BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146632.4 - phase: 0 
         (1038 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g59265 polyprotein, putative                                       815  0.0
At1g58889 polyprotein, putative                                       813  0.0
At4g02960 putative polyprotein of LTR transposon                      798  0.0
At4g10690 retrotransposon like protein                                784  0.0
At1g31210 putative reverse transcriptase                              783  0.0
At1g44510 polyprotein, putative                                       782  0.0
At4g16870 retrotransposon like protein                                772  0.0
At1g53810                                                             768  0.0
At4g27210 putative protein                                            717  0.0
At2g16000 putative retroelement pol polyprotein                       652  0.0
At1g70010 hypothetical protein                                        642  0.0
At2g16670 putative retroelement pol polyprotein                       608  e-174
At4g17450 retrotransposon like protein                                580  e-165
At4g14460 retrovirus-related like polyprotein                         579  e-165
At1g26990 polyprotein, putative                                       546  e-155
At3g45520 copia-like polyprotein                                      512  e-145
At2g13930 putative retroelement pol polyprotein                       511  e-145
At2g07550 putative retroelement pol polyprotein                       510  e-144
At2g14930 pseudogene                                                  509  e-144
At4g27200 putative protein                                            501  e-142

>At1g59265 polyprotein, putative
          Length = 1466

 Score =  815 bits (2104), Expect = 0.0
 Identities = 459/1130 (40%), Positives = 632/1130 (55%), Gaps = 101/1130 (8%)

Query: 1    MTSEQGNLSSYFNLSNNRGIIVGNGHSIPIRGYSHTNLSFPNPPLTLKNVLHSPQLIKNL 60
            +TS+  NLS +   +    ++V +G +IPI     T+LS  + PL L N+L+ P + KNL
Sbjct: 341  ITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNL 400

Query: 61   VSVRKFTTDNSVSVEFDPFGFSVKDFQTGMRLMRCESRGDLY--PITTSQAIS--PSTFA 116
            +SV +    N VSVEF P  F VKD  TG+ L++ +++ +LY  PI +SQ +S   S  +
Sbjct: 401  ISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSS 460

Query: 117  ALAPSLWHARLGHPGAPVVDSLRKNKFIECNRASGSHI-CHSCSLGKHIKLPFVSSNSCT 175
                S WHARLGHP   +++S+  N  +     S   + C  C + K  K+PF  S   +
Sbjct: 461  KATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINS 520

Query: 176  IMPFDIIHSDIWTSPVLSSSGHRYYVLFVDDYSNFLWTFPLSKKSQVFSIFLSFRTFIRT 235
              P + I+SD+W+SP+LS   +RYYV+FVD ++ + W +PL +KSQV   F++F+  +  
Sbjct: 521  TRPLEYIYSDVWSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLEN 580

Query: 236  QFEREVKNIQCDNGKEFDNRHFWEFCKENGVAFRLSCPHTSSQNGKAERKIRTINNIIRT 295
            +F+  +     DNG EF     WE+  ++G++   S PHT   NG +ERK R I     T
Sbjct: 581  RFQTRIGTFYSDNGGEFVA--LWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLT 638

Query: 296  LLVHASLPPSFWHHALQMATYLINILPNKQLAYQSPLKILYQKEPSYSHLRVFGCLCYPL 355
            LL HAS+P ++W +A  +A YLIN LP   L  +SP + L+   P+Y  LRVFGC CYP 
Sbjct: 639  LLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPW 698

Query: 356  FPSTTINKLQARSTPCVFLGYPSNHRSYKCYDLSSRKIIISRHVIFDETQFPFAKL---- 411
                  +KL  +S  CVFLGY     +Y C  L + ++ ISRHV FDE  FPF+      
Sbjct: 699  LRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFSNYLATL 758

Query: 412  ----------------HNPQPYTYGFMDDGPSPYVIHHL--------------------- 434
                            H   P T   +   PS    HH                      
Sbjct: 759  SPVQEQRRESSCVWSPHTTLP-TRTPVLPAPSCSDPHHAATPPSSPSAPFRNSQVSSSNL 817

Query: 435  -----TSQPSLGQPAQHDLPNTQPTTQPTTPEEQHAHSPPSSSPN--------------- 474
                 +S PS  +P        QPTTQPT  + Q  HS  ++S N               
Sbjct: 818  DSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQ-THSSQNTSQNNPTNESPSQLAQSLS 876

Query: 475  -PSPSTTATPSP-------PYQPTPISV----PKPV------------------TRSQHG 504
             P+ S++++PSP          PTP S+    P P+                  TR++ G
Sbjct: 877  TPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNNQAPLNTHSMGTRAKAG 936

Query: 505  IFKPKRQLNLNTSVPRSPLPRNPVSALRDPNWKMAMDDEFNALIKNKTWELVPRPPD-VN 563
            I KP  + +L  S+     PR  + AL+D  W+ AM  E NA I N TW+LVP PP  V 
Sbjct: 937  IIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVT 996

Query: 564  VIRSMWIFTHKEKSDGVFERYKARLVGDGKTQQVGVDCGETFSPVVKPATIRTVLSLALS 623
            ++   WIFT K  SDG   RYKARLV  G  Q+ G+D  ETFSPV+K  +IR VL +A+ 
Sbjct: 997  IVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVD 1056

Query: 624  KAWSIHQLDVKNAFLHGELKETVYMHQPMGFRDPNLPNHVCLLKKSLYGLKQAPRAWYKR 683
            ++W I QLDV NAFL G L + VYM QP GF D + PN+VC L+K+LYGLKQAPRAWY  
Sbjct: 1057 RSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVE 1116

Query: 684  FADYVSTIGFSHSTSDHSLFIYRKGTAMAYILLYVDDIILTASSDALRVTIISLLSTEFA 743
              +Y+ TIGF +S SD SLF+ ++G ++ Y+L+YVDDI++T +   L    +  LS  F+
Sbjct: 1117 LRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFS 1176

Query: 744  MKDLGSLHYFLGIAVTHHTGGLFLSQRKYAAEIIERAGMAACKSSSTPVDTKPKLSANSS 803
            +KD   LHYFLGI       GL LSQR+Y  +++ R  M   K  +TP+   PKLS  S 
Sbjct: 1177 VKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSG 1236

Query: 804  APHADPSHYRSLAGALQYLTFTRPDIAYAVQQVCLFMHDPREEHMHALKRIVRYIQGTLD 863
                DP+ YR + G+LQYL FTRPDI+YAV ++  FMH P EEH+ ALKRI+RY+ GT +
Sbjct: 1237 TKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPN 1296

Query: 864  HGLHLYPSSTSTLISYTDADWGGCPDTRRSTSGYCVFLGDNLISWSAKRQATLSRSSAEA 923
            HG+ L   +T +L +Y+DADW G  D   ST+GY V+LG + ISWS+K+Q  + RSS EA
Sbjct: 1297 HGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEA 1356

Query: 924  EYRGVANVVSESCWLRNLLLELHCPIRKASLVYCDNVSAIYLSGNPVQHQRTKHIEMDIH 983
            EYR VAN  SE  W+ +LL EL   + +  ++YCDNV A YL  NPV H R KHI +D H
Sbjct: 1357 EYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYH 1416

Query: 984  SVREKVARGEVRVLHVPSRYQIADIFTKGLPLVLFEDFRNNLSVRQPPVS 1033
             +R +V  G +RV+HV +  Q+AD  TK L    F++F + + V + P S
Sbjct: 1417 FIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRVPPS 1466


>At1g58889 polyprotein, putative
          Length = 1466

 Score =  813 bits (2100), Expect = 0.0
 Identities = 458/1130 (40%), Positives = 631/1130 (55%), Gaps = 101/1130 (8%)

Query: 1    MTSEQGNLSSYFNLSNNRGIIVGNGHSIPIRGYSHTNLSFPNPPLTLKNVLHSPQLIKNL 60
            +TS+  NLS +   +    ++V +G +IPI     T+LS  + PL L N+L+ P + KNL
Sbjct: 341  ITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNL 400

Query: 61   VSVRKFTTDNSVSVEFDPFGFSVKDFQTGMRLMRCESRGDLY--PITTSQAIS--PSTFA 116
            +SV +    N VSVEF P  F VKD  TG+ L++ +++ +LY  PI +SQ +S   S  +
Sbjct: 401  ISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSS 460

Query: 117  ALAPSLWHARLGHPGAPVVDSLRKNKFIECNRASGSHI-CHSCSLGKHIKLPFVSSNSCT 175
                S WHARLGHP   +++S+  N  +     S   + C  C + K  K+PF  S   +
Sbjct: 461  KATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINS 520

Query: 176  IMPFDIIHSDIWTSPVLSSSGHRYYVLFVDDYSNFLWTFPLSKKSQVFSIFLSFRTFIRT 235
              P + I+SD+W+SP+LS   +RYYV+FVD ++ + W +PL +KSQV   F++F+  +  
Sbjct: 521  TRPLEYIYSDVWSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLEN 580

Query: 236  QFEREVKNIQCDNGKEFDNRHFWEFCKENGVAFRLSCPHTSSQNGKAERKIRTINNIIRT 295
            +F+  +     DNG EF     WE+  ++G++   S PHT   NG +ERK R I     T
Sbjct: 581  RFQTRIGTFYSDNGGEFVA--LWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLT 638

Query: 296  LLVHASLPPSFWHHALQMATYLINILPNKQLAYQSPLKILYQKEPSYSHLRVFGCLCYPL 355
            LL HAS+P ++W +A  +A YLIN LP   L  +SP + L+   P+Y  LRVFGC CYP 
Sbjct: 639  LLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPW 698

Query: 356  FPSTTINKLQARSTPCVFLGYPSNHRSYKCYDLSSRKIIISRHVIFDETQFPFAKL---- 411
                  +KL  +S  CVFLGY     +Y C  L + ++ ISRHV FDE  FPF+      
Sbjct: 699  LRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFSNYLATL 758

Query: 412  ----------------HNPQPYTYGFMDDGPSPYVIHHL--------------------- 434
                            H   P T   +   PS    HH                      
Sbjct: 759  SPVQEQRRESSCVWSPHTTLP-TRTPVLPAPSCSDPHHAATPPSSPSAPFRNSQVSSSNL 817

Query: 435  -----TSQPSLGQPAQHDLPNTQPTTQPTTPEEQHAHSPPSSSPN--------------- 474
                 +S PS  +P        QPTTQPT  + Q  HS  ++S N               
Sbjct: 818  DSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQ-THSSQNTSQNNPTNESPSQLAQSLS 876

Query: 475  -PSPSTTATPSP-------PYQPTPISV----PKPV------------------TRSQHG 504
             P+ S++++PSP          PTP S+    P P+                  TR++ G
Sbjct: 877  TPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNNQAPLNTHSMGTRAKAG 936

Query: 505  IFKPKRQLNLNTSVPRSPLPRNPVSALRDPNWKMAMDDEFNALIKNKTWELVPRPPD-VN 563
            I KP  + +L  S+     PR  + AL+D  W+ AM  E NA I N TW+LVP PP  V 
Sbjct: 937  IIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVT 996

Query: 564  VIRSMWIFTHKEKSDGVFERYKARLVGDGKTQQVGVDCGETFSPVVKPATIRTVLSLALS 623
            ++   WIFT K  SDG   RYKAR V  G  Q+ G+D  ETFSPV+K  +IR VL +A+ 
Sbjct: 997  IVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVD 1056

Query: 624  KAWSIHQLDVKNAFLHGELKETVYMHQPMGFRDPNLPNHVCLLKKSLYGLKQAPRAWYKR 683
            ++W I QLDV NAFL G L + VYM QP GF D + PN+VC L+K+LYGLKQAPRAWY  
Sbjct: 1057 RSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVE 1116

Query: 684  FADYVSTIGFSHSTSDHSLFIYRKGTAMAYILLYVDDIILTASSDALRVTIISLLSTEFA 743
              +Y+ TIGF +S SD SLF+ ++G ++ Y+L+YVDDI++T +   L    +  LS  F+
Sbjct: 1117 LRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFS 1176

Query: 744  MKDLGSLHYFLGIAVTHHTGGLFLSQRKYAAEIIERAGMAACKSSSTPVDTKPKLSANSS 803
            +KD   LHYFLGI       GL LSQR+Y  +++ R  M   K  +TP+   PKLS  S 
Sbjct: 1177 VKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSG 1236

Query: 804  APHADPSHYRSLAGALQYLTFTRPDIAYAVQQVCLFMHDPREEHMHALKRIVRYIQGTLD 863
                DP+ YR + G+LQYL FTRPDI+YAV ++  FMH P EEH+ ALKRI+RY+ GT +
Sbjct: 1237 TKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPN 1296

Query: 864  HGLHLYPSSTSTLISYTDADWGGCPDTRRSTSGYCVFLGDNLISWSAKRQATLSRSSAEA 923
            HG+ L   +T +L +Y+DADW G  D   ST+GY V+LG + ISWS+K+Q  + RSS EA
Sbjct: 1297 HGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEA 1356

Query: 924  EYRGVANVVSESCWLRNLLLELHCPIRKASLVYCDNVSAIYLSGNPVQHQRTKHIEMDIH 983
            EYR VAN  SE  W+ +LL EL   + +  ++YCDNV A YL  NPV H R KHI +D H
Sbjct: 1357 EYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYH 1416

Query: 984  SVREKVARGEVRVLHVPSRYQIADIFTKGLPLVLFEDFRNNLSVRQPPVS 1033
             +R +V  G +RV+HV +  Q+AD  TK L    F++F + + V + P S
Sbjct: 1417 FIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRVPPS 1466


>At4g02960 putative polyprotein of LTR transposon
          Length = 1456

 Score =  798 bits (2062), Expect = 0.0
 Identities = 439/1136 (38%), Positives = 633/1136 (55%), Gaps = 101/1136 (8%)

Query: 1    MTSEQGNLSSYFNLSNNRGIIVGNGHSIPIRGYSHTNLSFPNPPLTLKNVLHSPQLIKNL 60
            +TS+  NLS +   +    +++ +G +IPI      +L   +  L L  VL+ P + KNL
Sbjct: 320  ITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNIHKNL 379

Query: 61   VSVRKFTTDNSVSVEFDPFGFSVKDFQTGMRLMRCESRGDLY--PITTSQAIS--PSTFA 116
            +SV +    N VSVEF P  F VKD  TG+ L++ +++ +LY  PI +SQA+S   S  +
Sbjct: 380  ISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCS 439

Query: 117  ALAPSLWHARLGHPGAPVVDSLRKNKFIECNRASGSHI-CHSCSLGKHIKLPFVSSNSCT 175
                S WH+RLGHP   +++S+  N  +     S   + C  C + K  K+PF +S   +
Sbjct: 440  KATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITS 499

Query: 176  IMPFDIIHSDIWTSPVLSSSGHRYYVLFVDDYSNFLWTFPLSKKSQVFSIFLSFRTFIRT 235
              P + I+SD+W+SP+LS   +RYYV+FVD ++ + W +PL +KSQV   F+ F++ +  
Sbjct: 500  SKPLEYIYSDVWSSPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVEN 559

Query: 236  QFEREVKNIQCDNGKEFDNRHFWEFCKENGVAFRLSCPHTSSQNGKAERKIRTINNIIRT 295
            +F+  +  +  DNG EF      ++  ++G++   S PHT   NG +ERK R I  +  T
Sbjct: 560  RFQTRIGTLYSDNGGEFVVLR--DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLT 617

Query: 296  LLVHASLPPSFWHHALQMATYLINILPNKQLAYQSPLKILYQKEPSYSHLRVFGCLCYPL 355
            LL HAS+P ++W +A  +A YLIN LP   L  QSP + L+ + P+Y  L+VFGC CYP 
Sbjct: 618  LLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPW 677

Query: 356  FPSTTINKLQARSTPCVFLGYPSNHRSYKCYDLSSRKIIISRHVIFDETQFPFAK----- 410
                  +KL+ +S  C F+GY     +Y C  + + ++  SRHV FDE  FPF+      
Sbjct: 678  LRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGV 737

Query: 411  ------------------------LHNPQPYTYGFMDD-------GPSPYVIHHLTSQ-- 437
                                    L  P P   G   D        PSP     ++S   
Sbjct: 738  STSQEQRSDSAPNWPSHTTLPTTPLVLPAPPCLGPHLDTSPRPPSSPSPLCTTQVSSSNL 797

Query: 438  -------PSLGQPAQHDLPNTQPTTQPTTPEEQHAHSPPSSSPNP--------------- 475
                   PS  +P        QPT QP   +  +++SP  ++PNP               
Sbjct: 798  PSSSISSPSSSEPTAPSHNGPQPTAQPHQTQNSNSNSPILNNPNPNSPSPNSPNQNSPLP 857

Query: 476  --------------------SPSTTATPSPPYQPT-------------PISVPKPVTRSQ 502
                                SPS+++T +PP  P              P++     TR++
Sbjct: 858  QSPISSPHIPTPSTSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAK 917

Query: 503  HGIFKPKRQLNLNTSVPRSPLPRNPVSALRDPNWKMAMDDEFNALIKNKTWELVPRPP-D 561
             GI KP ++ +  TS+  +  PR  + A++D  W+ AM  E NA I N TW+LVP PP  
Sbjct: 918  DGIRKPNQKYSYATSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPS 977

Query: 562  VNVIRSMWIFTHKEKSDGVFERYKARLVGDGKTQQVGVDCGETFSPVVKPATIRTVLSLA 621
            V ++   WIFT K  SDG   RYKARLV  G  Q+ G+D  ETFSPV+K  +IR VL +A
Sbjct: 978  VTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVA 1037

Query: 622  LSKAWSIHQLDVKNAFLHGELKETVYMHQPMGFRDPNLPNHVCLLKKSLYGLKQAPRAWY 681
            + ++W I QLDV NAFL G L + VYM QP GF D + P++VC L+K++YGLKQAPRAWY
Sbjct: 1038 VDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWY 1097

