BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146651.7 - phase: 0 /pseudo
         (394 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g34560 katanin like protein                                        431  e-121
At1g80350 CAD ATPase (AAA1)                                           237  7e-63
At2g27600 putative AAA-type ATPase                                    223  1e-58
At3g27120 spastin protein, putative                                   192  4e-49
At4g02470                                                             172  3e-43
At1g50140 hypothetical protein, 5' partial                            170  1e-42
At3g19740 ATPase, putative                                            168  4e-42
At4g24850 unknown protein (At4g24850)                                 167  7e-42
At1g64110 unknown protein                                             164  8e-41
At1g02890 hypothetical protein                                        159  3e-39
At4g28000 putative protein                                            157  1e-38
At2g45500 hypothetical protein                                        153  1e-37
At4g27680 unknown protein                                             152  4e-37
At5g53540 26S proteasome regulatory particle chain RPT6-like pro...   150  1e-36
At5g03340 transitional endoplasmic reticulum ATPase                   147  8e-36
At3g53230 CDC48 - like protein                                        146  2e-35
At3g09840 putative transitional endoplasmic reticulum ATPase          145  3e-35
At1g03000 putative peroxisome assembly factor-2                       135  3e-32
At3g56690 calmodulin-binding protein                                  134  7e-32
At2g03670 putative AAA-type ATPase                                    129  4e-30

>At2g34560 katanin like protein
          Length = 384

 Score =  431 bits (1108), Expect = e-121
 Identities = 248/403 (61%), Positives = 283/403 (69%), Gaps = 32/403 (7%)

Query: 3   ADDEPMPTRWSFEEFKKYYDVRLGRKKLVENGENAVSNGNSSGIASNGNSHGKVTSDRAI 62
           A DEP  TRWSF           GRKKL E     VSN +     S+  ++G V ++ + 
Sbjct: 2   ATDEPSQTRWSF---------LFGRKKLPEED---VSNKDQPEDGSSNGNNGDVNNNSS- 48

Query: 63  YDQFQSQGQNPTHTNGFGPNGVDEKPKKSLLPPFESAEMRTLAESLSRDIIRGSPNVKWE 122
                +Q  N    NG   N + EKPKKS+ PPFESAE RTLAESLSRDIIRG+PN+KWE
Sbjct: 49  --PVTNQDGNTALANG---NVIREKPKKSMFPPFESAETRTLAESLSRDIIRGNPNIKWE 103

Query: 123 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECNTT 182
           SIKGLENAK+LLKEAVVMPIKYP YF GLL+PWKGILLFGPPGTGKTMLAKAVATECNTT
Sbjct: 104 SIKGLENAKKLLKEAVVMPIKYPTYFNGLLTPWKGILLFGPPGTGKTMLAKAVATECNTT 163

Query: 183 FFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQR-GEGRSEHEASR 241
           FFNISASS+VSKWRGDSEKL++VLF+LARHHAP+TIFLDEIDAIISQR GEGRSEHEASR
Sbjct: 164 FFNISASSVVSKWRGDSEKLIRVLFDLARHHAPSTIFLDEIDAIISQRGGEGRSEHEASR 223

Query: 242 RLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLRRLEKR--NQKQEEQCLRNSFLC 299
           RLKTELLIQMDGL +T+ELVFVLAATNLPWELDAAMLRRLEKR      + +  R  F  
Sbjct: 224 RLKTELLIQMDGLQKTNELVFVLAATNLPWELDAAMLRRLEKRILVPLPDPEARRGMFEM 283

Query: 300 SLMRN-------RCPMIYWWTGQKDTQARIFAYFVKKQQCSH*DA**HNLNKNQMWCPK- 351
            +             ++    G   +  RI       Q      A    L   +   P+ 
Sbjct: 284 LIPSQPGDEPLPHDVLVEKSEGYSGSDIRILCKEAAMQPLRRTLA---ILEDREDVVPED 340

Query: 352 KLPKVGPVVPEDVEAALRNTRPSAHLLAHKYDTFNADYGSQIL 394
           +LPK+GP++PED++ AL NTRPSAHL AH YD FN DYGSQIL
Sbjct: 341 ELPKIGPILPEDIDRALSNTRPSAHLHAHLYDKFNDDYGSQIL 383


