BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146573.8 + phase: 0 
         (964 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g16870 retrotransposon like protein                                611  e-175
At4g02960 putative polyprotein of LTR transposon                      610  e-175
At1g44510 polyprotein, putative                                       609  e-174
At1g59265 polyprotein, putative                                       602  e-172
At1g58889 polyprotein, putative                                       601  e-172
At1g31210 putative reverse transcriptase                              529  e-150
At4g27210 putative protein                                            485  e-137
At4g10690 retrotransposon like protein                                483  e-136
At1g53810                                                             473  e-133
At2g13940 putative retroelement pol polyprotein                       448  e-126
At4g10990 putative retrotransposon polyprotein                        444  e-124
At4g27200 putative protein                                            439  e-123
At2g23330 putative retroelement pol polyprotein                       436  e-122
At1g70010 hypothetical protein                                        432  e-121
At2g20460 putative retroelement pol polyprotein                       431  e-120
At1g48710 hypothetical protein                                        428  e-120
At4g17450 retrotransposon like protein                                426  e-119
At3g61330 copia-type polyprotein                                      424  e-119
At2g04820 putative retroelement pol polyprotein                       424  e-119
At1g58140 hypothetical protein                                        421  e-117

>At4g16870 retrotransposon like protein
          Length = 1474

 Score =  611 bits (1576), Expect = e-175
 Identities = 340/739 (46%), Positives = 451/739 (61%), Gaps = 94/739 (12%)

Query: 304  DPKTNKIYTSRHVVFHDNHFPYP-----------TINQNAHAANLPI--NISLIP----- 345
            D +  ++YTSRHVVF +  FP+            T  Q++     PI  + S++P     
Sbjct: 731  DVEHKRLYTSRHVVFDEASFPFSNLTSQNSLPTVTFEQSSSPLVTPILSSSSVLPSCLSS 790

Query: 346  PHTIL-SLNPTIPPPQAPNSLMATTPPTP-------------EAILQEAPLSPSTSS--- 388
            P T+L    P +  P +P+S   TT P P               +   +PL  S+SS   
Sbjct: 791  PCTVLHQQQPPVTTPNSPHSSQPTTSPAPLSPHRSTTMDFQVPQVRSSSPLLSSSSSLNS 850

Query: 389  ----GNESSPSP-----------SPTNNSIALTNPPADSNATNHI--------------- 418
                 NE+ P P           +PT+ +     P  + N TN I               
Sbjct: 851  EPTAPNENGPEPEAQSPPIGPLSNPTHEAFIGPLPNPNRNPTNEIEPTPAPHPKPVKPTT 910

Query: 419  ---------------------------ITRSQNNIFKPK-KFFYASNHPLPENLEPSNVR 450
                                        TR++NNI KP  KF   +  P     EP+NV 
Sbjct: 911  TTTTPNRTTVSDASHQPTAPQQNQHNMKTRAKNNIKKPNTKFSLTATLPNRSPSEPTNVT 970

Query: 451  QAMQHPHWRQAISEEFNALIRNGTWSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARL 510
            QA++   WR A+S+EF+A  RN TW LV P +++ +V CKW+F++K  P+G ID YKARL
Sbjct: 971  QALKDKKWRFAMSDEFDAQQRNHTWDLV-PHESQLLVGCKWVFKLKYLPNGAIDKYKARL 1029

Query: 511  VAKGFTQCPGVDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYM 570
            VAKGF Q  GVD+ ETF+PV++  TI+L+L +A+ K W++ QLDVNNAFLQG+L EEVYM
Sbjct: 1030 VAKGFNQQYGVDYAETFSPVIKSTTIRLVLDVAVKKDWEIKQLDVNNAFLQGTLTEEVYM 1089

Query: 571  AQPPGLKDSQQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASG 630
            AQPPG  D  +PT+VC+L KAIYGL+QAPRAW+  LK  + + GF  S SD SLFIY  G
Sbjct: 1090 AQPPGFIDKDRPTHVCRLRKAIYGLKQAPRAWYMELKQHLFNIGFVNSLSDASLFIYCHG 1149

Query: 631  TTLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLS 690
            TT  Y LVYVDD+++TG+D S +   + SL+ RFS+K     HYFLGIE   +K  L L 
Sbjct: 1150 TTFVYVLVYVDDIIVTGSDKSSIDAVLTSLAERFSIKDPTDLHYFLGIEATRTKQGLHLM 1209

Query: 691  QHKFIRDILQRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPD 750
            Q K+I+D+L + +M  AKP  TPL T+  LTL+ GT   D++ YR ++G+LQYL  TRPD
Sbjct: 1210 QRKYIKDLLAKHNMADAKPVLTPLPTSPKLTLHGGTKLNDASEYRSVVGSLQYLAFTRPD 1269

Query: 751  LSFAINKLSQFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNI 810
            +++A+N+LSQ M +PT  H+Q  KR+LRYL  T   GI L  T+ L L  ++DADW G+ 
Sbjct: 1270 IAYAVNRLSQLMPQPTEDHWQAAKRVLRYLAGTSTHGIFLDTTSPLNLHAFSDADWAGDS 1329

Query: 811  DDRTSTSAYLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIP 870
            DD  ST+AY+IY G NPISW S+KQR VARSSTE+EYRAVA A +E+ W+ +LLS+LHI 
Sbjct: 1330 DDYVSTNAYVIYLGKNPISWSSKKQRGVARSSTESEYRAVANAASEVKWLCSLLSKLHIR 1389

Query: 871  LSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADL 930
            L   P + CDN+GATYLC+NPV HS+MKHI++DYHFVR  ++ G L+VSHVST+DQLAD 
Sbjct: 1390 LPIRPSIFCDNIGATYLCANPVFHSRMKHIAIDYHFVRNMIQSGALRVSHVSTRDQLADA 1449

Query: 931  LTKPLPRAKFEELRSKMKV 949
            LTKPL RA F+  R K+ V
Sbjct: 1450 LTKPLSRAHFQSARFKIGV 1468



 Score =  152 bits (384), Expect = 9e-37
 Identities = 91/331 (27%), Positives = 166/331 (49%), Gaps = 33/331 (9%)

Query: 2   VQFNALLIGYDLFGFVDGTKPEPA---------EKHVDYNYWRRQDKLILHAILSSVEAS 52
           +Q +ALL GY+L G +DG+   PA           +  Y  W+RQD+LI  A++ ++   
Sbjct: 44  LQIHALLDGYELAGHLDGSIETPAPTLTTNNVVSANPQYTLWKRQDRLIFSALIGAISPP 103

Query: 53  IITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDE 112
           +  ++     +   W  L   +A  +   I  L+ ++ +  KG+K++ EY+ +   + D+
Sbjct: 104 VQPLVSRATKASQIWKTLTNTYAKSSYDHIKQLRTQIKQLKKGTKTIDEYVLSHTTLLDQ 163

Query: 113 LAIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQE 172
           LAI+ KP++ ++ V     GL  ++K +   +  ++N  +  E+H+ L++HE  L     
Sbjct: 164 LAILGKPMEHEEQVERILEGLPEDYKTVVDQIEGKDNTPSITEIHERLINHEAKLLSTAA 223

Query: 173 PTIIPTAQVAYRGKPKYHKN-------------GSFHNHINPSVNNISDSQGQQKQV-MC 218
            +       A   + ++H N              ++ N+  PS NN S  +  +  +  C
Sbjct: 224 LSSSSLPMSANVAQQRHHNNNRNNNQNKNRTQGNTYTNNWQPSANNKSGQRPFKPYLGKC 283

Query: 219 QFCDKSGHTAKECYKIHG-YPSKNGVRSA-------AHSARYTPHTDETDWILDSGATHH 270
           Q C+  GH+A+ C ++    PS +   S        A+ A   P+T   +W+LDSGATHH
Sbjct: 284 QICNVQGHSARRCPQLQAMQPSSSSSASTFTPWQPRANLAMGAPYT-ANNWLLDSGATHH 342

Query: 271 LTNNLDDLHITNPYHGSDKIIIGDGNTLPIS 301
           +T++L+ L +  PY+G D ++I DG +L I+
Sbjct: 343 ITSDLNALALHQPYNGDD-VMIADGTSLKIT 372


>At4g02960 putative polyprotein of LTR transposon
          Length = 1456

 Score =  610 bits (1574), Expect = e-175
 Identities = 322/636 (50%), Positives = 424/636 (66%), Gaps = 26/636 (4%)

Query: 324  PYPTINQNAHAANLPINISLIPPHTILSLNPTIPPPQAPN--SLMATTP------PTPEA 375
            P+ T N N+   N PI         + + NP  P P +PN  S +  +P      PTP  
Sbjct: 824  PHQTQNSNS---NSPI---------LNNPNPNSPSPNSPNQNSPLPQSPISSPHIPTPST 871

Query: 376  ILQEAPLSPSTSSGNESSPSPSPTNNSIALTNPPADSNATNHIITRSQNNIFKP-KKFFY 434
             + E P SPS+SS +     P      I   N  A  N T+ + TR+++ I KP +K+ Y
Sbjct: 872  SISE-PNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVN-THSMATRAKDGIRKPNQKYSY 929

Query: 435  ASNHPLPENLEPSNVRQAMQHPHWRQAISEEFNALIRNGTWSLVPPPK-NKNIVDCKWLF 493
            A++  L  N EP    QAM+   WRQA+  E NA I N TW LVPPP  +  IV C+W+F
Sbjct: 930  ATS--LAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIF 987

Query: 494  RIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILTIALTKGWKMHQL 553
              K N DG+++ YKARLVAKG+ Q PG+D+ ETF+PV++  +I+++L +A+ + W + QL
Sbjct: 988  TKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQL 1047

Query: 554  DVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSH 613
            DVNNAFLQG+L +EVYM+QPPG  D  +P YVC+L KAIYGL+QAPRAW+  L+T++ + 
Sbjct: 1048 DVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTV 1107

Query: 614  GFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPH 673
            GF  S SD SLF+   G ++ Y LVYVDD+L+TGND   L H + +LS RFS+K     H
Sbjct: 1108 GFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLH 1167

Query: 674  YFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTL 733
            YFLGIE       L LSQ ++  D+L R +M  AKP  TP++T+  LTL+ GT   D T 
Sbjct: 1168 YFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTE 1227

Query: 734  YRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLKRLLRYLKATINFGILLKKT 793
            YR I+G+LQYL  TRPDLS+A+N+LSQ+MH PT  H+  LKR+LRYL  T + GI LKK 
Sbjct: 1228 YRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKG 1287

Query: 794  NALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATA 853
            N L+L  Y+DADW G+ DD  ST+ Y++Y G +PISW S+KQ+ V RSSTEAEYR+VA  
Sbjct: 1288 NTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANT 1347

Query: 854  TAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRD 913
            ++E+ WI +LL+EL I LS PP++ CDNVGATYLC+NPV HS+MKHI+LDYHF+R QV+ 
Sbjct: 1348 SSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQS 1407

Query: 914  GKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKV 949
            G L+V HVST DQLAD LTKPL R  F+    K+ V
Sbjct: 1408 GALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443



 Score =  147 bits (372), Expect = 2e-35
 Identities = 96/335 (28%), Positives = 160/335 (47%), Gaps = 55/335 (16%)

Query: 3   QFNALLIGYDLFGFVDGTKPEPAEK---------HVDYNYWRRQDKLILHAILSSVEASI 53
           Q +AL  GY+L GF+DG+ P P            + DY  WRRQDKLI  AIL ++  S+
Sbjct: 37  QVHALFDGYELAGFLDGSTPMPPATIGTDAVPRVNPDYTRWRRQDKLIYSAILGAISMSV 96

Query: 54  ITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDEL 113
              +     +   W+ L K++A+ +   +  L+  +TR                   D+L
Sbjct: 97  QPAVSRATTAAQIWETLRKIYANPSYGHVTQLRF-ITRF------------------DQL 137

Query: 114 AIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQEP 173
           A++ KP+D D+ V      L  ++K +   +  ++   +  E+H+ L++ E+ L      
Sbjct: 138 ALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTPPSLTEIHERLINRESKLLALNSA 197

Query: 174 TIIP-TAQVAY------------RGKPK-YHKNGSFHNHINPSVNNISDSQGQQKQVM-- 217
            ++P TA V              RG  + Y+ N +  N   PS +       Q K  +  
Sbjct: 198 EVVPITANVVTHRNTNTNRNQNNRGDNRNYNNNNNRSNSWQPSSSGSRSDNRQPKPYLGR 257

Query: 218 CQFCDKSGHTAKECYKIHGYPSKNGVRSA----------AHSARYTPHTDETDWILDSGA 267
           CQ C   GH+AK C ++H + S    + +          A+ A  +P+ +  +W+LDSGA
Sbjct: 258 CQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQPRANLAVNSPY-NANNWLLDSGA 316

Query: 268 THHLTNNLDDLHITNPYHGSDKIIIGDGNTLPISH 302
           THH+T++ ++L    PY G D ++I DG+T+PI+H
Sbjct: 317 THHITSDFNNLSFHQPYTGGDDVMIADGSTIPITH 351


>At1g44510 polyprotein, putative
          Length = 1459

 Score =  609 bits (1571), Expect = e-174
 Identities = 333/719 (46%), Positives = 450/719 (62%), Gaps = 72/719 (10%)

Query: 303  VDPKTNKIYTSRHVVFHDNHFPY---------------PTINQNAHAANLPINISLIPPH 347
            +D   N++YTSRHV+F ++ +P+               P  + ++  AN     S++   
Sbjct: 735  LDVDNNRLYTSRHVMFDESTYPFAASIREQSQSSLVTPPESSSSSSPANSGFPCSVLRLQ 794

