSFQPDPRGKWTPNYEGPYVVKRAFSGGALILTNMDGEELPRP 2294
            V  R F  G LVL+ I ++      GK   ++EGPY +      G  ++ NM+G+ + R 
Sbjct: 1143 VRSRSFDVGTLVLRRIHQNTAEKGAGKLGISWEGPYKITHIVRNGDCLI-NMEGKTVRRA 1201

Query: 2295 VNSDAVKKYFV 2305
             N+  +K++++
Sbjct: 1202 WNAAHLKRFYI 1212


>At4g10580 putative reverse-transcriptase -like protein
          Length = 1240

 Score =  273 bits (699), Expect = 7e-73
 Identities = 151/439 (34%), Positives = 242/439 (54%), Gaps = 12/439 (2%)

Query: 1235 IELIREYVDIFAWSYKDMPGLDPDVVE-HRLPLKPECPPVKQKLRRSHPDMALKIKEEVR 1293
            I +++E+ D+F    + + GL P   +   + L+P   P+ +   R  P    ++K++++
Sbjct: 457  IRVVQEFQDVF----QSLQGLPPSQSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLK 512

Query: 1294 KQIDAGFLVTSEYPQWLANIVPVPKKDGKIRMCVDYRDLNKASPKDNFPLPHIDVLVDNT 1353
              +  GF+  S  P W A ++ V KKDG  R+C+DYR+LN+ + K+ +PLP ID L+D  
Sbjct: 513  DLLGKGFIRPSTSP-WGAPVLFVKKKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQL 571

Query: 1354 AKCKVFSFMDGFSGYNQIRMAPEDREKTSFITPWGAFCYVVMPFGLINAGATYQRGMTKI 1413
                 FS +D  SGY+QI +A  D  KT+F T +G F +VVMPFGL NA A + R M  +
Sbjct: 572  RGATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSV 631

Query: 1414 FHDMIHKEIEVYVDDMIVKSGTEEEHVEYLLKMFQRLRKYKLRLNPNKCTFGVRSGKLLG 1473
            F + + + + +++DD++V S + EE   +L ++ ++LR+ KL    +KC+F  R    LG
Sbjct: 632  FQEFLDEFVIIFIDDILVYSKSPEEQEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLG 691

Query: 1474 FIVSQKGIEVDPDKVRAIREMPVPKTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRK 1533
             IVS +G+ VDP+K+ AIR+ P P    ++R FLG   Y  RF+    +   P+ KL  K
Sbjct: 692  HIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGWAGYYRRFVKGFASMAQPMTKLTGK 751

Query: 1534 DQGVKWNDDCQKAFDQIKEYLLEPPILVPPVDGRPLIMYLTVLEDSMGCVLGQQDETGKK 1593
            D    W+ +C++ F  +KE L   P+L  P  G+P ++Y       +GCVL Q  +    
Sbjct: 752  DVPFVWSQECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQHGK---- 807

Query: 1594 EHVIYYLSKKFTDCESRYSVLEKTCCALAWAAKRLRHYMINHTTWLISKMDPIKYIFEKP 1653
              VI Y S++    E  Y   +    A+ +A K  R Y+      + +    +KYIF +P
Sbjct: 808  --VIAYASRQLMKHEGNYPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQP 865

Query: 1654 ALTGRIARWQMLLSEYDIE 1672
             L  R  RW  L+++YD+E
Sbjct: 866  ELNLRQRRWMELVADYDLE 884



 Score = 33.1 bits (74), Expect = 1.9
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 10/113 (8%)

Query: 1974 LRAGYYWITMHADCYNHAKRCHKCQIYADKIHIPPSMLNVISSP-WPFSMWGIDMIGRIE 2032
            L+  Y W+ M  D  N    C  CQ+   +  +   ML  +  P W +    +D++  + 
Sbjct: 965  LKRYYQWVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITMDLV--VG 1022

Query: 2033 PKASNGHRFILVAIDYFTKWVEAASYANVTK----QVVVRFIKNNLISRYGVP 2081
             + S     I V +D  TK   +A +  + K     V+ +   + ++  +GVP
Sbjct: 1023 LRVSRTKDAIWVIVDRLTK---SAHFLAIRKTDGAAVLAKKFVSEIVKLHGVP 1072


>At2g04670 putative retroelement pol polyprotein
          Length = 1411

 Score =  268 bits (684), Expect = 4e-71
 Identities = 153/460 (33%), Positives = 248/460 (53%), Gaps = 13/460 (2%)

Query: 1235 IELIREYVDIFAWSYKDMPGLDPDVVE-HRLPLKPECPPVKQKLRRSHPDMALKIKEEVR 1293
            I +I+E+ D+F    + + GL P   +   + L+P   P+ +   R  P    ++K+++ 
Sbjct: 483  IRVIQEFEDVF----QSLQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMTELKKQLE 538

Query: 1294 KQIDAGFLVTSEYPQWLANIVPVPKKDGKIRMCVDYRDLNKASPKDNFPLPHIDVLVDNT 1353
              +  GF+  S  P W A ++ V KKDG  R+C+DYR LN  + K+ +PLP ID L+D  
Sbjct: 539  DLLGKGFIRPSTSP-WGAPVLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQL 597

Query: 1354 AKCKVFSFMDGFSGYNQIRMAPEDREKTSFITPWGAFCYVVMPFGLINAGATYQRGMTKI 1413
                 FS +D  SGY+QI +A  D  KT+F T +G F +VVMPF L NA A + R M  +
Sbjct: 598  RGATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFALTNAPAAFMRLMNSV 657

Query: 1414 FHDMIHKEIEVYVDDMIVKSGTEEEHVEYLLKMFQRLRKYKLRLNPNKCTFGVRSGKLLG 1473
            F + + + + +++DD++V S + EEH  +L ++ ++LR+ KL    +KC+F  R    LG
Sbjct: 658  FQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREIGFLG 717

Query: 1474 FIVSQKGIEVDPDKVRAIREMPVPKTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRK 1533
             IVS +G+ VDP+K+ AIR+ P P    ++R FL    Y  RF+    +   P+ KL  K
Sbjct: 718  HIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLRLTGYYRRFVKGFASMAQPMTKLTGK 777

Query: 1534 DQGVKWNDDCQKAFDQIKEYLLEPPILVPPVDGRPLIMYLTVLEDSMGCVLGQQDETGKK 1593
            D    W+ +C++ F  +KE L   P+L  P  G+P ++Y       +GCVL Q+ +    
Sbjct: 778  DVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQRGK---- 833

Query: 1594 EHVIYYLSKKFTDCESRYSVLEKTCCALAWAAKRLRHYMINHTTWLISKMDPIKYIFEKP 1653
              VI Y S++    E  Y   +     + +A K  R Y+      + +    +KYIF +P
Sbjct: 834  --VIAYASRQLRKHEGNYPTHDLEMAVVIFALKIWRSYLYGGKVQVFTDHKSLKYIFNQP 891

Query: 1654 ALTGRIARWQMLLSEYDIEYRTQKAVKGSILAEHLAHQPI 1693
             L  R  RW  L+++YD+E       K +++A+ L+ + +
Sbjct: 892  ELNLRQMRWMELVADYDLEIAYHPG-KANVVADALSRKRV 930



 Score = 64.7 bits (156), Expect = 6e-10
 Identities = 71/345 (20%), Positives = 130/345 (37%), Gaps = 60/345 (17%)