>At1g80350 CAD ATPase (AAA1)
          Length = 523

 Score =  237 bits (605), Expect = 7e-63
 Identities = 124/270 (45%), Positives = 177/270 (64%), Gaps = 16/270 (5%)

Query: 26  GRKKLVENGENAVSNGNSSGIASNGNSHGKVTSD----RAIYDQFQSQGQNPTHTNGFGP 81
           G +K  ++G  A      +G AS G   G  +      R+     +              
Sbjct: 143 GTRKSPQDGAWARGPTTRTGPASRGGRGGATSKSTAGARSSTAGKKGAASKSNKAESMNG 202

Query: 82  NGVDEKPKKSLLPPFESAEMRTLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMP 141
           +  D K K+ L   +E  +   LA  L RD++  +P V+W+ + GL  AKRLL+EAVV+P
Sbjct: 203 DAEDGKSKRGL---YEGPD-EDLAAMLERDVLDSTPGVRWDDVAGLSEAKRLLEEAVVLP 258

Query: 142 IKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEK 201
           +  P+YF G+  PWKG+L+FGPPGTGKT+LAKAVATEC TTFFN+S++++ SKWRG+SE+
Sbjct: 259 LWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESER 318

Query: 202 LVKVLFELARHHAPATIFLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGLART---- 257
           +V+ LF+LAR +AP+TIF+DEID++ + RG G  EHE+SRR+K+ELL+Q+DG++ T    
Sbjct: 319 MVRCLFDLARAYAPSTIFIDEIDSLCNSRG-GSGEHESSRRVKSELLVQVDGVSNTATNE 377

Query: 258 ---DELVFVLAATNLPWELDAAMLRRLEKR 284
               ++V VLAATN PW++D A+ RRLEKR
Sbjct: 378 DGSRKIVMVLAATNFPWDIDEALRRRLEKR 407


>At2g27600 putative AAA-type ATPase
          Length = 435

 Score =  223 bits (569), Expect = 1e-58
 Identities = 107/188 (56%), Positives = 142/188 (74%), Gaps = 1/188 (0%)

Query: 97  ESAEMRTLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK 156
           E  E   L   L+  I+R  PN+KW  + GLE+AK+ L+EAV++P+K+P++FTG   PW+
Sbjct: 107 EDPEQSKLRAGLNSAIVREKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWR 166

Query: 157 GILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPA 216
             LL+GPPGTGK+ LAKAVATE ++TFF++S+S +VSKW G+SEKLV  LFE+AR  AP+
Sbjct: 167 AFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPS 226

Query: 217 TIFLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAA 276
            IF+DEID++   RGEG +E EASRR+KTELL+QM G+   DE V VLAATN P+ LD A
Sbjct: 227 IIFVDEIDSLCGTRGEG-NESEASRRIKTELLVQMQGVGHNDEKVLVLAATNTPYALDQA 285

Query: 277 MLRRLEKR 284
           + RR +KR
Sbjct: 286 IRRRFDKR 293


>At3g27120 spastin protein, putative
          Length = 327

 Score =  192 bits (487), Expect = 4e-49
 Identities = 105/205 (51%), Positives = 137/205 (66%), Gaps = 9/205 (4%)

Query: 80  GPNGVDEKPKKSLLPPFESAEMRTLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVV 139
           GP+G  E P+K       + E R L E +S +I+   PNV+W+ I GLE+AK+ + E V+
Sbjct: 16  GPDG--ELPEK-----LRNLEPR-LIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVTEMVI 67

Query: 140 MPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDS 199
            P+  P  F G  SP KG+LLFGPPGTGKTM+ KA+A E   TFF ISASS+ SKW G+ 
Sbjct: 68  WPLLRPDIFKGCRSPGKGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEG 127

Query: 200 EKLVKVLFELARHHAPATIFLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGLARTDE 259
           EKLV+ LF +A    PA IF+DEID+++SQR +   EHE+SRRLKT+ LI+M+G     E
Sbjct: 128 EKLVRALFGVASCRQPAVIFVDEIDSLLSQR-KSDGEHESSRRLKTQFLIEMEGFDSGSE 186

