BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146590.9 - phase: 0 /pseudo
(183 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g33340 putative protein 154 3e-38
At1g64830 hypothetical protein 153 4e-38
At1g31450 hypothetical protein 128 1e-30
At2g03200 putative chloroplast nucleoid DNA binding protein 102 9e-23
At2g28010 putative chloroplast nucleoid DNA binding protein 99 2e-21
At5g10760 nucleoid DNA-binding protein cnd41 - like protein 95 2e-20
At3g61820 unknown protein 95 2e-20
At2g28040 chloroplast nucleoid DNA binding like protein 94 4e-20
At1g01300 chloroplast nucleoid DNA binding protein like 89 1e-18
At2g28220 putative chloroplast nucleoid DNA binding protein 88 2e-18
At3g18490 chloroplast nucleoid DNA-binding protein like 87 5e-18
At2g28030 putative chloroplast nucleoid DNA binding protein 85 2e-17
At3g20015 putative nucleoid chloroplast DNA-binding protein 80 6e-16
At5g10770 nucleoid DNA-binding protein cnd41 - like protein 77 7e-15
At1g25510 unknown protein 77 7e-15
At5g33350 putative protein 76 1e-14
At4g30040 putative protein 73 7e-14
At4g30030 putative protein 72 2e-13
At1g79720 unknown protein 70 5e-13
At3g59080 unknown protein 70 8e-13
>At5g33340 putative protein
Length = 437
Score = 154 bits (389), Expect = 3e-38
Identities = 78/168 (46%), Positives = 99/168 (58%), Gaps = 6/168 (3%)
Query: 5 SLLILFYFSLCFIISLSHALNN-----GFSVELIHRDSSKSPLYQPTQNKYQHIVNAARR 59
SL SLC + SL + N GF+ +LIHRDS KSP Y P + Q + NA R
Sbjct: 3 SLFSSVLLSLCLLSSLFLSNANAKPKLGFTADLIHRDSPKSPFYNPMETSSQRLRNAIHR 62
Query: 60 SINRANHFYKTALTNTPQSTVIPDHGEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCK 119
S+NR HF + T PQ + + GEYLM S+GTPPF + IADTGSD++W QC PC
Sbjct: 63 SVNRVFHFTEKDNTPQPQIDLTSNSGEYLMNVSIGTPPFPIMAIADTGSDLLWTQCAPCD 122
Query: 120 ECYNQTTPKFKPSKSSTYKNIPCSSDLCKSGQQGAVC-TDQNFCEYSI 166
+CY Q P F P SSTYK++ CSS C + + A C T+ N C YS+
Sbjct: 123 DCYTQVDPLFDPKTSSTYKDVSCSSSQCTALENQASCSTNDNTCSYSL 170
>At1g64830 hypothetical protein
Length = 431
Score = 153 bits (387), Expect = 4e-38
Identities = 71/163 (43%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Query: 5 SLLILFYFSLCFIISLSHALNNGFSVELIHRDSSKSPLYQPTQNKYQHIVNAARRSINRA 64
SL+ SL + +++ +GF+++LIHRDS KSP Y + Q + NA RRS
Sbjct: 3 SLIFATLLSLLLLSNVNAYPKDGFTIDLIHRDSPKSPFYNSAETSSQRMRNAIRRSARST 62
Query: 65 NHFYKT-ALTNTPQSTVIPDHGEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECYN 123
F A N+PQS + + GEYLM S+GTPP + IADTGSD++W QC PC++CY
Sbjct: 63 LQFSNDDASPNSPQSFITSNRGEYLMNISIGTPPVPILAIADTGSDLIWTQCNPCEDCYQ 122
Query: 124 QTTPKFKPSKSSTYKNIPCSSDLCKSGQQGAVCTDQNFCEYSI 166
QT+P F P +SSTY+ + CSS C++ + + TD+N C Y+I
Sbjct: 123 QTSPLFDPKESSTYRKVSCSSSQCRALEDASCSTDENTCSYTI 165
>At1g31450 hypothetical protein
Length = 445
Score = 128 bits (322), Expect = 1e-30
Identities = 72/164 (43%), Positives = 95/164 (57%), Gaps = 11/164 (6%)