Query: 682  KRFADYVSTIGFSHSTSDHSLFIYRKGTAMAYILLYVDDIILTASSDALRVTIISLLSTE 741
                 Y+ T+GF +S SD SLF+ ++G ++ Y+L+YVDDI++T +   L    +  LS  
Sbjct: 1098 VELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQR 1157

Query: 742  FAMKDLGSLHYFLGIAVTHHTGGLFLSQRKYAAEIIERAGMAACKSSSTPVDTKPKLSAN 801
            F++K+   LHYFLGI       GL LSQR+Y  +++ R  M   K  +TP+ T PKL+ +
Sbjct: 1158 FSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLH 1217

Query: 802  SSAPHADPSHYRSLAGALQYLTFTRPDIAYAVQQVCLFMHDPREEHMHALKRIVRYIQGT 861
            S     DP+ YR + G+LQYL FTRPD++YAV ++  +MH P ++H +ALKR++RY+ GT
Sbjct: 1218 SGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGT 1277

Query: 862  LDHGLHLYPSSTSTLISYTDADWGGCPDTRRSTSGYCVFLGDNLISWSAKRQATLSRSSA 921
             DHG+ L   +T +L +Y+DADW G  D   ST+GY V+LG + ISWS+K+Q  + RSS 
Sbjct: 1278 PDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSST 1337

Query: 922  EAEYRGVANVVSESCWLRNLLLELHCPIRKASLVYCDNVSAIYLSGNPVQHQRTKHIEMD 981
            EAEYR VAN  SE  W+ +LL EL   +    ++YCDNV A YL  NPV H R KHI +D
Sbjct: 1338 EAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALD 1397

Query: 982  IHSVREKVARGEVRVLHVPSRYQIADIFTKGLPLVLFEDFRNNLSVRQPPVSTAGV 1037
             H +R +V  G +RV+HV +  Q+AD  TK L  V F++F   + V + P S  GV
Sbjct: 1398 YHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIKVPPSCGGV 1453


>At4g10690 retrotransposon like protein
          Length = 1515

 Score =  784 bits (2025), Expect = 0.0
 Identities = 436/1104 (39%), Positives = 624/1104 (56%), Gaps = 71/1104 (6%)

Query: 1    MTSEQGNLSSYFNLSNNRGIIVGNGHSIPIRGYSHTNLSFPNPPLTLKNVLHSPQLIKNL 60
            +T+    L +    S +  +IVGNG  +PI       L+     L L++VL  P + K+L
Sbjct: 334  ITNTTDGLQNSQTYSGDDSVIVGNGDFLPITHIGTIPLNISQGTLPLEDVLVCPGITKSL 393

Query: 61   VSVRKFTTDNSVSVEFDPFGFSVKDFQTGMRLMRCESRGDLYPI--TTSQAISPSTFAAL 118
            +SV K T D   S  FD     +KD +T   L +      LY +     Q    +   + 
Sbjct: 394  LSVSKLTDDYPCSFTFDSDSVVIKDKRTQQLLTQGNKHKGLYVLKDVPFQTYYSTRQQSS 453

Query: 119  APSLWHARLGHPGAPVVDSLRKNKFIECNRASGSHICHSCSLGKHIKLPFVSSNSCTIMP 178
               +WH RLGHP   V+  L K K I  N+ S S++C +C +GK  +LPFV+S   +  P
Sbjct: 454  DDEVWHQRLGHPNKEVLQHLIKTKAIVVNKTS-SNMCEACQMGKVCRLPFVASEFVSSRP 512

Query: 179  FDIIHSDIW-TSPVLSSSGHRYYVLFVDDYSNFLWTFPLSKKSQVFSIFLSFRTFIRTQF 237
             + IH D+W  +PV S+ G +YYV+F+D+YS F W +PL  KS  FS+F+ F+  +  Q+
Sbjct: 513  LERIHCDLWGPAPVTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFFSVFVLFQQLVENQY 572

Query: 238  EREVKNIQCDNGKEFDNRHFWEFCKENGVAFRLSCPHTSSQNGKAERKIRTINNIIRTLL 297
            + ++   QCD G EF +  F       G+   +SCPHT  QNG AER+ R +  +  +L+
Sbjct: 573  QHKIAMFQCDGGGEFVSYKFVAHLASCGIKQLISCPHTPQQNGIAERRHRYLTELGLSLM 632

Query: 298  VHASLPPSFWHHALQMATYLINILPNKQLA-YQSPLKILYQKEPSYSHLRVFGCLCYPLF 356
             H+ +P   W  A   + +L N+LP+  L+  +SP ++L+   P Y+ LRVFG  CYP  
Sbjct: 633  FHSKVPHKLWVEAFFTSNFLSNLLPSSTLSDNKSPYEMLHGTPPVYTALRVFGSACYPYL 692

Query: 357  PSTTINKLQARSTPCVFLGYPSNHRSYKCYDLSSRKIIISRHVIFDETQFPFAKLHN--- 413
                 NK   +S  CVFLGY + ++ Y+C    + K+ I RHV+FDE +FP++ +++   
Sbjct: 693  RPYAKNKFDPKSLLCVFLGYNNKYKGYRCLHPPTGKVYICRHVLFDERKFPYSDIYSQFQ 752

Query: 414  ----------------------------------PQPYTYGFMDDGPSPYVIHHLTSQPS 439
                                              P       +  G +P +    T+ P 
Sbjct: 753  TISGSPLFTAWQKGFSSTALSRETPSTNVEDIIFPSATVSSSVPTGCAPNIAETATA-PD 811

Query: 440  LGQPAQHDL-----PNTQPTTQPTTPEEQHAHSPPSSSPNPSPSTTA-TPS--------- 484
            +   A HD+     P T  T+ PT PEE  +     S+ + +  ++A TP          
Sbjct: 812  VDVAAAHDMVVPPSPITS-TSLPTQPEESTSDQNHYSTDSETAISSAMTPQSINVSLFED 870

Query: 485  ---PPYQPT-------PISVPKPVTRSQHGIFKPKRQLNLNTSVPRSPLPRNPVSALRDP 534
               PP Q         P +    +TR++ GI KP  +  L +     P P++   AL+D 
Sbjct: 871  SDFPPLQSVISSTTAAPETSHPMITRAKSGITKPNPKYALFSVKSNYPEPKSVKEALKDE 930

Query: 535  NWKMAMDDEFNALIKNKTWELVPRPPDVNVIRSMWIFTHKEKSDGVFERYKARLVGDGKT 594
             W  AM +E   + +  TW+LVP      ++   W+F  K  SDG  +R KARLV  G  
Sbjct: 931  GWTNAMGEEMGTMHETDTWDLVPPEMVDRLLGCKWVFKTKLNSDGSLDRLKARLVARGYE 990

Query: 595  QQVGVDCGETFSPVVKPATIRTVLSLALSKAWSIHQLDVKNAFLHGELKETVYMHQPMGF 654
            Q+ GVD  ET+SPVV+ AT+R++L +A    WS+ QLDVKNAFLH ELKETV+M QP GF
Sbjct: 991  QEEGVDYVETYSPVVRSATVRSILHVATINKWSLKQLDVKNAFLHDELKETVFMTQPPGF 1050

Query: 655  RDPNLPNHVCLLKKSLYGLKQAPRAWYKRFADYVSTIGFSHSTSDHSLFIYRKGTAMAYI 714
             DP+ P++VC LKK++Y LKQAPRAW+ +F+ Y+   GF  S SD SLF+Y KG  + ++
Sbjct: 1051 EDPSRPDYVCKLKKAIYDLKQAPRAWFDKFSSYLLKYGFICSFSDPSLFVYLKGRDVMFL 1110

Query: 715  LLYVDDIILTASSDALRVTIISLLSTEFAMKDLGSLHYFLGIAVTHHTGGLFLSQRKYAA 774
            LLYVDD+ILT ++D L   ++++LSTEF MKD+G+LHYFLGI   +H  GLFLSQ KY +
Sbjct: 1111 LLYVDDMILTGNNDVLLQQLLNILSTEFRMKDMGALHYFLGIQAHYHNDGLFLSQEKYTS 1170

Query: 775  EIIERAGMAACKSSSTPVDTKPKLSANSSAPHADPSHYRSLAGALQYLTFTRPDIAYAVQ 834
            +++  AGM+ C S  TP+     L   ++ P  +P+++R LAG LQYLT TRPDI +AV 
Sbjct: 1171 DLLVNAGMSDCSSMPTPLQL--DLLQGNNKPFPEPTYFRRLAGKLQYLTLTRPDIQFAVN 1228

Query: 835  QVCLFMHDPREEHMHALKRIVRYIQGTLDHGLHLYPSSTSTLISYTDADWGGCPDTRRST 894
             VC  MH P     H LKRI+ Y++GT+  G++L  ++ S L  Y+D+DW GC DTRRST
Sbjct: 1229 FVCQKMHAPTMSDFHLLKRILHYLKGTMTMGINLSSNTDSVLRCYSDSDWAGCKDTRRST 1288

Query: 895  SGYCVFLGDNLISWSAKRQATLSRSSAEAEYRGVANVVSESCWLRNLLLELHCPIRKASL 954
             G+C FLG N+ISWSAKR  T+S+SS EAEYR ++   SE  W+  LL E+  P ++   
Sbjct: 1289 GGFCTFLGYNIISWSAKRHPTVSKSSTEAEYRTLSFAASEVSWIGFLLQEIGLPQQQIPE 1348

Query: 955  VYCDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARGEVRVLHVPSRYQIADIFTKGLP 1014
            +YCDN+SA+YLS NP  H R+KH ++D + VRE+VA G + V H+P+  Q+ADIFTK LP
Sbjct: 1349 MYCDNLSAVYLSANPALHSRSKHFQVDYYYVRERVALGALTVKHIPASQQLADIFTKSLP 1408

Query: 1015 LVLFEDFRNNLSVRQPPVSTAGVC 1038
               F D R  L V  PP ++   C
Sbjct: 1409 QAPFCDLRFKLGVVLPPDTSLRGC 1432


>At1g31210 putative reverse transcriptase
          Length = 1415

 Score =  783 bits (2021), Expect = 0.0
 Identities = 426/1044 (40%), Positives = 593/1044 (55%), Gaps = 23/1044 (2%)

Query: 1    MTSEQGNLSSYFNLSNNRGIIVGNGHSIPIRGYSHTNLSFPNPPLTLKNVLHSPQLIKNL 60
            +TS    L S      +  ++VG+G  +PI     T +   N  + L  VL  P + K+L
Sbjct: 332  VTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIKSSNGKIPLNEVLVVPNIQKSL 391

Query: 61   VSVRKFTTDNSVSVEFDPFGFSVKDFQTGMRLMRCESRGDLYPITTSQ--AISPSTFAAL 118
            +SV K   D    V FD     + D QT   +     R  LY +   +  A+  +   A 
Sbjct: 392  LSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGPRRNGLYVLENQEFVALYSNRQCAA 451

Query: 119  APSLWHARLGHPGAPVVDSLRKNKFIECNRASGSHICHSCSLGKHIKLPFVSSNSCTIMP 178
               +WH RLGH  +  +  L+ +K I+ N++  S +C  C +GK  +LPF+ S+S  + P
Sbjct: 452  TEEVWHHRLGHANSKALQHLQNSKAIQINKSRTSPVCEPCQMGKSSRLPFLISDSRVLHP 511

Query: 179  FDIIHSDIW-TSPVLSSSGHRYYVLFVDDYSNFLWTFPLSKKSQVFSIFLSFRTFIRTQF 237
             D IH D+W  SPV+S+ G +YY +FVDDYS + W +PL  KS+  S+F+SF+  +  Q 
Sbjct: 512  LDRIHCDLWGPSPVVSNQGLKYYAIFVDDYSRYSWFYPLHNKSEFLSVFISFQKLVENQL 571

Query: 238  EREVKNIQCDNGKEFDNRHFWEFCKENGVAFRLSCPHTSSQNGKAERKIRTINNIIRTLL 297
              ++K  Q D G EF +        E+G+  R+SCP+T  QNG AERK R +  +  ++L
Sbjct: 572  NTKIKVFQSDGGGEFVSNKLKTHLSEHGIHHRISCPYTPQQNGLAERKHRHLVELGLSML 631

Query: 298  VHASLPPSFWHHALQMATYLINILPNKQLAYQSPLKILYQKEPSYSHLRVFGCLCYPLFP 357
             H+  P  FW  +   A Y+IN LP+  L   SP + L+ ++P YS LRVFG  CYP   
Sbjct: 632  FHSHTPQKFWVESFFTANYIINRLPSSVLKNLSPYEALFGEKPDYSSLRVFGSACYPCLR 691

Query: 358  STTINKLQARSTPCVFLGYPSNHRSYKCYDLSSRKIIISRHVIFDETQFPFAKLHNP--- 414
                NK   RS  CVFLGY S ++ Y+C+   + K+ ISR+VIF+E++ PF + +     
Sbjct: 692  PLAQNKFDPRSLQCVFLGYNSQYKGYRCFYPPTGKVYISRNVIFNESELPFKEKYQSLVP 751

Query: 415  -------QPYTYGFMDDGPSPYVIHHLTSQPSLGQPAQHDLPNTQPTTQPTTPEEQHAHS 467
                   Q + +  + +   P     L S+P       +    +Q T Q T PE    + 
Sbjct: 752  QYSTPLLQAWQHNKISEISVPAAPVQLFSKPI----DLNTYAGSQVTEQLTDPEPTSNNE 807

Query: 468  PPSSSPNPSPSTTATPSPPYQPTPISVPKPVTRSQHGIFKPKRQLNLNTSVPRSPLPRNP 527
                  NP     A      Q   I+     TRS+ GI KP  +  L TS   +  P+  
Sbjct: 808  GSDEEVNPVAEEIAAN----QEQVINSHAMTTRSKAGIQKPNTRYALITSRMNTAEPKTL 863

Query: 528  VSALRDPNWKMAMDDEFNALIKNKTWELVPRPPDVNVIRSMWIFTHKEKSDGVFERYKAR 587
             SA++ P W  A+ +E N +    TW LVP   D+N++ S W+F  K   DG  ++ KAR
Sbjct: 864  ASAMKHPGWNEAVHEEINRVHMLHTWSLVPPTDDMNILSSKWVFKTKLHPDGSIDKLKAR 923

Query: 588  LVGDGKTQQVGVDCGETFSPVVKPATIRTVLSLALSKAWSIHQLDVKNAFLHGELKETVY 647
            LV  G  Q+ GVD  ETFSPVV+ ATIR VL ++ SK W I QLDV NAFLHGEL+E V+
Sbjct: 924  LVAKGFDQEEGVDYLETFSPVVRTATIRLVLDVSTSKGWPIKQLDVSNAFLHGELQEPVF 983

Query: 648  MHQPMGFRDPNLPNHVCLLKKSLYGLKQAPRAWYKRFADYVSTIGFSHSTSDHSLFIYRK 707
            M+QP GF DP  P HVC L K++YGLKQAPRAW+  F++++   GF  S SD SLF+  +
Sbjct: 984  MYQPSGFIDPQKPTHVCRLTKAIYGLKQAPRAWFDTFSNFLLDYGFVCSKSDPSLFVCHQ 1043

Query: 708  GTAMAYILLYVDDIILTASSDALRVTIISLLSTEFAMKDLGSLHYFLGIAVTHHTGGLFL 767
               + Y+LLYVDDI+LT S  +L   ++  L   F+MKDLG   YFLGI +  +  GLFL
Sbjct: 1044 DGKILYLLLYVDDILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFLGIQIEDYANGLFL 1103

Query: 768  SQRKYAAEIIERAGMAACKSSSTPVDTKPKLSANSSAPHADPSHYRSLAGALQYLTFTRP 827
             Q  YA +I+++AGM+ C    TP+    +L   +S   A+P+++RSLAG LQYLT TRP
Sbjct: 1104 HQTAYATDILQQAGMSDCNPMPTPL--PQQLDNLNSELFAEPTYFRSLAGKLQYLTITRP 1161

Query: 828  DIAYAVQQVCLFMHDPREEHMHALKRIVRYIQGTLDHGLHLYPSSTSTLISYTDADWGGC 887
            DI +AV  +C  MH P       LKRI+RYI+GT+  GL +  +ST TL +Y+D+D  GC
Sbjct: 1162 DIQFAVNFICQRMHSPTTSDFGLLKRILRYIKGTIGMGLPIKRNSTLTLSAYSDSDHAGC 1221

Query: 888  PDTRRSTSGYCVFLGDNLISWSAKRQATLSRSSAEAEYRGVANVVSESCWLRNLLLELHC 947
             +TRRST+G+C+ LG NLISWSAKRQ T+S SS EAEYR +     E  W+  LL +L  
Sbjct: 1222 KNTRRSTTGFCILLGSNLISWSAKRQPTVSNSSTEAEYRALTYAAREITWISFLLRDLGI 1281

Query: 948  PIRKASLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARGEVRVLHVPSRYQIAD 1007
            P    + VYCDN+SA+YLS NP  H R+KH + D H +RE+VA G +   H+ + +Q+AD
Sbjct: 1282 PQYLPTQVYCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLIETQHISATFQLAD 1341

Query: 1008 IFTKGLPLVLFEDFRNNLSVRQPP 1031
            +FTK LP   F D R+ L V   P
Sbjct: 1342 VFTKSLPRRAFVDLRSKLGVSGSP 1365


>At1g44510 polyprotein, putative
          Length = 1459

 Score =  782 bits (2019), Expect = 0.0
 Identities = 443/1118 (39%), Positives = 612/1118 (54%), Gaps = 90/1118 (8%)

Query: 1    MTSEQGNLSSYFNLSNNRGIIVGNGHSIPIRGYSHTNLSFPNPPLTLKNVLHSPQLIKNL 60
            +TS+   LS +   +    +++ +G  + I+    T L   N  L L  VL+ P + KNL
Sbjct: 347  ITSDLNALSLHQPYNGGEYVMIADGTGLTIKQTGSTFLPSQNRDLALHKVLYVPDIRKNL 406