Query: 348  TILSLNPTIP-PPQ----APNSLMATTPPTPE--AILQEAPLSPSTSSGNESS------- 393
            +  + +P  P PPQ    +P S   T  PTP   + ++++ LSPS S  N          
Sbjct: 795  SPPASSPETPSPPQQQNDSPVSPRQTGSPTPSHHSQVRDSTLSPSPSVSNSEPTAPHENG 854

Query: 394  -----------------PSPSP-TNNSIALTNPPADSNAT-------------------- 415
                             P+P+P TN S ++   P D + T                    
Sbjct: 855  PEPEAQSNPNSPFIGPLPNPNPETNPSSSIEQRPVDKSTTTALPPNQTTIAATSNSRSQP 914

Query: 416  ---NHII-TRSQNNIFKPK-KFFYASNHPLPENLEPSNVRQAMQHPHWRQAISEEFNALI 470
               NH + TRS+NNI KPK K         P   EP+ V QA++   WR A+S+EF+A  
Sbjct: 915  PKNNHQMKTRSKNNITKPKTKTSLTVALTQPHLSEPNTVTQALKDKKWRFAMSDEFDAQQ 974

Query: 471  RNGTWSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPV 530
            RN TW LVPP   +++V C+W+F++K  P+G ID YKARLVAKGF Q  GVD+ ETF+PV
Sbjct: 975  RNHTWDLVPPNPTQHLVGCRWVFKLKYLPNGLIDKYKARLVAKGFNQQYGVDYAETFSPV 1034

Query: 531  VRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHK 590
            ++  TI+++L +A+ K W + QLDVNNAFLQG+L EEVYMAQPPG  D  +P++VC+L K
Sbjct: 1035 IKATTIRVVLDVAVKKNWPLKQLDVNNAFLQGTLTEEVYMAQPPGFVDKDRPSHVCRLRK 1094

Query: 591  AIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDA 650
            AIYGL+QAPRAW+  LK  + + GF  S +D SLFIY+ GTTL Y LVYVDD+++TG+D 
Sbjct: 1095 AIYGLKQAPRAWYMELKQHLLNIGFVNSLADTSLFIYSHGTTLLYLLVYVDDIIVTGSDH 1154

Query: 651  SFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPT 710
              +   + SL+ RFS+K     HYFLGIE   + T L L Q K++ D+L + +M  AKP 
Sbjct: 1155 KSVSAVLSSLAERFSIKDPTDLHYFLGIEATRTNTGLHLMQRKYMTDLLAKHNMLDAKPV 1214

Query: 711  YTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHF 770
             TPL T+  LTL+ GT   D++ YR ++G+LQYL  TRPD++FA+N+LSQFMH+PTS H+
Sbjct: 1215 ATPLPTSPKLTLHGGTKLNDASEYRSVVGSLQYLAFTRPDIAFAVNRLSQFMHQPTSDHW 1274

Query: 771  QHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISW 830
            Q  KR+LRYL  T   GI L  ++ + L  ++DADW G+  D  ST+AY+IY G NPISW
Sbjct: 1275 QAAKRVLRYLAGTTTHGIFLNSSSPIHLHAFSDADWAGDSADYVSTNAYVIYLGRNPISW 1334

Query: 831  LSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSN 890
             S+KQR V+RSSTE+EYRAVA A +EI W+ +LL+ELHI L   P + CDN+GATY+C+N
Sbjct: 1335 SSKKQRGVSRSSTESEYRAVANAASEIRWLCSLLTELHIRLPHGPTIFCDNIGATYICAN 1394

Query: 891  PVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKV 949
            PV HS+MKHI+LDYHFVR  ++   L+VSHVST DQLAD LTK L R  F   RSK+ V
Sbjct: 1395 PVFHSRMKHIALDYHFVRGMIQSRALRVSHVSTNDQLADALTKSLSRPHFLSARSKIGV 1453



 Score =  167 bits (422), Expect = 3e-41
 Identities = 100/340 (29%), Positives = 172/340 (50%), Gaps = 47/340 (13%)

Query: 2   VQFNALLIGYDLFGFVDGTKPEPAEK---------HVDYNYWRRQDKLILHAILSSVEAS 52
           +Q +ALL GYDL G++D +   P E          +  +  W+RQDKLI  A++ ++  +
Sbjct: 43  IQIHALLDGYDLAGYLDNSVVIPPETTTINSVVSANPSFTLWKRQDKLIFSALIGAISPA 102

Query: 53  IITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDE 112
           + +++    NS   W  LN  +A  +   I  L++++ R +KG+K++ EY+Q+     D+
Sbjct: 103 VQSLVSRATNSSQIWSTLNNTYAKPSYGHIKQLRQQIQRLTKGTKTIDEYVQSHTTRLDQ 162

Query: 113 LAIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQE 172
           LAI+ KP++ ++ V H   GL  E+K +   +  ++N     E+H+ L++HE+ L  D+ 
Sbjct: 163 LAILGKPMEHEEQVEHILKGLPEEYKTVVDQIEGKDNTPTITEIHERLINHESKLLSDEV 222

Query: 173 P--TIIPTAQVAYRGK-------PKYHKN---GSFHN-----HINPSVNNISDSQGQQKQ 215
           P  +  P +  A + +          HKN   G+ HN     +  PS  N S  +  +  
Sbjct: 223 PPSSSFPMSANAVQQRNFNNNCNQNQHKNRYQGNTHNNNTNTNSQPSTYNKSGQRTFKPY 282

Query: 216 V-MCQFCDKSGHTAKECYKIHGYPSKNGVRSAAHSARYTPHTD--------------ETD 260
           +  CQ C   GH+A+ C      P    ++  A S+ ++P T                  
Sbjct: 283 LGKCQICSVQGHSARRC------PQLQAMQLPASSSAHSPFTPWQPRANLAIGSPYAANP 336

Query: 261 WILDSGATHHLTNNLDDLHITNPYHGSDKIIIGDGNTLPI 300
           W+LDSGATHH+T++L+ L +  PY+G + ++I DG  L I
Sbjct: 337 WLLDSGATHHITSDLNALSLHQPYNGGEYVMIADGTGLTI 376


>At1g59265 polyprotein, putative
          Length = 1466

 Score =  602 bits (1553), Expect = e-172
 Identities = 330/731 (45%), Positives = 441/731 (60%), Gaps = 87/731 (11%)

Query: 306  KTNKIYTSRHVVFHDNHFPY--------PTINQNAHAA-------NLPINISLIP----- 345
            +T+++Y SRHV F +N FP+        P   Q   ++        LP    ++P     
Sbjct: 732  QTSRLYISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCS 791

Query: 346  -PH-------------------------TILSLNPTIPPPQAP--NSLMATTPPTP---- 373
             PH                         +  S  P+ P P AP  N    TT PT     
Sbjct: 792  DPHHAATPPSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQ 851

Query: 374  --------------EAILQEAPLSPSTSSGNESSPSP---------SPTNNSIALTNPPA 410
                          E+  Q A    + +  + SSPSP         SPT  SI +  PP 
Sbjct: 852  THSSQNTSQNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPP 911

Query: 411  DSNATNH----------IITRSQNNIFKPKKFFYASNHPLPENLEPSNVRQAMQHPHWRQ 460
             +   N+          + TR++  I KP    Y+    L    EP    QA++   WR 
Sbjct: 912  LAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPK-YSLAVSLAAESEPRTAIQALKDERWRN 970

Query: 461  AISEEFNALIRNGTWSLVPPPKNK-NIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCP 519
            A+  E NA I N TW LVPPP +   IV C+W+F  K N DG+++ YKARLVAKG+ Q P
Sbjct: 971  AMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRP 1030

Query: 520  GVDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDS 579
            G+D+ ETF+PV++  +I+++L +A+ + W + QLDVNNAFLQG+L ++VYM+QPPG  D 
Sbjct: 1031 GLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDK 1090

Query: 580  QQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVY 639
             +P YVCKL KA+YGL+QAPRAW+  L+ ++ + GF  S SD SLF+   G ++ Y LVY
Sbjct: 1091 DRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVY 1150

Query: 640  VDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDIL 699
            VDD+L+TGND + LH+ + +LS RFS+K     HYFLGIE     T L LSQ ++I D+L
Sbjct: 1151 VDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLL 1210

Query: 700  QRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLS 759
             R +M  AKP  TP++ +  L+L  GT   D T YR I+G+LQYL  TRPD+S+A+N+LS
Sbjct: 1211 ARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLS 1270

Query: 760  QFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAY 819
            QFMH PT  H Q LKR+LRYL  T N GI LKK N L+L  Y+DADW G+ DD  ST+ Y
Sbjct: 1271 QFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGY 1330

Query: 820  LIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLC 879
            ++Y G +PISW S+KQ+ V RSSTEAEYR+VA  ++E+ WI +LL+EL I L++PP++ C
Sbjct: 1331 IVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYC 1390

Query: 880  DNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAK 939
            DNVGATYLC+NPV HS+MKHI++DYHF+R QV+ G L+V HVST DQLAD LTKPL R  
Sbjct: 1391 DNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTA 1450

Query: 940  FEELRSKMKVT 950
            F+   SK+ VT
Sbjct: 1451 FQNFASKIGVT 1461



 Score =  174 bits (442), Expect = 2e-43
 Identities = 129/477 (27%), Positives = 220/477 (46%), Gaps = 62/477 (12%)

Query: 3   QFNALLIGYDLFGFVDGTKPEPAEK---------HVDYNYWRRQDKLILHAILSSVEASI 53
           Q +AL  GY+L GF+DG+   P            + DY  W+RQDKLI  A+L ++  S+
Sbjct: 37  QVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLIYSAVLGAISMSV 96

Query: 54  ITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDEL 113
              +     +   W+ L K++A+ +   +  L+ +L + +KG+K++ +Y+Q +    D+L
Sbjct: 97  QPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQL 156

Query: 114 AIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQEP 173
           A++ KP+D D+ V      L  E+K +   +  ++      E+H+ L++HE+ +      
Sbjct: 157 ALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKILAVSSA 216

Query: 174 TIIPTA--QVAYRG--KPKYHKNGSFHNHINPSVNNISDSQGQQKQV------------- 216
           T+IP     V++R       + NG+ +N  +   NN +    QQ                
Sbjct: 217 TVIPITANAVSHRNTTTTNNNNNGNRNNRYDNRNNNNNSKPWQQSSTNFHPNNNQSKPYL 276

Query: 217 -MCQFCDKSGHTAKECYKIHGYPSKNGVRSAAHSARYTPHT-----------DETDWILD 264
             CQ C   GH+AK C ++  + S   V S    + +TP                +W+LD
Sbjct: 277 GKCQICGVQGHSAKRCSQLQHFLS--SVNSQQPPSPFTPWQPRANLALGSPYSSNNWLLD 334

Query: 265 SGATHHLTNNLDDLHITNPYHGSDKIIIGDGNTLPISHVDPKTNKIYTSRHVVFHDNHFP 324
           SGATHH+T++ ++L +  PY G D +++ DG+T+PISH    T+    SR +  H N   
Sbjct: 335 SGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTG-STSLSTKSRPLNLH-NILY 392

Query: 325 YPTINQNAHA------ANLPINISLIP-PHTILSLNPTIPPPQAPNSLMATTPPTPEAIL 377
            P I++N  +      AN  +++   P    +  LN  +P  Q             +  L
Sbjct: 393 VPNIHKNLISVYRLCNAN-GVSVEFFPASFQVKDLNTGVPLLQGKT----------KDEL 441

Query: 378 QEAPLSPSTSSGNESSPSPSPTNNS-IALTNPPADSNATNHIITRSQNNIFKPKKFF 433
            E P++ S      +SPS   T++S  A    PA S   N +I+    ++  P   F
Sbjct: 442 YEWPIASSQPVSLFASPSSKATHSSWHARLGHPAPS-ILNSVISNYSLSVLNPSHKF 497


>At1g58889 polyprotein, putative
          Length = 1466

 Score =  601 bits (1549), Expect = e-172
 Identities = 329/731 (45%), Positives = 440/731 (60%), Gaps = 87/731 (11%)

Query: 306  KTNKIYTSRHVVFHDNHFPY--------PTINQNAHAA-------NLPINISLIP----- 345
            +T+++Y SRHV F +N FP+        P   Q   ++        LP    ++P     
Sbjct: 732  QTSRLYISRHVRFDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCS 791

Query: 346  -PH-------------------------TILSLNPTIPPPQAP--NSLMATTPPTP---- 373
             PH                         +  S  P+ P P AP  N    TT PT     
Sbjct: 792  DPHHAATPPSSPSAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQ 851

Query: 374  --------------EAILQEAPLSPSTSSGNESSPSP---------SPTNNSIALTNPPA 410
                          E+  Q A    + +  + SSPSP         SPT  SI +  PP 
Sbjct: 852  THSSQNTSQNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPP 911

Query: 411  DSNATNH----------IITRSQNNIFKPKKFFYASNHPLPENLEPSNVRQAMQHPHWRQ 460
             +   N+          + TR++  I KP    Y+    L    EP    QA++   WR 
Sbjct: 912  LAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPK-YSLAVSLAAESEPRTAIQALKDERWRN 970

Query: 461  AISEEFNALIRNGTWSLVPPPKNK-NIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCP 519
            A+  E NA I N TW LVPPP +   IV C+W+F  K N DG+++ YKAR VAKG+ Q P
Sbjct: 971  AMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRP 1030

Query: 520  GVDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDS 579
            G+D+ ETF+PV++  +I+++L +A+ + W + QLDVNNAFLQG+L ++VYM+QPPG  D 
Sbjct: 1031 GLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDK 1090

Query: 580  QQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVY 639
             +P YVCKL KA+YGL+QAPRAW+  L+ ++ + GF  S SD SLF+   G ++ Y LVY
Sbjct: 1091 DRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVY 1150

Query: 640  VDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDIL 699
            VDD+L+TGND + LH+ + +LS RFS+K     HYFLGIE     T L LSQ ++I D+L
Sbjct: 1151 VDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLL 1210