Query: 4 CSLLILFYFSLCFIISLSHALNNGFSVELIHRDSSKSPLYQPTQNKYQHIVNAARRSINR 63
CSLL + +F S S A +VELIHRDS SPLY P + A RSI+R
Sbjct: 9 CSLLAISFF----FASNSSANRENLTVELIHRDSPHSPLYNPHHTVSDRLNAAFLRSISR 64
Query: 64 ANHFY-KTALTNTPQSTVIPDHGEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECY 122
+ F KT L QS +I + GEY M+ S+GTPP K++ IADTGSD+ W+QC+PC++CY
Sbjct: 65 SRRFTTKTDL----QSGLISNGGEYFMSISIGTPPSKVFAIADTGSDLTWVQCKPCQQCY 120
Query: 123 NQTTPKFKPSKSSTYKNIPCSSDLCK--SGQQGAVCTDQNFCEY 164
Q +P F KSSTYK C S C+ S + ++ C+Y
Sbjct: 121 KQNSPLFDKKKSSTYKTESCDSKTCQALSEHEEGCDESKDICKY 164
>At2g03200 putative chloroplast nucleoid DNA binding protein
Length = 461
Score = 102 bits (255), Expect = 9e-23
Identities = 56/145 (38%), Positives = 76/145 (51%), Gaps = 9/145 (6%)
Query: 26 NGFSVELIHRDSSKSPLYQPTQNKYQHIVNAARRSINRANHFYKTALTNTPQST---VIP 82
+GF + L H DS K+ K Q +N +NR A+ + P T P
Sbjct: 43 SGFRLSLRHVDSGKN---LTKIQKIQRGINRGFHRLNRLGAVAVLAVASKPDDTNNIKAP 99
Query: 83 DHG---EYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECYNQTTPKFKPSKSSTYKN 139
HG E+LM S+G P K I DTGSD++W QC+PC EC++Q TP F P KSS+Y
Sbjct: 100 THGGSGEFLMELSIGNPAVKYSAIVDTGSDLIWTQCKPCTECFDQPTPIFDPEKSSSYSK 159
Query: 140 IPCSSDLCKSGQQGAVCTDQNFCEY 164
+ CSS LC + + D++ CEY
Sbjct: 160 VGCSSGLCNALPRSNCNEDKDACEY 184
>At2g28010 putative chloroplast nucleoid DNA binding protein
Length = 396
Score = 98.6 bits (244), Expect = 2e-21
Identities = 51/145 (35%), Positives = 73/145 (50%), Gaps = 24/145 (16%)
Query: 3 TCSLLILFYFSLCFIISLSHALNNGFSVELIHRDSSKSPLYQPTQNKYQHIVNAARRSIN 62
T +++ SLCF+ + + + +GF+++LIHR S+ S TQ+
Sbjct: 5 TTIIVLFLQISLCFLFTTTASPPHGFTMDLIHRRSNASSRVSNTQSG------------- 51
Query: 63 RANHFYKTALTNTPQSTVIPDHGEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECY 122
++P + + D+ YLM VGTPPF++ I DTGS+I W QC PC CY
Sbjct: 52 -----------SSPYANTVFDNSVYLMKLQVGTPPFEIQAIIDTGSEITWTQCLPCVHCY 100
Query: 123 NQTTPKFKPSKSSTYKNIPCSSDLC 147
Q P F PSKSST+K C C
Sbjct: 101 EQNAPIFDPSKSSTFKEKRCDGHSC 125
>At5g10760 nucleoid DNA-binding protein cnd41 - like protein
Length = 464
Score = 95.1 bits (235), Expect = 2e-20
Identities = 56/158 (35%), Positives = 81/158 (50%), Gaps = 15/158 (9%)
Query: 21 SHALNNGFSVELIHRDSSKSPLYQPTQNKYQHIVNA---------ARRSINRANHFYKTA 71
S A N S+ ++H + S L + + I+ ++ S N AN +
Sbjct: 56 SKASNTKSSLRVVHMHGACSHLSSDARVDHDEIIRRDQARVESIYSKLSKNSANEVSEAK 115
Query: 72 LTNTP-QSTVIPDHGEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPC-KECYNQTTPKF 129
T P +S + G Y++T +GTP L + DTGSD+ W QCEPC CY+Q PKF
Sbjct: 116 STELPAKSGITLGSGNYIVTIGIGTPKHDLSLVFDTGSDLTWTQCEPCLGSCYSQKEPKF 175
Query: 130 KPSKSSTYKNIPCSSDLCKSGQQGAVCTDQNFCEYSIL 167
PS SSTY+N+ CSS +C+ + C+ N C YSI+
Sbjct: 176 NPSSSSTYQNVSCSSPMCEDAES---CSASN-CVYSIV 209
>At3g61820 unknown protein
Length = 483
Score = 94.7 bits (234), Expect = 2e-20