Query: 260 LVFVLAATNLPWELDAAMLRRLEKR 284
            + ++ ATN P ELD A  RRL KR
Sbjct: 187 QILLIGATNRPQELDEAARRRLTKR 211


>At4g02470
          Length = 371

 Score =  172 bits (436), Expect = 3e-43
 Identities = 96/183 (52%), Positives = 123/183 (66%), Gaps = 5/183 (2%)

Query: 106 ESLSRDIIRGSP-NVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFG 162
           + L  D+I  S   V ++ I  LEN K  LKE V++P++ P+ F    L  P KGILLFG
Sbjct: 52  KKLLSDVIPPSDIGVSFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTKGILLFG 111

Query: 163 PPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDE 222
           PPGTGKTMLAKAVATE    F NIS SSI SKW G+ EK VK +F LA   AP+ IF+DE
Sbjct: 112 PPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDE 171

Query: 223 IDAIISQRGEGRSEHEASRRLKTELLIQMDGLARTD-ELVFVLAATNLPWELDAAMLRRL 281
           +D+++ +R E   EHEA R++K E ++  DGL   D E V VLAATN P++LD A++RRL
Sbjct: 172 VDSMLGRR-ENPGEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRL 230

Query: 282 EKR 284
            +R
Sbjct: 231 PRR 233


>At1g50140 hypothetical protein, 5' partial
          Length = 601

 Score =  170 bits (431), Expect = 1e-42
 Identities = 89/180 (49%), Positives = 122/180 (67%), Gaps = 4/180 (2%)

Query: 108 LSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPG 165
           +S  +  G   VK+E I  LE+ K+ L E V++P++ P+ F    LL P KGILLFGPPG
Sbjct: 298 VSAVVAPGEIGVKFEDIGALEDVKKALNELVILPMRRPELFARGNLLRPCKGILLFGPPG 357

Query: 166 TGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDA 225
           TGKT+LAKA+ATE    F +I+ S++ SKW GD+EKL K LF  A   AP  IF+DEID+
Sbjct: 358 TGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFATKLAPVIIFVDEIDS 417

Query: 226 IISQRGEGRSEHEASRRLKTELLIQMDGLARTD-ELVFVLAATNLPWELDAAMLRRLEKR 284
           ++  RG G SEHEA+RR++ E +   DGL   D + + +L ATN P++LD A++RRL +R
Sbjct: 418 LLGARG-GSSEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPFDLDDAVIRRLPRR 476


>At3g19740 ATPase, putative
          Length = 439

 Score =  168 bits (426), Expect = 4e-42
 Identities = 87/180 (48%), Positives = 122/180 (67%), Gaps = 4/180 (2%)

Query: 108 LSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPG 165
           +S  +  G   VK++ I  LE+ K+ L E V++P++ P+ FT   LL P KGILLFGPPG
Sbjct: 136 VSAVVAPGEIGVKFDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRPCKGILLFGPPG 195

Query: 166 TGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDA 225
           TGKT+LAKA+ATE    F +I+ S++ SKW GD+EKL K LF  A   AP  IF+DE+D+
Sbjct: 196 TGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDS 255

Query: 226 IISQRGEGRSEHEASRRLKTELLIQMDGLARTD-ELVFVLAATNLPWELDAAMLRRLEKR 284
           ++  RG G  EHEA+RR++ E +   DGL   D + + +L ATN P++LD A++RRL +R
Sbjct: 256 LLGARG-GAFEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPFDLDDAVIRRLPRR 314


>At4g24850 unknown protein (At4g24850)
          Length = 442

 Score =  167 bits (424), Expect = 7e-42
 Identities = 92/180 (51%), Positives = 123/180 (68%), Gaps = 4/180 (2%)

Query: 108 LSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPG 165
           LS  I+    +V ++ I  LE  K +LKE V++P++ P+ F    L  P KGILLFGPPG
Sbjct: 126 LSDVILPSDIDVTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILLFGPPG 185

Query: 166 TGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDA 225
           TGKTMLAKAVA E +  F NIS SSI SKW G+ EK VK +F LA   +P+ IF+DE+D+
Sbjct: 186 TGKTMLAKAVAKEADANFINISMSSITSKWFGEGEKYVKAVFSLASKMSPSVIFVDEVDS 245