Query: 61   VSVRKFTTDNSVSVEFDPFGFSVKDFQTGMRLMRCESRGDLY------PITTSQAISPST 114
            +SV +    N VSVEF P  F VKD  TG  L++  ++ DLY      P  T+   SPS 
Sbjct: 407  ISVYRLCNTNQVSVEFFPASFQVKDLNTGTLLLQGRTKDDLYEWPVTNPPATALFTSPSP 466

Query: 115  FAALAPSLWHARLGHPGAPVVDSLRKNKFIECNRASGSHI-CHSCSLGKHIKLPFVSSNS 173
               L  S WH+RLGHP A ++++L     +  + AS +   C  C + K  KLPF +S+ 
Sbjct: 467  KTTL--SSWHSRLGHPSASILNTLLSKFSLPVSVASSNKTSCSDCLINKSHKLPFATSSI 524

Query: 174  CTIMPFDIIHSDIWTSPVLSSSGHRYYVLFVDDYSNFLWTFPLSKKSQVFSIFLSFRTFI 233
             +  P + I +D+WTSP++S   ++YY++ VD Y+ + W +PL +KSQV + F++F+  +
Sbjct: 525  HSSSPLEYIFTDVWTSPIISHDNYKYYLVLVDHYTRYTWLYPLQQKSQVKATFIAFKALV 584

Query: 234  RTQFEREVKNIQCDNGKEFDNRHFWEFCKENGVAFRLSCPHTSSQNGKAERKIRTINNII 293
              +F+ +++ +  DNG EF      +F   NG++   S PHT   NG +ERK R I    
Sbjct: 585  ENRFQAKIRTLYSDNGGEFIALR--DFLVSNGISHLTSPPHTPEHNGLSERKHRHIVETG 642

Query: 294  RTLLVHASLPPSFWHHALQMATYLINILPNKQLAYQSPLKILYQKEPSYSHLRVFGCLCY 353
             TLL  AS+P  +W +A   A YLIN +P   L  QSP + L+   P+Y  LRVFGCLC+
Sbjct: 643  LTLLTQASVPREYWTYAFATAVYLINRMPTPVLCLQSPFQKLFGSSPNYQRLRVFGCLCF 702

Query: 354  PLFPSTTINKLQARSTPCVFLGYPSNHRSYKCYDLSSRKIIISRHVIFDETQFPFAKLHN 413
            P     T NKL+ RS  CVFLGY     +Y C D+ + ++  SRHV+FDE+ +PFA    
Sbjct: 703  PWLRPYTRNKLEERSKRCVFLGYSLTQTAYLCLDVDNNRLYTSRHVMFDESTYPFAASIR 762

Query: 414  PQ----------------PYTYGF-----------------------MDDGP-------S 427
             Q                P   GF                        +D P       S
Sbjct: 763  EQSQSSLVTPPESSSSSSPANSGFPCSVLRLQSPPASSPETPSPPQQQNDSPVSPRQTGS 822

Query: 428  PYVIHHLTSQPSLGQPAQHDLPNTQPTTQPTTPEEQHAHSPPSSS-----PNPSPST--- 479
            P   HH   + S   P+   + N++PT       E  A S P+S      PNP+P T   
Sbjct: 823  PTPSHHSQVRDSTLSPSP-SVSNSEPTAPHENGPEPEAQSNPNSPFIGPLPNPNPETNPS 881

Query: 480  -----------TATPSPPYQPT-----------PISVPKPVTRSQHGIFKPKRQLNLNTS 517
                       T T  PP Q T           P +  +  TRS++ I KPK + +L  +
Sbjct: 882  SSIEQRPVDKSTTTALPPNQTTIAATSNSRSQPPKNNHQMKTRSKNNITKPKTKTSLTVA 941

Query: 518  VPRSPL--PRNPVSALRDPNWKMAMDDEFNALIKNKTWELVPRPPDVNVIRSMWIFTHKE 575
            + +  L  P     AL+D  W+ AM DEF+A  +N TW+LVP  P  +++   W+F  K 
Sbjct: 942  LTQPHLSEPNTVTQALKDKKWRFAMSDEFDAQQRNHTWDLVPPNPTQHLVGCRWVFKLKY 1001

Query: 576  KSDGVFERYKARLVGDGKTQQVGVDCGETFSPVVKPATIRTVLSLALSKAWSIHQLDVKN 635
              +G+ ++YKARLV  G  QQ GVD  ETFSPV+K  TIR VL +A+ K W + QLDV N
Sbjct: 1002 LPNGLIDKYKARLVAKGFNQQYGVDYAETFSPVIKATTIRVVLDVAVKKNWPLKQLDVNN 1061

Query: 636  AFLHGELKETVYMHQPMGFRDPNLPNHVCLLKKSLYGLKQAPRAWYKRFADYVSTIGFSH 695
            AFL G L E VYM QP GF D + P+HVC L+K++YGLKQAPRAWY     ++  IGF +
Sbjct: 1062 AFLQGTLTEEVYMAQPPGFVDKDRPSHVCRLRKAIYGLKQAPRAWYMELKQHLLNIGFVN 1121

Query: 696  STSDHSLFIYRKGTAMAYILLYVDDIILTASSDALRVTIISLLSTEFAMKDLGSLHYFLG 755
            S +D SLFIY  GT + Y+L+YVDDII+T S       ++S L+  F++KD   LHYFLG
Sbjct: 1122 SLADTSLFIYSHGTTLLYLLVYVDDIIVTGSDHKSVSAVLSSLAERFSIKDPTDLHYFLG 1181

Query: 756  IAVTHHTGGLFLSQRKYAAEIIERAGMAACKSSSTPVDTKPKLSANSSAPHADPSHYRSL 815
            I  T    GL L QRKY  +++ +  M   K  +TP+ T PKL+ +      D S YRS+
Sbjct: 1182 IEATRTNTGLHLMQRKYMTDLLAKHNMLDAKPVATPLPTSPKLTLHGGTKLNDASEYRSV 1241

Query: 816  AGALQYLTFTRPDIAYAVQQVCLFMHDPREEHMHALKRIVRYIQGTLDHGLHLYPSSTST 875
             G+LQYL FTRPDIA+AV ++  FMH P  +H  A KR++RY+ GT  HG+ L  SS   
Sbjct: 1242 VGSLQYLAFTRPDIAFAVNRLSQFMHQPTSDHWQAAKRVLRYLAGTTTHGIFLNSSSPIH 1301

Query: 876  LISYTDADWGGCPDTRRSTSGYCVFLGDNLISWSAKRQATLSRSSAEAEYRGVANVVSES 935
            L +++DADW G      ST+ Y ++LG N ISWS+K+Q  +SRSS E+EYR VAN  SE 
Sbjct: 1302 LHAFSDADWAGDSADYVSTNAYVIYLGRNPISWSSKKQRGVSRSSTESEYRAVANAASEI 1361

Query: 936  CWLRNLLLELHCPIRKASLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARGEVR 995
             WL +LL ELH  +     ++CDN+ A Y+  NPV H R KHI +D H VR  +    +R
Sbjct: 1362 RWLCSLLTELHIRLPHGPTIFCDNIGATYICANPVFHSRMKHIALDYHFVRGMIQSRALR 1421

Query: 996  VLHVPSRYQIADIFTKGLPLVLFEDFRNNLSVRQPPVS 1033
            V HV +  Q+AD  TK L    F   R+ + VRQ P S
Sbjct: 1422 VSHVSTNDQLADALTKSLSRPHFLSARSKIGVRQLPPS 1459


>At4g16870 retrotransposon like protein
          Length = 1474

 Score =  772 bits (1993), Expect = 0.0
 Identities = 441/1121 (39%), Positives = 604/1121 (53%), Gaps = 106/1121 (9%)

Query: 16   NNRGIIVGNGHSIPIRGYSHTNLSFPNPPLTLKNVLHSPQLIKNLVSVRKFTTDNSVSVE 75
            N   +++ +G S+ I     T L      LTL  VL+ P + KNLVSV +    N VSVE
Sbjct: 357  NGDDVMIADGTSLKITKTGSTFLPSNARDLTLNKVLYVPDIQKNLVSVYRLCNTNQVSVE 416

Query: 76   FDPFGFSVKDFQTGMRLMRCESRGDLY--PITTSQAISPSTFAALAPSL--WHARLGHPG 131
            F P  F VKD  TG  L++  ++ +LY  P+T  +A +  T  +   +L  WH+RLGHP 
Sbjct: 417  FFPASFQVKDLNTGTLLLQGRTKDELYEWPVTNPKATALFTTPSPKTTLSSWHSRLGHPS 476

Query: 132  APVVDSLRKNKFIECN-RASGSHICHSCSLGKHIKLPFVSSNSCTIMPFDIIHSDIWTSP 190
            + ++++L     +  +  AS    C  C + K  KLPF  S+  +  P + I SD+W SP
Sbjct: 477  SSILNTLISKFSLPVSVSASNKLACSDCFINKSHKLPFSISSIKSTSPLEYIFSDVWMSP 536

Query: 191  VLSSSGHRYYVLFVDDYSNFLWTFPLSKKSQVFSIFLSFRTFIRTQFEREVKNIQCDNGK 250
            +LS   ++YY++ VD ++ + W +PL +KSQV S F++F+  +  +F+ +++ +  DNG 
Sbjct: 537  ILSPDNYKYYLVLVDHHTRYTWLYPLQQKSQVKSTFIAFKALVENRFQAKIRTLYSDNGG 596

Query: 251  EFDNRHFWEFCKENGVAFRLSCPHTSSQNGKAERKIRTINNIIRTLLVHASLPPSFWHHA 310
            EF      EF   NG++   S PHT   NG +ERK R I     TLL  AS+P  +W +A
Sbjct: 597  EFIALR--EFLVSNGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLTQASVPREYWPYA 654

Query: 311  LQMATYLINILPNKQLAYQSPLKILYQKEPSYSHLRVFGCLCYPLFPSTTINKLQARSTP 370
               A YLIN +P   L+ +SP + L+  +P+Y  LRVFGCLC+P     T NKL+ RS  
Sbjct: 655  FAAAVYLINRMPTPVLSMESPFQKLFGSKPNYERLRVFGCLCFPWLRPYTHNKLEERSRR 714

Query: 371  CVFLGYPSNHRSYKCYDLSSRKIIISRHVIFDETQFPFAKLHNPQPYTYGFMDDGPSPYV 430
            CVFLGY     +Y C+D+  +++  SRHV+FDE  FPF+ L +         +   SP V
Sbjct: 715  CVFLGYSLTQTAYLCFDVEHKRLYTSRHVVFDEASFPFSNLTSQNSLPTVTFEQSSSPLV 774

Query: 431  IHHLTSQ--------------------------PSLGQPAQHDLP--------------- 449
               L+S                           P   QP     P               
Sbjct: 775  TPILSSSSVLPSCLSSPCTVLHQQQPPVTTPNSPHSSQPTTSPAPLSPHRSTTMDFQVPQ 834

Query: 450  --------------NTQPTTQPTTPEEQHAHSPPS---SSPN------PSPSTTATPSPP 486
                          N++PT       E  A SPP    S+P       P P+    P+  
Sbjct: 835  VRSSSPLLSSSSSLNSEPTAPNENGPEPEAQSPPIGPLSNPTHEAFIGPLPNPNRNPTNE 894

Query: 487  YQPTPISVPKPV--------------------------------TRSQHGIFKPKRQLNL 514
             +PTP   PKPV                                TR+++ I KP  + +L
Sbjct: 895  IEPTPAPHPKPVKPTTTTTTPNRTTVSDASHQPTAPQQNQHNMKTRAKNNIKKPNTKFSL 954

Query: 515  NTSVP-RSPL-PRNPVSALRDPNWKMAMDDEFNALIKNKTWELVPRPPDVNVIRSMWIFT 572
              ++P RSP  P N   AL+D  W+ AM DEF+A  +N TW+LVP    + ++   W+F 
Sbjct: 955  TATLPNRSPSEPTNVTQALKDKKWRFAMSDEFDAQQRNHTWDLVPHESQL-LVGCKWVFK 1013

Query: 573  HKEKSDGVFERYKARLVGDGKTQQVGVDCGETFSPVVKPATIRTVLSLALSKAWSIHQLD 632
             K   +G  ++YKARLV  G  QQ GVD  ETFSPV+K  TIR VL +A+ K W I QLD
Sbjct: 1014 LKYLPNGAIDKYKARLVAKGFNQQYGVDYAETFSPVIKSTTIRLVLDVAVKKDWEIKQLD 1073

Query: 633  VKNAFLHGELKETVYMHQPMGFRDPNLPNHVCLLKKSLYGLKQAPRAWYKRFADYVSTIG 692
            V NAFL G L E VYM QP GF D + P HVC L+K++YGLKQAPRAWY     ++  IG
Sbjct: 1074 VNNAFLQGTLTEEVYMAQPPGFIDKDRPTHVCRLRKAIYGLKQAPRAWYMELKQHLFNIG 1133

Query: 693  FSHSTSDHSLFIYRKGTAMAYILLYVDDIILTASSDALRVTIISLLSTEFAMKDLGSLHY 752
            F +S SD SLFIY  GT   Y+L+YVDDII+T S  +    +++ L+  F++KD   LHY
Sbjct: 1134 FVNSLSDASLFIYCHGTTFVYVLVYVDDIIVTGSDKSSIDAVLTSLAERFSIKDPTDLHY 1193

Query: 753  FLGIAVTHHTGGLFLSQRKYAAEIIERAGMAACKSSSTPVDTKPKLSANSSAPHADPSHY 812
            FLGI  T    GL L QRKY  +++ +  MA  K   TP+ T PKL+ +      D S Y
Sbjct: 1194 FLGIEATRTKQGLHLMQRKYIKDLLAKHNMADAKPVLTPLPTSPKLTLHGGTKLNDASEY 1253

Query: 813  RSLAGALQYLTFTRPDIAYAVQQVCLFMHDPREEHMHALKRIVRYIQGTLDHGLHLYPSS 872
            RS+ G+LQYL FTRPDIAYAV ++   M  P E+H  A KR++RY+ GT  HG+ L  +S
Sbjct: 1254 RSVVGSLQYLAFTRPDIAYAVNRLSQLMPQPTEDHWQAAKRVLRYLAGTSTHGIFLDTTS 1313

Query: 873  TSTLISYTDADWGGCPDTRRSTSGYCVFLGDNLISWSAKRQATLSRSSAEAEYRGVANVV 932
               L +++DADW G  D   ST+ Y ++LG N ISWS+K+Q  ++RSS E+EYR VAN  
Sbjct: 1314 PLNLHAFSDADWAGDSDDYVSTNAYVIYLGKNPISWSSKKQRGVARSSTESEYRAVANAA 1373

Query: 933  SESCWLRNLLLELHCPIRKASLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARG 992
            SE  WL +LL +LH  +     ++CDN+ A YL  NPV H R KHI +D H VR  +  G
Sbjct: 1374 SEVKWLCSLLSKLHIRLPIRPSIFCDNIGATYLCANPVFHSRMKHIAIDYHFVRNMIQSG 1433

Query: 993  EVRVLHVPSRYQIADIFTKGLPLVLFEDFRNNLSVRQPPVS 1033
             +RV HV +R Q+AD  TK L    F+  R  + VRQ P S
Sbjct: 1434 ALRVSHVSTRDQLADALTKPLSRAHFQSARFKIGVRQLPPS 1474


>At1g53810 
          Length = 1522

 Score =  768 bits (1983), Expect = 0.0
 Identities = 428/1090 (39%), Positives = 608/1090 (55%), Gaps = 76/1090 (6%)

Query: 20   IIVGNGHSIPIRGYSHTNLSFPNPPLTLKNVLHSPQLIKNLVSVRKFTTDNSVSVEFDPF 79
            I+V +G+ +PI      +++  +  + LK VL  P ++K+L+SV K T+D   SVEFD  
Sbjct: 355  IMVADGNFLPITHTGSGSIASSSGKIPLKEVLVCPDIVKSLLSVSKLTSDYPCSVEFDAD 414

Query: 80   GFSVKDFQTGMRLMRCESRGDLYPITTS--QAISPSTFAALAPSLWHARLGHPGAPVVDS 137
               + D  T   L+   +R  LY +     Q +  +   + +  +WH RLGH  A V+  
Sbjct: 415  SVRINDKATKKLLVMGRNRDGLYSLEEPKLQVLYSTRQNSASSEVWHRRLGHANAEVLHQ 474

Query: 138  LRKNKFIECNRASGSHICHSCSLGKHIKLPFVSSNSCTIMPFDIIHSDIW-TSPVLSSSG 196
            L  +K I         +C +C LGK  +LPF+ S      P + IH D+W  SP  S  G
Sbjct: 475  LASSKSIIIINKVVKTVCEACHLGKSTRLPFMLSTFNASRPLERIHCDLWGPSPTSSVQG 534

Query: 197  HRYYVLFVDDYSNFLWTFPLSKKSQVFSIFLSFRTFIRTQFEREVKNIQCDNGKEFDNRH 256
             RYYV+F+D YS F W +PL  KS  FS F+ F+  +  Q   ++K  QCD G EF +  
Sbjct: 535  FRYYVVFIDHYSRFTWFYPLKLKSDFFSTFVMFQKLVENQLGHKIKIFQCDGGGEFISSQ 594

Query: 257  FWEFCKENGVAFRLSCPHTSSQNGKAERKIRTINNIIRTLLVHASLPPSFWHHALQMATY 316
            F +  +++G+   +SCP+T  QNG AERK R I  +  +++  + LP  +W  +   A +
Sbjct: 595  FLKHLQDHGIQQNMSCPYTPQQNGMAERKHRHIVELGLSMIFQSKLPLKYWLESFFTANF 654