Query: 1942 CVDKHEA--EKLMCEIHEGSFGTHSCGHAMAKKILRAGYYWITMHADCYNHAKRCHKCQI 1999
            CV K E    +++ E H   F  H     M + + R  Y W+ M  D  N    C  CQ+
Sbjct: 1008 CVPKDEELRREILSEAHASMFSIHPGATKMYRDLKRY-YQWVGMKRDVANWVAECDVCQL 1066

Query: 2000 YADKIHIPPSMLNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYA 2059
               +  +P +                                I V +D  TK   +A + 
Sbjct: 1067 VKAEHQVPDA--------------------------------IWVIMDRLTK---SAHFL 1091

Query: 2060 NVTKQ----VVVRFIKNNLISRYGVPNRIITDNGTNLNNNMMKELCDDFKIQHHNSSPYR 2115
             + K     V+ +   + ++  +GVP  I++D  +       +        +   S+ Y 
Sbjct: 1092 AIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYH 1151

Query: 2116 PQMNGAVEAANKNIKKIIQKMVVTYKD-WHEMLPYALYGYRTSVRTSTGATPFSLVYGME 2174
            PQ +G  E   + ++ +++  V+ +   W + L    + Y  S + S G  PF  +YG  
Sbjct: 1152 PQTDGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRP 1211

Query: 2175 AVLPVEVEIPSLRVLMEAELSEAEWCQSRYDQLNLIEEKRMAALCHGQLYQSRMKQAFDK 2234
               P+         + E  +  A++ Q   +++ +++     A       Q+R +   DK
Sbjct: 1212 CWTPLR-----WTQVEERSIYGADYVQETTERIRVLKLNMKEA-------QARQRSYADK 1259

Query: 2235 GVHPREFKEGDLVLKCIKSFQPDPRG----KWTPNYEGPY-VVKR 2274
                 EF+ GD V   +   +   R     K +P Y GP+ +V+R
Sbjct: 1260 RRRELEFEVGDRVYLKMAMLRGPNRSILETKLSPRYMGPFRIVER 1304


>At4g03800
          Length = 637

 Score =  263 bits (672), Expect = 9e-70
 Identities = 136/337 (40%), Positives = 211/337 (62%), Gaps = 21/337 (6%)

Query: 1252 MPGLDPDVVEHRLPLKPECPPVKQKLRRSHPDMALKIKEEVRKQIDAGFLVTSEYPQWLA 1311
            MP +DP ++ H L + P   P+KQK R+   + A  +  ++ K +  G +   +YP W+A
Sbjct: 321  MPDIDPSIICHELNVDPRFKPLKQKRRKLGVERAKAVNGKIDKLLKIGSIREVQYPDWVA 380

Query: 1312 NIVPVPKKDGKIRMCVDYRDLNKASPKDNFPLPHIDVLVDNTAKCKVFSFMDGFSGYNQI 1371
              V V KK+GK R+C+D+ DLNKA PKD+FPLPHID LV++TA  ++ +FMD F GYNQI
Sbjct: 381  ITVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFLGYNQI 440

Query: 1372 RMAPEDREKTSFITPWGAFCYVVMPFGLINAGATYQRGMTKIFHDMIHKEIEVYVDDMIV 1431
             M PED+EKTSFIT               + GATYQ  + K+F++ + K +EV +DD +V
Sbjct: 441  MMNPEDQEKTSFIT---------------DRGATYQWLVNKMFNEHLRKTMEVSIDDTLV 485

Query: 1432 KSGTEEEHVEYLLKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAI 1491
            KS  +E+HV++L + F+ L +Y+++LN  KCTFGV SG+ LG+IV+++GIE +P+++ A 
Sbjct: 486  KSLKKEDHVKHLGECFEILNQYQMKLNLAKCTFGVPSGEFLGYIVTKRGIEANPNQINAF 545

Query: 1492 REMPVPKTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKDQGVKWNDDCQKAFDQIK 1551
             + P  +  K+V+   GR+       S  T    P +++L+ + G  W++ C++AF Q+K
Sbjct: 546  LKTPSLRNFKEVQRLTGRI------ASRSTDKSLPFYQILKGNNGFLWDEKCEEAFRQLK 599

Query: 1552 EYLLEPPILVPPVDGRPLIMYLTVLEDSMGCVLGQQD 1588
             YL  PP+L  P     L +Y+ V   ++  VL ++D
Sbjct: 600  AYLTTPPVLSKPEADEKLYLYVFVSNHAVSGVLVRED 636



 Score = 64.3 bits (155), Expect = 8e-10
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 14/144 (9%)

Query: 868  CNSLTFSDEDLPAEGNKHNRALLISVLCRTDSLSNVLIDTGSALNVMPKSTLDQLAYSEA 927
            C+S++F +E+       H+ AL+I++      +S +L+DTGS+++++       L     
Sbjct: 182  CSSVSFDEEETRHIERPHDDALIITLDVANFKISRILVDTGSSVDLIFLGPPSPLV---- 237

Query: 928  PLRLSKVTVRAFDGTRRSVYGEVDLPISVGPHEFQVTFQVMEIQASFSCLLGRPWIHDAG 987
                      AF        G + LP+  G     V F V +  A+++ +LG PWI    
Sbjct: 238  ----------AFTSESAMSLGTIKLPVLAGKMSKIVDFVVFDKPATYNIILGTPWIFQMK 287

Query: 988  AVTSTLHQKLKFVSRGKLITVSGE 1011
            AV ST HQ LKF +   + T+ G+
Sbjct: 288  AVPSTYHQWLKFPTSNGVETIWGD 311


>At2g07660 putative retroelement pol polyprotein
          Length = 949

 Score =  262 bits (669), Expect = 2e-69
 Identities = 145/414 (35%), Positives = 236/414 (56%), Gaps = 16/414 (3%)

Query: 1221 KIGASLDVSIKKRVIELIREYVDIFAWSYKDMPGLDPDVVE-HRLPLKPECPPVKQKLRR 1279
            ++GAS ++    + I ++ E+ D+FA     + G+ PD  +   + L+P   P+ +   R
Sbjct: 110  EVGASAEL----KDILIVNEFSDVFA----AVSGVPPDRSDPFTIELEPGTTPISKAPYR 161

Query: 1280 SHPDMALKIKEEVRKQIDAGFLVTSEYPQWLANIVPVPKKDGKIRMCVDYRDLNKASPKD 1339
              P    ++K+++ + +  GF+  S  P W A ++ V KKDG  R+C+DYR LNK + K+
Sbjct: 162  MAPAEMAELKKQLEELLAKGFIRPSSSP-WGAPVLFVKKKDGSFRLCIDYRGLNKVTVKN 220

Query: 1340 NFPLPHIDVLVDNTAKCKVFSFMDGFSGYNQIRMAPEDREKTSFITPWGAFCYVVMPFGL 1399
             +PLP ID L+D     + FS +D  SGY+QI + P D  KT+F T +G F +VVMPFGL
Sbjct: 221  KYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYGHFEFVVMPFGL 280

Query: 1400 INAGATYQRGMTKIFHDMIHKEIEVYVDDMIVKSGTEEEHVEYLLKMFQRLRKYKLRLNP 1459
             NA A + + M  +F D + + + +++DD++V S + E H E+L  + +RLR+++L    
Sbjct: 281  TNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVHSKSWEAHQEHLRAVLERLREHELFAKL 340

Query: 1460 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPVPKTEKQVRGFLGRLNYISRFISH 1519
            +K +F  RS   LG ++S +G+ VDP+K+R+I+E P P+   ++R FLG   Y  RF+  
Sbjct: 341  SKFSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMS 400