Query: 226 IISQRGEGRSEHEASRRLKTELLIQMDGLARTD-ELVFVLAATNLPWELDAAMLRRLEKR 284
           ++ +R   R EHEASR++K E ++  DGL   + E V VLAATN P++LD A++RRL +R
Sbjct: 246 MLGRREHPR-EHEASRKIKNEFMMHWDGLTTQERERVLVLAATNRPFDLDEAVIRRLPRR 304


>At1g64110 unknown protein
          Length = 824

 Score =  164 bits (415), Expect = 8e-41
 Identities = 92/199 (46%), Positives = 126/199 (63%), Gaps = 7/199 (3%)

Query: 88  PKKSLLPPFESAEMRTLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKY 147
           PK   + P    E R   E +  + I    NV ++ I  L+  K  L+E V++P++ P  
Sbjct: 486 PKAPEVAPDNEFEKRIRPEVIPAEEI----NVTFKDIGALDEIKESLQELVMLPLRRPDL 541

Query: 148 FTG-LLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVL 206
           FTG LL P +GILLFGPPGTGKTMLAKA+A E   +F N+S S+I SKW G+ EK V+ L
Sbjct: 542 FTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRAL 601

Query: 207 FELARHHAPATIFLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGL-ARTDELVFVLA 265
           F LA   +P  IF+DE+D+++ QR     EHEA R++K E +   DGL  +  E + VLA
Sbjct: 602 FTLASKVSPTIIFVDEVDSMLGQRTR-VGEHEAMRKIKNEFMSHWDGLMTKPGERILVLA 660

Query: 266 ATNLPWELDAAMLRRLEKR 284
           ATN P++LD A++RR E+R
Sbjct: 661 ATNRPFDLDEAIIRRFERR 679


>At1g02890 hypothetical protein
          Length = 1240

 Score =  159 bits (402), Expect = 3e-39
 Identities = 100/204 (49%), Positives = 126/204 (61%), Gaps = 12/204 (5%)

Query: 85   DEKPKKSLLPPFESAEMRTLAESLSRDIIRGSP-NVKWESIKGLENAKRLLKEAVVMPIK 143
            ++  KKSL       E     + L  D+I  S   V +  I  LEN K  LKE V++P++
Sbjct: 907  NKSTKKSLKDVVTENEFE---KKLLSDVIPPSDIGVSFSDIGALENVKDTLKELVMLPLQ 963

Query: 144  YPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEK 201
             P+ F    L  P KGILLFGPPGTGKTMLAKAVATE    F NIS SSI SK     EK
Sbjct: 964  RPELFGKGQLTKPTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK----GEK 1019

Query: 202  LVKVLFELARHHAPATIFLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGLARTD-EL 260
             VK +F LA   AP+ IF+DE+D+++ +R E   EHEA R++K E +I  DGL   D E 
Sbjct: 1020 YVKAVFSLASKIAPSVIFVDEVDSMLGRR-ENPGEHEAMRKMKNEFMINWDGLRTKDKER 1078

Query: 261  VFVLAATNLPWELDAAMLRRLEKR 284
            V VLAATN P++LD A++RRL +R
Sbjct: 1079 VLVLAATNRPFDLDEAVIRRLPRR 1102


>At4g28000 putative protein
          Length = 726

 Score =  157 bits (397), Expect = 1e-38
 Identities = 101/257 (39%), Positives = 141/257 (54%), Gaps = 21/257 (8%)

Query: 30  LVENGENAVSNGNSSGIASNGNSHGKVTSDRAIYDQFQSQGQNPTHTNGFGPNGVDEKPK 89
           L+ N E    NG    I+SN  SHG              +GQ     +      +D K  
Sbjct: 340 LMNNKEPEYKNGRLV-ISSNSLSHGL---------NILQEGQGCFEDSLKLDTNIDSKE- 388

Query: 90  KSLLPPFESAEMRTLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFT 149
              + P    E R   E +  + I     V +  I  L+  K  L+E V++P++ P  F 
Sbjct: 389 ---VAPDNEFEKRIRPEVIPANEI----GVTFADIGSLDETKESLQELVMLPLRRPDLFK 441