Identities = 46/114 (40%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 55 NAARRSINRANHFYKTALTNTPQSTVIPDHGEYLMTYSVGTPPFKLYGIADTGSDIVWLQ 114
NA +R+ A F ++ Q + GEY M VGTP +Y + DTGSD+VWLQ
Sbjct: 108 NATKRTPRTAGGFSGAVISGLSQGS-----GEYFMRLGVGTPATNVYMVLDTGSDVVWLQ 162
Query: 115 CEPCKECYNQTTPKFKPSKSSTYKNIPCSSDLCKSGQQGAVCTDQ--NFCEYSI 166
C PCK CYNQT F P KS T+ +PC S LC+ + C + C Y +
Sbjct: 163 CSPCKACYNQTDAIFDPKKSKTFATVPCGSRLCRRLDDSSECVTRRSKTCLYQV 216
>At2g28040 chloroplast nucleoid DNA binding like protein
Length = 395
Score = 94.0 bits (232), Expect = 4e-20
Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 24/142 (16%)
Query: 3 TCSLLILFYFSLCFIISLSHALNNGFSVELIHRDSSKSPLYQPTQNKYQHIVNAARRSIN 62
T + I F+I+ + + GF+++LIHR S+ S
Sbjct: 5 TTMIAIFLQIITYFLITTTASSPQGFTIDLIHRRSNAS---------------------- 42
Query: 63 RANHFYKTALTNTPQSTVIPDHGEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECY 122
++ + T L +P + + D EYLM +GTPPF++ + DTGS+ +W QC PC CY
Sbjct: 43 -SSRVFNTQL-GSPYADTVFDTYEYLMKLQIGTPPFEIEAVLDTGSEHIWTQCLPCVHCY 100
Query: 123 NQTTPKFKPSKSSTYKNIPCSS 144
NQT P F PSKSST+K I C +
Sbjct: 101 NQTAPIFDPSKSSTFKEIRCDT 122
>At1g01300 chloroplast nucleoid DNA binding protein like
Length = 485
Score = 89.4 bits (220), Expect = 1e-18
Identities = 40/82 (48%), Positives = 48/82 (57%)
Query: 85 GEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECYNQTTPKFKPSKSSTYKNIPCSS 144
GEY VGTP +Y + DTGSDIVWLQC PC+ CY+Q+ P F P KS TY IPCSS
Sbjct: 140 GEYFTRLGVGTPARYVYMVLDTGSDIVWLQCAPCRRCYSQSDPIFDPRKSKTYATIPCSS 199
Query: 145 DLCKSGQQGAVCTDQNFCEYSI 166
C+ T + C Y +
Sbjct: 200 PHCRRLDSAGCNTRRKTCLYQV 221
>At2g28220 putative chloroplast nucleoid DNA binding protein
Length = 756
Score = 88.2 bits (217), Expect = 2e-18
Identities = 46/145 (31%), Positives = 74/145 (50%), Gaps = 22/145 (15%)
Query: 3 TCSLLILFYFSLCFIISLSHALNNGFSVELIHRDSSKSPLYQPTQNKYQHIVNAARRSIN 62
T +++ CF+ + + + +GF+++LI R S+ S ++ ++N+ Q
Sbjct: 20 TTMIVLFLQIITCFLFTTTVSSPHGFTIDLIQRRSNSSS-FRLSKNQLQGA--------- 69
Query: 63 RANHFYKTALTNTPQSTVIPDHGEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECY 122
+P + + D+ YLM VGTPPF++ DTGSD++W QC PC +CY
Sbjct: 70 ------------SPYADTLFDYNIYLMKLQVGTPPFEIAAEIDTGSDLIWTQCMPCPDCY 117
Query: 123 NQTTPKFKPSKSSTYKNIPCSSDLC 147
+Q P F PSKSST+ C C
Sbjct: 118 SQFDPIFDPSKSSTFNEQRCHGKSC 142
Score = 83.6 bits (205), Expect = 6e-17
Identities = 35/73 (47%), Positives = 47/73 (63%)
Query: 75 TPQSTVIPDHGEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECYNQTTPKFKPSKS 134
+P + + D+ YLM VGTPPF++ DTGSDI+W QC PC CY+Q P F PSKS
Sbjct: 409 SPYADTLYDYSIYLMKLQVGTPPFEIVAEIDTGSDIIWTQCMPCPNCYSQFAPIFDPSKS 468
Query: 135 STYKNIPCSSDLC 147
ST++ C+ + C
Sbjct: 469 STFREQRCNGNSC 481
>At3g18490 chloroplast nucleoid DNA-binding protein like
Length = 500
Score = 87.0 bits (214), Expect = 5e-18
Identities = 55/170 (32%), Positives = 77/170 (44%), Gaps = 10/170 (5%)