Query: 700  QRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLS 759
             R +M  AKP  TP++ +  L+L  GT   D T YR I+G+LQYL  TRPD+S+A+N+LS
Sbjct: 1211 ARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLS 1270

Query: 760  QFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAY 819
            QFMH PT  H Q LKR+LRYL  T N GI LKK N L+L  Y+DADW G+ DD  ST+ Y
Sbjct: 1271 QFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGY 1330

Query: 820  LIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLC 879
            ++Y G +PISW S+KQ+ V RSSTEAEYR+VA  ++E+ WI +LL+EL I L++PP++ C
Sbjct: 1331 IVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYC 1390

Query: 880  DNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAK 939
            DNVGATYLC+NPV HS+MKHI++DYHF+R QV+ G L+V HVST DQLAD LTKPL R  
Sbjct: 1391 DNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTA 1450

Query: 940  FEELRSKMKVT 950
            F+   SK+ VT
Sbjct: 1451 FQNFASKIGVT 1461



 Score =  174 bits (442), Expect = 2e-43
 Identities = 129/477 (27%), Positives = 220/477 (46%), Gaps = 62/477 (12%)

Query: 3   QFNALLIGYDLFGFVDGTKPEPAEK---------HVDYNYWRRQDKLILHAILSSVEASI 53
           Q +AL  GY+L GF+DG+   P            + DY  W+RQDKLI  A+L ++  S+
Sbjct: 37  QVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDKLIYSAVLGAISMSV 96

Query: 54  ITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDEL 113
              +     +   W+ L K++A+ +   +  L+ +L + +KG+K++ +Y+Q +    D+L
Sbjct: 97  QPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQL 156

Query: 114 AIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQEP 173
           A++ KP+D D+ V      L  E+K +   +  ++      E+H+ L++HE+ +      
Sbjct: 157 ALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKILAVSSA 216

Query: 174 TIIPTA--QVAYRG--KPKYHKNGSFHNHINPSVNNISDSQGQQKQV------------- 216
           T+IP     V++R       + NG+ +N  +   NN +    QQ                
Sbjct: 217 TVIPITANAVSHRNTTTTNNNNNGNRNNRYDNRNNNNNSKPWQQSSTNFHPNNNQSKPYL 276

Query: 217 -MCQFCDKSGHTAKECYKIHGYPSKNGVRSAAHSARYTPHT-----------DETDWILD 264
             CQ C   GH+AK C ++  + S   V S    + +TP                +W+LD
Sbjct: 277 GKCQICGVQGHSAKRCSQLQHFLS--SVNSQQPPSPFTPWQPRANLALGSPYSSNNWLLD 334

Query: 265 SGATHHLTNNLDDLHITNPYHGSDKIIIGDGNTLPISHVDPKTNKIYTSRHVVFHDNHFP 324
           SGATHH+T++ ++L +  PY G D +++ DG+T+PISH    T+    SR +  H N   
Sbjct: 335 SGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTG-STSLSTKSRPLNLH-NILY 392

Query: 325 YPTINQNAHA------ANLPINISLIP-PHTILSLNPTIPPPQAPNSLMATTPPTPEAIL 377
            P I++N  +      AN  +++   P    +  LN  +P  Q             +  L
Sbjct: 393 VPNIHKNLISVYRLCNAN-GVSVEFFPASFQVKDLNTGVPLLQGKT----------KDEL 441

Query: 378 QEAPLSPSTSSGNESSPSPSPTNNS-IALTNPPADSNATNHIITRSQNNIFKPKKFF 433
            E P++ S      +SPS   T++S  A    PA S   N +I+    ++  P   F
Sbjct: 442 YEWPIASSQPVSLFASPSSKATHSSWHARLGHPAPS-ILNSVISNYSLSVLNPSHKF 497


>At1g31210 putative reverse transcriptase
          Length = 1415

 Score =  529 bits (1362), Expect = e-150
 Identities = 291/660 (44%), Positives = 394/660 (59%), Gaps = 33/660 (5%)

Query: 305  PKTNKIYTSRHVVFHDNHFPYPTINQNAHAANLPINISLIPPHTILSLNPTIPPPQAPNS 364
            P T K+Y SR+V+F+++  P+    Q           SL+P ++     P +   Q  N 
Sbjct: 722  PPTGKVYISRNVIFNESELPFKEKYQ-----------SLVPQYS----TPLLQAWQH-NK 765

Query: 365  LMATTPPTPEAILQEAPLSPSTSSGN---ESSPSPSPTNN---SIALTNPPADSNATNH- 417
            +   + P     L   P+  +T +G+   E    P PT+N   S    NP A+  A N  
Sbjct: 766  ISEISVPAAPVQLFSKPIDLNTYAGSQVTEQLTDPEPTSNNEGSDEEVNPVAEEIAANQE 825

Query: 418  -------IITRSQNNIFKPKKFFYASNHPLPENLEPSNVRQAMQHPHWRQAISEEFNALI 470
                   + TRS+  I KP    YA         EP  +  AM+HP W +A+ EE N + 
Sbjct: 826  QVINSHAMTTRSKAGIQKPNTR-YALITSRMNTAEPKTLASAMKHPGWNEAVHEEINRVH 884

Query: 471  RNGTWSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPV 530
               TWSLVPP  + NI+  KW+F+ K +PDG+ID  KARLVAKGF Q  GVD+ ETF+PV
Sbjct: 885  MLHTWSLVPPTDDMNILSSKWVFKTKLHPDGSIDKLKARLVAKGFDQEEGVDYLETFSPV 944

Query: 531  VRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHK 590
            VR  TI+L+L ++ +KGW + QLDV+NAFL G L E V+M QP G  D Q+PT+VC+L K
Sbjct: 945  VRTATIRLVLDVSTSKGWPIKQLDVSNAFLHGELQEPVFMYQPSGFIDPQKPTHVCRLTK 1004

Query: 591  AIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDA 650
            AIYGL+QAPRAW D    F+  +GF  S+SDPSLF+      + Y L+YVDD+LLTG+D 
Sbjct: 1005 AIYGLKQAPRAWFDTFSNFLLDYGFVCSKSDPSLFVCHQDGKILYLLLYVDDILLTGSDQ 1064

Query: 651  SFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPT 710
            S L   +Q+L NRFS+K +G P YFLGI++      LFL Q  +  DILQ+  M    P 
Sbjct: 1065 SLLEDLLQALKNRFSMKDLGPPRYFLGIQIEDYANGLFLHQTAYATDILQQAGMSDCNPM 1124

Query: 711  YTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHF 770
             TPL     L   +    A+ T +R + G LQYL +TRPD+ FA+N + Q MH PT+  F
Sbjct: 1125 PTPL--PQQLDNLNSELFAEPTYFRSLAGKLQYLTITRPDIQFAVNFICQRMHSPTTSDF 1182

Query: 771  QHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISW 830
              LKR+LRY+K TI  G+ +K+ + LTL  Y+D+D  G  + R ST+ + I  G N ISW
Sbjct: 1183 GLLKRILRYIKGTIGMGLPIKRNSTLTLSAYSDSDHAGCKNTRRSTTGFCILLGSNLISW 1242

Query: 831  LSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSN 890
             +++Q TV+ SSTEAEYRA+  A  EI WI+ LL +L IP   P  + CDN+ A YL +N
Sbjct: 1243 SAKRQPTVSNSSTEAEYRALTYAAREITWISFLLRDLGIPQYLPTQVYCDNLSAVYLSAN 1302

Query: 891  PVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKVT 950
            P LH++ KH   DYH++REQV  G ++  H+S   QLAD+ TK LPR  F +LRSK+ V+
Sbjct: 1303 PALHNRSKHFDTDYHYIREQVALGLIETQHISATFQLADVFTKSLPRRAFVDLRSKLGVS 1362



 Score =  120 bits (300), Expect = 5e-27
 Identities = 86/342 (25%), Positives = 147/342 (42%), Gaps = 38/342 (11%)

Query: 3   QFNALLIGYDLFGFVDGTKPEPAEKHVD-------------YNYWRRQDKLILHAILSSV 49
           QF +LL    L GFV+G    P++  +              Y  W   D+L+   +  ++
Sbjct: 32  QFESLLSSQKLIGFVNGAVNAPSQSRLVVNGEVTSEEPNPLYESWFCTDQLVRSWLFGTL 91

Query: 50  EASIITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAI 109
              ++  + N+  S+  W  L + F   + AR   L++ L   SK  K  S Y +  K I
Sbjct: 92  SEEVLGHVHNLSTSRQIWVSLAENFNKSSVAREFSLRQNLQLLSKKEKPFSVYCREFKTI 151

Query: 110 SDELAIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETF--- 166
            D L+ I KP+D+   +    NGLG ++  I   +++  + +     +D++ + + F   
Sbjct: 152 CDALSSIGKPVDESMKIFGFLNGLGRDYDPITTVIQSSLSKLPTPTFNDVVSEVQGFDSK 211

Query: 167 LQRDQEPTIIPTAQVAYR------GKPKYHKN-------------GSFHNHINPSVNNIS 207
           LQ  +E   + T  +A+       G P+Y+ N             G +         + S
Sbjct: 212 LQSYEEAASV-TPHLAFNIERSESGSPQYNPNQKGRGRSGQNKGRGGYSTRGRGFSQHQS 270

Query: 208 DSQGQQKQVMCQFCDKSGHTAKECYKIHGYPSKNGVRSAAHSARYTPHTDETDWILDSGA 267
             Q    + +CQ C ++GHTA +CY  + + +       A S          +W  DS A
Sbjct: 271 SPQVSGPRPVCQICGRTGHTALKCY--NRFDNNYQAEIQAFSTLRVSDDTGKEWHPDSAA 328

Query: 268 THHLTNNLDDLHITNPYHGSDKIIIGDGNTLPISHVDPKTNK 309
           T H+T++ + L     Y G D +++GDG  LPI+H    T K
Sbjct: 329 TAHVTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIK 370


>At4g27210 putative protein
          Length = 1318

 Score =  485 bits (1249), Expect = e-137
 Identities = 265/682 (38%), Positives = 380/682 (54%), Gaps = 37/682 (5%)

Query: 305  PKTNKIYTSRHVVFHDNHFPYPTINQNAH--------AANLPINISLIP----------- 345
            P T ++Y SRHV+F ++ +P+    ++ H        AA L  + S  P           
Sbjct: 538  PPTGRLYISRHVIFDESVYPFSHTYKHLHPQPRTPLLAAWLRSSDSPAPSTSTSPSSRSP 597

Query: 346  ----------PHTILSLNPTIPP-PQAPNSLMATTPPTPEAILQEAPLSPSTSSGNESSP 394
                      P     L PT+ P     ++   TT  +P+   +      S S G+ S  
Sbjct: 598  LFTSADFPPLPQRKTPLLPTLVPISSVSHASNITTQQSPDFDSERTTDFDSASIGDSSHS 657

Query: 395  SPSPTNNSIALTNPPADSNATNH------IITRSQNNIFKPKKFFYASNHPLPENLEPSN 448
            S + +++   +     + + T+       ++TR++  I KP   +   +H +    EP  
Sbjct: 658  SQAGSDSEETIQQASVNVHQTHASTNVHPMVTRAKVGISKPNPRYVFLSHKVSYP-EPKT 716

Query: 449  VRQAMQHPHWRQAISEEFNALIRNGTWSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYKA 508
            V  A++HP W  A++EE        TWSLVP   + +++  KW+FR K + DGT++  KA
Sbjct: 717  VTAALKHPGWTGAMTEEIGNCSETQTWSLVPYKSDMHVLGSKWVFRTKLHADGTLNKLKA 776

Query: 509  RLVAKGFTQCPGVDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEV 568
            R+VAKGF Q  G+D+ ET++PVVR  T++L+L +A    W + Q+DV NAFL G L E V
Sbjct: 777  RIVAKGFLQEEGIDYLETYSPVVRTPTVRLVLHLATALNWDIKQMDVKNAFLHGDLKETV 836

Query: 569  YMAQPPGLKDSQQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYA 628
            YM QP G  D  +P +VC LHK+IYGL+Q+PRAW D   TF+   GF  S+SDPSLFIYA
Sbjct: 837  YMTQPAGFVDPSKPDHVCLLHKSIYGLKQSPRAWFDKFSTFLLEFGFFCSKSDPSLFIYA 896

Query: 629  SGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLF 688
                L   L+YVDD+++TGN +  L   + +L+  F +  MG  HYFLGI++   +  LF
Sbjct: 897  HNNNLILLLLYVDDMVITGNSSQTLTSLLAALNKEFRMTDMGQLHYFLGIQVQRQQNGLF 956

Query: 689  LSQHKFIRDILQRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTR 748
            +SQ K+  D+L    M+   P  TPL        +     +D T +R I G LQYL LTR
Sbjct: 957  MSQQKYAEDLLIAASMEHCTPLPTPLPVQLDRVPHQEELFSDPTYFRSIAGKLQYLTLTR 1016

Query: 749  PDLSFAINKLSQFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDG 808
            PD+ FA+N + Q MH+PT   F  LKR+LRY+K TI  GI   + +   LQ Y+D+DW  
Sbjct: 1017 PDIQFAVNFVCQKMHQPTISDFHLLKRILRYIKGTITMGISYSRDSPTLLQAYSDSDWGN 1076

Query: 809  NIDDRTSTSAYLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELH 868
                R S      + G N +SW S+K  TV+RSSTEAEY++++ A +EI+W++ LL EL 
Sbjct: 1077 CKQTRRSVGGLCTFMGTNLVSWSSKKHPTVSRSSTEAEYKSLSDAASEILWLSTLLRELR 1136

Query: 869  IPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLA 928
            IPL   P L CDN+ A YL +NP  H++ KH  +D+HFVRE+V    L V H+   +Q+A
Sbjct: 1137 IPLPDTPELFCDNLSAVYLTANPAFHARTKHFDIDFHFVRERVALKALVVKHIPGSEQIA 1196