Query: 1520 MTATCGPIFKLLRKDQGVKWNDDCQKAFDQIKEYLLEPPILVPPVDGRPLIMYLTVLEDS 1579
              +   P+ +L  KD    W+D+C+K+F ++K  L+  P+LV P +G P  +Y       
Sbjct: 401  FASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLINAPVLVLPEEGEPYTVYTDASIVG 460

Query: 1580 MGCVLGQQDETGKKEHVIYYLSKKFTDCESRYSVLEKTCCALAWAAKRLRHYMI 1633
            +GCVL Q      K  VI Y S++    E  Y   +    A+ +A K  R Y+I
Sbjct: 461  LGCVLMQ------KGSVIAYASRQLRKHEKNYPTHDLEMAAVVFALKIWRSYLI 508



 Score = 91.7 bits (226), Expect = 5e-18
 Identities = 77/361 (21%), Positives = 151/361 (41%), Gaps = 26/361 (7%)

Query: 1925 LNEDVLYKRNFDGVLLR----CVDKHEA--EKLMCEIHEGSFGTHSCGHAMAKKILRAGY 1978
            LN    Y+ + +G ++     CV    A  E+++ E H+  F  H   + M + + R  Y
Sbjct: 523  LNNKTEYQTSNNGTIVVNGRVCVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-Y 581

Query: 1979 YWITMHADCYNHAKRCHKCQIYADKIHIPPSML-NVISSPWPFSMWGIDMIGRIEPKASN 2037
            +W+ M  D      +C  CQ+   +  +P  +L N+  S W +    +D + R+     +
Sbjct: 582  HWVGMRKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKS 641

Query: 2038 GHRFILVAIDYFTKWVEAASYANVT-KQVVVRFIKNNLISRYGVPNRIITDNGTNLNNNM 2096
             H  + V +D  TK     + ++    +++     + ++  +G+P  I++D  T   +  
Sbjct: 642  KHNAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYIDEIMRLHGIPVSIVSDRDTRFTSKF 701

Query: 2097 MKELCDDFKIQHHNSSPYRPQMNGAVEAANKNIKKIIQKMVVTY-KDWHEMLPYALYGYR 2155
                      + + S+ Y PQ +G  E   + ++ +++  V+ +  +W + L    + Y 
Sbjct: 702  WNAFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYN 761

Query: 2156 TSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRVLMEAELSEAEWCQSRYDQLNLIEEKRM 2215
             S + S G +P+  +YG     P+       R L    + +    + ++ ++ L E    
Sbjct: 762  NSFQASIGMSPYEALYGRACRTPLCWTPVGERRLFGPTIVDETTERMKFLKIKLKEA--- 818

Query: 2216 AALCHGQLYQSRMKQAFDKGVHPREFKEGDLVLKCIKSFQP----DPRGKWTPNYEGPYV 2271
                     Q R K   +K     EF+ GDLV     +++       R K +P Y GPY 
Sbjct: 819  ---------QDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYK 869

Query: 2272 V 2272
            V
Sbjct: 870  V 870


>At1g37060 Athila retroelment ORF 1, putative
          Length = 1734

 Score =  258 bits (659), Expect = 3e-68
 Identities = 154/497 (30%), Positives = 252/497 (49%), Gaps = 49/497 (9%)

Query: 1234 VIELIREYVDIFAWSYKDMPGLDPDVVEHRLPLKPECPPVKQKLRRSHPDMALKIKEEVR 1293
            +I  + +Y     +S  D+ G+ P +  HR+ L+ E     +  RR +P++   +K+E+ 
Sbjct: 861  LITELMKYRKAIGYSLDDIKGISPTLCTHRIHLENESYSSIEPQRRLNPNLKEVVKKEIL 920

Query: 1294 KQIDAGFLVTSEYPQWLANIVPVPKKDGKI------------------RMCVDYRDLNKA 1335
            K +DAG +       W++ +  VPKK G                    RMC++YR LN A
Sbjct: 921  KLLDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNSKDELIPTRTITGHRMCIEYRKLNVA 980

Query: 1336 SPKDNFPLPHIDVLVDNTAKCKVFSFMDGFSGYNQIRMAPEDREKTSFITPWGAFCYVVM 1395
            S K++FPLP ID +++  A    + F+D +SG+ QI + P D+ KT+F  P+G F Y  M
Sbjct: 981  SRKEHFPLPFIDHMLERLANHPYYCFLDSYSGFFQIPIHPNDQGKTTFTCPYGTFAYKRM 1040

Query: 1396 PFGLINAGATYQRGMTKIFHDMIHKEIEVYVDDMIVKSGTEEEHVEYLLKMFQRLRKYKL 1455
            PFGL NA AT+QR MT IF D+I + +EV++DD  V   +    +  L ++ +R  +  L
Sbjct: 1041 PFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSSFSSCLLNLCRVLKRCEETNL 1100

Query: 1456 RLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPVPKTEKQVRGFLGRLNYISR 1515
             LN  KC F VR G +LG  +S++GIEVD  K+  + ++  PKT K +R FLG   +   
Sbjct: 1101 VLNWEKCHFMVREGIVLGRKISEEGIEVDKAKIDVMMQLQPPKTVKDIRSFLGHAGFYRI 1160

Query: 1516 FISHMTATCGPIFKLLRKDQGVKWNDDCQKAFDQIKEYLLEPPILVPPVDGRPLIMYLTV 1575
            FI   +    P+ +LL K+    ++D+C  AF  IKE L+  PI+  P    P  +    
Sbjct: 1161 FIKDFSKLARPLTRLLCKETEFAFDDECLTAFKLIKEALITAPIVQAPNWDFPFEII--- 1217

Query: 1576 LEDSMGCVLGQQDETGKKEHVIYYLSKKFTDCESRYSVLEKTCCALAWAAKRLRHYMINH 1635
                                          D + RY+  EK   A+ +A ++ R Y++  
Sbjct: 1218 ---------------------------TMDDAQVRYATTEKELLAVVFAFEKFRSYLVGS 1250

Query: 1636 TTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRTQKAVKGSILAEHLAHQPIED 1695
               + +    +++I+ K     R+ RW +LL E+D+E   +K ++  + A+HL+   IED
Sbjct: 1251 KVTIYTDHAALRHIYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGV-ADHLSRMRIED 1309

Query: 1696 YQPIKFDFPDKEVMYLK 1712
               I    P++++M ++
Sbjct: 1310 EVLIDDSMPEEQLMAIQ 1326



 Score =  200 bits (509), Expect = 7e-51
 Identities = 133/419 (31%), Positives = 204/419 (47%), Gaps = 39/419 (9%)

Query: 1890 PWYHDIQVFLQTQKYPPGASNKDKKTLRKLSSRFFLNEDVLYKRNFDGVLLRCVDKHEAE 1949
            PWY D   +L + + PP  S+ +KK   K  + F+ +E  LY    D +   CV + E E
Sbjct: 1334 PWYADHVNYLVSGEEPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDKIYRTCVSEDEIE 1393

Query: 1950 KLMCEIHEGSFGTHSCGHAMAKKILRAGYYWITMHADCYNHAKRCHKCQIYADKIHIPPS 2009
             ++   H  ++G H        KIL+AG++W +M  D      +C   +           
Sbjct: 1394 GILLHCHGFAYGGHFATFKTMSKILQAGFWWPSMFKDAQEFISKCDSFE----------- 1442

Query: 2010 MLNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVRF 2069
                      F +WGID +G     +S G+++ILVAIDY +KWVEA +      +VV++ 
Sbjct: 1443 ---------NFDVWGIDFMGPF--PSSYGNKYILVAIDYVSKWVEAIASHTNDARVVLKL 1491