Query: 150 G-LLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFE 208
           G LL P +GILLFGPPGTGKTM+AKA+A E   +F N+S S+I SKW G+ EK V+ LF 
Sbjct: 442 GGLLKPCRGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFT 501

Query: 209 LARHHAPATIFLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGL-ARTDELVFVLAAT 267
           LA   +P  IF+DE+D+++ QR     EHEA R++K E +   DGL +   + + VLAAT
Sbjct: 502 LAAKVSPTIIFVDEVDSMLGQRTR-VGEHEAMRKIKNEFMTHWDGLMSNAGDRILVLAAT 560

Query: 268 NLPWELDAAMLRRLEKR 284
           N P++LD A++RR E+R
Sbjct: 561 NRPFDLDEAIIRRFERR 577


>At2g45500 hypothetical protein
          Length = 481

 Score =  153 bits (387), Expect = 1e-37
 Identities = 117/298 (39%), Positives = 155/298 (51%), Gaps = 50/298 (16%)

Query: 3   ADDEPMPTRWSFEEFKKYYDVRLGRKKLVENGENAVSNG-NSSGIASNGN-------SHG 54
           A   P P+  S  E +K   VR  R+K + N +N VS    + G+  + N       S  
Sbjct: 92  ATSTPSPSYISSSEKEK---VRSYREK-ISNWQNQVSERLQALGVGMSENKRTVAYPSSA 147

Query: 55  KVTSDRAIYDQFQSQGQNPTHTNGFGPNGVDEKPKKSLLPPFESAEMRT--LAESLSRDI 112
            V+S  + Y +  SQ + P    G       +    S  P  ES  +    L E ++  I
Sbjct: 148 SVSSTASRYRKTLSQ-KTPVARGGVATPRNPKDAAASPKPVKESGNVYDDKLVEMINTTI 206

Query: 113 IRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK-----GILLFGPPGTG 167
           +  SP+VKW+ + GL  AK+ L E V++P K    FTGL  P +     G+LLFGPPG G
Sbjct: 207 VDRSPSVKWDDVAGLNGAKQALLEMVILPAKRRDLFTGLRRPARVTSLLGLLLFGPPGNG 266

Query: 168 KTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAII 227
           KTMLAKAVA+E   TFFN+SASS+ SKW                           ID+I+
Sbjct: 267 KTMLAKAVASESQATFFNVSASSLTSKW---------------------------IDSIM 299

Query: 228 SQRGEGRSEHEASRRLKTELLIQMDGL-ARTDELVFVLAATNLPWELDAAMLRRLEKR 284
           S R    SE+EASRRLK+E LIQ DG+ +  D+LV ++ ATN P ELD A+LRRL KR
Sbjct: 300 STR--STSENEASRRLKSEFLIQFDGVTSNPDDLVIIIGATNKPQELDDAVLRRLVKR 355


>At4g27680 unknown protein
          Length = 398

 Score =  152 bits (383), Expect = 4e-37
 Identities = 82/167 (49%), Positives = 111/167 (66%), Gaps = 5/167 (2%)

Query: 118 NVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLAKAV 175
           +V++ SI GLE  K+ L E V++P+K P+ F    LL P KG+LL+GPPGTGKTMLAKA+
Sbjct: 80  DVEFGSIGGLETIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAI 139

Query: 176 ATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEGRS 235
           A E    F N+  S+++SKW GD++KLV  +F LA    PA IF+DE+++ + QR    +
Sbjct: 140 AKESGAVFINVRVSNLMSKWFGDAQKLVSAVFSLAYKLQPAIIFIDEVESFLGQRRS--T 197

Query: 236 EHEASRRLKTELLIQMDGLARTDEL-VFVLAATNLPWELDAAMLRRL 281
           +HEA   +KTE +   DG +      V VLAATN P ELD A+LRRL
Sbjct: 198 DHEAMANMKTEFMALWDGFSTDPHARVMVLAATNRPSELDEAILRRL 244


>At5g53540 26S proteasome regulatory particle chain RPT6-like
           protein
          Length = 403

 Score =  150 bits (379), Expect = 1e-36
 Identities = 83/167 (49%), Positives = 113/167 (66%), Gaps = 7/167 (4%)

