BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146650.9 - phase: 0 /pseudo
         (314 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g17360 phosphoribosylglycinamide formyltransferase-like protein    291  3e-79
At1g52160 unknown protein                                              29  3.8
At1g42710 unknown protein                                              29  3.8
At5g10130 pollen allergen -like protein                                28  4.9
At1g58390 disease resistance protein PRM1                              28  8.4

>At4g17360 phosphoribosylglycinamide formyltransferase-like protein
          Length = 328

 Score =  291 bits (745), Expect = 3e-79
 Identities = 146/218 (66%), Positives = 170/218 (77%), Gaps = 7/218 (3%)

Query: 4   VVRRVSQV--LGLTNSNKIRNFSFKSLD-----LPPLPSPSLSHGIHVFHCPDAVGIVAK 56
           ++RRVS    L  T       +SFKS       L    SP L  G HVFHCPD VGIVAK
Sbjct: 1   MIRRVSTTSCLSATAFRSFTKWSFKSSQFHGESLDSSVSPLLIPGFHVFHCPDVVGIVAK 60

Query: 57  LSECIASRGGNILAADVFVPQNKHVFYSRSDFVFDPVKWPRKQMEEDFLKLSQAFNATRS 116
           LS+CIA++GGNIL  DV VP+NK+VFYSRS+F+FDPVKWPR+QM+EDF  ++Q F+A  S
Sbjct: 61  LSDCIAAKGGNILGYDVLVPENKNVFYSRSEFIFDPVKWPRRQMDEDFQTIAQKFSALSS 120

Query: 117 VVRVPALDPKYKIAVLASKQDHCLVDLLHGWQDGKLPVDITCVISNHHRDSNTHVIRFLE 176
           VVRVP+LDPKYKIA+L SKQDHCLV++LH WQDGKLPVDITCVISNH R  NTHV+RFL+
Sbjct: 121 VVRVPSLDPKYKIALLLSKQDHCLVEMLHKWQDGKLPVDITCVISNHERAPNTHVMRFLQ 180

Query: 177 RHGIPYHCLSTTNENKREGEILELVQNTDFLVLARYMQ 214
           RHGI YH L TT++NK E EILELV+ TDFLVLARYMQ
Sbjct: 181 RHGISYHYLPTTDQNKIEEEILELVKGTDFLVLARYMQ 218


>At1g52160 unknown protein
          Length = 890

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 44  VFHCPDAVGIVAKLSECIASRGGNIL 69
           V HCP A G+V K +E + S G  IL
Sbjct: 728 VVHCPQAYGVVIKAAERVNSVGEQIL 753


>At1g42710 unknown protein
          Length = 206

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 163 HHRDSNTHV--IRFLERHGIPYHCLSTTNENKREGEILELVQNT 204
           +H   NT +   R+L R GI +H    + E+  +G  LELV+ T
Sbjct: 69  YHIPLNTSIDASRYLLRQGIAFHGHDESEESANKGNFLELVKYT 112


>At5g10130 pollen allergen -like protein
          Length = 164

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/29 (48%), Positives = 18/29 (61%), Gaps = 1/29 (3%)

Query: 118 VRVPALDPKYKIAVLASKQD-HCLVDLLH 145
           V V   D KYK+AV   +QD  CL +L+H
Sbjct: 73  VAVTGPDGKYKVAVRGDRQDQQCLAELVH 101


>At1g58390 disease resistance protein PRM1
          Length = 907

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 19/58 (32%), Positives = 29/58 (49%), Gaps = 1/58 (1%)

Query: 9   SQVLGLTNSNKIRNFSFKSLDLPPLPSPSLSHGIHVFHCPDAVGI-VAKLSECIASRG 65
           S ++G T+SN    +   S+    LPS      +++ H P+   I V KLS C A+ G
Sbjct: 392 SDIVGRTSSNNSSIYHVLSMSFEELPSYLKHCFLYLAHFPEDHKINVEKLSYCWAAEG 449


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.333    0.144    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,654,739
Number of Sequences: 26719
Number of extensions: 262443
Number of successful extensions: 1021
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1017
Number of HSP's gapped (non-prelim): 6
length of query: 314
length of database: 11,318,596
effective HSP length: 99
effective length of query: 215
effective length of database: 8,673,415
effective search space: 1864784225
effective search space used: 1864784225
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 60 (27.7 bits)