Query: 2070 IKNNLISRYGVPNRIITDNGTNLNNNMMKELCDDFKIQHHNSSPYRPQMNGAVEAANKNI 2129
             K  +  R+GVP  +I+D G +  N   + L     ++H  S        G VE +N+ I
Sbjct: 1492 FKTIIFPRFGVPRIVISDGGKHFINKGFENLLKKHGVKHKTS--------GQVEISNREI 1543

Query: 2130 KKIIQKMV-VTYKDWHEMLPYALYGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRV 2188
            K I++K V  T KDW   L   L+ YRT+ +T  G TPF+L+YG    LPVE+E  ++  
Sbjct: 1544 KAILEKTVGSTRKDWSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVELEYKAMWA 1603

Query: 2189 --LMEAELSEAEWCQSRYDQLNLIEEKRMAALCHGQLYQSRMKQAFDKGVHPREFKEGDL 2246
              L+  ++  AE  + R  QLN + + R+ A    ++Y+ R K   DK +  R+FK GD 
Sbjct: 1604 VKLLNFDIKTAE--EKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQ 1661

Query: 2247 VLKCIKSFQPDPRGKWTPNYEGPYVVKRAFSGGALILTNMDGEELPRPVNSDAVKKYFV 2305
            VL      +  P GK    + GP+ V      GA+ L   +G+     VN   +KKY +
Sbjct: 1662 VLLFNSRLRLFP-GKLKSRWSGPFSVTAVRPYGAITLAGKNGD---FTVNGQRLKKYMI 1716



 Score = 35.4 bits (80), Expect = 0.39
 Identities = 20/69 (28%), Positives = 34/69 (48%), Gaps = 2/69 (2%)

Query: 260 IHCFQDSLTGPAHTWFMGLK--GVTTFEQLAEAFMQQYKYNTYLAPSRKELQSLTQKDKE 317
           +  F  SL   AH W   L    +T++    +AF+ ++  N+  A  R ++   TQ + E
Sbjct: 88  LRLFPFSLGDKAHQWEKSLPQGSITSWNDCKKAFLAKFFSNSRTARLRNDISGFTQTNNE 147

Query: 318 SFKEYAQRF 326
           +F E  +RF
Sbjct: 148 TFYEAWERF 156



 Score = 35.0 bits (79), Expect = 0.51
 Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 7/103 (6%)

Query: 899 SLSNVLIDTGSALNVMPKSTLDQLAYSE-APLRLSKVTVRAFDGTRRSVYGEV-DLPISV 956
           + S  L D G+++++MP     +L +++  P  +S +     D + R  +G + DLP+ +
Sbjct: 612 AFSKCLCDLGASVSLMPLPVAKKLGFNKYKPCNISLILA---DRSVRISHGLLEDLPVMI 668

Query: 957 GPHEFQVTFQVMEI--QASFSCLLGRPWIHDAGAVTSTLHQKL 997
           G  E    F V+E+  +     +LGRP++  A A+      K+
Sbjct: 669 GVVEVPTDFVVLEMDEEPKDPLILGRPFLARARAIIDVKKGKI 711


>At2g15100 putative retroelement pol polyprotein
          Length = 1329

 Score =  256 bits (654), Expect = 1e-67
 Identities = 166/558 (29%), Positives = 274/558 (48%), Gaps = 74/558 (13%)

Query: 1804 NQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALATLSSMINVNGHN 1863
            N+  GE+E +   +  Y +  R +   F + EL  +PR EN  A+ALA L+S   V    
Sbjct: 790  NRYSGEYEAKDACMEAYLNLVREVSGRFEQFELTRIPRAENSAANALAALASTFEVTLPR 849

Query: 1864 TVPVINVQF----LDRPAYVFVA---------------------EAIDD----------- 1887
             +PV  +      LD  ++V                        E I D           
Sbjct: 850  VIPVETISQPSIRLDEISFVTTRAMRRRLDAQSAENGLHQLGDDEEISDAVHPTEIVENQ 909

Query: 1888 -----------DKP-------WYHDIQVFLQTQKYPPGASNKDKKTLRKLSSRFFLNEDV 1929
                       D+P       W   I+ ++     P  A     + L+   +RF +  D+
Sbjct: 910  SLPDNHNAPLPDQPPHDWGADWREPIRDYILNGTLP--AEKWAARKLKATCARFCIANDI 967

Query: 1930 LYKRNFDGVLLRCVDKHEAEKLMCEIHEGSFGTHSCGHAMAKKILRAGYYWITMHADCYN 1989
            LY+R F      C+   +   +M E+H+G+ G H+ G ++A K+ + GYYW T+ ADC  
Sbjct: 968  LYRRIFSAPDAVCIFGEQTRTVMKEVHDGTCGNHTGGRSLAFKVRKYGYYWPTLVADCEA 1027

Query: 1990 HAKRCHKCQIYADKIHIPPSMLNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYF 2049
            +A++C +CQ +A  I  P  +L  +S+P+PF  W +D++G +                  
Sbjct: 1028 YARKCEQCQKHAPLILQPAELLTTVSAPYPFMKWLMDIVGPLHVS--------------- 1072

Query: 2050 TKWVEAASYANVTKQVVVRFIKNNLISRYGVPNRIITDNGTNLNNNMMKELCDDFKIQHH 2109
            T+ VEAA+Y+N+T   V  FI  ++I R+G+P  I+TDNG+   +   +  C++++I+  
Sbjct: 1073 TRGVEAAAYSNITHVQVWNFIWKDIICRHGLPYEIVTDNGSQFISEQFEVFCEEWQIRLS 1132

Query: 2110 NSSPYRPQMNGAVEAANKNIKKIIQKMVVTYKD-WHEMLPYALYGYRTSVRTSTGATPFS 2168
            +S+P  PQ NG  EA NK I   ++K +  YK  W   L   L+  RT+ R +T  TPFS
Sbjct: 1133 HSTPRYPQGNGQAEAMNKTIISNLKKKLNAYKGAWFGELQNVLWAVRTTPRRATDETPFS 1192

Query: 2169 LVYGMEAVLPVEVEIPSLRVLMEAELSEAEWCQSRYDQLNLIEEKRMAALCHGQLYQSRM 2228
            L+YGMEAV+P E+++PS R +   + +E E  +   D ++ I+E+R  AL   Q Y +  
Sbjct: 1193 LIYGMEAVIPAEIKVPSARRIRNPQ-NETENNEMIIDVIDTIDERRNRALARMQNYHNAG 1251

Query: 2229 KQAFDKGVHPREFKEGDLVLKCIKSFQPDP-RGKWTPNYEGPYVVKRAFSGGALILTNMD 2287
             + ++  V  R F+ G LVL+ ++  + +   GK   ++EGPY +      G   L NM+
Sbjct: 1252 ARYYNSNVRNRSFEVGTLVLRRVQQNKAEKGAGKLGISWEGPYKITHVVRNGVYRLINME 1311

Query: 2288 GEELPRPVNSDAVKKYFV 2305
            G+ + R  NS  +K++++
Sbjct: 1312 GKTVRRAWNSMHLKRFYI 1329



 Score =  164 bits (416), Expect = 4e-40
 Identities = 83/151 (54%), Positives = 104/151 (67%)

Query: 1252 MPGLDPDVVEHRLPLKPECPPVKQKLRRSHPDMALKIKEEVRKQIDAGFLVTSEYPQWLA 1311
            M G+  +V+ H L + P   PVKQK R+  PD A  +  EV + ++ G +   +YP+WLA
Sbjct: 412  MTGISTEVISHELNVDPTFKPVKQKRRKLGPDRAQAVNIEVVRLLEVGRIREVKYPEWLA 471