Query: 929  DLLTKPLPRAKFEELRSKMKVT 950
            D+ TK LP   F  LR K+ VT
Sbjct: 1197 DIFTKSLPYEAFIHLRGKLGVT 1218



 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 70/267 (26%), Positives = 112/267 (41%), Gaps = 58/267 (21%)

Query: 41  ILHAILSSVEASIITMLGNVKNSKDAWDILNKMFASKT--RARIMHLKERLTRTSKGSKS 98
           +LH I S+   S  T   N+    D +  ++ ++ S      R+  L+ RL   SK  K+
Sbjct: 5   LLHQIRSTKPGSRQTESSNL-GFLDPFPRISSVWLSTATLHMRLFELQRRLQNVSKRDKT 63

Query: 99  VSEYLQAIKAISDELAIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHD 158
           +  YL  +K I D+LA +  P+ +   +  A NGLG E++ I   +    +      L +
Sbjct: 64  MDAYLNDLKNICDQLASVGSPVTEKMKIFAALNGLGREYEPIKTTIENSMDTQPGPSLEN 123

Query: 159 I---LVDHETFLQRDQEPTIIPTAQVAYRGKPKYHKNGSFHNHINPSVNNISDSQGQQKQ 215
           +   L  ++  LQ   E T I +  VA+              +I  S ++  +S  + K 
Sbjct: 124 VIPKLTGYDDRLQGYLEETTI-SPYVAF--------------NITTSDDSYRNSYNRGKD 168

Query: 216 VMCQFCDKSGHTAKECYKIHGYPSKNGVRSAAHSARYTPHTDETDWILDSGATHHLTNNL 275
           V  Q               HG                       +W+ DS AT H+TN+ 
Sbjct: 169 VTDQ---------------HG----------------------NEWLPDSAATAHVTNSP 191

Query: 276 DDLHITNPYHGSDKIIIGDGNTLPISH 302
             L  + PYHG+D I++ DGN LPI+H
Sbjct: 192 RSLQQSQPYHGTDAIMVDDGNYLPITH 218


>At4g10690 retrotransposon like protein
          Length = 1515

 Score =  483 bits (1243), Expect = e-136
 Identities = 274/708 (38%), Positives = 381/708 (53%), Gaps = 73/708 (10%)

Query: 305  PKTNKIYTSRHVVFHDNHFPYPTI--------------------NQNAHAANLP---INI 341
            P T K+Y  RHV+F +  FPY  I                    +  A +   P   +  
Sbjct: 724  PPTGKVYICRHVLFDERKFPYSDIYSQFQTISGSPLFTAWQKGFSSTALSRETPSTNVED 783

Query: 342  SLIPPHTILSLNPTIPPPQAPNSLMATTPPTPEAILQE---APLSPSTSSGNESSPSPSP 398
             + P  T+ S   ++P   APN     T P  +         P SP TS+   + P  S 
Sbjct: 784  IIFPSATVSS---SVPTGCAPNIAETATAPDVDVAAAHDMVVPPSPITSTSLPTQPEEST 840

Query: 399  -------TNNSIALTN-----------------PPADS---------NATNHIITRSQNN 425
                   T++  A+++                 PP  S           ++ +ITR+++ 
Sbjct: 841  SDQNHYSTDSETAISSAMTPQSINVSLFEDSDFPPLQSVISSTTAAPETSHPMITRAKSG 900

Query: 426  IFKPKK----FFYASNHPLPENLEPSNVRQAMQHPHWRQAISEEFNALIRNGTWSLVPPP 481
            I KP      F   SN+P     EP +V++A++   W  A+ EE   +    TW LVPP 
Sbjct: 901  ITKPNPKYALFSVKSNYP-----EPKSVKEALKDEGWTNAMGEEMGTMHETDTWDLVPPE 955

Query: 482  KNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILT 541
                ++ CKW+F+ K N DG++D  KARLVA+G+ Q  GVD+ ET++PVVR  T++ IL 
Sbjct: 956  MVDRLLGCKWVFKTKLNSDGSLDRLKARLVARGYEQEEGVDYVETYSPVVRSATVRSILH 1015

Query: 542  IALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYGLRQAPRA 601
            +A    W + QLDV NAFL   L E V+M QPPG +D  +P YVCKL KAIY L+QAPRA
Sbjct: 1016 VATINKWSLKQLDVKNAFLHDELKETVFMTQPPGFEDPSRPDYVCKLKKAIYDLKQAPRA 1075

Query: 602  WHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLS 661
            W D   +++  +GF  S SDPSLF+Y  G  + + L+YVDD++LTGN+   L   +  LS
Sbjct: 1076 WFDKFSSYLLKYGFICSFSDPSLFVYLKGRDVMFLLLYVDDMILTGNNDVLLQQLLNILS 1135

Query: 662  NRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPLSTTSTLT 721
              F +K MG  HYFLGI+       LFLSQ K+  D+L    M       TPL     L 
Sbjct: 1136 TEFRMKDMGALHYFLGIQAHYHNDGLFLSQEKYTSDLLVNAGMSDCSSMPTPLQL--DLL 1193

Query: 722  LNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLKRLLRYLK 781
              +     + T +R++ G LQYL LTRPD+ FA+N + Q MH PT   F  LKR+L YLK
Sbjct: 1194 QGNNKPFPEPTYFRRLAGKLQYLTLTRPDIQFAVNFVCQKMHAPTMSDFHLLKRILHYLK 1253

Query: 782  ATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQRTVARS 841
             T+  GI L       L+ Y+D+DW G  D R ST  +  + G N ISW +++  TV++S
Sbjct: 1254 GTMTMGINLSSNTDSVLRCYSDSDWAGCKDTRRSTGGFCTFLGYNIISWSAKRHPTVSKS 1313

Query: 842  STEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHIS 901
            STEAEYR ++ A +E+ WI  LL E+ +P  + P + CDN+ A YL +NP LHS+ KH  
Sbjct: 1314 STEAEYRTLSFAASEVSWIGFLLQEIGLPQQQIPEMYCDNLSAVYLSANPALHSRSKHFQ 1373

Query: 902  LDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKV 949
            +DY++VRE+V  G L V H+    QLAD+ TK LP+A F +LR K+ V
Sbjct: 1374 VDYYYVRERVALGALTVKHIPASQQLADIFTKSLPQAPFCDLRFKLGV 1421



 Score =  117 bits (293), Expect = 3e-26
 Identities = 86/332 (25%), Positives = 138/332 (40%), Gaps = 48/332 (14%)

Query: 15  GFVDGTKPEPA-------------EKHVDYNYWRRQDKLILHAILSSVEASIITMLGNVK 61
           GFV G  P PA             E + ++  W R D+L+   I  S+    + ++  + 
Sbjct: 40  GFVTGATPRPASTIIVTKDDIQSEEANQEFLKWTRIDQLVKAWIFGSLSEEALKVVIGLN 99

Query: 62  NSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDELAIINKPID 121
           ++++ W  L + F   +  R   L++RL   SK  K++  YL  +K I D+L  I  P+ 
Sbjct: 100 SAQEVWLGLARRFNRFSTTRKYDLQKRLGTCSKAGKTMDAYLSEVKNICDQLDSIGFPVT 159

Query: 122 DDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQEPTIIPTAQV 181
           + + +    NGLG E++ IA  +    +        D++    TF   D+  T    ++V
Sbjct: 160 EQEKIFGVLNGLGKEYESIATVIEHSLDVYPGPCFDDVVYKLTTF--DDKLSTYTANSEV 217

Query: 182 A--------------------------YRGKPKYHKNG-SFHNHINPSVNNISDSQGQQK 214
                                      +RG+  Y   G  FH       NN     G   
Sbjct: 218 TPHLAFYTDKSYSSRGNNNSRGGRYGNFRGRGSYSSRGRGFHQQFGSGSNN---GSGNGS 274

Query: 215 QVMCQFCDKSGHTAKECY---KIHGYPSKNGVRSAAHSARYTPHTDETDWILDSGATHHL 271
           +  CQ C K GH+A +CY   + +  P       AA            +W+ DS AT H+
Sbjct: 275 KPTCQICRKYGHSAFKCYTRFEENYLPEDLPNAFAAMRVSDQNQASSHEWLPDSAATAHI 334

Query: 272 TNNLDDLHITNPYHGSDKIIIGDGNTLPISHV 303
           TN  D L  +  Y G D +I+G+G+ LPI+H+
Sbjct: 335 TNTTDGLQNSQTYSGDDSVIVGNGDFLPITHI 366


>At1g53810 
          Length = 1522

 Score =  473 bits (1216), Expect = e-133
 Identities = 269/703 (38%), Positives = 379/703 (53%), Gaps = 59/703 (8%)

Query: 305  PKTNKIYTSRHVVFHDNHFPYPTINQNAHAAN-LPINISLIPP-HTILSLNP-------- 354
            P T +IY SRHVVF +N  P+ +I  + H  +  P+  +     H +    P        
Sbjct: 727  PPTGRIYISRHVVFDENTHPFESIYSHLHPQDKTPLLEAWFKSFHHVTPTQPDQSRYPVS 786

Query: 355  TIPPPQ------APNSLMATTP---------------------PTPEAILQEAPLSPSTS 387
            +IP P+      AP S+ A T                      P     L  A +  S  
Sbjct: 787  SIPQPETTDLSAAPASVAAETAGPNASDDTSQDNETISVVSGSPERTTGLDSASIGDSYH 846

Query: 388  SGNESSPSPSPTNNSIA-------LTNPPAD---SNATNH--IITRSQNNIFKPKKFFYA 435
            S    S  PSP  +S A       +   PA    +  TN   ++TR +  I KP K +  
Sbjct: 847  SPTADSSHPSPARSSPASSPQGSPIQMAPAQQVQAPVTNEHAMVTRGKEGISKPNKRYVL 906

Query: 436  SNHPLPENLEPSNVRQAMQHPHWRQAISEEFNALIRNGTWSLVPPPKNKNIVDCKWLFRI 495
              H +    EP  V +A++HP W  A+ EE        TW+LVP   N N++   W+FR 
Sbjct: 907  LTHKVSIP-EPKTVTEALKHPGWNNAMQEEMGNCKETETWTLVPYSPNMNVLGSMWVFRT 965

Query: 496  KRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDV 555
            K + DG++D  KARLVAKGF Q  G+D+ ET++PVVR  T++LIL +A    W++ Q+DV
Sbjct: 966  KLHADGSLDKLKARLVAKGFKQEEGIDYLETYSPVVRTPTVRLILHVATVLKWELKQMDV 1025

Query: 556  NNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGF 615
             NAFL G L E VYM QP G  D  +P +VC LHK++YGL+Q+PRAW D    F+   GF
Sbjct: 1026 KNAFLHGDLTETVYMRQPAGFVDKSKPDHVCLLHKSLYGLKQSPRAWFDRFSNFLLEFGF 1085

Query: 616  TTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYF 675
              S  DPSLF+Y+S   +   L+YVDD+++TGN++  L H + +L+  F +K MG  HYF
Sbjct: 1086 ICSLFDPSLFVYSSNNDVILLLLYVDDMVITGNNSQSLTHLLAALNKEFRMKDMGQVHYF 1145

Query: 676  LGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYR 735
            LGI++      LF+SQ K+  D+L    M    P  TPL        N     +D T +R
Sbjct: 1146 LGIQIQTYDGGLFMSQQKYAEDLLITASMANCSPMPTPLPLQLDRVSNQDEVFSDPTYFR 1205

Query: 736  QIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNA 795
             + G LQYL LTRPD+ FA+N + Q MH+P+   F  LKR+LRY+K T++ GI     ++
Sbjct: 1206 SLAGKLQYLTLTRPDIQFAVNFVCQKMHQPSVSDFNLLKRILRYIKGTVSMGIQYNSNSS 1265

Query: 796  ---------LTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQRTVARSSTEAE 846
                       L  Y+D+D+    + R S   Y  + G N ISW S+KQ TV+RSSTEAE
Sbjct: 1266 SVVSAYESDYDLSAYSDSDYANCKETRRSVGGYCTFMGQNIISWSSKKQPTVSRSSTEAE 1325

Query: 847  YRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHF 906
            YR+++   +EI W++++L E+ + L   P L CDN+ A YL +NP  H++ KH  +D+H+
Sbjct: 1326 YRSLSETASEIKWMSSILREIGVSLPDTPELFCDNLSAVYLTANPAFHARTKHFDVDHHY 1385

Query: 907  VREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKV 949
            +RE+V    L V H+    QLAD+ TK LP   F  LR K+ V
Sbjct: 1386 IRERVALKTLVVKHIPGHLQLADIFTKSLPFEAFTRLRFKLGV 1428



 Score =  138 bits (347), Expect = 2e-32
 Identities = 99/342 (28%), Positives = 155/342 (44%), Gaps = 46/342 (13%)

Query: 3   QFNALLIGYDLFGFVDGTKPEPA-------------EKHVDYNYWRRQDKLILHAILSSV 49
           QF + L G  L GFV G+   PA             E + ++  W + D+++   +L S 
Sbjct: 30  QFESFLSGQGLLGFVTGSISAPAQTRSVTHNNVTSEEPNPEFYTWHQTDQVVKSWLLGSF 89

Query: 50  EASIITMLGNVKNSKDAWDILNKMFASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAI 109
              I++++ N   S   W  L   F   + +R+  L+ RL    K   ++  +L+ +K I
Sbjct: 90  AEDILSVVVNCFTSHQVWLTLANHFNRVSSSRLFELQRRLQTLEKKDNTMEVFLKDLKHI 149