Query: 317  LINILPNKQL-AYQSPLKILYQKEPSYSHLRVFGCLCYPLFPSTTINKLQARSTPCVFLG 375
            +IN+LP   L   +SP + LY K P YS LRVFGC CYP        K   RS  CVFLG
Sbjct: 655  VINLLPTSSLDNNESPYQKLYGKAPEYSALRVFGCACYPTLRDYASTKFDPRSLKCVFLG 714

Query: 376  YPSNHRSYKCYDLSSRKIIISRHVIFDETQFPFAKLH---NPQPYTYGFMDDGPSPYVIH 432
            Y   ++ Y+C    + +I ISRHV+FDE   PF  ++   +PQ  T        S    H
Sbjct: 715  YNEKYKGYRCLYPPTGRIYISRHVVFDENTHPFESIYSHLHPQDKTPLLEAWFKS---FH 771

Query: 433  HLT-SQP--------SLGQPAQHDL-------------PNTQPTTQPT---------TPE 461
            H+T +QP        S+ QP   DL             PN    T            +PE
Sbjct: 772  HVTPTQPDQSRYPVSSIPQPETTDLSAAPASVAAETAGPNASDDTSQDNETISVVSGSPE 831

Query: 462  E----------QHAHSPPSSSPNPSPSTTATPSPPYQPTPISVPKP-------------V 498
                          HSP + S +PSP+ ++  S P Q +PI +                V
Sbjct: 832  RTTGLDSASIGDSYHSPTADSSHPSPARSSPASSP-QGSPIQMAPAQQVQAPVTNEHAMV 890

Query: 499  TRSQHGIFKPKRQLNLNTSVPRSPLPRNPVSALRDPNWKMAMDDEFNALIKNKTWELVPR 558
            TR + GI KP ++  L T     P P+    AL+ P W  AM +E     + +TW LVP 
Sbjct: 891  TRGKEGISKPNKRYVLLTHKVSIPEPKTVTEALKHPGWNNAMQEEMGNCKETETWTLVPY 950

Query: 559  PPDVNVIRSMWIFTHKEKSDGVFERYKARLVGDGKTQQVGVDCGETFSPVVKPATIRTVL 618
             P++NV+ SMW+F  K  +DG  ++ KARLV  G  Q+ G+D  ET+SPVV+  T+R +L
Sbjct: 951  SPNMNVLGSMWVFRTKLHADGSLDKLKARLVAKGFKQEEGIDYLETYSPVVRTPTVRLIL 1010

Query: 619  SLALSKAWSIHQLDVKNAFLHGELKETVYMHQPMGFRDPNLPNHVCLLKKSLYGLKQAPR 678
             +A    W + Q+DVKNAFLHG+L ETVYM QP GF D + P+HVCLL KSLYGLKQ+PR
Sbjct: 1011 HVATVLKWELKQMDVKNAFLHGDLTETVYMRQPAGFVDKSKPDHVCLLHKSLYGLKQSPR 1070

Query: 679  AWYKRFADYVSTIGFSHSTSDHSLFIYRKGTAMAYILLYVDDIILTASSDALRVTIISLL 738
            AW+ RF++++   GF  S  D SLF+Y     +  +LLYVDD+++T ++      +++ L
Sbjct: 1071 AWFDRFSNFLLEFGFICSLFDPSLFVYSSNNDVILLLLYVDDMVITGNNSQSLTHLLAAL 1130

Query: 739  STEFAMKDLGSLHYFLGIAVTHHTGGLFLSQRKYAAEIIERAGMAACKSSSTPVDTKPKL 798
            + EF MKD+G +HYFLGI +  + GGLF+SQ+KYA +++  A MA C    TP+  +   
Sbjct: 1131 NKEFRMKDMGQVHYFLGIQIQTYDGGLFMSQQKYAEDLLITASMANCSPMPTPLPLQLDR 1190

Query: 799  SANSSAPHADPSHYRSLAGALQYLTFTRPDIAYAVQQVCLFMHDPREEHMHALKRIVRYI 858
             +N     +DP+++RSLAG LQYLT TRPDI +AV  VC  MH P     + LKRI+RYI
Sbjct: 1191 VSNQDEVFSDPTYFRSLAGKLQYLTLTRPDIQFAVNFVCQKMHQPSVSDFNLLKRILRYI 1250

Query: 859  QGTLDHGLHLYPSSTSTLIS----------YTDADWGGCPDTRRSTSGYCVFLGDNLISW 908
            +GT+  G+  Y S++S+++S          Y+D+D+  C +TRRS  GYC F+G N+ISW
Sbjct: 1251 KGTVSMGIQ-YNSNSSSVVSAYESDYDLSAYSDSDYANCKETRRSVGGYCTFMGQNIISW 1309

Query: 909  SAKRQATLSRSSAEAEYRGVANVVSESCWLRNLLLELHCPIRKASLVYCDNVSAIYLSGN 968
            S+K+Q T+SRSS EAEYR ++   SE  W+ ++L E+   +     ++CDN+SA+YL+ N
Sbjct: 1310 SSKKQPTVSRSSTEAEYRSLSETASEIKWMSSILREIGVSLPDTPELFCDNLSAVYLTAN 1369

Query: 969  PVQHQRTKHIEMDIHSVREKVARGEVRVLHVPSRYQIADIFTKGLPLVLFEDFRNNLSVR 1028
            P  H RTKH ++D H +RE+VA   + V H+P   Q+ADIFTK LP   F   R  L V 
Sbjct: 1370 PAFHARTKHFDVDHHYIRERVALKTLVVKHIPGHLQLADIFTKSLPFEAFTRLRFKLGVD 1429

Query: 1029 QPPVSTAGVC 1038
             PP  +   C
Sbjct: 1430 FPPTPSLRGC 1439


>At4g27210 putative protein
          Length = 1318

 Score =  717 bits (1852), Expect = 0.0
 Identities = 403/1057 (38%), Positives = 570/1057 (53%), Gaps = 86/1057 (8%)

Query: 20   IIVGNGHSIPIRGYSHTNLSFPNPPLTLKNVLHSPQLIKNLVSVRKFTTDNSVSVEFDPF 79
            I+V +G+ +PI     TNL+  +  + L +VL  P + K+L+S+ K T D   +VEF+  
Sbjct: 206  IMVDDGNYLPITHTGSTNLASSSGTVPLTDVLVCPSITKSLLSMSKLTQDFPCTVEFEYD 265

Query: 80   GFSVKDFQTGMRLMRCESRGDLYPITTS---QAISPSTFAALAPSLWHARLGHPGAPVVD 136
            G  V D  T   L+   +R  LY +      QA   +   + +  +WH RLGHP   +  
Sbjct: 266  GVRVNDKATKKLLLMGSNRDGLYCLKDDKQFQAFFSTRQRSASDEVWHRRLGHPHPQI-- 323

Query: 137  SLRKNKFIECNRASGSHICHSCSLGKHIKLPFVSSNSCTIMPFDIIHSDIWTSPVLSS-S 195
                                                   + P + +H D+W    ++S  
Sbjct: 324  ---------------------------------------LQPLERVHCDLWGPTTITSVQ 344

Query: 196  GHRYYVLFVDDYSNFLWTFPLSKKSQVFSIFLSFRTFIRTQFEREVKNIQCDNGKEFDNR 255
            G RYY +F+D YS F W +PL  KS  ++IFL+F   +  Q  +++   QCD G EF + 
Sbjct: 345  GFRYYAVFIDHYSRFSWIYPLKLKSDFYNIFLAFHKLVENQLSQKISVFQCDGGGEFVSH 404

Query: 256  HFWEFCKENGVAFRLSCPHTSSQNGKAERKIRTINNIIRTLLVHASLPPSFWHHALQMAT 315
             F +  + +G+  +LSCPHT  QNG AERK R +  +  ++L  + +P  FW  A   A 
Sbjct: 405  KFLQHLQSHGIQQQLSCPHTPQQNGLAERKHRHLVELGLSMLFQSHVPHKFWVEAFFTAN 464

Query: 316  YLINILPNKQLAYQ-SPLKILYQKEPSYSHLRVFGCLCYPLFPSTTINKLQARSTPCVFL 374
            +LIN+LP   L    SP + LY K+P Y+ LR FG  C+P       NK    S  CVFL
Sbjct: 465  FLINLLPTSALKESISPYEKLYDKKPDYTSLRSFGSACFPTLRDYAENKFNPCSLKCVFL 524

Query: 375  GYPSNHRSYKCYDLSSRKIIISRHVIFDETQFPFAKLH---NPQPYT-----YGFMDDGP 426
            GY   ++ Y+C    + ++ ISRHVIFDE+ +PF+  +   +PQP T     +    D P
Sbjct: 525  GYNEKYKGYRCLYPPTGRLYISRHVIFDESVYPFSHTYKHLHPQPRTPLLAAWLRSSDSP 584

Query: 427  SPYVIHHLTSQ---------PSLGQPAQHDLPNTQP----------TTQPTTPEEQH--- 464
            +P      +S+         P L Q     LP   P          TTQ +   +     
Sbjct: 585  APSTSTSPSSRSPLFTSADFPPLPQRKTPLLPTLVPISSVSHASNITTQQSPDFDSERTT 644

Query: 465  ----------AHSPPSSSPNPSPSTTATPSPPYQPTPISVPKPVTRSQHGIFKPKRQLNL 514
                      +HS  + S +      A+ +        +V   VTR++ GI KP  +   
Sbjct: 645  DFDSASIGDSSHSSQAGSDSEETIQQASVNVHQTHASTNVHPMVTRAKVGISKPNPRYVF 704

Query: 515  NTSVPRSPLPRNPVSALRDPNWKMAMDDEFNALIKNKTWELVPRPPDVNVIRSMWIFTHK 574
             +     P P+   +AL+ P W  AM +E     + +TW LVP   D++V+ S W+F  K
Sbjct: 705  LSHKVSYPEPKTVTAALKHPGWTGAMTEEIGNCSETQTWSLVPYKSDMHVLGSKWVFRTK 764

Query: 575  EKSDGVFERYKARLVGDGKTQQVGVDCGETFSPVVKPATIRTVLSLALSKAWSIHQLDVK 634
              +DG   + KAR+V  G  Q+ G+D  ET+SPVV+  T+R VL LA +  W I Q+DVK
Sbjct: 765  LHADGTLNKLKARIVAKGFLQEEGIDYLETYSPVVRTPTVRLVLHLATALNWDIKQMDVK 824

Query: 635  NAFLHGELKETVYMHQPMGFRDPNLPNHVCLLKKSLYGLKQAPRAWYKRFADYVSTIGFS 694
            NAFLHG+LKETVYM QP GF DP+ P+HVCLL KS+YGLKQ+PRAW+ +F+ ++   GF 
Sbjct: 825  NAFLHGDLKETVYMTQPAGFVDPSKPDHVCLLHKSIYGLKQSPRAWFDKFSTFLLEFGFF 884

Query: 695  HSTSDHSLFIYRKGTAMAYILLYVDDIILTASSDALRVTIISLLSTEFAMKDLGSLHYFL 754
             S SD SLFIY     +  +LLYVDD+++T +S     ++++ L+ EF M D+G LHYFL
Sbjct: 885  CSKSDPSLFIYAHNNNLILLLLYVDDMVITGNSSQTLTSLLAALNKEFRMTDMGQLHYFL 944

Query: 755  GIAVTHHTGGLFLSQRKYAAEIIERAGMAACKSSSTPVDTKPKLSANSSAPHADPSHYRS 814
            GI V     GLF+SQ+KYA +++  A M  C    TP+  +     +     +DP+++RS
Sbjct: 945  GIQVQRQQNGLFMSQQKYAEDLLIAASMEHCTPLPTPLPVQLDRVPHQEELFSDPTYFRS 1004

Query: 815  LAGALQYLTFTRPDIAYAVQQVCLFMHDPREEHMHALKRIVRYIQGTLDHGLHLYPSSTS 874
            +AG LQYLT TRPDI +AV  VC  MH P     H LKRI+RYI+GT+  G+     S +
Sbjct: 1005 IAGKLQYLTLTRPDIQFAVNFVCQKMHQPTISDFHLLKRILRYIKGTITMGISYSRDSPT 1064

Query: 875  TLISYTDADWGGCPDTRRSTSGYCVFLGDNLISWSAKRQATLSRSSAEAEYRGVANVVSE 934
             L +Y+D+DWG C  TRRS  G C F+G NL+SWS+K+  T+SRSS EAEY+ +++  SE
Sbjct: 1065 LLQAYSDSDWGNCKQTRRSVGGLCTFMGTNLVSWSSKKHPTVSRSSTEAEYKSLSDAASE 1124

Query: 935  SCWLRNLLLELHCPIRKASLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARGEV 994
              WL  LL EL  P+     ++CDN+SA+YL+ NP  H RTKH ++D H VRE+VA   +
Sbjct: 1125 ILWLSTLLRELRIPLPDTPELFCDNLSAVYLTANPAFHARTKHFDIDFHFVRERVALKAL 1184

Query: 995  RVLHVPSRYQIADIFTKGLPLVLFEDFRNNLSVRQPP 1031
             V H+P   QIADIFTK LP   F   R  L V   P
Sbjct: 1185 VVKHIPGSEQIADIFTKSLPYEAFIHLRGKLGVTLSP 1221


>At2g16000 putative retroelement pol polyprotein
          Length = 1454

 Score =  652 bits (1683), Expect = 0.0
 Identities = 383/1031 (37%), Positives = 554/1031 (53%), Gaps = 32/1031 (3%)

Query: 3    SEQGNLSSYFNLSNNRGIIVGNGHSIPIRGYSHTNLSFPNPPLTLKNVLHSPQLIKNLVS 62
            S   +L S  + S    + +  G ++ I G     L   N  + LKNVL  P+   NL+S
Sbjct: 442  SHDRSLFSSLDTSVLSAVNLPTGPTVKISGVGTLKL---NDDILLKNVLFIPEFRLNLIS 498

Query: 63   VRKFTTDNSVSVEFDPFGFSVKDFQTGMRLMRCESRGDLYPITTSQAISPSTFAALAPSL 122
            +   T D    V FD     ++D   G  L +     +LY +      S S  A +  S+
Sbjct: 499  ISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVANLYLLDVGDQ-SISVNAVVDISM 557

Query: 123  WHARLGHPGAPVVDSLRKNKFIECNRASGSHICHSCSLGKHIKLPFVSSNSCTIMPFDII 182
            WH RLGH     +D++  +     ++  GS  CH C L K  KL F +SN      FD++
Sbjct: 558  WHRRLGHASLQRLDAISDSLGTTRHKNKGSDFCHVCHLAKQRKLSFPTSNKVCKEIFDLL 617

Query: 183  HSDIWTS-PVLSSSGHRYYVLFVDDYSNFLWTFPLSKKSQVFSIFLSFRTFIRTQFEREV 241
            H D+W    V +  G++Y++  VDD+S   W + L  KS+V ++F +F   +  Q++ +V
Sbjct: 618  HIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVKV 677

Query: 242  KNIQCDNGKEFDNRHFWEFCKENGVAFRLSCPHTSSQNGKAERKIRTINNIIRTLLVHAS 301
            K ++ DN  E     F  F  E G+    SCP T  QN   ERK + I N+ R L+  + 
Sbjct: 678  KAVRSDNAPELK---FTSFYAEKGIVSFHSCPETPEQNSVVERKHQHILNVARALMFQSQ 734

Query: 302  LPPSFWHHALQMATYLINILPNKQLAYQSPLKILYQKEPSYSHLRVFGCLCYPLFPSTTI 361
            +P S W   +  A +LIN  P++ L  ++P +IL    P Y  LR FGCLCY        
Sbjct: 735  VPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAPVYEQLRTFGCLCYSSTSPKQR 794

Query: 362  NKLQARSTPCVFLGYPSNHRSYKCYDLSSRKIIISRHVIFDETQFPFAKLHNPQPYTYGF 421
            +K Q RS  C+FLGYPS ++ YK  DL S  + ISR+V F E  FP AK    +     F
Sbjct: 795  HKFQPRSRACLFLGYPSGYKGYKLMDLESNTVFISRNVQFHEEVFPLAKNPGSESSLKLF 854

Query: 422  MDDGP-SPYVIHHLTSQPSLGQPAQHDLPNTQPTTQPTTPEEQHAHSPPSSSPNPSPSTT 480
                P S  +I   T  PS        LP+ Q +  P     Q    PP+   N     T
Sbjct: 855  TPMVPVSSGIISDTTHSPS-------SLPS-QISDLPPQISSQRVRKPPAHL-NDYHCNT 905

Query: 481  ATPSPPYQPTPISVPKPVTRSQHGIFKPKRQLNLNTSVPRSPLPRNPVSALRDPNWKMAM 540
                  Y   PIS     +   +    P     +N ++ + P+P N   A     W  A+
Sbjct: 906  MQSDHKY---PIS-----STISYSKISPSHMCYIN-NITKIPIPTNYAEAQDTKEWCEAV 956

Query: 541  DDEFNALIKNKTWELVPRPPDVNVIRSMWIFTHKEKSDGVFERYKARLVGDGKTQQVGVD 600
            D E  A+ K  TWE+   P     +   W+FT K  +DG  ERYKARLV  G TQ+ G+D
Sbjct: 957  DAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKARLVAKGYTQKEGLD 1016

Query: 601  CGETFSPVVKPATIRTVLSLALSKAWSIHQLDVKNAFLHGELKETVYMHQPMGFRDPN-- 658
              +TFSPV K  TI+ +L ++ SK W + QLDV NAFL+GEL+E ++M  P G+ +    
Sbjct: 1017 YTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGELEEEIFMKIPEGYAERKGI 1076

Query: 659  -LPNHVCL-LKKSLYGLKQAPRAWYKRFADYVSTIGFSHSTSDHSLFIYRKGTAMAYILL 716
             LP++V L LK+S+YGLKQA R W+K+F+  + ++GF  +  DH+LF+         +L+
Sbjct: 1077 VLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLFLKMYDGEFVIVLV 1136

Query: 717  YVDDIILTASSDALRVTIISLLSTEFAMKDLGSLHYFLGIAVTHHTGGLFLSQRKYAAEI 776
            YVDDI++ ++S+A    +   L   F ++DLG L YFLG+ V   T G+ + QRKYA E+
Sbjct: 1137 YVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAGISICQRKYALEL 1196

Query: 777  IERAGMAACKSSSTPVDTKPKLSANSSAPHADPSHYRSLAGALQYLTFTRPDIAYAVQQV 836
            ++  GM ACK  S P+    K+  +      D   YR + G L YLT TRPDI +AV ++
Sbjct: 1197 LQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLTITRPDITFAVNKL 1256

Query: 837  CLFMHDPREEHMHALKRIVRYIQGTLDHGLHLYPSSTSTLISYTDADWGGCPDTRRSTSG 896
            C F   PR  H+ A  R+++YI+GT+  GL    SS  TL  + D+DW  C D+RRST+ 
Sbjct: 1257 CQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSDWASCQDSRRSTTS 1316

Query: 897  YCVFLGDNLISWSAKRQATLSRSSAEAEYRGVANVVSESCWLRNLLLELHCPIRKASLVY 956
            + +F+GD+LISW +K+Q T+SRSSAEAEYR +A    E  WL  LL+ L        ++Y
Sbjct: 1317 FTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFTLLVSLQAS-PPVPILY 1375

Query: 957  CDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARGEVRVLHVPSRYQIADIFTKGLPLV 1016
             D+ +AIY++ NPV H+RTKHI++D H+VRE++  GE+++LHV +  Q+ADI TK L   
Sbjct: 1376 SDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVRTEDQVADILTKPLFPY 1435

Query: 1017 LFEDFRNNLSV 1027
             FE  ++ +S+
Sbjct: 1436 QFEHLKSKMSI 1446


>At1g70010 hypothetical protein
          Length = 1315

 Score =  642 bits (1656), Expect = 0.0
 Identities = 365/982 (37%), Positives = 522/982 (52%), Gaps = 23/982 (2%)

Query: 45   LTLKNVLHSPQLIKNLVSVRKFTTDNSVSVEFDPFGFSVKDFQTGMRLMRCESRGDLYPI 104
            L L +VL  PQ   NL+SV   T      + FD     ++D    + +   +   +LY +
Sbjct: 323  LILNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVGMGKQVANLYIV 382

Query: 105  TTSQAISPSTFAALAPS------LWHARLGHPGAPVVDSLRKNKFIECNRASGSHICHSC 158
                   P T +++  +      LWH RLGHP    +  +         + +    C  C
Sbjct: 383  DLDSLSHPGTDSSITVASVTSHDLWHKRLGHPSVQKLQPMSSLLSFPKQKNNTDFHCRVC 442

Query: 159  SLGKHIKLPFVSSNSCTIMPFDIIHSDIWTS-PVLSSSGHRYYVLFVDDYSNFLWTFPLS 217
             + K   LPFVS N+ +  PFD+IH D W    V +  G+RY++  VDDYS   W + L 
Sbjct: 443  HISKQKHLPFVSHNNKSSRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLR 502

Query: 218  KKSQVFSIFLSFRTFIRTQFEREVKNIQCDNGKEFDNRHFWEFCKENGVAFRLSCPHTSS 277
             KS V ++  +F T +  QFE  +K ++ DN  E +   F +F    G+    SCP T  
Sbjct: 503  NKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPELN---FTQFYHSKGIVPYHSCPETPQ 559

Query: 278  QNGKAERKIRTINNIIRTLLVHASLPPSFWHHALQMATYLINILPNKQLAYQSPLKILYQ 337
            QN   ERK + I N+ R+L   + +P S+W   +  A YLIN LP   L  + P ++L +
Sbjct: 560  QNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLINRLPAPILEDKCPFEVLTK 619

Query: 338  KEPSYSHLRVFGCLCYPLFPSTTINKLQARSTPCVFLGYPSNHRSYKCYDLSSRKIIISR 397
              P+Y H++VFGCLCY        +K   R+  C F+GYPS  + YK  DL +  II+SR
Sbjct: 620  TVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYKLLDLETHSIIVSR 679

Query: 398  HVIFDETQFPFAKLHNPQPYTYGFMDDGPSPYVIHHLTS--QPSLGQPAQHDLPNTQPTT 455
            HV+F E  FPF      Q     F D  P+P +    +    PS    +   LP+  PT 
Sbjct: 680  HVVFHEELFPFLGSDLSQEEQNFFPDLNPTPPMQRQSSDHVNPSDSSSSVEILPSANPTN 739

Query: 456  QPTTPEEQHAHSPPSSSPNPSPSTTATPSPPYQPTPISVPKPVTRSQHGIFKPKRQLNLN 515
                P  Q +H     +  P+             TP  + K +  S   I  P   L   
Sbjct: 740  NVPEPSVQTSH---RKAKKPAYLQDYYCHSVVSSTPHEIRKFL--SYDRINDP--YLTFL 792

Query: 516  TSVPRSPLPRNPVSALRDPNWKMAMDDEFNALIKNKTWELVPRPPDVNVIRSMWIFTHKE 575
              + ++  P N   A +   W+ AM  EF+ L    TWE+   P D   I   WIF  K 
Sbjct: 793  ACLDKTKEPSNYTEAEKLQVWRDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIKY 852

Query: 576  KSDGVFERYKARLVGDGKTQQVGVDCGETFSPVVKPATIRTVLSLALSKAWSIHQLDVKN 635
             SDG  ERYKARLV  G TQ+ G+D  ETFSPV K  +++ +L +A     S+ QLD+ N
Sbjct: 853  NSDGSVERYKARLVAQGYTQKEGIDYNETFSPVAKLNSVKLLLGVAARFKLSLTQLDISN 912

Query: 636  AFLHGELKETVYMHQPMGFR----DPNLPNHVCLLKKSLYGLKQAPRAWYKRFADYVSTI 691
            AFL+G+L E +YM  P G+     D   PN VC LKKSLYGLKQA R WY +F+  +  +
Sbjct: 913  AFLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLKKSLYGLKQASRQWYLKFSSTLLGL 972

Query: 692  GFSHSTSDHSLFIYRKGTAMAYILLYVDDIILTASSDALRVTIISLLSTEFAMKDLGSLH 751
            GF  S  DH+ F+         +L+Y+DDII+ +++DA    + S + + F ++DLG L 
Sbjct: 973  GFIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRDLGELK 1032

Query: 752  YFLGIAVTHHTGGLFLSQRKYAAEIIERAGMAACKSSSTPVDTKPKLSANSSAPHADPSH 811
            YFLG+ +     G+ +SQRKYA ++++  G   CK SS P+D     + +S     +   
Sbjct: 1033 YFLGLEIVRSDKGIHISQRKYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGP 1092

Query: 812  YRSLAGALQYLTFTRPDIAYAVQQVCLFMHDPREEHMHALKRIVRYIQGTLDHGLHLYPS 871
            YR L G L YL  TRPDI +AV ++  F   PR+ H+ A+ +I++YI+GT+  GL    +
Sbjct: 1093 YRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQGLFYSAT 1152

Query: 872  STSTLISYTDADWGGCPDTRRSTSGYCVFLGDNLISWSAKRQATLSRSSAEAEYRGVANV 931
            S   L  Y +AD+  C D+RRSTSGYC+FLGD+LI W +++Q  +S+SSAEAEYR ++  
Sbjct: 1153 SELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYRSLSVA 1212

Query: 932  VSESCWLRNLLLELHCPIRKASLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVAR 991
              E  WL N L EL  P+ K +L++CDN +AI+++ N V H+RTKHIE D HSVRE++ +
Sbjct: 1213 TDELVWLTNFLKELQVPLSKPTLLFCDNEAAIHIANNHVFHERTKHIESDCHSVRERLLK 1272

Query: 992  GEVRVLHVPSRYQIADIFTKGL 1013
            G   + H+ +  QIAD FTK L
Sbjct: 1273 GLFELYHINTELQIADPFTKPL 1294


>At2g16670 putative retroelement pol polyprotein
          Length = 1333

 Score =  608 bits (1567), Expect = e-174
 Identities = 369/1022 (36%), Positives = 545/1022 (53%), Gaps = 45/1022 (4%)

Query: 45   LTLKNVLHSPQLIKNLVSVRKFTTDNSVSVEFDPFGFSVKDFQTGMRLMRCESR--GDLY 102
            L + +V +  +   +L+S+ +   +N   ++       V+D +T   +M    R  G  +
Sbjct: 313  LVMISVFYVEEFQSDLISIGQLMDENRCVLQMSDRFLVVQD-RTSRMVMGAGRRVGGTFH 371

Query: 103  PITTSQAISPSTFAALAPSLWHARLGHPGAPVVDSLRKNKFIECNRASGSHICHSCSLGK 162
              +T  A S +        LWH+R+GHP A VV SL     +  +    +  C  C   K
Sbjct: 372  FRSTEIAASVTVKEEKNYELWHSRMGHPAARVV-SLIPESSVSVSSTHLNKACDVCHRAK 430

Query: 163  HIKLPFVSSNSCTIMPFDIIHSDIWTS-PVLSSSGHRYYVLFVDDYSNFLWTFPLSKKSQ 221
              +  F  S + T+  F++I+ D+W      S +G RY++  +DDYS  +W + L+ KS+
Sbjct: 431  QTRNSFPLSINKTLRIFELIYCDLWGPYRTPSHTGARYFLTIIDDYSRGVWLYLLNDKSE 490

Query: 222  VFSIFLSFRTFIRTQFEREVKNIQCDNGKEFDNRHFWEFCKENGVAFRLSCPHTSSQNGK 281
                  +F      QF  ++K ++ DNG EF      +F +E GV    SC  T  +N +
Sbjct: 491  APCHLKNFFAMTDRQFNVKIKTVRSDNGTEF--LCLTKFFQEQGVIHERSCVATPERNDR 548

Query: 282  AERKIRTINNIIRTLLVHASLPPSFWHHALQMATYLINILPNKQLAYQSPLKILYQKEPS 341
             ERK R + N+ R L   A+LP  FW   +  A YLIN  P+  L   +P + L++K+P 
Sbjct: 549  VERKHRHLLNVARALRFQANLPIQFWGECVLTAAYLINRTPSSVLNDSTPYERLHKKQPR 608

Query: 342  YSHLRVFGCLCYPLFPSTTINKLQARSTPCVFLGYPSNHRSYKCYDLSSRKIIISRHVIF 401
            + HLRVFG LCY    +   +K   RS  CVF+GYP   + ++ +DL   +  +SR V+F
Sbjct: 609  FDHLRVFGSLCYAHNRNRGGDKFAERSRRCVFVGYPHGQKGWRLFDLEQNEFFVSRDVVF 668

Query: 402  DETQFPFAKLHNPQPYTYGFMDDGPSPYVIHHLTSQPSLGQPAQHDLP---NTQPTTQPT 458
             E +FPF ++ + Q       +   +P V   +  +  LGQ A    P   ++  +   T
Sbjct: 669  SELEFPF-RISHEQNVIEEEEEALWAPIVDGLIEEEVHLGQNAGPTPPICVSSPISPSAT 727

Query: 459  TPEEQHAHSPPSSS---PNPSPSTTATPSPPYQPT-----PISVPKPVTR---SQHGIFK 507
            +   +H+ S P  +   P P+ STT+  SP   PT     P+S  KP T    +   +  
Sbjct: 728  SSRSEHSTSSPLDTEVVPTPATSTTSASSPS-SPTNLQFLPLSRAKPTTAQAVAPPAVPP 786

Query: 508  PKRQLNLNTSVP--------RSPLPRNPVSALRDPNWKMAMDDE-------------FNA 546
            P+RQ   N + P         + + +   S L    +++   D+              +A
Sbjct: 787  PRRQSTRNKAPPVTLKDFVVNTTVCQESPSKLNSILYQLQKRDDTRRFSASHTTYVAIDA 846

Query: 547  LIKNKTWELVPRPPDVNVIRSMWIFTHKEKSDGVFERYKARLVGDGKTQQVGVDCGETFS 606
              +N TW +   PP    I S W++  K  SDG  ERYKARLV  G  Q+ G D GETF+
Sbjct: 847  QEENHTWTIEDLPPGKRAIGSQWVYKVKHNSDGSVERYKARLVALGNKQKEGEDYGETFA 906

Query: 607  PVVKPATIRTVLSLALSKAWSIHQLDVKNAFLHGELKETVYMHQPMGFRDPNLPNHVCLL 666
            PV K AT+R  L +A+ + W IHQ+DV NAFLHG+L+E VYM  P GF + + PN VC L
Sbjct: 907  PVAKMATVRLFLDVAVKRNWEIHQMDVHNAFLHGDLREEVYMKLPPGF-EASHPNKVCRL 965

Query: 667  KKSLYGLKQAPRAWYKRFADYVSTIGFSHSTSDHSLFIYRKGTAMAYILLYVDDIILTAS 726
            +K+LYGLKQAPR W+++    +   GF  S +D+SLF   KG+    IL+YVDD+I+T +
Sbjct: 966  RKALYGLKQAPRCWFEKLTTALKRYGFQQSLADYSLFTLVKGSVRIKILIYVDDLIITGN 1025

Query: 727  SDALRVTIISLLSTEFAMKDLGSLHYFLGIAVTHHTGGLFLSQRKYAAEIIERAGMAACK 786
            S          L++ F MKDLG L YFLGI V   T G+++ QRKYA +II   G+   K
Sbjct: 1026 SQRATQQFKEYLASCFHMKDLGPLKYFLGIEVARSTTGIYICQRKYALDIISETGLLGVK 1085

Query: 787  SSSTPVDTKPKLSANSSAPHADPSHYRSLAGALQYLTFTRPDIAYAVQQVCLFMHDPREE 846
             ++ P++   KL  ++S    DP  YR L G L YL  TR D+A++V  +  FM +PRE+
Sbjct: 1086 PANFPLEQNHKLGLSTSPLLTDPQRYRRLVGRLIYLAVTRLDLAFSVHILARFMQEPRED 1145

Query: 847  HMHALKRIVRYIQGTLDHGLHLYPSSTSTLISYTDADWGGCPDTRRSTSGYCVFLGDNLI 906
            H  A  R+VRY++     G+ L  S    +  + D+DW G P +RRS +GY V  GD+ I
Sbjct: 1146 HWAAALRVVRYLKADPGQGVFLRRSGDFQITGWCDSDWAGDPMSRRSVTGYFVQFGDSPI 1205

Query: 907  SWSAKRQATLSRSSAEAEYRGVANVVSESCWLRNLLLELHCPIRKASLVYCDNVSAIYLS 966
            SW  K+Q T+S+SSAEAEYR ++ + SE  WL+ LL  L     +  ++ CD+ SAIY++
Sbjct: 1206 SWKTKKQDTVSKSSAEAEYRAMSFLASELLWLKQLLFSLGVSHVQPMIMCCDSKSAIYIA 1265

Query: 967  GNPVQHQRTKHIEMDIHSVREKVARGEVRVLHVPSRYQIADIFTKGLPLVLFEDFRNNLS 1026
             NPV H+RTKHIE+D H VR++  +G +   HV +  Q+ADIFTK L    F  FR  L 
Sbjct: 1266 TNPVFHERTKHIEIDYHFVRDEFVKGVITPRHVGTTSQLADIFTKPLGRDCFSAFRIKLG 1325

Query: 1027 VR 1028
            +R
Sbjct: 1326 IR 1327


>At4g17450 retrotransposon like protein
          Length = 1433

 Score =  580 bits (1495), Expect = e-165
 Identities = 351/1030 (34%), Positives = 508/1030 (49%), Gaps = 71/1030 (6%)

Query: 12   FNLSNNRGIIVGNGHSIPIRGYSHTNLSFPNPPLTLKNVLHSPQLIKNLVSVRKFTTDNS 71
            F    N  + + N  ++ I G     LS     ++L NVL+ P+   NL+S  + T +  
Sbjct: 452  FRSLENTFVRLPNDCTVKIAGIGFIQLS---DAISLHNVLYIPEFKFNLIS--ELTKELM 506

Query: 72   VSVEFDPFGFSVKDFQTGMRLMRCESRGDLYPITTSQAISPSTFAALAPSLWHARLGHPG 131
            +          V DF      +  +    + P       S  +   +    WH RLGHP 
Sbjct: 507  IGRGSQVGNLYVLDFNENNHTVSLKGTTSMCP-----EFSVCSSVVVDSVTWHKRLGHPA 561

Query: 132  APVVDSLR-----KNKFIECNRASGSHICHSCSLGKHIKLPFVSSNSCTIMPFDIIHSDI 186
               +D L      K K I    +   H+CH C L K   L F S  +     FD++H D 
Sbjct: 562  YSKIDLLSDVLNLKVKKINKEHSPVCHVCHVCHLSKQKHLSFQSRQNMCSAAFDLVHIDT 621

Query: 187  WTSPVLSSSGHRYYVLFVDDYSNFLWTFPLSKKSQVFSIFLSFRTFIRTQFEREVKNIQC 246
            W               F    ++  W + L  KS V  +F +F   + TQ++ ++K+++ 
Sbjct: 622  WGP-------------FSVPTNDATWIYLLKNKSDVLHVFPAFINMVHTQYQTKLKSVRS 668

Query: 247  DNGKEFDNRHFWEFCKENGVAFRLSCPHTSSQNGKAERKIRTINNIIRTLLVHASLPPSF 306
            DN  E     F +    +G+    SCP T  QN   ERK + I N+ R LL  +++P  F
Sbjct: 669  DNAHELK---FTDLFAAHGIVAYHSCPETPEQNSVVERKHQHILNVARALLFQSNIPLEF 725