Query: 1312 NIVPVPKKDGKIRMCVDYRDLNKASPKDNFPLPHIDVLVDNTAKCKVFSFMDGFSGYNQI 1371
            N V V KK+GK R+CVD+ DLNKA  KD FPLPHID LV++T   ++ SFMD FSGYNQI
Sbjct: 472  NPVVVKKKNGKWRVCVDFTDLNKACSKDFFPLPHIDRLVESTTGHEMLSFMDAFSGYNQI 531

Query: 1372 RMAPEDREKTSFITPWGAFCYVVMPFGLINA 1402
             M PED+EKTSFIT  G + Y VMPFGL NA
Sbjct: 532  LMNPEDQEKTSFITECGTYYYKVMPFGLKNA 562



 Score = 89.0 bits (219), Expect = 3e-17
 Identities = 45/149 (30%), Positives = 87/149 (58%), Gaps = 10/149 (6%)

Query: 1535 QGVKWNDDCQKAFDQIKEYLLEPPILVPPVDGRPLIMYLTVLEDSMGCVLGQQDETGKKE 1594
            +G  WN+ C++AF Q+K YL EP +L     G  L +Y+ V E ++  V  + + + K+ 
Sbjct: 627  KGFIWNESCEEAFKQLKRYLSEPSVLAKREFGEQLFLYIAVSESAVTGVQVRVERSDKRP 686

Query: 1595 HVIYYLSKKFTDCESRYSVLEKTCCALAWAAKRLRHYMINHTTWLISKMDPIKYIFEKPA 1654
              I+Y+       ++RY ++EK   A+  AA++LR Y  +H   +++ + P++ I   P 
Sbjct: 687  --IFYV-------KTRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTSL-PLRTILHSPT 736

Query: 1655 LTGRIARWQMLLSEYDIEYRTQKAVKGSI 1683
             +GR+ +W + LSE+D+E+R + ++  ++
Sbjct: 737  QSGRLGKWAIELSEFDLEFRARTSLNSTM 765



 Score = 42.7 bits (99), Expect = 0.002
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 17/112 (15%)

Query: 224 FKMPVFEKYQGDTCPQNHLTMYIRRMIAYKNNVPLLIH--------CFQDSLTGPAHTWF 275
           FK+PV   Y G    + HLT +  ++IA    VPL  H         F ++L G A TWF
Sbjct: 173 FKLPV---YNGKGDLKEHLTSF--QVIA--GRVPLEPHEEDAGLCKLFSENLFGLALTWF 225

Query: 276 MGLK--GVTTFEQLAEAFMQQYKYNTYLAPSRKELQSLTQKDKESFKEYAQR 325
             L+   +  F+QL+ AF++QY+Y      +   L + +Q   E  + Y  R
Sbjct: 226 TQLEEGSIDNFKQLSTAFIKQYEYFINSDITEAHLWNFSQSADEPLRTYIYR 277



 Score = 42.7 bits (99), Expect = 0.002
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 14/111 (12%)

Query: 909  SALNVMPKSTLDQLAYSEAPLRLSKVTVRAFDGTRRSVY-------GEVDLPISVGPHEF 961
            SA N  PK+   Q A ++ P  L K       GT  ++        G V LP++      
Sbjct: 314  SASNAAPKAP--QPATTKKPTELRKPAA----GTCTTMLCETSMSLGTVVLPVTAQGVVK 367

Query: 962  QVTFQVMEIQASFSCLLGRPWIHDAGAVTSTLHQKLKFVSR-GKLITVSGE 1011
             V F V +  A+++ +LG PW+++   V ST HQ +KF +  GK+  +S E
Sbjct: 368  MVEFTVFDRPAAYNVILGTPWLYEMKVVPSTYHQCVKFPTPVGKMTGISTE 418


>At2g14650 putative retroelement pol polyprotein
          Length = 1328

 Score =  255 bits (652), Expect = 2e-67
 Identities = 155/503 (30%), Positives = 255/503 (49%), Gaps = 25/503 (4%)

Query: 1192 LEQERKTIQPHQEEIEIINLGTEEDKKEIKIGASLDVSIKKRVIELIREYVDIFAWSYKD 1251
            L+  R  +   + E  ++  G       + I A     + ++  E   E+ D+F    + 
Sbjct: 401  LDCHRGRVSFERPEGSLVYQGVRPTSGSLVISAVQAEKMIEKGCEAYLEFEDVF----QS 456

Query: 1252 MPGLDPDVVE-HRLPLKPECPPVKQKLRRSHPDMALKIKEEVRKQIDAGFLVTSEYPQWL 1310
            + GL P   +   + L+P   P+ +   R  P    ++K+++   + A  L         
Sbjct: 457  LQGLPPSRSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLEDLLGAPVLF-------- 508

Query: 1311 ANIVPVPKKDGKIRMCVDYRDLNKASPKDNFPLPHIDVLVDNTAKCKVFSFMDGFSGYNQ 1370
                 V KKDG  R+C+DYR LN  + K+ +PLP ID L+D       FS +D  SGY+ 
Sbjct: 509  -----VKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHL 563

Query: 1371 IRMAPEDREKTSFITPWGAFCYVVMPFGLINAGATYQRGMTKIFHDMIHKEIEVYVDDMI 1430
            I +A  D  KT+F T +G F +VVMPFGL NA A + R M  +F +++ + + +++DD++
Sbjct: 564  IPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDIL 623

Query: 1431 VKSGTEEEHVEYLLKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRA 1490
            V S + EEH  +L ++ ++LR+ KL    +KC+F  R    LG IVS +G+ VDP+K+ A
Sbjct: 624  VYSKSLEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEA 683

Query: 1491 IREMPVPKTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKDQGVKWNDDCQKAFDQI 1550
            IR+   P    ++R FLG   Y  RF+    +   P+ KL  KD    W+ +C++ F  +
Sbjct: 684  IRDWHTPTNATEIRSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSL 743

Query: 1551 KEYLLEPPILVPPVDGRPLIMYLTVLEDSMGCVLGQQDETGKKEHVIYYLSKKFTDCESR 1610
            KE L   P+L  P  G P ++Y       +GCVL Q+ +      VI Y S++    E  
Sbjct: 744  KEMLTSTPVLALPEHGEPYMVYTDASGVGLGCVLMQRGK------VIAYASRQLRKHEGN 797

Query: 1611 YSVLEKTCCALAWAAKRLRHYMINHTTWLISKMDPIKYIFEKPALTGRIARWQMLLSEYD 1670
            Y   +    A+ +A K  R Y+      + +    +KYIF +P L  R  +W  L+++YD
Sbjct: 798  YPTHDLEMAAVIFALKIWRSYLYGGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYD 857

Query: 1671 IEYRTQKAVKGSILAEHLAHQPI 1693
            +E       K +++A+ L+H+ +
Sbjct: 858  LEIAYHPG-KANVVADALSHKRV 879



 Score = 63.5 bits (153), Expect = 1e-09
 Identities = 65/300 (21%), Positives = 120/300 (39%), Gaps = 28/300 (9%)

Query: 1986 DCYNHAKRCHKCQIYADKIHIPPSMLNVISSP-WPFSMWGIDMIGRIEPKASNGHRFILV 2044
            D  N    C  CQ+   +  +P  ML  +  P W +    ID +  +    S     I V
Sbjct: 942  DVANWVAECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFV--VGLPVSRTKDAIWV 999

Query: 2045 AIDYFTKWVEAASYANVTKQ----VVVRFIKNNLISRYGVPNRIITDNGTNLNNNMMKEL 2100
             +D  TK   +A +  + K     V+ +   + ++  +GVP  I++D  +   +   +  
Sbjct: 1000 IVDRLTK---SAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAF 1056