Query: 110 SDELAIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTREN---AIAFDELHDILVDHETF 166
            D+LA +  P+ +   +  A NGLG E++ I   +    +   +++ DE+   L  ++  
Sbjct: 150 CDQLASVGSPVPEKMKIFSALNGLGREYEPIKTTIENSVDSNPSLSLDEVASKLRGYDDR 209

Query: 167 LQR-DQEPTIIP--TAQVAYRGKPKYHKNG--------------------SFHNHINPSV 203
           LQ    EPTI P     V +     YH N                      FH  I+P+ 
Sbjct: 210 LQSYVTEPTISPHVAFNVTHSDSGYYHNNNRGKGRSNSGSGKSSFSTRGRGFHQQISPT- 268

Query: 204 NNISDSQGQQKQVMCQFCDKSGHTAKEC-YKIHGYPSKNGVRSAAHSARYTPHTDE--TD 260
              S SQ     ++CQ C K+GH A +C ++         +  A  + R T  TD    +
Sbjct: 269 ---SGSQAGNSGLVCQICGKAGHHALKCWHRFDNSYQHEDLPMALATMRITDVTDHHGHE 325

Query: 261 WILDSGATHHLTNNLDDLHITNPYHGSDKIIIGDGNTLPISH 302
           WI DS A+ H+TNN   L  + PYHGSD I++ DGN LPI+H
Sbjct: 326 WIPDSAASAHVTNNRHVLQQSQPYHGSDSIMVADGNFLPITH 367


>At2g13940 putative retroelement pol polyprotein
          Length = 1501

 Score =  448 bits (1152), Expect = e-126
 Identities = 266/705 (37%), Positives = 373/705 (52%), Gaps = 60/705 (8%)

Query: 304  DPKTNKIYTSRHVVFHDNHFPYPTINQNAHAANLPINIS-----LIPP------------ 346
            D + N+   SR V+F +  FPY  +N +  A+     +S      IPP            
Sbjct: 791  DIERNEFLVSRDVIFREEVFPYAGVNSSTLASTSLPTVSEDDDWAIPPLEVRGSIDSVET 850

Query: 347  --------HTILSLN------------PTIPPPQAPNSLMAT----TPPTP--EAILQEA 380
                      +L  +            P   PP +P S+  +    TP TP    +    
Sbjct: 851  ERVVCTTDEVVLDTSVSDSEIPNQEFVPDDTPPSSPLSVSPSGSPNTPTTPIVVPVASPI 910

Query: 381  PLSPSTSSGNESSPSPSPTNNSIALTNPPADSNATNHI-ITRSQNNIFKPKKFF------ 433
            P+SP     ++ +  P P  N   L N     ++ + +    SQ++    K  F      
Sbjct: 911  PVSPPKQRKSKRATHPPPKLNDYVLYNAMYTPSSIHALPADPSQSSTVPGKSLFPLTDYV 970

Query: 434  ----YASNH-----PLPENLEPSNVRQAMQHPHWRQAISEEFNALIRNGTWSLVPPPKNK 484
                ++S+H      + +N+EP + ++A+Q   W  A+  E +AL  N TW +V  P  K
Sbjct: 971  SDAAFSSSHRAYLAAITDNVEPKHFKEAVQIKVWNDAMFTEVDALEINKTWDIVDLPPGK 1030

Query: 485  NIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILTIAL 544
              +  +W+F+ K N DGT++ YKARLV +G  Q  G D+KETFAPVVR  T++ +L    
Sbjct: 1031 VAIGSQWVFKTKYNSDGTVERYKARLVVQGNKQVEGEDYKETFAPVVRMTTVRTLLRNVA 1090

Query: 545  TKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYGLRQAPRAWHD 604
               W+++Q+DV+NAFL G L EEVYM  PPG + S  P  VC+L K++YGL+QAPR W  
Sbjct: 1091 ANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGFRHS-HPDKVCRLRKSLYGLKQAPRCWFK 1149

Query: 605  ALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRF 664
             L   +   GF  S  D SLF Y         L+YVDDLL+ GND   L  F   LS  F
Sbjct: 1150 KLSDSLLRFGFVQSYEDYSLFSYTRNNIELRVLIYVDDLLICGNDGYMLQKFKDYLSRCF 1209

Query: 665  SLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPLSTTSTLTLND 724
            S+K +G   YFLGIE+      +FLSQ K+  D++       ++P +TPL     L  +D
Sbjct: 1210 SMKDLGKLKYFLGIEVSRGPEGIFLSQRKYALDVIADSGNLGSRPAHTPLEQNHHLASDD 1269

Query: 725  GTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLKRLLRYLKATI 784
            G   +D   YR+++G L YL  TRP+LS++++ L+QFM  P   HF    R++RYLK + 
Sbjct: 1270 GPLLSDPKPYRRLVGRLLYLLHTRPELSYSVHVLAQFMQNPREAHFDAALRVVRYLKGSP 1329

Query: 785  NFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQRTVARSSTE 844
              GILL     LTL+VY D+DW      R S SAY++  GG+PISW ++KQ TV+ SS E
Sbjct: 1330 GQGILLNADPDLTLEVYCDSDWQSCPLTRRSISAYVVLLGGSPISWKTKKQDTVSHSSAE 1389

Query: 845  AEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDY 904
            AEYRA++ A  EI W+  LL EL I  S P  L CD+  A ++ +NPV H + KHI  D 
Sbjct: 1390 AEYRAMSYALKEIKWLRKLLKELGIEQSTPARLYCDSKAAIHIAANPVFHERTKHIESDC 1449

Query: 905  HFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKV 949
            H VR+ VRDG +   HV T +QLAD+ TK L R +F  L SK+ V
Sbjct: 1450 HSVRDAVRDGIITTQHVRTTEQLADVFTKALGRNQFLYLMSKLGV 1494



 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 53/260 (20%), Positives = 109/260 (41%), Gaps = 31/260 (11%)

Query: 15  GFVDGTKPEPAEKHVDYNYWRRQDKLILHAILSSVEASIITMLGNVKNSKDAWDILNKMF 74
           GF++GT P P     +Y  W   + +I+  I +S+E  +   +  + ++   W  L + F
Sbjct: 72  GFINGTIPRPPPNDPNYENWTAVNSMIVGWIRTSIEPKVKATVTFISDAHLLWKDLKQRF 131

Query: 75  ASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDELAIINKPID------------- 121
           +   + RI  ++ +L+   +  ++V EY   +  + +E  I  KP+              
Sbjct: 132 SVGNKVRIHQIRAQLSSCRQDGQAVIEYYGRLSNLWEEYNIY-KPVTVCTCGLCRCGATS 190

Query: 122 ------DDDLVIHAPNGLG-SEFKEIAAALRTRENAIAFDELHDILVDHETFLQ----RD 170
                 +++ +     GL  S F  + A L   +   +  E++  ++  E  L     R+
Sbjct: 191 EPTKEREEEKIHQFVLGLDESRFGGLCATLINMDPLPSLGEIYSRVIREEQRLASVHVRE 250

Query: 171 QEPTIIPTAQVAYRGKPKYHKNGSFHNHINPSVNNISDSQGQQKQVMCQFCDKSGHTAKE 230
           Q+   +    +A R +  +H      +  +        +   + +V C  C ++GH  KE
Sbjct: 251 QKEEAV--GFLARREQLDHHSRVDASSSRSEHTGGSRSNSIIKGRVTCSNCGRTGHEKKE 308

Query: 231 CYKIHGYP----SKNGVRSA 246
           C++I G+P     +NG R +
Sbjct: 309 CWQIVGFPDWWSERNGGRGS 328



 Score = 33.5 bits (75), Expect = 0.59
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 239 SKNGVRSAAHSARYTPHTDETDWILDSGATHHLTNNLDDL 278
           S +G  S  +S R +  T   D ILDSGA+HH+T  L  L
Sbjct: 379 SNSGSTSNNNSDRLSGKTKLGDIILDSGASHHMTGTLSSL 418


>At4g10990 putative retrotransposon polyprotein
          Length = 1203

 Score =  444 bits (1141), Expect = e-124
 Identities = 250/688 (36%), Positives = 383/688 (55%), Gaps = 69/688 (10%)

Query: 303  VDPKTNKIYTSRHVVFHDNHFPYPTINQNAHAANLPINISLIPPHTILSLNPTIPPPQAP 362
            +D +++ I  +R+VVFH+  FP+ T      +  L  ++ + P       N  +P P AP
Sbjct: 345  LDLESHSISITRNVVFHETKFPFKT------SKFLKESVDMFP-------NSILPLP-AP 390

Query: 363  NSLMATTPPTPEAILQEAPLSPSTSSGNESS--PSPSPTN-----------NSIALTNPP 409
               + + P   +    +   S S S+ + SS  P PS  N           NS+ +  P 
Sbjct: 391  LHFVESMPLDDDLRADDNNASTSNSASSASSIPPLPSTVNTQNTDALDIDTNSVPIARPK 450

Query: 410  ADSNATNHIITRSQNNI--------------------FKPKKFF----------YASNHP 439
             ++ A  ++     N++                      PKK            Y    P
Sbjct: 451  RNAKAPAYLSEYHCNSVPFLSSLSPTTSTSIETPSSSIPPKKITTPYPMSTAISYDKLTP 510

Query: 440  LPENL--------EPSNVRQAMQHPHWRQAISEEFNALIRNGTWSLVPPPKNKNIVDCKW 491
            L  +         EP    QAM+   W +A +EE +AL +N TW +    + KN+V CKW
Sbjct: 511  LFHSYICAYNVETEPKAFTQAMKSEKWTRAANEELHALEQNKTWIVESLTEGKNVVGCKW 570

Query: 492  LFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILTIALTKGWKMH 551
            +F IK NPDG+I+ YKARLVA+GFTQ  G+D+ ETF+PV +  ++KL+L +A   GW + 
Sbjct: 571  VFTIKYNPDGSIERYKARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAATGWSLT 630

Query: 552  QLDVNNAFLQGSLNEEVYMAQPPGLKD----SQQPTYVCKLHKAIYGLRQAPRAWHDALK 607
            Q+DV+NAFL G L+EE+YM+ P G       S     VC+L K++YGL+QA R W+  L 
Sbjct: 631  QMDVSNAFLHGELDEEIYMSLPQGYTPPTGISLPSKPVCRLLKSLYGLKQASRQWYKRLS 690

Query: 608  TFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFSLK 667
            +      F  S +D ++F+  S T++   LVYVDDL++  ND+S + +  + L + F +K
Sbjct: 691  SVFLGANFIQSPADNTMFVKVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIK 750

Query: 668  HMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPLSTTSTLTLNDGTA 727
             +G   +FLG+E+  S   + + Q K+ +++L+   +   KP+  P+     LT   GT 
Sbjct: 751  DLGPARFFLGLEIARSSEGISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTL 810

Query: 728  AADSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLKRLLRYLKATINFG 787
              ++T YR+++G L YL +TRPD++FA++ LSQF+  PT +H Q   ++LRYLK     G
Sbjct: 811  LPNATSYRELVGRLLYLCITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQG 870

Query: 788  ILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQRTVARSSTEAEY 847
            ++   ++ L L  ++DADW    D R S + + IY G + I+W S+KQ  V+RSSTE+EY
Sbjct: 871  LMYSASSELCLNGFSDADWGTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEY 930

Query: 848  RAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFV 907
            R++A AT EI+W+  LL +LH+ ++ P  L CDN  A +L +NPV H + KHI +D H V
Sbjct: 931  RSLAQATCEIIWLQQLLKDLHVTMTCPAKLFCDNKSALHLATNPVFHERTKHIEIDCHTV 990

Query: 908  REQVRDGKLQVSHVSTKDQLADLLTKPL 935
            R+Q++ GKL+  HV T +QLAD+LTKPL
Sbjct: 991  RDQIKAGKLKTLHVPTGNQLADILTKPL 1018


>At4g27200 putative protein
          Length = 819

 Score =  439 bits (1130), Expect = e-123
 Identities = 256/684 (37%), Positives = 368/684 (53%), Gaps = 56/684 (8%)

Query: 305 PKTNKIYTSRHVVFHDNHFPYPTINQNAH--------AANLPINISLIP----------- 345
           P T ++Y SRHV+F ++ +P+    ++ H        AA L  + S  P           
Sbjct: 54  PPTGRLYISRHVIFDESVYPFSHTYKHLHPQPRTPLLAAWLRSSDSPAPSTSTSPSSRSP 113

Query: 346 ----------PHTILSLNPTIPP-PQAPNSLMATTPPTPEAILQEAPLSPSTSSGNESSP 394
                     P     L PT+ P     ++   TT  +P+   +      S S G+ S  
Sbjct: 114 LFTSADFPPLPQRKTPLLPTLVPISSVSHASNITTQQSPDFDSERTTDFDSASIGDSSHS 173

Query: 395 SPSPTNN-------SIALTNPPADSNATNHIITRSQNNIFKPKKFFYASNHPLPENLEPS 447
           S + +++       S+ +   PA +N  + ++TR++  I KP   +   +H +    EP 
Sbjct: 174 SQAGSDSEETIQQASVNVHQTPASTNV-HPMVTRAKVGISKPNPRYVFLSHKVSYP-EPK 231

Query: 448 NVRQAMQHPHWRQAISEEFNALIRNGTWSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYK 507
            V  A++HP W  A++EE        TWSLVP   + +++  KW+FR K + DGT++  K
Sbjct: 232 TVTAALKHPGWTGAMTEEIGNCSETQTWSLVPYKSDMHVLGSKWVFRTKLHADGTLNKLK 291

Query: 508 ARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEE 567
           AR+VAKGF Q  G+D+ ET++PVVR  T++L+L +A    W + Q+DV NAFL G L E 
Sbjct: 292 ARIVAKGFLQEEGIDYLETYSPVVRTPTVRLVLHLATALNWDIKQMDVKNAFLHGDLKET 351

Query: 568 VYMAQPPGLKDSQQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIY 627
           VYM QP   +D     +VC LHK+IYGL+Q+PRAW D   TF+   GF   +SDPSLFIY
Sbjct: 352 VYMTQPAANRD-----HVCLLHKSIYGLKQSPRAWFDKFSTFLLEFGFFCRKSDPSLFIY 406

Query: 628 ASGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHY-FLGIELIPSKTV 686
           A    L   L+           +  L   + +L+  F +  MG     FLGI++   +  
Sbjct: 407 AHNNNLILLLL-----------SQTLTSLLAALNKEFRMTDMGQHSLTFLGIQVQRQQNG 455

Query: 687 LFLSQHKFIRDILQRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNL 746
           LF+SQ K+  D+L    M+   P  TPL        +     +D T +R I G LQYL L
Sbjct: 456 LFMSQQKYAEDLLIAASMEHCTPLPTPLPVQLDRVPHQEELFSDPTYFRSIAGKLQYLTL 515

Query: 747 TRPDLSFAINKLSQFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADW 806
           TRPD+ FA+N + Q MH+PT   F  LKR+LRY+K TI  GI   + +   LQ Y+D+DW
Sbjct: 516 TRPDIQFAVNFVCQKMHQPTISDFHLLKRILRYIKGTITMGISYSRDSPTLLQAYSDSDW 575

Query: 807 DGNIDDRTSTSAYLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSE 866
                 R S      + G N +SW S+K  TV+RSSTEAEY++++ A +EI+W++ LL E
Sbjct: 576 GNCKQTRRSVGGLCTFMGTNLVSWSSKKHPTVSRSSTEAEYKSLSDAASEILWLSTLLRE 635

Query: 867 LHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQ 926
           L IPL   P L CDN+ A YL +NP  H++ KH  +D+HFVRE+V    L V H+   +Q
Sbjct: 636 LRIPLPDTPELFCDNLSAVYLTANPAFHARTKHFDIDFHFVRERVALKALVVKHIPGSEQ 695

Query: 927 LADLLTKPLPRAKFEELRSKMKVT 950
           +AD+ TK LP   F  LR K+ VT
Sbjct: 696 IADIFTKSLPYEAFIHLRGKLGVT 719


>At2g23330 putative retroelement pol polyprotein
          Length = 1496

 Score =  436 bits (1122), Expect = e-122
 Identities = 268/737 (36%), Positives = 380/737 (51%), Gaps = 98/737 (13%)

Query: 304  DPKTNKIYTSRHVVFHDNHFPYPTINQNAHAANLPINISLIPPHT-------ILSLNPTI 356
            D +T KI+ SR V FH++ +PY T  Q+        N+ L PP          L ++  +
Sbjct: 764  DLETGKIFASRDVRFHEDIYPYATATQS--------NVPLPPPTPPMVNDDWFLPISTQV 815

Query: 357  ---------------------PPPQAPNSLMATTPPTPEAILQEAPLS-PSTS------- 387
                                 PP     S   +T P PE I    P S PS S       
Sbjct: 816  DSTNVDSSSSSSPAQSGSIDQPPRSIDQSPSTSTNPVPEEIGSIVPSSSPSRSIDRSTSD 875

Query: 388  ----------SGNESSPSPSP------------TNNSIAL----TNPPADSNATNHII-- 419
                      S  ESS   SP               S+ L    TN  +     +H I  
Sbjct: 876  LSASDTTELLSTGESSTPSSPGLPELLGKGCREKKKSVLLKDFVTNTTSKKKTASHNIHS 935

Query: 420  ----------------TRSQNNIFKPKKFF----YASNH-----PLPENLEPSNVRQAMQ 454
                            + S   ++    F     Y++NH      + ++ EP + + A+ 
Sbjct: 936  PSQVLPSGLPTSLSADSVSGKTLYPLSDFLTNSGYSANHIAFMAAILDSNEPKHFKDAIL 995

Query: 455  HPHWRQAISEEFNALIRNGTWSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKG 514
               W +A+S+E +AL  N TW +   P  K  +  KW++++K N DGT++ +KARLV  G
Sbjct: 996  IKEWCEAMSKEIDALEANHTWDITDLPHGKKAISSKWVYKLKYNSDGTLERHKARLVVMG 1055

Query: 515  FTQCPGVDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPP 574
              Q  GVDFKETFAPV +  T++ IL +A  K W++HQ+DV+NAFL G L EEVYM  PP
Sbjct: 1056 NHQKEGVDFKETFAPVAKLTTVRTILAVAAAKDWEVHQMDVHNAFLHGDLEEEVYMRLPP 1115

Query: 575  GLKDSQQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLA 634
            G K S  P+ VC+L K++YGL+QAPR W   L T + + GFT S  D SLF   +G T+ 
Sbjct: 1116 GFKCSD-PSKVCRLRKSLYGLKQAPRCWFSKLSTALRNIGFTQSYEDYSLFSLKNGDTII 1174

Query: 635  YFLVYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKF 694
            + LVYVDDL++ GN+   +  F   L   F +K +G   YFLG+E+        LSQ K+
Sbjct: 1175 HVLVYVDDLIVAGNNLDAIDRFKSQLHKCFHMKDLGKLKYFLGLEVSRGPDGFCLSQRKY 1234

Query: 695  IRDILQRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFA 754
              DI++   +   KP+  P++    L    G    +   YR+++G   YL +TRPDLS+A
Sbjct: 1235 ALDIVKETGLLGCKPSAVPIALNHKLASITGPVFTNPEQYRRLVGRFIYLTITRPDLSYA 1294

Query: 755  INKLSQFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRT 814
            ++ LSQFM  P   H++   RL+RYLK +   GI L+  ++L +  Y D+D++     R 
Sbjct: 1295 VHILSQFMQAPLVAHWEAALRLVRYLKGSPAQGIFLRSDSSLIINAYCDSDYNACPLTRR 1354

Query: 815  STSAYLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKP 874
            S SAY++Y G +PISW ++KQ TV+ SS EAEYRA+A    E+ W+  LL +L +  S P
Sbjct: 1355 SLSAYVVYLGDSPISWKTKKQDTVSYSSAEAEYRAMAYTLKELKWLKALLKDLGVHHSSP 1414

Query: 875  PLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKP 934
              L CD+  A ++ +NPV H + KHI  D H VR+ V D  +   H+ T+DQ+ADLLTK 
Sbjct: 1415 MKLHCDSEAAIHIAANPVFHERTKHIESDCHKVRDAVLDKLITTEHIYTEDQVADLLTKS 1474

Query: 935  LPRAKFEELRSKMKVTD 951
            LPR  FE L S + VTD
Sbjct: 1475 LPRPTFERLLSTLGVTD 1491



 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 49/238 (20%), Positives = 99/238 (41%), Gaps = 33/238 (13%)

Query: 15  GFVDGTKPEPAEKHVDYNYWRRQDKLILHAILSSVEASIITMLGNVKNSKDAWDILNKMF 74
           GF+DG+ P+PA    + + W   + +I+  I +S++ +I + +G V  +   W+ L + F
Sbjct: 62  GFIDGSIPKPAADP-ELSLWIAINSMIVGWIRTSIDPTIRSTVGFVSEASQLWENLRRRF 120

Query: 75  ASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDELAIINKPID------------- 121
           +     R   LK+ +   ++  + V  Y   +  + +EL       +             
Sbjct: 121 SVGNGVRKTLLKDEIAACTQDGQPVLAYYGRLIKLWEELQNYKSGRECKCEAASDIEKER 180

Query: 122 DDDLVIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQEPTIIPTAQV 181
           +DD V     GL S F  I +++   E      +++  +V  E  L   +   ++ T  +
Sbjct: 181 EDDRVHKFLLGLDSRFSSIRSSITDIEPLPDLYQVYSRVVREEQNLNASRTKDVVKTEAI 240

Query: 182 AYRGKPKYHKNGSFHNHINPSVNNISDSQGQQKQVM-CQFCDKSGHTAKECYKIHGYP 238
            +                  SV + +  + + K  + C  C++ GH   +C+ +HGYP
Sbjct: 241 GF------------------SVQSSTTPRFRDKSTLFCTHCNRKGHEVTQCFLVHGYP 280



 Score = 32.7 bits (73), Expect = 1.0
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 244 RSAAHSARYTPHTDETDWILDSGATHHLTNNLDDLHITNPYHGSDKIIIGDGNTLPISHV 303
           R ++ S R + +T  TD ++D+GA+HH+T +   L           + + D    P++  
Sbjct: 354 RPSSSSERLSGNTCLTDGVIDTGASHHMTGDCSIL-----------VDVFDITPSPVTKP 402

Query: 304 DPKTNKIYTSRHVVFHDNH 322
           D K ++      ++ HD++
Sbjct: 403 DGKASQATKCGTLLLHDSY 421


>At1g70010 hypothetical protein
          Length = 1315

 Score =  432 bits (1111), Expect = e-121
 Identities = 250/669 (37%), Positives = 372/669 (55%), Gaps = 54/669 (8%)

Query: 303  VDPKTNKIYTSRHVVFHDNHFPYPTINQNAHAANLPINISLIPPHTILSLNPTIPPPQAP 362
            +D +T+ I  SRHVVFH+  FP+           L  ++S    +    LNPT PP Q  
Sbjct: 668  LDLETHSIIVSRHVVFHEELFPF-----------LGSDLSQEEQNFFPDLNPT-PPMQRQ 715

Query: 363  NSLMATTPPTPEAILQEAPLSPSTSSGN-ESSPSPSPTNN----SIALTNPPADSNA--- 414
            +S                 ++PS SS + E  PS +PTNN    S+  ++  A   A   
Sbjct: 716  SS---------------DHVNPSDSSSSVEILPSANPTNNVPEPSVQTSHRKAKKPAYLQ 760

Query: 415  ----------TNHIITR--SQNNIFKPKKFFYASNHPLPENLEPSNVRQAMQHPHWRQAI 462
                      T H I +  S + I  P   F A    L +  EPSN  +A +   WR A+
Sbjct: 761  DYYCHSVVSSTPHEIRKFLSYDRINDPYLTFLAC---LDKTKEPSNYTEAEKLQVWRDAM 817

Query: 463  SEEFNALIRNGTWSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVD 522
              EF+ L    TW +   P +K  + C+W+F+IK N DG+++ YKARLVA+G+TQ  G+D
Sbjct: 818  GAEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGID 877

Query: 523  FKETFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLK----D 578
            + ETF+PV +  ++KL+L +A      + QLD++NAFL G L+EE+YM  P G      D
Sbjct: 878  YNETFSPVAKLNSVKLLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGD 937

Query: 579  SQQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLV 638
            S  P  VC+L K++YGL+QA R W+    + +   GF  S  D + F+  S       LV
Sbjct: 938  SLPPNAVCRLKKSLYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCFLKISDGIFLCVLV 997

Query: 639  YVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDI 698
            Y+DD+++  N+ + +      + + F L+ +G   YFLG+E++ S   + +SQ K+  D+
Sbjct: 998  YIDDIIIASNNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDKGIHISQRKYALDL 1057

Query: 699  LQRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKL 758
            L        KP+  P+  +     + G    +   YR++IG L YLN+TRPD++FA+NKL
Sbjct: 1058 LDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFAVNKL 1117

Query: 759  SQFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSA 818
            +QF   P   H Q + ++L+Y+K TI  G+    T+ L L+VY +AD++   D R STS 
Sbjct: 1118 AQFSMAPRKAHLQAVYKILQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDSRRSTSG 1177

Query: 819  YLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLL 878
            Y ++ G + I W SRKQ  V++SS EAEYR+++ AT E++W+TN L EL +PLSKP LL 
Sbjct: 1178 YCMFLGDSLICWKSRKQDVVSKSSAEAEYRSLSVATDELVWLTNFLKELQVPLSKPTLLF 1237

Query: 879  CDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRA 938
            CDN  A ++ +N V H + KHI  D H VRE++  G  ++ H++T+ Q+AD  TKPL  +
Sbjct: 1238 CDNEAAIHIANNHVFHERTKHIESDCHSVRERLLKGLFELYHINTELQIADPFTKPLYPS 1297

Query: 939  KFEELRSKM 947
             F  L SKM
Sbjct: 1298 HFHRLISKM 1306



 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 54/236 (22%), Positives = 102/236 (42%), Gaps = 25/236 (10%)

Query: 15  GFVDGTKPEPAEKHVDYNYWRRQDKLILHAILSSVEASIITMLGNVKNSKDAWDILNKMF 74
           GFVDG+ P+P +       WRR + ++   +L+SV   I T +     +   W  L   F
Sbjct: 12  GFVDGSIPKPDDDDPYCKIWRRCNSMVKSWLLNSVSKEIYTSILYFPTAAAIWKDLYTRF 71

Query: 75  ASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDELAIINK-PIDDDDLVIHAPN-- 131
              +  R+  L++++    +G+  +S Y    + + +EL  +   P   +DL+I      
Sbjct: 72  HKSSLPRLYKLRQQIHSLRQGNLDLSSYHTRTQTLWEELTSLQAVPRTVEDLLIERETNR 131

Query: 132 ------GLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQEPTIIP--TAQVAY 183
                 GL   +  + + +  ++   +  E+ +++   ET  QR    +  P  T+ V  
Sbjct: 132 VIDFLMGLNDCYDTVRSQILMKKTLPSLSEVFNMIDQDET--QRSARISTTPGMTSSVF- 188

Query: 184 RGKPKYHKNGSFHNHINPSVNNISDSQGQQKQVMCQFCDKSGHTAKECYKIHGYPS 239
                        N  + S  N  D+  ++++ +C +C + GH    CYK HGYP+
Sbjct: 189 ----------PVSNQSSQSALN-GDTYQKKERPVCSYCSRPGHVEDTCYKKHGYPT 233