Query: 307  WHHALQMATYLINILPNKQLAYQSPLKILYQKEPSYSHLRVFGCLCYPLFPSTTINKLQA 366
            W   +  A +LIN LP   L  +SP + L    P+Y  L+ FGCLCY        +K + 
Sbjct: 726  WGDCVLTAVFLINRLPTPVLNNKSPYEKLKNIPPAYESLKTFGCLCYSSTSPKQRHKFEP 785

Query: 367  RSTPCVFLGYPSNHRSYKCYDLSSRKIIISRHVIFDETQFPFAKLHNPQPYTYGFMDDGP 426
            R+  CVFLGYP  ++ YK  D+ +  + ISRHVIF E  FPF         +    DD  
Sbjct: 786  RARACVFLGYPLGYKGYKLLDIETHAVSISRHVIFHEDIFPFI--------SSTIKDDIK 837

Query: 427  SPYVIHHLTSQPSLGQPAQ-HDLPNTQPTTQPTTPEEQHAHSPPSSSPNP---SPSTTAT 482
              +        P L  PA+  DLP  Q     T+  + H H   SSS       P +   
Sbjct: 838  DFF--------PLLQFPARTDDLPLEQ-----TSIIDTHPHQDVSSSKALVPFDPLSKRQ 884

Query: 483  PSPPYQPTPISVPKPVTRSQHGIFKPKRQLNLNTSVPRSPLPRNPVSALRDPNWKMAMDD 542
              PP            T   H             ++  + +P+    A     W  AM +
Sbjct: 885  KKPPKHLQDFHCYNNTTEPFHAFIN---------NITNAVIPQRYSEAKDFKAWCDAMKE 935

Query: 543  EFNALIKNKTWELVPRPPDVNVIRSMWIFTHKEKSDGVFERYKARLVGDGKTQQVGVDCG 602
            E  A+++  TW +V  PP+   I   W+FT K  +DG  ERYKARLV  G TQ+ G+D  
Sbjct: 936  EIGAMVRTNTWSVVSLPPNKKAIGCKWVFTIKHNADGSIERYKARLVAKGYTQEEGLDYE 995

Query: 603  ETFSPVVKPATIRTVLSLALSKAWSIHQLDVKNAFLHGELKETVYMHQPMGFRD---PNL 659
            ETFSPV K  ++R +L LA    WS+HQLD+ NAFL+G+L E +YM  P G+ D     L
Sbjct: 996  ETFSPVAKLTSVRMMLLLAAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPGYADLVGEAL 1055

Query: 660  PNH-VCLLKKSLYGLKQAPRAWYKRFADYVSTIGFSHSTSDHSLFI-YRKGTAMAYILLY 717
            P H +C L KS+YGLKQA R WY + ++ +  +GF  S +DH+LFI Y  G  M  +L+Y
Sbjct: 1056 PPHAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANGVLMG-VLVY 1114

Query: 718  VDDIILTASSDALRVTIISLLSTEFAMKDLGSLHYFLGIAVTHHTGGLFLSQRKYAAEII 777
            VDDI++ ++SD       + L + F ++DLG+  YFLGI +     G+ + QRKY  E++
Sbjct: 1115 VDDIMIVSNSDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIARSEKGISICQRKYILELL 1174

Query: 778  ERAGMAACKSSSTPVDTKPKLSANSSAPHADPSHYRSLAGALQYLTFTRPDIAYAVQQVC 837
               G    K SS P+D   KL+     P  D + YR L G L YL  TRPDIAYAV  +C
Sbjct: 1175 STTGFLGSKPSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKLMYLQITRPDIAYAVNTLC 1234

Query: 838  LFMHDPREEHMHALKRIVRYIQGTLDHGLHLYPSSTSTLISYTDADWGGCPDTRRSTSGY 897
             F H P   H+ A+ +++RY++GT+  GL         L  YTD+D+G C D+RR  + Y
Sbjct: 1235 QFSHAPTSVHLSAVHKVLRYLKGTVGQGLFYSADDKFDLRGYTDSDFGSCTDSRRCVAAY 1294

Query: 898  CVFLGDNLISWSAKRQATLSRSSAEAEYRGVANVVSESCWLRNLLLELHCPIRKASLVYC 957
            C+F+GD L+SW +K+Q T+S S+AEAE+R ++    E  WL  L  +   P    + +YC
Sbjct: 1295 CMFIGDYLVSWKSKKQDTVSMSTAEAEFRAMSQGTKEMIWLSRLFDDFKVPFIPPAYLYC 1354

Query: 958  DNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARGEVRVLHVPSRYQIADIFTKGLPLVL 1017
            DN +A+++  N V H+RTK +E+D +  RE V  G ++ + V +  Q+AD  TK +    
Sbjct: 1355 DNTAALHIVNNSVFHERTKFVELDCYKTREAVESGFLKTMFVETGEQVADPLTKAIHPAQ 1414

Query: 1018 FEDFRNNLSV 1027
            F      + V
Sbjct: 1415 FHKLIGKMGV 1424


>At4g14460 retrovirus-related like polyprotein
          Length = 1489

 Score =  579 bits (1492), Expect = e-165
 Identities = 360/1037 (34%), Positives = 505/1037 (47%), Gaps = 156/1037 (15%)

Query: 45   LTLKNVLHSPQLIKNLVSVRKFTTDNSVSVEFDPFGFSVKDFQTGMRLMRCESRGDLYPI 104
            L L NVLH P    NL+SV       S S  F      +++   G+ + R     +LY +
Sbjct: 515  LILHNVLHVPDFKFNLMSVSSLVKTISCSAHFYVDCCLIQELSQGLMIGRGRLYHNLYIL 574

Query: 105  TTSQAISPSTFAALA----------PSLWHARLGHPGAPVVDSLRKNKFIECNRASGSHI 154
             T    SPST    A            LWH RLGHP + V+  L++              
Sbjct: 575  ETENT-SPSTSTPAACLFTGSVLNDGHLWHQRLGHPSSVVLQKLKR-------------- 619

Query: 155  CHSCSLGKHIKLPFVSSNSCTIMPFDIIHSDIWTS-PVLSSSGHRYYVLFVDDYSNFLWT 213
                       L ++S N+    PFD++H DIW    + S  G RY++  VDD +   W 
Sbjct: 620  -----------LAYISHNNLASNPFDLVHLDIWGPFSIESIEGFRYFLTVVDDCTRTTWV 668

Query: 214  FPLSKKSQVFSIFLSFRTFIRTQFEREVKNIQCDNGKEFDNRHFWEFCKENGVAFRLSCP 273
            + L  K  V S+F  F   + TQF  ++K I+ DN  E     F E  KE+G+    SC 
Sbjct: 669  YMLRNKKDVSSVFPEFIKLVSTQFNAKIKAIRSDNAPELG---FTEIVKEHGMLHHFSCA 725

Query: 274  HTSSQNGKAERKIRTINNIIRTLLVHASLPPSFWHHALQMATYLINILPNKQLAYQSPLK 333
            +T  QN   ERK + I N+ R LL  +++P  +W   +  A +LIN LP+  L  +SP +
Sbjct: 726  YTPQQNSVVERKHQHILNVARALLFQSNIPMQYWSDCVTTAVFLINRLPSPLLNNKSPYE 785

Query: 334  ILYQKEPSYSHLRVFGCLCYPLFPSTTINKLQARSTPCVFLGYPSNHRSYKCYDLSSRKI 393
            ++  K+P YS L+ FGCLC+    +    K   R+  CVFLGYPS ++ YK  DL S  +
Sbjct: 786  LILNKQPDYSLLKNFGCLCFVSTNAHERTKFTPRARACVFLGYPSGYKGYKVLDLESHSV 845

Query: 394  IISRHVIFDETQFPFAKLHNPQPYTYGFMDDG-PSPYVIHHLTSQPSLGQPAQHDLPNTQ 452
             +SR+V+F E  FPF            F +   P P  +H + + P +      D  +  
Sbjct: 846  TVSRNVVFKEHVFPFKTSELLNKAVDMFPNSILPLPAPLHFVETMPLI------DEDSLI 899

Query: 453  PTTQPTTPEEQHAHSPPSSSPN--PSPSTTATPSPPYQPTPISVPKPVTRSQHGIFKPKR 510
            PTT  +   + HA S  S+ P+  P  S T T        PI+  K  TR+   + +   
Sbjct: 900  PTTTDSRTADNHASSSSSALPSIIPPSSNTETQDIDSNAVPITRSKRTTRAPSYLSEYHC 959

Query: 511  QL--------NLNTSVPRSPLPR------------NPVS--------------------- 529
             L          ++S+P  PLP              P+S                     
Sbjct: 960  SLVPSISTLPPTDSSIPIHPLPEIFTASSPKKTTPYPISTVVSYDKYTPLCQSYIFAYNT 1019

Query: 530  ---------ALRDPNWKMAMDDEFNALIKNKTWELVPRPPDVNVIRSMWIFTHKEKSDGV 580
                     A++   W     +E  A+  NKTW +   PPD NV+   W+FT K   DG 
Sbjct: 1020 ETEPKTFSQAMKSEKWIRVAVEELQAMELNKTWSVESLPPDKNVVGCKWVFTIKYNPDGT 1079

Query: 581  FERYKARLVGDGKTQQVGVDCGETFSPVVKPATIRTVLSLALSKAWSIHQLDVKNAFLHG 640
             ERYKARLV  G TQQ G+D  +TFSPV K  + + +L LA    W++ Q+DV +AFLHG
Sbjct: 1080 VERYKARLVAQGFTQQEGIDFLDTFSPVAKLTSAKMMLGLAAITGWTLTQMDVSDAFLHG 1139

Query: 641  ELKETVYMHQPMGFRDPN----LPNHVCLLKKSLYGLKQAPRAWYKRFADYVSTIGFSHS 696
            +L E ++M  P G+  P      PN VC L KS+YGLKQA R WYKRF            
Sbjct: 1140 DLDEEIFMSLPQGYTPPAGTILPPNPVCRLLKSIYGLKQASRQWYKRFVA---------- 1189

Query: 697  TSDHSLFIYRKGTAMAYILLYVDDIILTASSDALRVTIISLLSTEFAMKDLGSLHYFLGI 756
                              L+Y+DDI++ +++DA    + +LL +EF +KDLG   +FLG+
Sbjct: 1190 -----------------ALVYIDDIMIASNNDAEVENLKALLRSEFKIKDLGPARFFLGL 1232

Query: 757  AVTHHTGGLFLSQRKYAAEIIERAGMAACKSSSTPVDTKPKLSANSSAPHADPSHYRSLA 816
                                        CK SS P+D    L  +   P  +P+ YR L 
Sbjct: 1233 L--------------------------GCKPSSIPMDPTLHLVRDMGTPLPNPTAYRKLI 1266

Query: 817  GALQYLTFTRPDIAYAVQQVCLFMHDPREEHMHALKRIVRYIQGTLDHGLHLYPSSTSTL 876
            G L YLT TRPDI YAV Q+  F+  P + H+ A  +++RYI+     GL         L
Sbjct: 1267 GRLLYLTITRPDITYAVHQLSQFISAPSDIHLQAAHKVLRYIKANPGQGLMYSADYEICL 1326

Query: 877  ISYTDADWGGCPDTRRSTSGYCVFLGDNLISWSAKRQATLSRSSAEAEYRGVANVVSESC 936
              ++DADW  C DTRRS SG+C++LG +LISW +K+QA  SRSS E+EYR +A    E  
Sbjct: 1327 NGFSDADWAACKDTRRSISGFCIYLGTSLISWKSKKQAVASRSSTESEYRSMAQATCEII 1386

Query: 937  WLRNLLLELHCPIRKASLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARGEVRV 996
            WL+ LL +LH P+   + ++CDN SA++ S NPV H+RTKHIE+D H+VR+++  G ++ 
Sbjct: 1387 WLQQLLKDLHIPLTCPAKLFCDNKSALHSSLNPVFHERTKHIEIDCHTVRDQIKAGNLKA 1446

Query: 997  LHVPSRYQIADIFTKGL 1013
            LHVP+  Q ADI TK L
Sbjct: 1447 LHVPTENQHADILTKAL 1463


>At1g26990 polyprotein, putative
          Length = 1436

 Score =  546 bits (1406), Expect = e-155
 Identities = 337/1035 (32%), Positives = 519/1035 (49%), Gaps = 76/1035 (7%)

Query: 3    SEQGNLSSYFNLSNNRGIIVGNGHSIPIRGYSHTNLSFPNPPLTLKNVLHSPQLIKNLVS 62
            + + NL   +   +   + + NGH++ I G     L+     L+L NVL  P+   NL+S
Sbjct: 432  THERNLYHTYKALDRTFVRLPNGHTVKIEGTGFIQLT---DALSLHNVLFIPEFKFNLLS 488

Query: 63   VRKFTTDNSVSVEFDPFGFSVKDFQTGMRLMRCESRGDLYPITTSQA-ISPSTFAALA-- 119
            V   T      V F      ++     + L +    G+LY +   ++ +  S+F   +  
Sbjct: 489  VSVLTKTLQSKVSFTSDECMIQALTKELMLGKGSQVGNLYILNLDKSLVDVSSFPGKSVC 548

Query: 120  ------PSLWHARLGHPGAPVVDSLRKNKFIECNRAS--GSHICHSCSLGKHIKLPFVSS 171
                    +WH RLGHP    +D+L     +   + +   SH CH C L K   LPF S 
Sbjct: 549  SSVKNESEMWHKRLGHPSFAKIDTLSDVLMLPKQKINKDSSH-CHVCHLSKQKHLPFKSV 607

Query: 172  NSCTIMPFDIIHSDIWTS-PVLSSSGHRYYVLFVDDYSNFLWTFPLSKKSQVFSIFLSFR 230
            N      F+++H D W    V +   +RY++  VDD+S   W + L +KS V ++F SF 
Sbjct: 608  NHIREKAFELVHIDTWGPFSVPTVDSYRYFLTIVDDFSRATWIYLLKQKSDVLTVFPSFL 667

Query: 231  TFIRTQFEREVKNIQCDNGKEFDNRHFWEFCKENGVAFRLSCPHTSSQNGKAERKIRTIN 290
              + TQ+  +V +++ DN  E     F E   + G+     CP T  QN   ERK + + 
Sbjct: 668  KMVETQYHTKVCSVRSDNAHELK---FNELFAKEGIKADHPCPETPEQNFVVERKHQHLL 724

Query: 291  NIIRTLLVHASLPPSFWHHALQMATYLINILPNKQLAYQSPLKILYQKEPSYSHLRVFGC 350
            N+ R L+  + +P  +W   +  A +LIN L +  +  ++P + L + +P YS L+ FGC
Sbjct: 725  NVARALMFQSGIPLEYWGDCVLTAVFLINRLLSPVINNETPYERLTKGKPDYSSLKAFGC 784

Query: 351  LCYPLFPSTTINKLQARSTPCVFLGYPSNHRSYKCYDLSSRKIIISRHVIFDETQFPFAK 410
            LCY      +  K   R+  C+FLGYP  ++ YK  D+ +  + ISRHVIF E  FPFA 
Sbjct: 785  LCYCSTSPKSRTKFDPRAKACIFLGYPMGYKGYKLLDIETYSVSISRHVIFYEDIFPFAS 844

Query: 411  LHNPQ------PYTYGFMDDGPSPYVIHHLTS-QPSLGQPAQHDLPNTQPTTQPTTPEEQ 463
             +         P+ Y      P+P    HL   Q S   P  HD  ++     P+ P+  
Sbjct: 845  SNITDAAKDFFPHIYL-----PAPNNDEHLPLVQSSSDAPHNHD-ESSSMIFVPSEPKST 898

Query: 464  HAHSPPSSSP-----NPSPSTTATPSPPYQPTPISVPKPVTRSQHGIFKPKRQLNLNTSV 518
                 PS        N +P+TT T   PY P    +         G F     +N+ T+ 
Sbjct: 899  RQRKLPSHLQDFHCYNNTPTTTKTS--PY-PLTNYISYSYLSEPFGAF-----INIITA- 949

Query: 519  PRSPLPRNPVSALRDPNWKMAMDDEFNALIKNKTWELVPRPPDVNVIRSMWIFTHKEKSD 578
              + LP+    A  D  W  AM  E +A ++  TW +   P     +   WI T K  +D
Sbjct: 950  --TKLPQKYSEARLDKVWNDAMGKEISAFVRTGTWSICDLPAGKVAVGCKWIITIKFLAD 1007

Query: 579  GVFERYKARLVGDGKTQQVGVDCGETFSPVVKPATIRTVLSLALSKAWSIHQLDVKNAFL 638
            G  ER+KARLV  G TQQ G+D   TFSPV K  T++ +LSLA    W +HQLD+ NA L
Sbjct: 1008 GSIERHKARLVAKGYTQQEGIDFFNTFSPVAKMVTVKVLLSLAPKMKWYLHQLDISNALL 1067

Query: 639  HGELKETVYMHQPMGFRDPNLPNHVCLLKKSLYGLKQAPRAWYKRFADYVSTIGFSHSTS 698
            +G+L+E +YM  P G+ +             + G + +P A                   
Sbjct: 1068 NGDLEEEIYMKLPPGYSE-------------IQGQEVSPNA---------------KCHG 1099

Query: 699  DHSLFIYRKGTAMAYILLYVDDIILTASSDALRVTIISLLSTEFAMKDLGSLHYFLGIAV 758
            DH+LF+  +      +L+YVDDI++ ++++A    + S LS+ F ++DLG   +FLGI +
Sbjct: 1100 DHTLFVKAQDGFFLVVLVYVDDILIASTTEAASAELTSQLSSFFQLRDLGEPKFFLGIEI 1159