Query: 2101 CDDFKIQHHNSSPYRPQMNGAVEAANKNIKKIIQKMVVTY-KDWHEMLPYALYGYRTSVR 2159
              +   +   S+ Y PQ  G  E   + ++ +++  V+ +   W + L    + Y  S  
Sbjct: 1057 QAEMGTKVQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYP 1116

Query: 2160 TSTGATPFSLVYGMEAVLPVEVEIPSLRVLMEAELSEAEWCQSRYDQLNLIEEKRMAALC 2219
             S G  PF  +Y      P+      L  + E  +  A++ Q   +++ +++     A  
Sbjct: 1117 ASIGMAPFEALYERPCRTPL-----CLTQVGERSIYGADYVQETTERIRVLKLNMKEA-- 1169

Query: 2220 HGQLYQSRMKQAFDKGVHPREFKEGDLVLKCIKSFQPDPRG----KWTPNYEGPY-VVKR 2274
                 Q R +   DK     EF+ GD V   +   +   R     K +P Y GP+ +V+R
Sbjct: 1170 -----QDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFRIVER 1224


>At3g11970 hypothetical protein
          Length = 1499

 Score =  252 bits (643), Expect = 2e-66
 Identities = 154/448 (34%), Positives = 244/448 (54%), Gaps = 16/448 (3%)

Query: 1234 VIELIREYVDIFAWSYKDMPGLDP--DVVEHRLPLKPECPPVKQKLRRSHPDMALKIKEE 1291
            V E++ EY DIF     +   L P  +   H++ L     PV Q+  R       +I + 
Sbjct: 565  VEEVLNEYPDIFI----EPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKL 620

Query: 1292 VRKQIDAGFLVTSEYPQWLANIVPVPKKDGKIRMCVDYRDLNKASPKDNFPLPHIDVLVD 1351
            V   +  G +  S  P + + +V V KKDG  R+CVDYR+LN  + KD+FP+P I+ L+D
Sbjct: 621  VEDLLTNGTVQASSSP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMD 679

Query: 1352 NTAKCKVFSFMDGFSGYNQIRMAPEDREKTSFITPWGAFCYVVMPFGLINAGATYQRGMT 1411
                  +FS +D  +GY+Q+RM P+D +KT+F T  G F Y+VMPFGL NA AT+Q  M 
Sbjct: 680  ELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMN 739

Query: 1412 KIFHDMIHKEIEVYVDDMIVKSGTEEEHVEYLLKMFQRLRKYKLRLNPNKCTFGVRSGKL 1471
             IF   + K + V+ DD++V S + EEH ++L ++F+ +R  KL    +KC F V   + 
Sbjct: 740  FIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEY 799

Query: 1472 LGFIVSQKGIEVDPDKVRAIREMPVPKTEKQVRGFLGRLNYISRFISHMTATCGPIFKLL 1531
            LG  +S +GIE DP K++A++E P P T KQ+RGFLG   Y  RF+       GP+  L 
Sbjct: 800  LGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLHALT 859

Query: 1532 RKDQGVKWNDDCQKAFDQIKEYLLEPPILVPPVDGRPLIMYLTVLEDSMGCVLGQQDETG 1591
            + D   +W    Q+AF+ +K  L + P+L  P+  +  ++        +G VL Q+    
Sbjct: 860  KTD-AFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEG--- 915

Query: 1592 KKEHVIYYLSKKFTDCESRYSVLEKTCCALAWAAKRLRHYMINHTTWLISKMDPIKYIFE 1651
               H + Y+S++    +   S+ EK   A+ +A ++ RHY++     + +    +KY+ E
Sbjct: 916  ---HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLE 972

Query: 1652 KPALTGRIARW--QMLLSEYDIEYRTQK 1677
            +   T    +W  ++L  +Y+I+YR  K
Sbjct: 973  QRLNTPIQQQWLPKLLEFDYEIQYRQGK 1000



 Score = 84.7 bits (208), Expect = 6e-16
 Identities = 83/326 (25%), Positives = 136/326 (41%), Gaps = 23/326 (7%)

Query: 1955 IHEGSFGTHSCGHAMAKKILRAGYYWITMHADCYNHAKRCHKCQIYADKIHIPPSMLNVI 2014
            +H    G HS G  +  + ++  +YW  M  D   + + C  CQ         P +L  +
Sbjct: 1088 LHGSGVGGHS-GRDVTHQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL 1146

Query: 2015 SSPWPFSMWGIDMIGRIEP-KASNGHRFILVAIDYFTKWVEAASYAN-VTKQVVVRFIKN 2072
              P P ++W    +  IE    S G   I+V +D  +K     + ++  +   V     +
Sbjct: 1147 --PIPDTIWSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLD 1204

Query: 2073 NLISRYGVPNRIITDNGTNLNNNMMKELCDDFKIQHHNSSPYRPQMNGAVEAANKNIKKI 2132
            N+   +G P  I++D      +   +E      +    +S Y PQ +G  E  N+ ++  
Sbjct: 1205 NVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETY 1264

Query: 2133 IQKMVVTYKD-WHEMLPYALYGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRVLME 2191
            ++ M       W + L  A Y Y T+  +S+  TPF +VYG   V P  V +P L    +
Sbjct: 1265 LRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQ--VPP--VHLPYLPGESK 1320

Query: 2192 AELSEAEWCQSRYDQLNLIEEKRMAALCHGQLYQSRMKQAFDKGVHPREFKEGDLVLKCI 2251
              +  A   Q R D L  ++   M A       Q RMKQ  D+    REF+ GD V   +
Sbjct: 1321 VAV-VARSLQEREDMLLFLKFHLMRA-------QHRMKQFADQHRTEREFEIGDYVYVKL 1372

Query: 2252 KSFQPD-----PRGKWTPNYEGPYVV 2272
            + ++          K +P Y GPY +
Sbjct: 1373 QPYRQQSVVMRANQKLSPKYFGPYKI 1398



 Score = 31.2 bits (69), Expect = 7.4
 Identities = 28/108 (25%), Positives = 50/108 (45%), Gaps = 7/108 (6%)

Query: 903  VLIDTGSALNVMPKSTLDQLAYSEAPLRLSKVTVRAFDGTRRSVYGEV-DLPISVGPHEF 961
            +LID+GS  N +  +T  +L        L++V+V   DG +  V G+V D    +    F
Sbjct: 403  ILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVA--DGRKLRVEGKVTDFSWKLQTTTF 460

Query: 962  QVTFQVMEIQASFSCLLGRPWIHDAGAVT---STLHQKLKFVSRGKLI 1006
            Q    ++ +Q     +LG  W+   G ++     L  + KF ++  L+
Sbjct: 461  QSDILLIPLQ-GIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLL 507


>At1g36590 hypothetical protein
          Length = 1499

 Score =  252 bits (643), Expect = 2e-66
 Identities = 154/448 (34%), Positives = 244/448 (54%), Gaps = 16/448 (3%)

Query: 1234 VIELIREYVDIFAWSYKDMPGLDP--DVVEHRLPLKPECPPVKQKLRRSHPDMALKIKEE 1291
            V E++ EY DIF     +   L P  +   H++ L     PV Q+  R       +I + 
Sbjct: 565  VEEVLNEYPDIFI----EPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKL 620

Query: 1292 VRKQIDAGFLVTSEYPQWLANIVPVPKKDGKIRMCVDYRDLNKASPKDNFPLPHIDVLVD 1351
            V   +  G +  S  P + + +V V KKDG  R+CVDYR+LN  + KD+FP+P I+ L+D
Sbjct: 621  VEDLLTNGTVQASSSP-YASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMD 679