Query: 2 NTCSLLILFYFSLCFIISLSHALNNGFSVELIHRDSSKSPLYQPTQNKYQHIVNAARRS- 60
N+ S L L S ++ H ++ + RDSS+ K + V RS
Sbjct: 75 NSSSPLSLELHSRDTFVASQHKDYKSLTLSRLERDSSR---VAGIVAKIRFAVEGVDRSD 131
Query: 61 ----INRANHFYKTALTNTPQSTVIPDHGEYLMTYSVGTPPFKLYGIADTGSDIVWLQCE 116
N + LT S GEY VGTP ++Y + DTGSD+ W+QCE
Sbjct: 132 LKPVYNEDTRYQTEDLTTPVVSGASQGSGEYFSRIGVGTPAKEMYLVLDTGSDVNWIQCE 191
Query: 117 PCKECYNQTTPKFKPSKSSTYKNIPCSSDLCKSGQQGAVCTDQNFCEYSI 166
PC +CY Q+ P F P+ SSTYK++ CS+ C + A N C Y +
Sbjct: 192 PCADCYQQSDPVFNPTSSSTYKSLTCSAPQCSLLETSA--CRSNKCLYQV 239
>At2g28030 putative chloroplast nucleoid DNA binding protein
Length = 392
Score = 84.7 bits (208), Expect = 2e-17
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 22/142 (15%)
Query: 6 LLILFYFSLCFIISLSHALNNGFSVELIHRDSSKSPLYQPTQNKYQHIVNAARRSINRAN 65
+++ C + + + + +GF+++LI R S+ S ++R S N+
Sbjct: 2 IVLFLQIITCSLFTTTASSPHGFTIDLIQRRSNSS---------------SSRLSKNQLQ 46
Query: 66 HFYKTALTNTPQSTVIPDHGEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECYNQT 125
+P + + D+ YLM VGTPPF++ DTGSD++W QC PC CY+Q
Sbjct: 47 GA-------SPYADTLFDYNIYLMKLQVGTPPFEIEAEIDTGSDLIWTQCMPCTNCYSQY 99
Query: 126 TPKFKPSKSSTYKNIPCSSDLC 147
P F PS SST+K C+ + C
Sbjct: 100 APIFDPSNSSTFKEKRCNGNSC 121
>At3g20015 putative nucleoid chloroplast DNA-binding protein
Length = 386
Score = 80.1 bits (196), Expect = 6e-16
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 85 GEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECYNQTTPKFKPSKSSTYKNIPCSS 144
GEY + VG+PP Y + D+GSD+VW+QC+PCK CY Q+ P F P+KS +Y + C S
Sbjct: 45 GEYFVRIGVGSPPRDQYMVIDSGSDMVWVQCQPCKLCYKQSDPVFDPAKSGSYTGVSCGS 104
Query: 145 DLC 147
+C
Sbjct: 105 SVC 107
>At5g10770 nucleoid DNA-binding protein cnd41 - like protein
Length = 474
Score = 76.6 bits (187), Expect = 7e-15
Identities = 41/88 (46%), Positives = 53/88 (59%), Gaps = 8/88 (9%)
Query: 85 GEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPC-KECYNQTTPKFKPSKSSTYKNIPCS 143
G Y++T +GTP L I DTGSD+ W QC+PC + CY+Q P F PSKS++Y N+ CS
Sbjct: 130 GNYIVTVGLGTPKNDLSLIFDTGSDLTWTQCQPCVRTCYDQKEPIFNPSKSTSYYNVSCS 189
Query: 144 SDLCKS-----GQQGAVCTDQNFCEYSI 166
S C S G G+ C+ N C Y I
Sbjct: 190 SAACGSLSSATGNAGS-CSASN-CIYGI 215
>At1g25510 unknown protein
Length = 483
Score = 76.6 bits (187), Expect = 7e-15
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 85 GEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECYNQTTPKFKPSKSSTYKNIPCSS 144
GEY +G P ++Y + DTGSD+ WLQC PC +CY+QT P F+PS SS+Y+ + C +
Sbjct: 146 GEYFTRVGIGKPAREVYMVLDTGSDVNWLQCTPCADCYHQTEPIFEPSSSSSYEPLSCDT 205
Query: 145 DLCKS 149
C +
Sbjct: 206 PQCNA 210
>At5g33350 putative protein
Length = 293
Score = 75.9 bits (185), Expect = 1e-14
Identities = 31/64 (48%), Positives = 43/64 (66%), Gaps = 1/64 (1%)
Query: 104 ADTGSDIVWLQCEPCKECYNQTTPKFKPSKSSTYKNIPCSSDLCKSGQQGAVCTDQ-NFC 162
ADTGSD++W QC+PC +CY Q P F P SSTYK++ C S C++ + A C+ + N C