Query: 118 NVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLAKAV 175
           +V++ SI GLE+ K+ L E V++P+K P+ F    LL P KG+LL+GPPGTGKTMLAKA+
Sbjct: 83  DVEFGSIGGLESIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAI 142

Query: 176 ATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEGRS 235
           A E    F N+  S+++SKW GD++KLV  +F LA    PA IF+DE+D+ + QR    +
Sbjct: 143 ARESEAVFINVKVSNLMSKWFGDAQKLVSAVFSLAYKLQPAIIFIDEVDSFLGQRRS--T 200

Query: 236 EHEASRRLKTELLIQMDGLARTDE--LVFVLAATNLPWELDAAMLRR 280
           ++EA   +KTE +   DG   TD+   V VLAATN P ELD A+LRR
Sbjct: 201 DNEAMSNMKTEFMALWDGFT-TDQNARVMVLAATNRPSELDEAILRR 246


>At5g03340 transitional endoplasmic reticulum ATPase
          Length = 810

 Score =  147 bits (372), Expect = 8e-36
 Identities = 75/175 (42%), Positives = 112/175 (63%), Gaps = 3/175 (1%)

Query: 107 SLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPG 165
           S  R+ +   PNV WE I GLEN KR L+E V  P+++P+ F    +SP KG+L +GPPG
Sbjct: 465 SALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPG 524

Query: 166 TGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDA 225
            GKT+LAKA+A EC   F ++    +++ W G+SE  V+ +F+ AR  AP  +F DE+D+
Sbjct: 525 CGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDS 584

Query: 226 IISQRGEGRSE-HEASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLR 279
           I +QRG    +   A+ R+  +LL +MDG+    + VF++ ATN P  +D+A+LR
Sbjct: 585 IATQRGNSAGDAGGAADRVLNQLLTEMDGM-NAKKTVFIIGATNRPDIIDSALLR 638



 Score =  117 bits (294), Expect = 8e-27
 Identities = 67/175 (38%), Positives = 107/175 (60%), Gaps = 4/175 (2%)

Query: 106 ESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPP 164
           E + R+       V ++ + G+      ++E V +P+++P+ F  + + P KGILL+GPP
Sbjct: 191 EPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPP 250

Query: 165 GTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEID 224
           G+GKT++A+AVA E    FF I+   I+SK  G+SE  ++  FE A  +AP+ IF+DEID
Sbjct: 251 GSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEID 310

Query: 225 AIISQRGEGRSEHEASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLR 279
           +I  +R   ++  E  RR+ ++LL  MDGL ++   V V+ ATN P  +D A+ R
Sbjct: 311 SIAPKR--EKTNGEVERRIVSQLLTLMDGL-KSRAHVIVMGATNRPNSIDPALRR 362


>At3g53230 CDC48 - like protein
          Length = 815

 Score =  146 bits (369), Expect = 2e-35
 Identities = 76/175 (43%), Positives = 111/175 (63%), Gaps = 3/175 (1%)

Query: 107 SLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPG 165
           S  R+ +   PNV WE I GLEN KR L+E V  P+++P+ F    +SP KG+L +GPPG
Sbjct: 466 SALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPG 525

Query: 166 TGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDA 225
            GKT+LAKA+A EC   F +I    +++ W G+SE  V+ +F+ AR  AP  +F DE+D+
Sbjct: 526 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDS 585

Query: 226 IISQRGEGRSE-HEASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLR 279
           I +QRG    +   A+ R+  +LL +MDG+    + VF++ ATN P  +D A+LR
Sbjct: 586 IATQRGNSVGDAGGAADRVLNQLLTEMDGM-NAKKTVFIIGATNRPDIIDPALLR 639



 Score =  118 bits (295), Expect = 6e-27
 Identities = 67/175 (38%), Positives = 107/175 (60%), Gaps = 4/175 (2%)

Query: 106 ESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPP 164
           E + R+       V ++ + G+      ++E V +P+++P+ F  + + P KGILL+GPP
Sbjct: 192 EPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPP 251