Query: 759  THHTGGLFLSQRKYAAEIIERAGMAACKSSSTPVDTKPKLSANSSAPHADPSHYRSLAGA 818
              +  G+ L QRKY  +++  +  + CK SS P++   KLS ++     D   YR + G 
Sbjct: 1160 ARNADGISLCQRKYVLDLLASSDFSDCKPSSIPMEPNQKLSKDTGTLLEDGKQYRRILGK 1219

Query: 819  LQYLTFTRPDIAYAVQQVCLFMHDPREEHMHALKRIVRYIQGTLDHGLHLYPSSTSTLIS 878
            LQYL  TRPDI +AV ++  +   P + H+ AL +I+RY++GT+  GL     +   L  
Sbjct: 1220 LQYLCLTRPDINFAVSKLAQYSSAPTDIHLQALHKILRYLKGTIGQGLFYGADTNFDLRG 1279

Query: 879  YTDADWGGCPDTRRSTSGYCVFLGDNLISWSAKRQATLSRSSAEAEYRGVANVVSESCWL 938
            ++D+DW  CPDTRR  +G+ +F+G++L+SW +K+Q  +S SSAEAEYR ++    E  WL
Sbjct: 1280 FSDSDWQTCPDTRRCVTGFAIFVGNSLVSWRSKKQDVVSMSSAEAEYRAMSVATKELIWL 1339

Query: 939  RNLLLELHCPIRKASLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARGEVRVLH 998
              +L     P    + +YCDN +A++++ N V H+RTKHIE D H VRE +  G ++ + 
Sbjct: 1340 GYILTAFKIPFTHPAYLYCDNEAALHIANNSVFHERTKHIENDCHKVRECIEAGILKTIF 1399

Query: 999  VPSRYQIADIFTKGL 1013
            V +  Q+AD  TK L
Sbjct: 1400 VRTDNQLADTLTKPL 1414


>At3g45520 copia-like polyprotein
          Length = 1363

 Score =  512 bits (1318), Expect = e-145
 Identities = 339/1013 (33%), Positives = 500/1013 (48%), Gaps = 50/1013 (4%)

Query: 45   LTLKNVLHSPQLIKNLVSVRKFTTDNSVSVEFDPFGFSVKDFQTGMRLMRCESRGDLYPI 104
            +TL+NV + P + +NL+S+  F        +F+     ++       L+       LY +
Sbjct: 370  VTLQNVRYIPDMDRNLLSLGTF---EKAGHKFESENGMLRIKSGNQVLLEGRRYDTLYIL 426

Query: 105  TTSQAISPSTFAALAPS---LWHARLGHPGAPVVDSLRKNKFIECNRASGSHICHSCSLG 161
                A   S   A A     LWH RL H     +  L K  F++  + S    C  C  G
Sbjct: 427  HGKPATDESLAVARANDDTVLWHRRLCHMSQKNMSLLIKKGFLDKKKVSMLDTCEDCIYG 486

Query: 162  KHIKLPFVSSNSCTIMPFDIIHSDIWTSPV--LSSSGHRYYVLFVDDYSNFLWTFPLSKK 219
            +  K+ F  +   T    + +HSD+W +P   +S    +Y++ F+DDY+  +W + L  K
Sbjct: 487  RAKKIGFNLAQHDTKKKLEYVHSDLWGAPTVPMSLGNCQYFISFIDDYTRKVWVYFLKTK 546

Query: 220  SQVFSIFLSFRTFIRTQFEREVKNIQCDNGKEFDNRHFWEFCKENGVAFRLSCPHTSSQN 279
             + F  F+S+ + +  Q    VK ++ DNG EF NR F  FC+E G     +C +T  QN
Sbjct: 547  DEAFEKFVSWISLVENQSGERVKTLRTDNGLEFCNRMFDGFCEEKGFQRHRTCAYTPQQN 606

Query: 280  GKAERKIRTINNIIRTLLVHASLPPSFWHHALQMATYLINILPNKQLAYQSPLKILYQKE 339
            G  ER  RTI   +R++L  + LP  FW  A   A  LIN  P   + ++ P K    K 
Sbjct: 607  GVVERMNRTIMEKVRSMLCDSGLPKRFWAEATHTAVLLINKTPCSAINFEFPDKRWSGKA 666

Query: 340  PSYSHLRVFGCLCYPLFPSTTINKLQARSTPCVFLGYPSNHRSYKCYDLSSRKIIISRHV 399
            P YS+LR +GC+    F  T   KL  R+   V +GYPS  + YK + +  +K ++SR+V
Sbjct: 667  PIYSYLRRYGCVT---FVHTDGGKLNLRAKKGVLIGYPSGVKGYKVWLIEEKKCVVSRNV 723

Query: 400  IFDETQFPFAKLHNPQPYTYGFMDDGPSPYVIHHLTSQPSLGQPAQHDLPNTQPTTQPTT 459
             F E    +  L   +       DD    Y+   L +        +       P T+   
Sbjct: 724  SFQENAV-YKDLMQRKEQVSCEEDDHAGSYIDLDLEADKDNSSGGEQSQAQVTPATRGAV 782

Query: 460  PEEQHAHSPPSSSPNPSPSTTATPSPPYQPTPISVPKPVTRSQHGIFKPKR--------Q 511
                       +S  P   T          +P+S      R +  I  P+R        +
Sbjct: 783  -----------TSTPPRYETDDIEETDVHQSPLSYHLVRDRERREIRAPRRFDDEDYYAE 831

Query: 512  LNLNTSVPRSPLPRNPVSALRDPNW---KMAMDDEFNALIKNKTWELVPRPPDVNVIRSM 568
                T    +  P +   A+RD NW   ++AM++E  + +KN TW  V RP    +I S 
Sbjct: 832  ALYTTEDGDAVEPADYKEAVRDENWDKWRLAMNEEIESQLKNDTWTTVTRPEKQRIIGSR 891

Query: 569  WIFTHKEKSDGVFE-RYKARLVGDGKTQQVGVDCGETFSPVVKPATIRTVLSLALSKAWS 627
            WI+ +K+   GV E R+KARLV  G  Q+ GVD  E F+PVVK  +IR +LS+   +   
Sbjct: 892  WIYKYKQGIPGVEEPRFKARLVAKGYAQREGVDYHEIFAPVVKHVSIRILLSIVAQENLE 951

Query: 628  IHQLDVKNAFLHGELKETVYMHQPMGFRDPNLPNHVCLLKKSLYGLKQAPRAWYKRFADY 687
            + QLDVK AFLHGELKE +YM  P G       N VCLL KSLYGLKQAPR W ++F  Y
Sbjct: 952  LEQLDVKTAFLHGELKEKIYMMPPEGCESLFKENEVCLLNKSLYGLKQAPRQWNEKFNHY 1011

Query: 688  VSTIGFSHSTSDHSLFIYR-KGTAMAYILLYVDDIILTASSDALRVTIISLLSTEFAMKD 746
            ++ IGF  S  D   +  +    +  Y+L YVDD+++ A++      +   LS +F MKD
Sbjct: 1012 MTEIGFKRSDYDSCAYTKKLSDDSTMYLLFYVDDMLVAANNMQAIDALKKELSIKFEMKD 1071

Query: 747  LGSLHYFLG--IAVTHHTGGLFLSQRKYAAEIIERAGMAACKSSSTPVD--------TKP 796
            LG+    LG  I +    G L+LSQ  Y  ++++   M   K + TP+         T+ 
Sbjct: 1072 LGAAKKILGIEIIIDREAGVLWLSQESYLNKVLKTFNMLESKPALTPLGAHLKMKSATEE 1131

Query: 797  KLSANSSAPHADPSHYRSLAGALQY-LTFTRPDIAYAVQQVCLFMHDPREEHMHALKRIV 855
            KLS      ++ P  Y S  G++ Y +  TRPD+AY V  V  FM  P +EH   +K ++
Sbjct: 1132 KLSTEEEYMNSVP--YSSAVGSIMYAMIGTRPDLAYPVGVVSRFMSQPAKEHWLGVKWVL 1189

Query: 856  RYIQGTLDHGLHLYPSSTSTLISYTDADWGGCPDTRRSTSGYCVFLGDNLISWSAKRQAT 915
            RYI+GT+D  L    +S  ++  Y DAD+    D RRS +G    LG N ISW +  Q  
Sbjct: 1190 RYIKGTVDTRLCYKRNSDFSICGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRV 1249

Query: 916  LSRSSAEAEYRGVANVVSESCWLRNLLLELHCPIRKASLVYCDNVSAIYLSGNPVQHQRT 975
            +++SS E EY  +   V E+ WL+ LL +     +K   ++CD+ SAI LS N V H+RT
Sbjct: 1250 VAQSSTECEYMSLTEAVKEAIWLKGLLKDFGYE-QKNVEIFCDSQSAIALSKNNVHHERT 1308

Query: 976  KHIEMDIHSVREKVARGEVRVLHVPSRYQIADIFTKGLPLVLFEDFRNNLSVR 1028
            KHI++  H +RE +A G+V V  + +    ADIFTK LP+  F+   + L V+
Sbjct: 1309 KHIDVKFHFIREIIADGKVEVSKISTEKNPADIFTKVLPVNKFQTALDFLRVK 1361


>At2g13930 putative retroelement pol polyprotein
          Length = 1335

 Score =  511 bits (1316), Expect = e-145
 Identities = 339/1034 (32%), Positives = 509/1034 (48%), Gaps = 40/1034 (3%)

Query: 22   VGNGHSIPIRGYSHTNL-SFPNPPLTLKNVLHSPQLIKNLVSVRKFTTDNSVSVEFDPFG 80
            +GN    P++G     + +     + L +V + P + +NL+S+             D   
Sbjct: 315  MGNDTYSPVKGIGSIKIRNSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGIL 374

Query: 81   FSVKDFQTGMRLMRCESRGDLYPITTSQAISPSTFAALAPSLWHARLGHPGAPVVDSLRK 140
              VK   T ++  + ++   L  +T       S       +LWH+RLGH     ++ L K
Sbjct: 375  KIVKGCSTILKGQKRDTLYILDGVTEEGESHSSAEVKDETALWHSRLGHMSQKGMEILVK 434

Query: 141  NKFIECNRASGSHICHSCSLGKHIKLPFVSSNSCTIMPFDIIHSDIWTSP--VLSSSGHR 198
               +          C  C  GK  ++ F  +   T      +HSD+W SP    S    +
Sbjct: 435  KGCLRREVIKELEFCEDCVYGKQHRVSFAPAQHVTKEKLAYVHSDLWGSPHNPASLGNSQ 494

Query: 199  YYVLFVDDYSNFLWTFPLSKKSQVFSIFLSFRTFIRTQFEREVKNIQCDNGKEFDNRHFW 258
            Y++ FVDDYS  +W + L KK + F  F+ ++  +  Q +R+VK ++ DNG E+ N +F 
Sbjct: 495  YFISFVDDYSRKVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFE 554

Query: 259  EFCKENGVAFRLSCPHTSSQNGKAERKIRTINNIIRTLLVHASLPPSFWHHALQMATYLI 318
            +FCKE G+    +C +T  QNG AER  RTI + +R++L  + +   FW  A   A YLI
Sbjct: 555  KFCKEEGIVRHKTCAYTPQQNGIAERLNRTIMDKVRSMLSRSGMEKKFWAEAASTAVYLI 614

Query: 319  NILPNKQLAYQSPLKILYQKEPSYSHLRVFGCLCYPLFPSTTINKLQARSTPCVFLGYPS 378
            N  P+  + +  P +      P  S LR FGCL Y         KL  RS   +F  YP 
Sbjct: 615  NRSPSTAINFDLPEEKWTGALPDLSSLRKFGCLAY---IHADQGKLNPRSKKGIFTSYPE 671

Query: 379  NHRSYKCYDLSSRKIIISRHVIFDETQFPFAKLHNPQPYTYGFMDDGPSPYVIHHLTSQP 438
              + YK + L  +K +ISR+VIF E Q  F  L      T    D       +  L   P
Sbjct: 672  GVKGYKVWVLEDKKCVISRNVIFRE-QVMFKDLKGDSQNTISESD-------LEDLRVNP 723

Query: 439  SLGQPAQHDLPN-TQPTTQPTTPEEQHAHSPPSSSPNPSPSTTATPSPPYQPTPISVPKP 497
             +      D    TQ  + P+  E   +H+P  +SP  S    +          +S  + 
Sbjct: 724  DMNDQEFTDQGGATQDNSNPS--EATTSHNPVLNSPTHSQDEESEEEDSDAVEDLSTYQL 781

Query: 498  VTRSQHGIFKPKRQLNLNTSV--------PRSPLPRNPVSALRDPNWK---MAMDDEFNA 546
            V        K   + N +  V           P P++   AL DP+W+    AM +E  +
Sbjct: 782  VRDRVRRTIKANPKYNESNMVGFAYYSEDDGKPEPKSYQEALLDPDWEKWNAAMKEEMVS 841

Query: 547  LIKNKTWELVPRPPDVNVIRSMWIFTHKEKSDGV-FERYKARLVGDGKTQQVGVDCGETF 605
            + KN TW+LV +P  V +I   W+FT K    GV   R+ ARLV  G TQ+ GVD  E F
Sbjct: 842  MSKNHTWDLVTKPEKVKLIGCRWVFTRKAGIPGVEAPRFIARLVAKGFTQKEGVDYNEIF 901

Query: 606  SPVVKPATIRTVLSLALSKAWSIHQLDVKNAFLHGELKETVYMHQPMGFRDPNLPNHVCL 665
            SPVVK  +IR +LS+ +     + Q+DVK AFLHG L+E +YM QP GF      N VCL
Sbjct: 902  SPVVKHVSIRYLLSMVVHYNMELQQMDVKTAFLHGFLEEEIYMAQPEGFEIKRGSNKVCL 961

Query: 666  LKKSLYGLKQAPRAWYKRFADYVSTIGFSHSTSDHSLFIYR-KGTAMAYILLYVDDIILT 724
            LK+SLYGLKQ+PR W  RF +++  I ++ S  D  ++  +  G    Y+LLYVDD+++ 
Sbjct: 962  LKRSLYGLKQSPRQWNLRFDEFMRGIKYTRSAYDSCVYFKKCNGDTYIYLLLYVDDMLIA 1021

Query: 725  ASSDALRVTIISLLSTEFAMKDLGSLHYFLGIAVT--HHTGGLFLSQRKYAAEIIERAGM 782
            +++ +    +  LLS EF MKDLG     LG+ ++     G L LSQ  Y  +++    M
Sbjct: 1022 SANKSEVNELKQLLSREFEMKDLGDAKKILGMEISRDRDAGLLTLSQEGYVKKVLRSFQM 1081

Query: 783  AACKSSSTPVDTKPKLSANSSAPHADPSH------YRSLAGALQY-LTFTRPDIAYAVQQ 835
               K  STP+    KL A +   + +         Y +  G++ Y +  TRPD+AY++  
Sbjct: 1082 DNAKPVSTPLGIHFKLKAATDKEYEEQFERMKIVPYANTIGSIMYSMIGTRPDLAYSLGV 1141

Query: 836  VCLFMHDPREEHMHALKRIVRYIQGTLDHGLHLYPSSTSTLISYTDADWGGCPDTRRSTS 895
            +  FM  P ++H  A+K ++RY++GT    L         L  Y D+D+G   DTRRS +
Sbjct: 1142 ISRFMSKPLKDHWQAVKWVLRYMRGTEKKKLCFRKQEDFLLRGYCDSDYGSNFDTRRSIT 1201

Query: 896  GYCVFLGDNLISWSAKRQATLSRSSAEAEYRGVANVVSESCWLRNLLLELHCPIRKASLV 955
            GY   +G N ISW +K Q  ++ SS EAEY  +   V E+ WL+    EL    +    V
Sbjct: 1202 GYVFTVGGNTISWKSKLQKVVAISSTEAEYMALTEAVKEALWLKGFAAELG-HSQDYVEV 1260

Query: 956  YCDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARGEVRVLHVPSRYQIADIFTKGLPL 1015
            + D+ SAI L+ N V H+RTKHI++ +H +R+ +  G ++V+ + +    A+IFTK +PL
Sbjct: 1261 HSDSQSAITLAKNSVHHERTKHIDIRLHFIRDIICAGLIKVVKIATECNPANIFTKTVPL 1320

Query: 1016 VLFEDFRNNLSVRQ 1029
              FE   N L V +
Sbjct: 1321 AKFEGALNMLRVTE 1334


>At2g07550 putative retroelement pol polyprotein
          Length = 1356

 Score =  510 bits (1313), Expect = e-144
 Identities = 342/1053 (32%), Positives = 524/1053 (49%), Gaps = 63/1053 (5%)

Query: 12   FNLSNNRGIIVGNGHSIPIRGYSHTNLSFPNP-PLTLKNVLHSPQLIKNLVSVRKFTTDN 70
            FN      + +GN     +RG     +   +   + L NV + P + +NL+S+  F    
Sbjct: 329  FNEDAGGSVRMGNKTVSRVRGVGTIRVKNSDGLTIVLTNVRYIPDMDRNLLSLGTF---- 384

Query: 71   SVSVEFDPFGFSVKD----FQTGMRLMRCESRGDLYPITTSQAISPSTFAALAPS----L 122
                E   + F  +D     + G +++    R D   +   + ++  + A +  +    L
Sbjct: 385  ----EKAGYKFESEDGILRIKAGNQVLLTGRRYDTLYLLNWKPVASESLAVVKRADDTVL 440

Query: 123  WHARLGHPGAPVVDSLRKNKFIECNRASGSHICHSCSLGKHIKLPFVSSNSCTIMPFDII 182
            WH RL H     ++ L +  F++  + S   +C  C  GK  +  F  ++  T    + I
Sbjct: 441  WHQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDCIYGKAKRKSFSLAHHDTKEKLEYI 500

Query: 183  HSDIWTSPV--LSSSGHRYYVLFVDDYSNFLWTFPLSKKSQVFSIFLSFRTFIRTQFERE 240
            HSD+W +P   LS    +Y++  +DD++  +W + +  K + F  F+ +   +  Q +R 
Sbjct: 501  HSDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYFMKTKDEAFEKFVEWVNLVENQTDRR 560