Query: 1352 NTAKCKVFSFMDGFSGYNQIRMAPEDREKTSFITPWGAFCYVVMPFGLINAGATYQRGMT 1411
                  +FS +D  +GY+Q+RM P+D +KT+F T  G F Y+VMPFGL NA AT+Q  M 
Sbjct: 680  ELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMN 739

Query: 1412 KIFHDMIHKEIEVYVDDMIVKSGTEEEHVEYLLKMFQRLRKYKLRLNPNKCTFGVRSGKL 1471
             IF   + K + V+ DD++V S + EEH ++L ++F+ +R  KL    +KC F V   + 
Sbjct: 740  FIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEY 799

Query: 1472 LGFIVSQKGIEVDPDKVRAIREMPVPKTEKQVRGFLGRLNYISRFISHMTATCGPIFKLL 1531
            LG  +S +GIE DP K++A++E P P T KQ+RGFLG   Y  RF+       GP+  L 
Sbjct: 800  LGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLHALT 859

Query: 1532 RKDQGVKWNDDCQKAFDQIKEYLLEPPILVPPVDGRPLIMYLTVLEDSMGCVLGQQDETG 1591
            + D   +W    Q+AF+ +K  L + P+L  P+  +  ++        +G VL Q+    
Sbjct: 860  KTD-AFEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEG--- 915

Query: 1592 KKEHVIYYLSKKFTDCESRYSVLEKTCCALAWAAKRLRHYMINHTTWLISKMDPIKYIFE 1651
               H + Y+S++    +   S+ EK   A+ +A ++ RHY++     + +    +KY+ E
Sbjct: 916  ---HPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLE 972

Query: 1652 KPALTGRIARW--QMLLSEYDIEYRTQK 1677
            +   T    +W  ++L  +Y+I+YR  K
Sbjct: 973  QRLNTPIQQQWLPKLLEFDYEIQYRQGK 1000



 Score = 79.7 bits (195), Expect = 2e-14
 Identities = 82/326 (25%), Positives = 136/326 (41%), Gaps = 23/326 (7%)

Query: 1955 IHEGSFGTHSCGHAMAKKILRAGYYWITMHADCYNHAKRCHKCQIYADKIHIPPSMLNVI 2014
            +H    G HS G  +  + ++  +Y   M  D   + + C  CQ         P +L  +
Sbjct: 1088 LHGSGVGGHS-GRDVTHQRVKGLFYSKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL 1146

Query: 2015 SSPWPFSMWGIDMIGRIEP-KASNGHRFILVAIDYFTKWVEAASYAN-VTKQVVVRFIKN 2072
              P P ++W    +  IE    S G   I+V +D  +K     + ++  +   V +   +
Sbjct: 1147 --PIPDTIWSEVSMDFIEGLPVSGGKTVIMVVVDRLSKAAHFIALSHPYSALTVAQAYLD 1204

Query: 2073 NLISRYGVPNRIITDNGTNLNNNMMKELCDDFKIQHHNSSPYRPQMNGAVEAANKNIKKI 2132
            N+   +G P  I++D      +   +E      +    +S Y PQ +G  E  N+ ++  
Sbjct: 1205 NVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETY 1264

Query: 2133 IQKMVVTYKD-WHEMLPYALYGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRVLME 2191
            ++ M       W + L  A Y Y T+  +S+  TPF +VYG   V P  V +P L    +
Sbjct: 1265 LRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQ--VPP--VHLPYLPGESK 1320

Query: 2192 AELSEAEWCQSRYDQLNLIEEKRMAALCHGQLYQSRMKQAFDKGVHPREFKEGDLVLKCI 2251
              +  A   Q R D L  ++   M A       Q RMKQ  D+    REF+ GD V   +
Sbjct: 1321 VAV-VARSLQEREDMLLFLKFHLMRA-------QHRMKQFADQHRTEREFEIGDYVYVKL 1372

Query: 2252 KSFQPD-----PRGKWTPNYEGPYVV 2272
            + ++          K +P Y GPY +
Sbjct: 1373 QPYRQQSVVMRANQKLSPKYFGPYKI 1398



 Score = 31.2 bits (69), Expect = 7.4
 Identities = 28/108 (25%), Positives = 50/108 (45%), Gaps = 7/108 (6%)

Query: 903  VLIDTGSALNVMPKSTLDQLAYSEAPLRLSKVTVRAFDGTRRSVYGEV-DLPISVGPHEF 961
            +LID+GS  N +  +T  +L        L++V+V   DG +  V G+V D    +    F
Sbjct: 403  ILIDSGSTHNFLDPNTAAKLGCKVDTAGLTRVSVA--DGRKLRVEGKVTDFSWKLQTTTF 460

Query: 962  QVTFQVMEIQASFSCLLGRPWIHDAGAVT---STLHQKLKFVSRGKLI 1006
            Q    ++ +Q     +LG  W+   G ++     L  + KF ++  L+
Sbjct: 461  QSDILLIPLQ-GIDMVLGVQWLETLGRISWEFKKLEMRFKFNNQKVLL 507


>At1g35370 hypothetical protein
          Length = 1447

 Score =  240 bits (612), Expect = 8e-63
 Identities = 155/468 (33%), Positives = 252/468 (53%), Gaps = 21/468 (4%)

Query: 1213 TEEDKKEIKIGASLDVSIKKRVIE-LIREYVDIFAWSYKDMPGLDPDVVEHRLPLKPECP 1271
            ++E+++   I A     +++ V++ ++ E+ D+FA    D+P    +  +H++ L     
Sbjct: 522  SDEEQEIGSISALTSDVVEESVVQNIVEEFPDVFA-EPTDLPPFR-EKHDHKIKLLEGAN 579

Query: 1272 PVKQKLRRSHPDMALKIKEEVRKQIDAGFLVTSEYPQWLANIVPVPKKDGKIRMCVDYRD 1331
            PV Q+  R       +I + V+  I +G +  S  P + + +V V KKDG  R+CVDY +
Sbjct: 580  PVNQRPYRYVVHQKDEIDKIVQDMIKSGTIQVSSSP-FASPVVLVKKKDGTWRLCVDYTE 638

Query: 1332 LNKASPKDNFPLPHIDVLVDNTAKCKVFSFMDGFSGYNQIRMAPEDREKTSFITPWGAFC 1391
            LN  + KD F +P I+ L+D      VFS +D  +GY+Q+RM P+D +KT+F T  G F 
Sbjct: 639  LNGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTHNGHFE 698

Query: 1392 YVVMPFGLINAGATYQRGMTKIFHDMIHKEIEVYVDDMIVKSGTEEEHVEYLLKMFQRLR 1451
            Y+VM FGL NA AT+Q  M  +F D + K + V+ DD+++ S + EEH E+L  +F+ +R
Sbjct: 699  YLVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVMR 758

Query: 1452 KYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPVPKTEKQVRGFLGRLN 1511
             +KL        F   S + LG  +S + IE DP K++A++E P P T KQVRGFLG   
Sbjct: 759  LHKL--------FAKGSKEHLGHFISAREIETDPAKIQAVKEWPTPTTVKQVRGFLGFAG 810

Query: 1512 YISRFISHMTATCGPIFKLLRKDQGVKWNDDCQKAFDQIKEYLLEPPILVPPVDGRPLIM 1571
            Y  RF+ +     GP+  L + D G  W+ + Q AFD +K  L   P+L  PV  +  ++
Sbjct: 811  YYRRFVRNFGVIAGPLHALTKTD-GFCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMV 869