Query: 165 GTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEID 224
           G+GKT++A+AVA E    FF I+   I+SK  G+SE  ++  FE A  +AP+ IF+DEID
Sbjct: 252 GSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEID 311

Query: 225 AIISQRGEGRSEHEASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLR 279
           +I  +R   ++  E  RR+ ++LL  MDGL ++   V V+ ATN P  +D A+ R
Sbjct: 312 SIAPKR--EKTHGEVERRIVSQLLTLMDGL-KSRAHVIVMGATNRPNSIDPALRR 363


>At3g09840 putative transitional endoplasmic reticulum ATPase
          Length = 809

 Score =  145 bits (367), Expect = 3e-35
 Identities = 75/176 (42%), Positives = 111/176 (62%), Gaps = 4/176 (2%)

Query: 107 SLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPG 165
           S  R+ +   PNV W  I GLEN KR L+E V  P+++P+ F    +SP KG+L +GPPG
Sbjct: 465 SALRETVVEVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPG 524

Query: 166 TGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDA 225
            GKT+LAKA+A EC   F ++    +++ W G+SE  V+ +F+ AR  AP  +F DE+D+
Sbjct: 525 CGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDS 584

Query: 226 IISQR--GEGRSEHEASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLR 279
           I +QR  G G     A+ R+  +LL +MDG+    + VF++ ATN P  +D+A+LR
Sbjct: 585 IATQRGGGSGGDGGGAADRVLNQLLTEMDGM-NAKKTVFIIGATNRPDIIDSALLR 639



 Score =  118 bits (295), Expect = 6e-27
 Identities = 67/175 (38%), Positives = 108/175 (61%), Gaps = 4/175 (2%)

Query: 106 ESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPP 164
           E + R+      +V ++ + G+      ++E V +P+++P+ F  + + P KGILL+GPP
Sbjct: 191 EPVKREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPP 250

Query: 165 GTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEID 224
           G+GKT++A+AVA E    FF I+   I+SK  G+SE  ++  FE A  +AP+ IF+DEID
Sbjct: 251 GSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEID 310

Query: 225 AIISQRGEGRSEHEASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLR 279
           +I  +R   ++  E  RR+ ++LL  MDGL ++   V V+ ATN P  +D A+ R
Sbjct: 311 SIAPKR--EKTNGEVERRIVSQLLTLMDGL-KSRAHVIVMGATNRPNSIDPALRR 362


>At1g03000 putative peroxisome assembly factor-2
          Length = 941

 Score =  135 bits (341), Expect = 3e-32
 Identities = 64/163 (39%), Positives = 104/163 (63%)

Query: 117 PNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVA 176
           PNVKW+ + GLE+ K  + + V +P+ +   F+  L    G+LL+GPPGTGKT+LAKAVA
Sbjct: 653 PNVKWDDVGGLEDVKTSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVA 712

Query: 177 TECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEGRSE 236
           TEC+  F ++    +++ + G+SEK V+ +FE AR   P  IF DE+D++   RG     
Sbjct: 713 TECSLNFLSVKGPELINMYIGESEKNVRDIFEKARSARPCVIFFDELDSLAPARGASGDS 772

Query: 237 HEASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLR 279
                R+ +++L ++DGL+ + + +F++ A+N P  +D A+LR
Sbjct: 773 GGVMDRVVSQMLAEIDGLSDSSQDLFIIGASNRPDLIDPALLR 815



 Score = 33.9 bits (76), Expect = 0.16
 Identities = 18/67 (26%), Positives = 29/67 (42%)

Query: 158 ILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPAT 217
           +LL G PG GK  + K VA          S  S+++     +   +   F +AR ++P  
Sbjct: 380 VLLHGIPGCGKRTVVKYVARRLGLHVVEFSCHSLLASSERKTSTALAQTFNMARRYSPTI 439

Query: 218 IFLDEID 224
           + L   D
Sbjct: 440 LLLRHFD 446


>At3g56690 calmodulin-binding protein
          Length = 1022

 Score =  134 bits (338), Expect = 7e-32
 Identities = 77/185 (41%), Positives = 112/185 (59%), Gaps = 3/185 (1%)

