BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146568.9 + phase: 0 /pseudo
         (19 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g42190 UIP2 (gb|AAC63110.1)                                         31  0.11
At3g21830 kinetochore-like protein, Skp1p                              28  0.94
At1g75950 UIP1                                                         28  0.94
At3g21860 kinetochore-like protein, Skp1p                              28  1.2
At3g21850 kinetochore-like protein, Skp1p                              28  1.2
At3g21840 kinetochore-like protein, Skp1p                              27  1.6
At2g25700 putative kinetechore (Skp1p-like) protein                    26  3.6
At1g20140 kinetochore protein Skp1, putative                           26  3.6
At2g03170 putative kinetechore (Skp1p-like) protein                    26  4.7
At1g10230 putative kinetochore protein                                 26  4.7

>At5g42190 UIP2 (gb|AAC63110.1)
          Length = 171

 Score = 31.2 bits (69), Expect = 0.11
 Identities = 14/17 (82%), Positives = 15/17 (87%)

Query: 3  SSTRKITLKSSDGETFE 19
          S+ RKITLKSSDGE FE
Sbjct: 2  STVRKITLKSSDGENFE 18


>At3g21830 kinetochore-like protein, Skp1p
          Length = 152

 Score = 28.1 bits (61), Expect = 0.94
 Identities = 12/16 (75%), Positives = 15/16 (93%)

Query: 4  STRKITLKSSDGETFE 19
          ST+KI LKSS+G+TFE
Sbjct: 2  STKKIMLKSSEGKTFE 17


>At1g75950 UIP1
          Length = 160

 Score = 28.1 bits (61), Expect = 0.94
 Identities = 12/16 (75%), Positives = 14/16 (87%)

Query: 4  STRKITLKSSDGETFE 19
          S +KI LKSSDGE+FE
Sbjct: 2  SAKKIVLKSSDGESFE 17


>At3g21860 kinetochore-like protein, Skp1p
          Length = 152

 Score = 27.7 bits (60), Expect = 1.2
 Identities = 12/16 (75%), Positives = 14/16 (87%)

Query: 4  STRKITLKSSDGETFE 19
          ST+KI LKSSDG +FE
Sbjct: 2  STKKIILKSSDGHSFE 17


>At3g21850 kinetochore-like protein, Skp1p
          Length = 153

 Score = 27.7 bits (60), Expect = 1.2
 Identities = 12/16 (75%), Positives = 14/16 (87%)

Query: 4  STRKITLKSSDGETFE 19
          ST+KI LKSSDG +FE
Sbjct: 2  STKKIILKSSDGHSFE 17


>At3g21840 kinetochore-like protein, Skp1p
          Length = 125

 Score = 27.3 bits (59), Expect = 1.6
 Identities = 12/16 (75%), Positives = 14/16 (87%)

Query: 4  STRKITLKSSDGETFE 19
          ST+KI LKSSDG+ FE
Sbjct: 2  STKKIMLKSSDGKMFE 17


>At2g25700 putative kinetechore (Skp1p-like) protein
          Length = 163

 Score = 26.2 bits (56), Expect = 3.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 1  MSSSTRKITLKSSDGETFE 19
          M+ + + I LKSSDGE+FE
Sbjct: 1  MAETKKMIILKSSDGESFE 19


>At1g20140 kinetochore protein Skp1, putative
          Length = 163

 Score = 26.2 bits (56), Expect = 3.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 1  MSSSTRKITLKSSDGETFE 19
          M+ + + I LKSSDGE+FE
Sbjct: 1  MAETKKMIILKSSDGESFE 19


>At2g03170 putative kinetechore (Skp1p-like) protein
          Length = 149

 Score = 25.8 bits (55), Expect = 4.7
 Identities = 11/16 (68%), Positives = 13/16 (80%)

Query: 4  STRKITLKSSDGETFE 19
          S+ KI L SSDGE+FE
Sbjct: 2  SSNKIVLSSSDGESFE 17


>At1g10230 putative kinetochore protein
          Length = 183

 Score = 25.8 bits (55), Expect = 4.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 1  MSSSTRKITLKSSDGETFE 19
          ++ S+ KI L SSDGE+FE
Sbjct: 24 LTMSSNKILLTSSDGESFE 42


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.298    0.112    0.266 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 294,556
Number of Sequences: 26719
Number of extensions: 1931
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 10
length of query: 19
length of database: 11,318,596
effective HSP length: 0
effective length of query: 24
effective length of database: 11,318,596
effective search space: 271646304
effective search space used: 271646304
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 53 (25.0 bits)