>At2g20460 putative retroelement pol polyprotein
          Length = 1461

 Score =  431 bits (1107), Expect = e-120
 Identities = 237/652 (36%), Positives = 364/652 (55%), Gaps = 33/652 (5%)

Query: 303  VDPKTNKIYTSRHVVFHDNHFPYPTINQNAHAANLPINISLIPPHTILSLNPTIPPPQAP 362
            +D ++N ++ SR+V FH+  FP  +  Q+A  A+  +   + P  +  S+   +P PQ  
Sbjct: 830  LDLESNVVHISRNVEFHEELFPLASSQQSATTAS-DVFTPMDPLSSGNSITSHLPSPQ-- 886

Query: 363  NSLMATTPPTPEAILQEAPLSPSTS-SGNESSPSPSPTNNSIALTNPPADSNATNHIITR 421
                               +SPST  S    +  P+   +         DS+  +  ++ 
Sbjct: 887  -------------------ISPSTQISKRRITKFPAHLQDYHCYFVNKDDSHPISSSLSY 927

Query: 422  SQNNIFKPKKFFYASNHPLPENLEPSNVRQAMQHPHWRQAISEEFNALIRNGTWSLVPPP 481
            SQ     P    Y +N  + +   P +  +A     W  AI +E  A+ R  TW +   P
Sbjct: 928  SQ---ISPSHMLYINN--ISKIPIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLP 982

Query: 482  KNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILT 541
              K  V CKW+F +K + DG+++ +KAR+VAKG+TQ  G+D+ ETF+PV +  T+KL+L 
Sbjct: 983  PGKKAVGCKWVFTVKFHADGSLERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLK 1042

Query: 542  IALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKD----SQQPTYVCKLHKAIYGLRQ 597
            ++ +K W ++QLD++NAFL G L E +YM  P G  D    S  P  VC+L K+IYGL+Q
Sbjct: 1043 VSASKKWYLNQLDISNAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQ 1102

Query: 598  APRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLHHFI 657
            A R W       + + GF     D +LF+   G+     LVYVDD+++            
Sbjct: 1103 ASRQWFLKFSNSLLALGFEKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLT 1162

Query: 658  QSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPLSTT 717
            ++L   F L+ +G   YFLG+E+  +   + LSQ K+  ++L   DM   KP+  P++  
Sbjct: 1163 EALKASFKLRELGPLKYFLGLEVARTSEGISLSQRKYALELLTSADMLDCKPSSIPMTPN 1222

Query: 718  STLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLKRLL 777
              L+ NDG    D  +YR+++G L YL +TRPD++FA+NKL QF   P + H   + ++L
Sbjct: 1223 IRLSKNDGLLLEDKEMYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVL 1282

Query: 778  RYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQRT 837
            +Y+K T+  G+     + LTL+ YTDADW    D R ST+ + ++ G + ISW S+KQ T
Sbjct: 1283 QYIKGTVGQGLFYSAEDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPT 1342

Query: 838  VARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKM 897
            V+RSS EAEYRA+A A+ E+ W++ LL  L +  S  P+L  D+  A Y+ +NPV H + 
Sbjct: 1343 VSRSSAEAEYRALALASCEMAWLSTLLLALRVH-SGVPILYSDSTAAVYIATNPVFHERT 1401

Query: 898  KHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKMKV 949
            KHI +D H VRE++ +G+L++ HV TKDQ+AD+LTKPL   +F  L SKM +
Sbjct: 1402 KHIEIDCHTVREKLDNGQLKLLHVKTKDQVADILTKPLFPYQFAHLLSKMSI 1453



 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 56/240 (23%), Positives = 96/240 (39%), Gaps = 28/240 (11%)

Query: 15  GFVDGTKPEPAEKHVDYNYWRRQDKLILHAILSSVEASIITMLGNVKNSKDAWDILNKMF 74
           GFVDG+ P P E   ++  W R + ++   +L+SV   I   +  + ++ D W  L   F
Sbjct: 106 GFVDGSLPRPLESDPNFRLWSRCNSMVKSWLLNSVSPQIYRSILRLNDATDIWRDLFDRF 165

Query: 75  ASKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDELAIINKPIDDDDLVIHAPNGLG 134
                 R  +L + +    +G+ S+SEY   +K + D+L        D    +  P   G
Sbjct: 166 NLTNLPRTYNLTQEIQDLRQGTMSLSEYYTLLKTLWDQL--------DSTEALDDPCTCG 217

Query: 135 SEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQEPTIIPTAQVAYRGKPKYHKNGS 194
              +    A    E A     L  +   +    ++      +P+    Y    + +    
Sbjct: 218 KAVRLYQKA----EKAKIMKFLAGLNESYAIVRRQIIAKKALPSLAEVYHILDQDNSQKG 273

Query: 195 FHNHINP----SVNNISDSQGQQKQVM------------CQFCDKSGHTAKECYKIHGYP 238
           F N + P     V+ +S S     ++M            C FC++ GH A+ CYK HG+P
Sbjct: 274 FFNVVAPPAAFQVSEVSHSPITSPEIMYVQSGPNKGRPTCSFCNRVGHIAERCYKKHGFP 333



 Score = 30.0 bits (66), Expect = 6.5
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 357 PPPQAPNSLMATTPPTPEAILQEAPLSPSTSSGN----ESSPSPSPTNNSIAL 405
           PP   P    +  PP P+A+  +  LSP   +G       + SP    N IAL
Sbjct: 333 PPGFTPKGKSSDKPPKPQAVAAQVTLSPDKMTGQLETLAGNFSPDQIQNLIAL 385


>At1g48710 hypothetical protein
          Length = 1352

 Score =  428 bits (1100), Expect = e-120
 Identities = 234/673 (34%), Positives = 362/673 (53%), Gaps = 45/673 (6%)

Query: 290  IIIG-DGNTLPISHVDPKTNKIYTSRHVVF-HDNHFPYPTINQNAHAANLPINISLIPPH 347
            I IG D N+      +P T K   SR++VF  +  + +   N N    N   +     P 
Sbjct: 721  IFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDW---NSNEEDYNFFPHFEEDEPE 777

Query: 348  TILSLNPTIPPPQAPNSLMATTPPTPEAILQEAPLSPSTSSGNESSPSPSPTNNSIALTN 407
                     P  + P S   TTPPT          SP++S   ESS   +P   SI    
Sbjct: 778  ---------PTREEPPSEEPTTPPT----------SPTSSQIEESSSERTPRFRSIQEL- 817

Query: 408  PPADSNATNHIITRSQNNIFKPKKFFYASNHPLPENLEPSNVRQAMQHPHWRQAISEEFN 467
                     + +T +Q N+         +   L    EP + ++A++   WR A+ EE  
Sbjct: 818  ---------YEVTENQENL---------TLFCLFAECEPMDFQEAIEKKTWRNAMDEEIK 859

Query: 468  ALIRNGTWSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETF 527
            ++ +N TW L   P     +  KW+++ K+N  G ++ YKARLVAKG+ Q  G+D+ E F
Sbjct: 860  SIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGIDYDEVF 919

Query: 528  APVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCK 587
            APV R +T++LI+++A    WK+HQ+DV +AFL G L EEVY+ QP G     +   V +
Sbjct: 920  APVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLR 979

Query: 588  LHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTG 647
            L KA+YGL+QAPRAW+  +  +     F     + +L+I      +    +YVDDL+ TG
Sbjct: 980  LKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTG 1039

Query: 648  NDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAA 707
            N+ S    F + ++  F +  +G   Y+LGIE+      +F++Q  + +++L++F MD +
Sbjct: 1040 NNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDS 1099

Query: 708  KPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTS 767
             P  TP+     L+  +     D T ++ ++G+L+YL  TRPD+ +A+  +S++M  PT+
Sbjct: 1100 NPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTT 1159

Query: 768  LHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNP 827
             HF+  KR+LRY+K T+NFG+    T+   L  Y+D+DW G++DDR STS ++ Y G   
Sbjct: 1160 THFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTA 1219

Query: 828  ISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYL 887
             +W+S+KQ  V  S+ EAEY A  +     +W+ NLL EL +P  +P  +  DN  A  L
Sbjct: 1220 FTWMSKKQPIVVLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIAL 1279

Query: 888  CSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKM 947
              NPV H + KHI   YH++RE V    +Q+ +V T DQ+AD+ TKPL R  F ++RS +
Sbjct: 1280 AKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIKMRSLL 1339

Query: 948  KVTDGNFILRGHI 960
             V   +  LRG +
Sbjct: 1340 GVAKSS--LRGGV 1350



 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 58/285 (20%), Positives = 105/285 (36%), Gaps = 50/285 (17%)

Query: 35  RRQDKLILHAILSSVEASIITMLGNVKNSKDAWDILNKMFASKTRARIMHLK----ERLT 90
           R++DK  L  I   ++      +    ++K+AW+ L   +    + + + L+    E   
Sbjct: 63  RKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEA 122

Query: 91  RTSKGSKSVSEYLQAIKAISDELAIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTREN- 149
              K  + VS+Y   +  +++ L    + +DD  ++      L  +F+ I   +   ++ 
Sbjct: 123 LQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDL 182

Query: 150 -AIAFDELHDILVDHETFLQRDQEPTIIPTA--------------------QVAYRGKPK 188
            A+  ++L   L  +E   ++ ++  II                       QV  RG+  
Sbjct: 183 EAMTIEQLLGSLQAYEE--KKKKKEDIIEQVLNMQITKEENGQSYQRRGGGQVRGRGRGG 240

Query: 189 YHKNGSFHNH---INPSVNNISDSQGQ--------QKQVMCQFCDKSGHTAKEC------ 231
           Y     +  H    N    N S  +G+        +  V C  C K GH A EC      
Sbjct: 241 YGNGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNK 300

Query: 232 ---YKIHGYPSKNGVRSAAHSARYTPHTDETD--WILDSGATHHL 271
               K +    K         A Y     E +  W LDSGA++H+
Sbjct: 301 KFEEKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHM 345


>At4g17450 retrotransposon like protein
          Length = 1433

 Score =  426 bits (1094), Expect = e-119
 Identities = 238/668 (35%), Positives = 355/668 (52%), Gaps = 69/668 (10%)

Query: 303  VDPKTNKIYTSRHVVFHDNHFPY-------------PTINQNAHAANLPIN-ISLIPPHT 348
            +D +T+ +  SRHV+FH++ FP+             P +   A   +LP+   S+I  H 
Sbjct: 805  LDIETHAVSISRHVIFHEDIFPFISSTIKDDIKDFFPLLQFPARTDDLPLEQTSIIDTH- 863

Query: 349  ILSLNPTIPPPQAPNSLMATTPPTPEAILQEAP---LSPSTSSGNESSPSPSPTNNSIAL 405
                     P Q  +S  A  P  P +  Q+ P   L       N + P  +  NN    
Sbjct: 864  ---------PHQDVSSSKALVPFDPLSKRQKKPPKHLQDFHCYNNTTEPFHAFINN---- 910

Query: 406  TNPPADSNATNHIITRSQNNIFKPKKFFYASNHPLPENLEPSNVRQAMQHPHWRQAISEE 465
                     TN +I                          P    +A     W  A+ EE
Sbjct: 911  --------ITNAVI--------------------------PQRYSEAKDFKAWCDAMKEE 936

Query: 466  FNALIRNGTWSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKE 525
              A++R  TWS+V  P NK  + CKW+F IK N DG+I+ YKARLVAKG+TQ  G+D++E
Sbjct: 937  IGAMVRTNTWSVVSLPPNKKAIGCKWVFTIKHNADGSIERYKARLVAKGYTQEEGLDYEE 996

Query: 526  TFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKD----SQQ 581
            TF+PV +  +++++L +A    W +HQLD++NAFL G L+EE+YM  PPG  D    +  
Sbjct: 997  TFSPVAKLTSVRMMLLLAAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPGYADLVGEALP 1056

Query: 582  PTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVD 641
            P  +C+LHK+IYGL+QA R W+  L   +   GF  S +D +LFI  +   L   LVYVD
Sbjct: 1057 PHAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANGVLMGVLVYVD 1116

Query: 642  DLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQR 701
            D+++  N    +  F   L + F L+ +G   YFLGIE+  S+  + + Q K+I ++L  
Sbjct: 1117 DIMIVSNSDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIARSEKGISICQRKYILELLST 1176

Query: 702  FDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQF 761
                 +KP+  PL  +  L   DG    DST YR+++G L YL +TRPD+++A+N L QF
Sbjct: 1177 TGFLGSKPSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKLMYLQITRPDIAYAVNTLCQF 1236

Query: 762  MHKPTSLHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLI 821
             H PTS+H   + ++LRYLK T+  G+     +   L+ YTD+D+    D R   +AY +
Sbjct: 1237 SHAPTSVHLSAVHKVLRYLKGTVGQGLFYSADDKFDLRGYTDSDFGSCTDSRRCVAAYCM 1296

Query: 822  YFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDN 881
            + G   +SW S+KQ TV+ S+ EAE+RA++  T E++W++ L  +  +P   P  L CDN
Sbjct: 1297 FIGDYLVSWKSKKQDTVSMSTAEAEFRAMSQGTKEMIWLSRLFDDFKVPFIPPAYLYCDN 1356

Query: 882  VGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFE 941
              A ++ +N V H + K + LD +  RE V  G L+   V T +Q+AD LTK +  A+F 
Sbjct: 1357 TAALHIVNNSVFHERTKFVELDCYKTREAVESGFLKTMFVETGEQVADPLTKAIHPAQFH 1416

Query: 942  ELRSKMKV 949
            +L  KM V
Sbjct: 1417 KLIGKMGV 1424



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 53/239 (22%), Positives = 94/239 (39%), Gaps = 44/239 (18%)

Query: 16  FVDGTKPEPAEKHVDYNYWRRQDKLILHAILSSVEASIITMLGNVKNSKDAWDILNKMFA 75
           FVDG+ P P      +  W R + ++   +L+ V               + W+ L   F 
Sbjct: 109 FVDGSLPRPDVSDRMFKIWSRCNSMVKTWLLNVVT--------------EMWNDLFSRFR 154