Query: 96  FESAEMRTLAESLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSP 154
           FE+A+ + +  S  R++I   P V WE + G    K  L EAV  P K+   F  +   P
Sbjct: 699 FENAKTK-IRPSAMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRP 757

Query: 155 WKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHA 214
             GIL+FGPPG  KT++A+AVA+E    F  +    + SKW G+SEK V+ LF  AR +A
Sbjct: 758 PSGILMFGPPGCSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANA 817

Query: 215 PATIFLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGLARTDELVFVLAATNLPWELD 274
           P+ IF DEID++ S RG+       S R+ ++LL+++DGL +    V V+AATN P ++D
Sbjct: 818 PSIIFFDEIDSLASIRGKENDGVSVSDRVMSQLLVELDGLHQRVG-VTVIAATNRPDKID 876

Query: 275 AAMLR 279
           +A+LR
Sbjct: 877 SALLR 881



 Score =  105 bits (261), Expect = 6e-23
 Identities = 56/128 (43%), Positives = 82/128 (63%), Gaps = 3/128 (2%)

Query: 152 LSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELAR 211
           L P KG+L+ GPPGTGKT LA+  A      FF+++   I+S++ G+SEK +  +F  A 
Sbjct: 415 LRPTKGVLIHGPPGTGKTSLARTFARHSGVNFFSVNGPEIISQYLGESEKALDEVFRSAS 474

Query: 212 HHAPATIFLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGLARTDELVFVLAATNLPW 271
           +  PA +F+D++DAI   R EG    E S+R+   LL  MDG++RTD +V V+AATN P 
Sbjct: 475 NATPAVVFIDDLDAIAPARKEG--GEELSQRMVATLLNLMDGISRTDGVV-VIAATNRPD 531

Query: 272 ELDAAMLR 279
            ++ A+ R
Sbjct: 532 SIEPALRR 539


>At2g03670 putative AAA-type ATPase
          Length = 603

 Score =  129 bits (323), Expect = 4e-30
 Identities = 71/176 (40%), Positives = 110/176 (62%), Gaps = 4/176 (2%)

Query: 107 SLSRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPG 165
           S++R I    P V W+ + GL++ K+ L++AV  PIK+   F  + +SP +GILL GPPG
Sbjct: 271 SINRGITVEIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPG 330

Query: 166 TGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDA 225
             KT LAKA A     +FF++S + + S + G+ E L++  F+ AR  +P+ IF DE D 
Sbjct: 331 CSKTTLAKAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEADV 390

Query: 226 IISQRGEGRSEHEAS--RRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLR 279
           +  +RG+  S + ++   RL + LL +MDGL    + + VLAATN P+ +DAA++R
Sbjct: 391 VACKRGDESSSNSSTVGERLLSTLLTEMDGLEEA-KGILVLAATNRPYAIDAALMR 445



 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 67/184 (36%), Positives = 96/184 (51%), Gaps = 15/184 (8%)

Query: 106 ESLSRDIIRGSPNVKWES---IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLF 161
           ES   D I G  N KW +   I G E A + L+E ++ P +YP     L   W +G+LL+
Sbjct: 5   ESSVCDNIAG--NEKWRAEAEIGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLLY 62

Query: 162 GPPGTGKTMLAKAVATECNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHA----PAT 217
           GPPGTGKT L +AV  EC+     +S  S+     G+SEK+++  F  A  HA    P+ 
Sbjct: 63  GPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSDKPSV 122

Query: 218 IFLDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGLARTDEL--VFVLAATNLPWELDA 275
           IF+DEID +  +R   R   E   R+ ++L   MD    +     V V+A+TN    +D 
Sbjct: 123 IFIDEIDVLCPRRDARR---EQDVRIASQLFTLMDSNKPSSSAPRVVVVASTNRVDAIDP 179

Query: 276 AMLR 279
           A+ R
Sbjct: 180 ALRR 183


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.321    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,043,916
Number of Sequences: 26719
Number of extensions: 380661
Number of successful extensions: 1493
Number of sequences better than 10.0: 151
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1217
Number of HSP's gapped (non-prelim): 178
length of query: 394
length of database: 11,318,596
effective HSP length: 101
effective length of query: 293
effective length of database: 8,619,977
effective search space: 2525653261
effective search space used: 2525653261
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)