BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146588.1 - phase: 0 /pseudo
(191 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11970 hypothetical protein 46 1e-05
At1g36590 hypothetical protein 46 1e-05
At1g35370 hypothetical protein 45 2e-05
At2g10780 pseudogene 44 5e-05
At2g07660 putative retroelement pol polyprotein 44 5e-05
At4g10580 putative reverse-transcriptase -like protein 43 9e-05
At2g14650 putative retroelement pol polyprotein 43 9e-05
At2g04670 putative retroelement pol polyprotein 43 9e-05
At2g05610 putative retroelement pol polyprotein 42 2e-04
At4g04230 putative transposon protein 42 3e-04
At2g06890 putative retroelement integrase 42 3e-04
At1g36120 putative reverse transcriptase gb|AAD22339.1 40 0.001
At2g06170 putative Ty3-gypsy-like retroelement pol polyprotein 39 0.002
At4g08100 putative polyprotein 38 0.004
At2g14640 putative retroelement pol polyprotein 35 0.019
At2g26270 hypothetical protein 27 5.0
>At3g11970 hypothetical protein
Length = 1499
Score = 46.2 bits (108), Expect = 1e-05
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 2 IDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRT 41
I+DLMD L GA + SKI+ R+ YH ++ +D+ KTAF+T
Sbjct: 674 IEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKT 713
>At1g36590 hypothetical protein
Length = 1499
Score = 46.2 bits (108), Expect = 1e-05
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 2 IDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRT 41
I+DLMD L GA + SKI+ R+ YH ++ +D+ KTAF+T
Sbjct: 674 IEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKT 713
>At1g35370 hypothetical protein
Length = 1447
Score = 45.4 bits (106), Expect = 2e-05
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 2 IDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRT 41
I+DLMD L G+ V SKI+ R+ YH ++ +D+ KTAF+T
Sbjct: 653 IEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKT 692
>At2g10780 pseudogene
Length = 1611
Score = 43.9 bits (102), Expect = 5e-05
Identities = 23/42 (54%), Positives = 28/42 (65%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RID+LMD L GA SKI+ S YH I + D+ KTAFRT+
Sbjct: 731 RIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTR 772
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 43.9 bits (102), Expect = 5e-05
Identities = 23/42 (54%), Positives = 28/42 (65%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RID+LMD L GA SKI+ S YH I + D+ KTAFRT+
Sbjct: 226 RIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAFRTR 267
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 43.1 bits (100), Expect = 9e-05
Identities = 22/42 (52%), Positives = 27/42 (63%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RID+L+D L GA SKI+ S YH I D+ KTAFRT+
Sbjct: 563 RIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAFRTR 604
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 43.1 bits (100), Expect = 9e-05
Identities = 22/42 (52%), Positives = 27/42 (63%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RID+L+D L GA SKI+ S YH I D+ KTAFRT+
Sbjct: 538 RIDELLDQLRGATCFSKIDLTSGYHLIPIAEADVRKTAFRTR 579
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 43.1 bits (100), Expect = 9e-05
Identities = 22/42 (52%), Positives = 27/42 (63%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RID+L+D L GA SKI+ S YH I D+ KTAFRT+
Sbjct: 589 RIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAFRTR 630
>At2g05610 putative retroelement pol polyprotein
Length = 780
Score = 42.0 bits (97), Expect = 2e-04
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 2 IDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRT 41
I+DLMD L G+ V SKI+ R+ YH ++ D+ KTAF+T
Sbjct: 116 IEDLMDELGGSNVYSKIDLRAGYHQVRMDPLDIHKTAFKT 155
>At4g04230 putative transposon protein
Length = 315
Score = 41.6 bits (96), Expect = 3e-04
Identities = 18/42 (42%), Positives = 30/42 (70%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
R+ D++D L+GA + SK++ RS YH ++ + D KTAF+T+
Sbjct: 173 RLYDMLDELSGAIIFSKVDLRSGYHQVRMREGDEWKTAFKTK 214
>At2g06890 putative retroelement integrase
Length = 1215
Score = 41.6 bits (96), Expect = 3e-04
Identities = 19/42 (45%), Positives = 29/42 (68%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
R+DD++D L G+ + SKI+ +S YH I+ D KTAF+T+
Sbjct: 491 RLDDMLDELHGSSIFSKIDLKSGYHQIRMNEGDEWKTAFKTK 532
>At1g36120 putative reverse transcriptase gb|AAD22339.1
Length = 1235
Score = 39.7 bits (91), Expect = 0.001
Identities = 20/42 (47%), Positives = 25/42 (58%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
RID+L+D L GA SKI+ YH D+ KTAFRT+
Sbjct: 589 RIDELLDQLRGATCFSKIDLTPGYHQFPIAEADVRKTAFRTR 630
>At2g06170 putative Ty3-gypsy-like retroelement pol polyprotein
Length = 587
Score = 38.9 bits (89), Expect = 0.002
Identities = 18/42 (42%), Positives = 30/42 (70%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
++DD++D L+G+ V SKI+ RS YH I+ + D KT F+++
Sbjct: 416 QLDDMLDELSGSKVFSKIDLRSGYHQIRIRPGDEWKTDFKSK 457
>At4g08100 putative polyprotein
Length = 1054
Score = 37.7 bits (86), Expect = 0.004
Identities = 18/42 (42%), Positives = 27/42 (63%)
Query: 1 RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
R+DD +D L G+ + SKI+ +S YH + K D KTA +T+
Sbjct: 544 RLDDTLDKLHGSSIFSKIDLKSGYHQTRMKEGDEWKTAIKTK 585
>At2g14640 putative retroelement pol polyprotein
Length = 945
Score = 35.4 bits (80), Expect = 0.019
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 2 IDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRT 41
+DD++D L GA +K++ + Y ++ D+PK AF+T
Sbjct: 558 VDDMLDELNGAVYFTKLDLTAGYQQVRMHSPDIPKIAFQT 597
>At2g26270 hypothetical protein
Length = 470
Score = 27.3 bits (59), Expect = 5.0
Identities = 21/71 (29%), Positives = 35/71 (48%), Gaps = 9/71 (12%)
Query: 124 PRWLRK*VEYHRRFIKE-----SLQIALLVTRLT--RKGQHMCGIGNAKKIFK--SLKRS 174
P W+ K VE HR+ + + Q+ L++ + + G GN+++ FK SL +
Sbjct: 194 PLWVLKTVEKHRQRLVHMSPDLARQLGLMLENFEDGAANEKISGQGNSQEAFKSRSLSKQ 253
Query: 175 *RRAGVNFIKT 185
R+ VN KT
Sbjct: 254 ERKETVNIAKT 264
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.365 0.164 0.594
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,318,390
Number of Sequences: 26719
Number of extensions: 104070
Number of successful extensions: 515
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 25
length of query: 191
length of database: 11,318,596
effective HSP length: 94
effective length of query: 97
effective length of database: 8,807,010
effective search space: 854279970
effective search space used: 854279970
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 57 (26.6 bits)
Medicago: description of AC146588.1