Query: 76  SKTRARIMHLKERLTRTSKGSKSVSEYLQAIKAISDELAI-------------INKPIDD 122
                R   L++ +    +G+  +S Y    K + ++LA              + + +++
Sbjct: 155 VSNLPRKYQLEQSIHTLKQGNLDLSTYYTKKKTLWEQLANTRVLTVRKCNCEHVKELLEE 214

Query: 123 DDL--VIHAPNGLGSEFKEIAAALRTRENAIAFDELHDILVDHETFLQRDQEPTII-PTA 179
            +   +I    GL   F  I   +   +      E++++L D +   +    PT+  PTA
Sbjct: 215 AETSRIIQFLMGLNDNFAHIRGQILNMKPRPGLTEIYNML-DQDESQRLVGNPTLSNPTA 273

Query: 180 QVAYRGKPKYHKNGSFHNHINPSVNNISDSQGQQKQVMCQFCDKSGHTAKECYKIHGYP 238
               +  P           I+  VN    +QG  K+  C +C+K GH   +CYK HGYP
Sbjct: 274 AFQVQASPI----------IDSQVNM---AQGSYKKPKCSYCNKLGHLVDKCYKKHGYP 319



 Score = 34.3 bits (77), Expect = 0.35
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 249 SARYTPHTDETDWILDSGATHHLTNNLD 276
           S    P      W++DSGATHH+T+N D
Sbjct: 420 SVSQEPAVSPRGWVIDSGATHHVTHNRD 447


>At3g61330 copia-type polyprotein
          Length = 1352

 Score =  424 bits (1091), Expect = e-119
 Identities = 232/673 (34%), Positives = 361/673 (53%), Gaps = 45/673 (6%)

Query: 290  IIIG-DGNTLPISHVDPKTNKIYTSRHVVF-HDNHFPYPTINQNAHAANLPINISLIPPH 347
            I IG D N+      +P T K   SR++VF  +  + +   N N    N   +     P 
Sbjct: 721  IFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDW---NSNEEDYNFFPHFEEDEPE 777

Query: 348  TILSLNPTIPPPQAPNSLMATTPPTPEAILQEAPLSPSTSSGNESSPSPSPTNNSIALTN 407
                     P  + P S   TTPPT          SP++S   ESS   +P   SI    
Sbjct: 778  ---------PTREEPPSEEPTTPPT----------SPTSSQIEESSSERTPRFRSIQEL- 817

Query: 408  PPADSNATNHIITRSQNNIFKPKKFFYASNHPLPENLEPSNVRQAMQHPHWRQAISEEFN 467
                     + +T +Q N+         +   L    EP + ++A++   WR A+ EE  
Sbjct: 818  ---------YEVTENQENL---------TLFCLFAECEPMDFQKAIEKKTWRNAMDEEIK 859

Query: 468  ALIRNGTWSLVPPPKNKNIVDCKWLFRIKRNPDGTIDHYKARLVAKGFTQCPGVDFKETF 527
            ++ +N TW L   P     +  KW+++ K+N  G ++ YKARLVAKG++Q  G+D+ E F
Sbjct: 860  SIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVF 919

Query: 528  APVVRPQTIKLILTIALTKGWKMHQLDVNNAFLQGSLNEEVYMAQPPGLKDSQQPTYVCK 587
            APV R +T++LI+++A    WK+HQ+DV +AFL G L EEVY+ QP G     +   V +
Sbjct: 920  APVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLR 979

Query: 588  LHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFLVYVDDLLLTG 647
            L K +YGL+QAPRAW+  +  +     F     + +L+I      +    +YVDDL+ TG
Sbjct: 980  LKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTG 1039

Query: 648  NDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRDILQRFDMDAA 707
            N+ S    F + ++  F +  +G   Y+LGIE+      +F++Q  + +++L++F +D +
Sbjct: 1040 NNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKIDDS 1099

Query: 708  KPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINKLSQFMHKPTS 767
             P  TP+     L+  +     D T ++ ++G+L+YL  TRPD+ +A+  +S++M  PT+
Sbjct: 1100 NPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTT 1159

Query: 768  LHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTSAYLIYFGGNP 827
             HF+  KR+LRY+K T+NFG+    T+   L  Y+D+DW G++DDR STS ++ Y G   
Sbjct: 1160 THFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTA 1219

Query: 828  ISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLLLCDNVGATYL 887
             +W+S+KQ  V  S+ EAEY A  +     +W+ NLL EL +P  +P  +  DN  A  L
Sbjct: 1220 FTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIAL 1279

Query: 888  CSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPRAKFEELRSKM 947
              NPV H + KHI   YH++RE V    +Q+ +V T DQ+AD  TKPL R  F ++RS +
Sbjct: 1280 AKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADFFTKPLKRENFIKMRSLL 1339

Query: 948  KVTDGNFILRGHI 960
             V   +  LRG +
Sbjct: 1340 GVAKSS--LRGGV 1350



 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 58/287 (20%), Positives = 102/287 (35%), Gaps = 54/287 (18%)

Query: 35  RRQDKLILHAILSSVEASIITMLGNVKNSKDAWDILNKMFASKTRARIMHLK----ERLT 90
           R++DK  L  I   ++      +    ++K+AW+ L   +    + + + L+    E   
Sbjct: 63  RKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEA 122

Query: 91  RTSKGSKSVSEYLQAIKAISDELAIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTREN- 149
              K  + VS+Y   +  +++ L    + +DD  ++      L  +F+ I   +   ++ 
Sbjct: 123 LQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDL 182

Query: 150 -AIAFDELHDILVDHE------------------TFLQRDQEPTIIPTAQVAYRGKPKYH 190
            A+  ++L   L  +E                  T  +  Q        QV  RG+  Y 
Sbjct: 183 EAMTIEQLLGSLQAYEEKKKKKEDIAEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYG 242

Query: 191 KNGSFHNH---INPSVNNISDSQGQ--------QKQVMCQFCDKSGHTAKECYKIHGYPS 239
               +  H    N    N S  +G+        +  V C  C K GH A EC      PS
Sbjct: 243 NGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKA----PS 298

Query: 240 KNGVRSAAH---------------SARYTPHTDETDWILDSGATHHL 271
                  AH               S +     +   W LDSGA++H+
Sbjct: 299 NKKFEEKAHYVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHM 345


>At2g04820 putative retroelement pol polyprotein
          Length = 387

 Score =  424 bits (1091), Expect = e-119
 Identities = 207/374 (55%), Positives = 276/374 (73%), Gaps = 1/374 (0%)

Query: 578 DSQQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGFTTSQSDPSLFIYASGTTLAYFL 637
           D  +PT+VC+L+KA+YGL+QAPRAW+  L+ ++ + GFT S +D SLFIY    +  Y L
Sbjct: 11  DRDRPTHVCRLNKALYGLKQAPRAWYQELRNYLLAAGFTNSLADTSLFIYKRANSYLYVL 70

Query: 638 VYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIELIPSKTVLFLSQHKFIRD 697
           VYVDD+++TG DAS + +F  SL++RFSLK +G   YFLGIE   +K  L L Q K+I D
Sbjct: 71  VYVDDIIITG-DASLVKNFNVSLADRFSLKDLGALSYFLGIEATRTKKGLHLMQRKYITD 129

Query: 698 ILQRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYRQIIGALQYLNLTRPDLSFAINK 757
           +L +  M  AKP  TP++TT  L+L+ GT   D+  YR IIG+LQYL+ TRPD++F +N+
Sbjct: 130 LLAKTHMLDAKPISTPMATTPKLSLHSGTILDDAKEYRMIIGSLQYLSFTRPDIAFVVNR 189

Query: 758 LSQFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNALTLQVYTDADWDGNIDDRTSTS 817
           LSQFMHKPT  H+Q  KR+LRYL  T + GI L+    LT+  ++DADW G++ D  ST+
Sbjct: 190 LSQFMHKPTDEHWQAAKRVLRYLAGTKSHGIFLRSDAPLTVHSFSDADWAGDLGDGLSTN 249

Query: 818 AYLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMWITNLLSELHIPLSKPPLL 877
           AY++YFGG+PISW S+KQR  +RSSTEAEYRAVA   +E+ WI +LLSE+ I L   P++
Sbjct: 250 AYIVYFGGSPISWSSKKQRRFSRSSTEAEYRAVANTASELQWICSLLSEMGISLPVAPVV 309

Query: 878 LCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLPR 937
            CDN+GATYLC+NPV HSKMKH++LDYHFVR  ++ G L+VSH+STKDQLAD LTKPL R
Sbjct: 310 YCDNMGATYLCANPVFHSKMKHVALDYHFVRGNIQTGALRVSHLSTKDQLADALTKPLHR 369

Query: 938 AKFEELRSKMKVTD 951
            +F+EL  K+ V +
Sbjct: 370 PRFQELNYKIGVKE 383


>At1g58140 hypothetical protein
          Length = 1320

 Score =  421 bits (1081), Expect = e-117
 Identities = 198/521 (38%), Positives = 311/521 (59%), Gaps = 2/521 (0%)

Query: 440  LPENLEPSNVRQAMQHPHWRQAISEEFNALIRNGTWSLVPPPKNKNIVDCKWLFRIKRNP 499
            + E  EP + ++A++   WR A+ EE  ++ +N TW L   P     +  KW+++ K+N 
Sbjct: 800  IEEKCEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNS 859

Query: 500  DGTIDHYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILTIALTKGWKMHQLDVNNAF 559
             G ++ YKARLVAKG++Q  G+D+ E FAPV R +T++LI+++A    WK+HQ+DV +AF
Sbjct: 860  KGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAF 919

Query: 560  LQGSLNEEVYMAQPPGLKDSQQPTYVCKLHKAIYGLRQAPRAWHDALKTFITSHGFTTSQ 619
            L G L EEVY+ QP G     +   V +L KA+YGL+QAPRAW+  +  +     F    
Sbjct: 920  LNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCP 979

Query: 620  SDPSLFIYASGTTLAYFLVYVDDLLLTGNDASFLHHFIQSLSNRFSLKHMGTPHYFLGIE 679
             + +L+I      +    +YVDDL+ TGN+ S    F + ++  F +  +G   Y+LGIE
Sbjct: 980  YEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIE 1039

Query: 680  LIPSKTVLFLSQHKFIRDILQRFDMDAAKPTYTPLSTTSTLTLNDGTAAADSTLYRQIIG 739
            +      +F++Q  + +++L++F MD + P  TP+     L+  +     D T ++ ++G
Sbjct: 1040 VKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVG 1099

Query: 740  ALQYLNLTRPDLSFAINKLSQFMHKPTSLHFQHLKRLLRYLKATINFGILLKKTNALTLQ 799
            +L+YL  TRPD+ +A+  +S++M  PT+ HF+  KR+LRY+K T+NFG+    T+   L 
Sbjct: 1100 SLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLV 1159

Query: 800  VYTDADWDGNIDDRTSTSAYLIYFGGNPISWLSRKQRTVARSSTEAEYRAVATATAEIMW 859
             Y+D+DW G++DDR STS ++ Y G    +W+S+KQ  V  S+ EAEY A  +     +W
Sbjct: 1160 GYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIW 1219

Query: 860  ITNLLSELHIPLSKPPLLLCDNVGATYLCSNPVLHSKMKHISLDYHFVREQVRDGKLQVS 919
            + NLL EL +P  +P  +  DN  A  L  NPV H + KHI   YH++RE V    +Q+ 
Sbjct: 1220 LRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLE 1279

Query: 920  HVSTKDQLADLLTKPLPRAKFEELRSKMKVTDGNFILRGHI 960
            +V T DQ+AD+ TKPL R  F ++RS + V   +  LRG +
Sbjct: 1280 YVKTHDQVADIFTKPLKREDFIKMRSLLGVAKSS--LRGGV 1318



 Score = 42.7 bits (99), Expect = 0.001
 Identities = 57/285 (20%), Positives = 105/285 (36%), Gaps = 50/285 (17%)

Query: 35  RRQDKLILHAILSSVEASIITMLGNVKNSKDAWDILNKMFASKTRARIMHLK----ERLT 90
           R++DK  L  I   ++      +    ++K+AW+ L   +    + + + L+    E   
Sbjct: 63  RKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEA 122

Query: 91  RTSKGSKSVSEYLQAIKAISDELAIINKPIDDDDLVIHAPNGLGSEFKEIAAALRTREN- 149
              K  + VS+Y   +  +++ L    + +DD  ++      L  +F+ I   +   ++ 
Sbjct: 123 LQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDL 182

Query: 150 -AIAFDELHDILVDHETFLQRDQEPTIIPTA--------------------QVAYRGKPK 188
            A+  ++L   L  +E   ++ ++  I+                       QV  RG+  
Sbjct: 183 EAMTIEQLLGSLQAYEE--KKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGG 240

Query: 189 YHKNGSFHNH---INPSVNNISDSQGQ--------QKQVMCQFCDKSGHTAKEC------ 231
           Y     +  H    N    N S  +G+        +  V C  C K GH A EC      
Sbjct: 241 YGNGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAPSNK 300

Query: 232 ---YKIHGYPSKNGVRSAAHSARYTPHTDETD--WILDSGATHHL 271
               K +    K         A Y     E +  W LDSGA++H+
Sbjct: 301 KFEEKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHM 345


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,173,793
Number of Sequences: 26719
Number of extensions: 1075131
Number of successful extensions: 5821
Number of sequences better than 10.0: 273
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 3987
Number of HSP's gapped (non-prelim): 1009
length of query: 964
length of database: 11,318,596
effective HSP length: 109
effective length of query: 855
effective length of database: 8,406,225
effective search space: 7187322375
effective search space used: 7187322375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)