Query: 1572 YLTVLEDSMGCVLGQQDETGKKEHVIYYLSKKFTDCESRYSVLEKTCCALAWAAKRLRHY 1631
                    +  VL Q      K H + Y+S++    +   S+ EK   A  +A ++ RHY
Sbjct: 870  ETDACGQGIRAVLMQ------KGHPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHY 923

Query: 1632 MINHTTWLISKMDPIKYIFEKPALTGRIARW--QMLLSEYDIEYRTQK 1677
            ++     + +    +KY+ E+   T    +W  ++L  +Y+I+YR  K
Sbjct: 924  LLPSHFIIKTDQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQYRQGK 971



 Score = 87.8 bits (216), Expect = 7e-17
 Identities = 99/446 (22%), Positives = 182/446 (40%), Gaps = 48/446 (10%)

Query: 1835 ELHHVPRDENQMADALATLSSMINVNGHNTVPVINVQFLDRPAYVFVAEAIDDDKPWYHD 1894
            E+ +    EN +ADAL+ +     +  H  + ++   FL      + ++ +  D      
Sbjct: 964  EIQYRQGKENLVADALSRVEGSEVL--HMALSIVECDFLKEIQVAYESDGVLKD------ 1015

Query: 1895 IQVFLQTQKYPPGASNKDKKTLRKLSSRFFLNEDVLYKRNFDGVLLRCVDKHEAEKLMCE 1954
              +    Q++P    +            +  ++D+L +++    ++   D     KL+  
Sbjct: 1016 --IISALQQHPDAKKH------------YSWSQDILRRKS---KIVVPNDVEITNKLLQW 1058

Query: 1955 IHEGSFGTHSCGHAMAKKILRAGYYWITMHADCYNHAKRCHKCQIYADKIHIPPSMLNVI 2014
            +H    G  S G   + + +++ +YW  M  D     + C  CQ         P +L  +
Sbjct: 1059 LHCSGMGGRS-GRDASHQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPL 1117

Query: 2015 SSPWPFSMWGIDMIGRIEPKASNGHR-FILVAIDYFTKWVEAASYAN-VTKQVVVRFIKN 2072
              P P  +W    +  IE   ++G +  I+V +D  +K     + A+  +   V +   +
Sbjct: 1118 --PIPDKIWCDVSMDFIEGLPNSGGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAFLD 1175

Query: 2073 NLISRYGVPNRIITDNGTNLNNNMMKELCDDFKIQHHNSSPYRPQMNGAVEAANKNIKKI 2132
            N+   +G P  I++D      ++  KE      ++   SS Y PQ +G  E  N+ ++  
Sbjct: 1176 NVYKHHGCPTSIVSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENY 1235

Query: 2133 IQKMVVTYKD-WHEMLPYALYGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRVLME 2191
            ++ M       W++ LP A Y Y T+  +S+  TPF LVYG        + +P L    +
Sbjct: 1236 LRCMCHARPHLWNKWLPLAEYWYNTNYHSSSQMTPFELVYGQAP----PIHLPYLPGKSK 1291

Query: 2192 AELSEAEWCQSRYDQLNLIEEKRMAALCHGQLYQSRMKQAFDKGVHPREFKEGDLVLKCI 2251
              +  A   Q R + L  ++   M A       Q RMKQ  D+    R F  GD V   +
Sbjct: 1292 VAV-VARSLQERENMLLFLKFHLMRA-------QHRMKQFADQHRTERTFDIGDFVYVKL 1343

Query: 2252 KSFQPDP-----RGKWTPNYEGPYVV 2272
            + ++          K +P Y GPY +
Sbjct: 1344 QPYRQQSVVLRVNQKLSPKYFGPYKI 1369


>At2g14040 putative retroelement pol polyprotein
          Length = 841

 Score =  228 bits (580), Expect = 4e-59
 Identities = 147/476 (30%), Positives = 234/476 (48%), Gaps = 77/476 (16%)

Query: 1238 IREYVDIFAWSYKDMPGLDPDVVEHRLPLKPECPPVKQKLRRSHPDMALKIKEEVRKQID 1297
            +R+Y     +S  D+ G+ P +  H + L+ E     +  RR + ++   +K+E+ K +D
Sbjct: 340  LRKYRKALGYSLDDITGISPTLCMHMIHLEGESITSVEHQRRLNSNLRDVVKKEIMKLLD 399

Query: 1298 AGFLVTSEYPQWLANIVPVPKKDGKI------------------RMCVDYRDLNKASPKD 1339
            AG +       W++ +  VPKK G I                  RMC+DYR LN A+ KD
Sbjct: 400  AGIIYPISDSTWVSPVHVVPKKGGVIVIKNEKNELIPTRTVTGHRMCIDYRKLNSATRKD 459

Query: 1340 NFPLPHIDVLVDNTAKCKVFSFMDGFSGYNQIRMAPEDREKTSFITPWGAFCYVVMPFGL 1399
            NFPL  ID +++  +    + F+DG+ G+ QI + P+D+EKT+F  P+G F Y  MPFGL
Sbjct: 460  NFPLSFIDQMLERLSNQPYYCFLDGYLGFFQILIHPDDQEKTTFTCPYGTFAYRRMPFGL 519

Query: 1400 INAGATYQRGMTKIFHDMIHKEIEVYVDDMIVKSGTEEEHVEYLLKMFQRLRKYKLRLNP 1459
             NA AT+Q  M  IF DMI   +EV++DD +V    E++H               L LN 
Sbjct: 520  CNAPATFQHCMKYIFSDMIEDFMEVFIDDFLVLQRCEDKH---------------LVLNW 564

Query: 1460 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPVPKTEKQVRGFLGRLNYISRFISH 1519
             K  F VR G +LG  +S+KG+EVD  K+  +R             FLG   +  RFI  
Sbjct: 565  EKSHFMVRDGIVLGHKISEKGVEVDRAKIEIMR-------------FLGHAGFYRRFIKD 611

Query: 1520 MTATCGPIFKLLRKDQGVKWNDDCQKAFDQIKEYLLEPPILVPPVDGRPLIMYLTVLEDS 1579
             +    P  +LL K+Q  +++D C +AF+ +KE L+   I+ PP    P  +     +  
Sbjct: 612  FSKIARPCTQLLCKEQKSEFDDTCLQAFNIVKESLVSALIVQPPEWELPFEVICDASDYV 671

Query: 1580 MGCVLGQQDETGKKEHVIYYLSKKFTDCESRYSVLEKTCCALAWAAKRLRHYMINHTTWL 1639
            +G VLGQ+ +  KK H IYY S+     +                       +I HT   
Sbjct: 672  VGAVLGQRKD--KKLHAIYYASRTLDGAQ-----------------------VIVHTVHA 706

Query: 1640 ISKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRTQKAVKGSILAEHLAHQPIED 1695
                  ++Y+  K     R+ RW +LL ++D+E + +K ++  + A++L+   +++
Sbjct: 707  -----ALRYLLSKKDAKPRLLRWILLLQDFDLEIKDKKGIENEV-ADNLSRLRVQE 756


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,014,894
Number of Sequences: 26719
Number of extensions: 2604361
Number of successful extensions: 10471
Number of sequences better than 10.0: 364
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 217
Number of HSP's that attempted gapping in prelim test: 8140
Number of HSP's gapped (non-prelim): 1400
length of query: 2305
length of database: 11,318,596
effective HSP length: 115
effective length of query: 2190
effective length of database: 8,245,911
effective search space: 18058545090
effective search space used: 18058545090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)