Sbjct: 4 ADTGSDLIWTQCKPCDDCYTQVDPLFDPKASSTYKDVSCPSSQCRALKDDASCSKKDNTC 63
Query: 163 EYSI 166
YS+
Sbjct: 64 SYSM 67
>At4g30040 putative protein
Length = 427
Score = 73.2 bits (178), Expect = 7e-14
Identities = 55/187 (29%), Positives = 83/187 (43%), Gaps = 26/187 (13%)
Query: 8 ILFYFSLCFIISLSH-ALNNGFSVELIHRDSSKSPLYQPTQNKYQHIVNAARRSINRANH 66
+ F LCF IS+ H + + + L+H Y K H+ + S+ R +
Sbjct: 9 LFFLIILCFSISVVHLSASPTLVLNLVHS-------YHIYSRKPPHVYHIKEASVERLEY 61
Query: 67 FYKTALTN------TPQSTVIPDHGEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKE 120
K T +P +IP +L+ S+G+PP DT SD++W+QC PC
Sbjct: 62 L-KAKTTGDIIAHLSPNVPIIPQ--AFLVNISIGSPPITQLLHMDTASDLLWIQCLPCIN 118
Query: 121 CYNQTTPKFKPSKSSTYKNIPCSSDLCKSGQQGAVCTDQN----FCEYSILMVIIHNRKE 176
CY Q+ P F PS+S T++N + C++ Q N CEYS+ V K
Sbjct: 119 CYAQSLPIFDPSRSYTHRN-----ETCRTSQYSMPSLKFNANTRSCEYSMRYVDDTGSKG 173
Query: 177 ILVLILL 183
IL +L
Sbjct: 174 ILAREML 180
>At4g30030 putative protein
Length = 424
Score = 72.0 bits (175), Expect = 2e-13
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 79 TVIPDHGEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECYNQTTPKFKPSKSSTYK 138
T IP+ +L S+G PP + DTGSD+ W+ C PCK CY QT P F PS+SSTY+
Sbjct: 70 TPIPNPAAFLANISIGNPPVPQLLLIDTGSDLTWIHCLPCK-CYPQTIPFFHPSRSSTYR 128
Query: 139 NIPCSS 144
N C S
Sbjct: 129 NASCVS 134
>At1g79720 unknown protein
Length = 484
Score = 70.5 bits (171), Expect = 5e-13
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 17/92 (18%)
Query: 87 YLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECYNQTTPKFKPSKSSTYKNIPCSSDL 146
Y++T +G L I DTGSD+ W+QC+PC+ CYNQ P + PS SS+YK + C+S
Sbjct: 135 YIVTVELGGKNMSL--IVDTGSDLTWVQCQPCRSCYNQQGPLYDPSVSSSYKTVFCNSST 192
Query: 147 CK------------SGQQGAVCTDQNFCEYSI 166
C+ G G V T CEY +
Sbjct: 193 CQDLVAATSNSGPCGGNNGVVKTP---CEYVV 221
>At3g59080 unknown protein
Length = 535
Score = 69.7 bits (169), Expect = 8e-13
Identities = 32/76 (42%), Positives = 43/76 (56%)
Query: 72 LTNTPQSTVIPDHGEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCKECYNQTTPKFKP 131
L T +S + GEY M VG+PP I DTGSD+ W+QC PC +C+ Q + P
Sbjct: 155 LVATLESGMTLGSGEYFMDVLVGSPPKHFSLILDTGSDLNWIQCLPCYDCFQQNGAFYDP 214
Query: 132 SKSSTYKNIPCSSDLC 147
S++YKNI C+ C
Sbjct: 215 KASASYKNITCNDQRC 230
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.322 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,293,620
Number of Sequences: 26719
Number of extensions: 179938
Number of successful extensions: 513
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 69
length of query: 183
length of database: 11,318,596
effective HSP length: 93
effective length of query: 90
effective length of database: 8,833,729
effective search space: 795035610
effective search space used: 795035610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Medicago: description of AC146590.9