Query: 241  VKNIQCDNGKEFDNRHFWEFCKENGVAFRLSCPHTSSQNGKAERKIRTINNIIRTLLVHA 300
            VK ++ DNG EF N+ F  FC+  G+    +C +T  QNG AER  RTI   +R++L  +
Sbjct: 561  VKTLRTDNGLEFCNKLFDGFCESIGIHRHRTCAYTPQQNGVAERMNRTIMEKVRSMLSDS 620

Query: 301  SLPPSFWHHALQMATYLINILPNKQLAYQSPLKILYQKEPSYSHLRVFGCLCYPLFPSTT 360
             LP  FW  A      LIN  P+  L ++ P K      P YS+LR +GC+    F  T 
Sbjct: 621  GLPKRFWAEATHTTVLLINKTPSSALNFEIPDKKWSGNPPVYSYLRRYGCVA---FVHTD 677

Query: 361  INKLQARSTPCVFLGYPSNHRSYKCYDLSSRKIIISRHVIFDETQFPFAKLHNPQPYTYG 420
              KL+ R+   V +GYP   + YK + L  RK ++SR++IF E    +  L   Q     
Sbjct: 678  DGKLEPRAKKGVLIGYPVGVKGYKVWILDERKCVVSRNIIFQENAV-YKDLMQRQENVST 736

Query: 421  FMDDGPSPYVIHHLTSQPSLGQPAQHDLPNTQPTTQPTTPEEQHAHSPPSSSPNPSPSTT 480
              DD    Y+   L ++  +      ++ NT P      PE     +P +   N    + 
Sbjct: 737  EEDDQTGSYLEFDLEAERDVISGGDQEMVNTIPA-----PESPVVSTPTTQDTNDDEDSD 791

Query: 481  ATPSPPYQPTPISVPKPVTRSQHGIFKPKR--------QLNLNTSVPRSPLPRNPVSALR 532
               SP      +S      R +  I  P+R        +    T    +  P N   A  
Sbjct: 792  VNQSP------LSYHLVRDRDKREIRAPRRFDDEDYYAEALYTTEDGEAVEPENYRKAKL 845

Query: 533  DPN---WKMAMDDEFNALIKNKTWELVPRPPDVNVIRSMWIFTHKEKSDGVFE-RYKARL 588
            D N   WK+AMD+E ++  KN TW +V RP +  +I   WIF +K    GV E R+KARL
Sbjct: 846  DANFDKWKLAMDEEIDSQEKNNTWTIVTRPENQRIIGCRWIFKYKLGILGVEEPRFKARL 905

Query: 589  VGDGKTQQVGVDCGETFSPVVKPATIRTVLSLALSKAWSIHQLDVKNAFLHGELKETVYM 648
            V  G  Q+ G+D  E F+PVVK  +IR +LS+   +   + QLDVK AFLHGELKE +YM
Sbjct: 906  VAKGYAQKEGIDYHEIFAPVVKHVSIRVLLSIVAQEDLELEQLDVKTAFLHGELKEKIYM 965

Query: 649  HQPMGFRDPNLPNHVCLLKKSLYGLKQAPRAWYKRFADYVSTIGFSHSTSDHSLF--IYR 706
              P G+      N VCLL K+LYGLKQAP+ W ++F +++  I F  S  D   +  +  
Sbjct: 966  SPPEGYESMFKANEVCLLNKALYGLKQAPKQWNEKFDNFMKEICFVKSAYDSCAYTKVLP 1025

Query: 707  KGTAMAYILLYVDDIILTASSDALRVTIISLLSTEFAMKDLGSLHYFLGIAVTHH--TGG 764
             G+ M Y+L+YVDDI++ + +      + + L   F MKDLG+    LG+ +      G 
Sbjct: 1026 DGSVM-YLLIYVDDILVASKNKEAITALKANLGMRFEMKDLGAAKKILGMEIIRDRTLGV 1084

Query: 765  LFLSQRKYAAEIIERAGMAACKSSSTPVD--------TKPKLSANSSAPHADPSHYRSLA 816
            L+LSQ  Y  +I+E   MA  K + TP+         T+ KL  +     + P  Y S  
Sbjct: 1085 LWLSQEGYLNKILETYNMAEAKPAMTPLGAHFKFQAATEQKLIRDEDFMKSVP--YSSAV 1142

Query: 817  GALQY-LTFTRPDIAYAVQQVCLFMHDPREEHMHALKRIVRYIQGTLDHGLHLYPSSTST 875
            G++ Y +  TRPD+AY V  +  FM  P +EH   +K ++RYI+GTL   L    SS+ +
Sbjct: 1143 GSIMYAMLGTRPDLAYPVGIISRFMSQPIKEHWLGVKWVLRYIKGTLKTRLCYKKSSSFS 1202

Query: 876  LISYTDADWGGCPDTRRSTSGYCVFLGDNLISWSAKRQATLSRSSAEAEYRGVANVVSES 935
            ++ Y DAD+    D RRS +G    LG N ISW +  Q  +++S+ E+EY  +   V E+
Sbjct: 1203 IVGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQSTTESEYMSLTEAVKEA 1262

Query: 936  CWLRNLLLELHCPIRKASLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARGEVR 995
             WL+ LL +     +K+  ++CD+ SAI LS N V H+RTKHI++  H +RE ++ G V 
Sbjct: 1263 IWLKGLLKDFGYE-QKSVEIFCDSQSAIALSKNNVHHERTKHIDVKYHFIREIISDGTVE 1321

Query: 996  VLHVPSRYQIADIFTKGLPLVLFEDFRNNLSVR 1028
            VL + +    ADIFTK L +  F+   N L V+
Sbjct: 1322 VLKISTEKNPADIFTKVLAVSKFQAALNLLRVK 1354


>At2g14930 pseudogene
          Length = 1149

 Score =  509 bits (1312), Expect = e-144
 Identities = 298/841 (35%), Positives = 441/841 (52%), Gaps = 37/841 (4%)

Query: 1    MTSEQGNLSSYFNLSNNRGIIVGNGHSIPIRGYSHTNLSFPNPPLTLKNVLHSPQLIKNL 60
            +T+    L        N  ++  +G+ +PI      NL   +  L LK+VL  P + K+L
Sbjct: 324  ITNNSSRLQQMQPYLGNDTVMASDGNFLPITHIGSANLPSTSGNLPLKDVLVCPNIAKSL 383

Query: 61   VSVRKFTTDNSVSVEFDPFGFSVKDFQTGMRLMRCESRGD-LYPITTS--QAISPSTFAA 117
            +SV K T D   S  FD  G  VKD  T   L +  S  + LY +     Q    +    
Sbjct: 384  LSVSKLTKDYPCSFTFDADGVLVKDKATCKVLTKGSSTSEGLYKLENPKFQMFYSTRQVK 443

Query: 118  LAPSLWHARLGHPGAPVVDSLRKNKFIECNRASGSHICHSCSLGKHIKLPFVSSNSCTIM 177
                +WH RLGHP   V+  L   K I+ N+++ S +C SC LGK  +LPF++S+     
Sbjct: 444  ATDEVWHMRLGHPNPQVLQLLANKKAIQINKST-SKMCESCRLGKSSRLPFIASDFIASR 502

Query: 178  PFDIIHSDIW-TSPVLSSSGHRYYVLFVDDYSNFLWTFPLSKKSQVFSIFLSFRTFIRTQ 236
            P + +H D+W  +PV S  G +YYV+F+D+ S F W +PL  KS   S+F+ F++F+   
Sbjct: 503  PLERVHCDLWGPAPVSSIQGFQYYVIFIDNRSRFCWFYPLKHKSDFCSLFMKFQSFVENL 562

Query: 237  FEREVKNIQCDNGKEFDNRHFWEFCKENGVAFRLSCPHTSSQNGKAERKIRTINNIIRTL 296
             + ++   Q D G EF +  F +  +E+G+   +SCPHT  QNG AERK R +     TL
Sbjct: 563  LQTKIGTFQSDGGGEFTSNRFLQHLQESGIQHYISCPHTPQQNGLAERKHRQLTERGLTL 622

Query: 297  LVHASLPPSFWHHALQMATYLINILPNKQL-AYQSPLKILYQKEPSYSHLRVFGCLCYPL 355
            +  +  P  FW  A   A +L N+LP   L +  +P ++L+ K P YS LR FGC C+P 
Sbjct: 623  MFQSKAPQRFWVEAFFTANFLSNLLPTSALDSSTTPYQVLFGKAPDYSALRTFGCACFPT 682

Query: 356  FPSTTINKLQARSTPCVFLGYPSNHRSYKCYDLSSRKIIISRHVIFDETQFPFAKLHNPQ 415
              +   NK   RS  C+FLGY   ++ Y+C+   + ++ +SRHV+FDE+ FPF   +   
Sbjct: 683  LRAYARNKFDPRSLKCIFLGYTEKYKGYRCFFPPTNRVYLSRHVLFDESSFPFIDTYT-- 740

Query: 416  PYTYGFMDDGPSPYVIHHLTSQPSLGQPAQHDLP---NTQPTTQPTTPEEQHAHSPPSSS 472
                      P+P     L S PS   P ++D     N+  +    T ++          
Sbjct: 741  ----SLQHPSPTPMFDAWLKSFPSSSSPLENDQTAGFNSGASVPVITAQQTQPILSLKDG 796

Query: 473  PN----PSPSTTATPSPPYQPTPISVPKPVTRSQHGIFKPKRQLNLNT--------SVPR 520
            PN        T ++ +   +  PI V    T S     K    L++ +        S   
Sbjct: 797  PNILLPEGEITVSSNNQDIEDEPICVTPLQTLSSEDNAKSSETLSMGSEECSECTASFDL 856

Query: 521  SPLPRNPVSALRDPNWKMAMDDEFNALIKNKTWELVPRPPDVNVIRSMWIFTHKEK--SD 578
             P+  N +S+           D+  + I     E    P    + + +     + K   D
Sbjct: 857  DPIGNNALSS-------SPRHDQLTSSIPRAATEST-HPMTTRLKKGIIKLNQRVKLNVD 908

Query: 579  GVFERYKARLVGDGKTQQVGVDCGETFSPVVKPATIRTVLSLALSKAWSIHQLDVKNAFL 638
            G  ++YKARLV  G  Q+ G+D  ET+SPVV+ AT+R VL L+    W + Q+DVKN FL
Sbjct: 909  GSLDKYKARLVAQGFKQEEGIDYLETYSPVVRSATVRAVLHLSTIMNWELKQMDVKNGFL 968

Query: 639  HGELKETVYMHQPMGFRDPNLPNHVCLLKKSLYGLKQAPRAWYKRFADYVSTIGFSHSTS 698
            HG+L ETVYM QP GF D   P+HVCLL K+LYGLKQAPRAW+ +F+ ++ + GF  S S
Sbjct: 969  HGDLTETVYMKQPAGFIDKAHPDHVCLLHKALYGLKQAPRAWFDKFSKFLLSFGFVCSMS 1028

Query: 699  DHSLFIYRKGTAMAYILLYVDDIILTASSDALRVTIISLLSTEFAMKDLGSLHYFLGIAV 758
            D SLF+  K   +  +LLYVDD+++T +S  L  +++S L+ +F MKDLG L YFLGI  
Sbjct: 1029 DPSLFVCVKNKDVIMLLLYVDDMVITGNSSKLLSSLLSELNKQFKMKDLGRLSYFLGIQA 1088

Query: 759  THHTGGLFLSQRKYAAEIIERAGMAACKSSSTPVDTKPKLSANSSAPHADPSHYRSLAGA 818
              H+ GLFLSQ+KYA +++  A M+ C   +TP+  +P+ + N +    +PS++RSLAG 
Sbjct: 1089 QFHSQGLFLSQQKYAEDLLATAAMSNCSPVATPLPLQPERTPNQTELFDNPSYFRSLAGK 1148

Query: 819  L 819
            L
Sbjct: 1149 L 1149


>At4g27200 putative protein
          Length = 819

 Score =  501 bits (1290), Expect = e-142
 Identities = 293/739 (39%), Positives = 402/739 (53%), Gaps = 58/739 (7%)

Query: 334  ILYQKEPSYSHLRVFGCLCYPLFPSTTINKLQARSTPCVFLGYPSNHRSYKCYDLSSRKI 393
            +L +K  S S  R+ G  C+P       NK    S  CVFLGY   ++ Y+C    + ++
Sbjct: 1    MLVRKRHSTSSWRI-GSACFPTLRDYAENKFNPCSLKCVFLGYNEKYKGYRCLYPPTGRL 59

Query: 394  IISRHVIFDETQFPFAKLH---NPQPYT-----YGFMDDGPSPYVIHHLTSQ-------- 437
             ISRHVIFDE+ +PF+  +   +PQP T     +    D P+P      +S+        
Sbjct: 60   YISRHVIFDESVYPFSHTYKHLHPQPRTPLLAAWLRSSDSPAPSTSTSPSSRSPLFTSAD 119

Query: 438  -PSLGQPAQHDLPNTQP----------TTQPTTPEEQH-------------AHSPPSSSP 473
             P L Q     LP   P          TTQ +   +               +HS  + S 
Sbjct: 120  FPPLPQRKTPLLPTLVPISSVSHASNITTQQSPDFDSERTTDFDSASIGDSSHSSQAGSD 179

Query: 474  NPSPSTTATPSPPYQPTPISVPKPVTRSQHGIFKPKRQLNLNTSVPRSPLPRNPVSALRD 533
            +      A+ +    P   +V   VTR++ GI KP  +    +     P P+   +AL+ 
Sbjct: 180  SEETIQQASVNVHQTPASTNVHPMVTRAKVGISKPNPRYVFLSHKVSYPEPKTVTAALKH 239

Query: 534  PNWKMAMDDEFNALIKNKTWELVPRPPDVNVIRSMWIFTHKEKSDGVFERYKARLVGDGK 593
            P W  AM +E     + +TW LVP   D++V+ S W+F  K  +DG   + KAR+V  G 
Sbjct: 240  PGWTGAMTEEIGNCSETQTWSLVPYKSDMHVLGSKWVFRTKLHADGTLNKLKARIVAKGF 299

Query: 594  TQQVGVDCGETFSPVVKPATIRTVLSLALSKAWSIHQLDVKNAFLHGELKETVYMHQPMG 653
             Q+ G+D  ET+SPVV+  T+R VL LA +  W I Q+DVKNAFLHG+LKETVYM QP  
Sbjct: 300  LQEEGIDYLETYSPVVRTPTVRLVLHLATALNWDIKQMDVKNAFLHGDLKETVYMTQPAA 359

Query: 654  FRDPNLPNHVCLLKKSLYGLKQAPRAWYKRFADYVSTIGFSHSTSDHSLFIYRKGTAMAY 713
             RD     HVCLL KS+YGLKQ+PRAW+ +F+ ++   GF    SD SLFIY     +  
Sbjct: 360  NRD-----HVCLLHKSIYGLKQSPRAWFDKFSTFLLEFGFFCRKSDPSLFIYAHNNNLIL 414

Query: 714  ILLYVDDIILTASSDALRVTIISLLSTEFAMKDLGSLHY-FLGIAVTHHTGGLFLSQRKY 772
            +LL          S  L  ++++ L+ EF M D+G     FLGI V     GLF+SQ+KY
Sbjct: 415  LLL----------SQTL-TSLLAALNKEFRMTDMGQHSLTFLGIQVQRQQNGLFMSQQKY 463

Query: 773  AAEIIERAGMAACKSSSTPVDTKPKLSANSSAPHADPSHYRSLAGALQYLTFTRPDIAYA 832
            A +++  A M  C    TP+  +     +     +DP+++RS+AG LQYLT TRPDI +A
Sbjct: 464  AEDLLIAASMEHCTPLPTPLPVQLDRVPHQEELFSDPTYFRSIAGKLQYLTLTRPDIQFA 523

Query: 833  VQQVCLFMHDPREEHMHALKRIVRYIQGTLDHGLHLYPSSTSTLISYTDADWGGCPDTRR 892
            V  VC  MH P     H LKRI+RYI+GT+  G+     S + L +Y+D+DWG C  TRR
Sbjct: 524  VNFVCQKMHQPTISDFHLLKRILRYIKGTITMGISYSRDSPTLLQAYSDSDWGNCKQTRR 583

Query: 893  STSGYCVFLGDNLISWSAKRQATLSRSSAEAEYRGVANVVSESCWLRNLLLELHCPIRKA 952
            S  G C F+G NL+SWS+K+  T+SRSS EAEY+ +++  SE  WL  LL EL  P+   
Sbjct: 584  SVGGLCTFMGTNLVSWSSKKHPTVSRSSTEAEYKSLSDAASEILWLSTLLRELRIPLPDT 643

Query: 953  SLVYCDNVSAIYLSGNPVQHQRTKHIEMDIHSVREKVARGEVRVLHVPSRYQIADIFTKG 1012
              ++CDN+SA+YL+ NP  H RTKH ++D H VRE+VA   + V H+P   QIADIFTK 
Sbjct: 644  PELFCDNLSAVYLTANPAFHARTKHFDIDFHFVRERVALKALVVKHIPGSEQIADIFTKS 703

Query: 1013 LPLVLFEDFRNNLSVRQPP 1031
            LP   F   R  L V  PP
Sbjct: 704  LPYEAFIHLRGKLGVTLPP 722


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.320    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,991,207
Number of Sequences: 26719
Number of extensions: 1178725
Number of successful extensions: 9961
Number of sequences better than 10.0: 383
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 4571
Number of HSP's gapped (non-prelim): 1903
length of query: 1038
length of database: 11,318,596
effective HSP length: 109
effective length of query: 929
effective length of database: 8,406,225
effective search space: 7809383025
effective search space used: 7809383025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)