BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146567.15 + phase: 0 /pseudo
(225 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g25010 unknown protein 94 4e-20
At1g17930 unknown protein 80 9e-16
At1g48120 serine/threonine phosphatase PP7, putative 77 1e-14
At1g32120 hypothetical protein 41 4e-04
At4g16050 hypothetical protein 38 0.004
At1g51545 unknown protein 38 0.004
At5g18510 putative protein 37 0.006
At1g50830 hypothetical protein 37 0.006
At1g50820 hypothetical protein 36 0.014
At1g50770 hypothetical protein 35 0.024
At1g50790 hypothetical protein 35 0.032
At1g50760 hypothetical protein 33 0.16
At5g15100 auxin transport protein - like 31 0.60
At1g50750 hypothetical protein 29 2.3
At4g23140 receptor-like protein kinase 5 (RLK5) 27 8.7
>At2g25010 unknown protein
Length = 509
Score = 94.4 bits (233), Expect = 4e-20
Identities = 63/204 (30%), Positives = 97/204 (46%), Gaps = 3/204 (1%)
Query: 11 GYENISHGFVCAMTGRWHEETNNFHLPIGEMTIRLDDVVCLLGIPITGRLLPDKELTCEE 70
G ++++ + A+ RW ETN FHLP+GEMTI LD+V +LG+ I G + ++ E
Sbjct: 67 GPMSLNNSLISALVERWRRETNTFHLPLGEMTITLDEVALVLGLEIDGDPIVGSKVGDEV 126
Query: 71 GLKIMETDLLFTAEAAGKELTR*GASHISFGALKTRYKELEKEEQAQVRLACIKALLLLL 130
+ + L AA KE+ S + LK + E ++ V +A LL L
Sbjct: 127 AMDMCGRLLGKLPSAANKEV---NCSRVKLNWLKRTFSECPEDASFDVVKCHTRAYLLYL 183
Query: 131 LG*TIFLGKNNKNMNLIWLLALQDMDELDSWSWGGMRLAFLYEPLSLTSDSSVASRGGYM 190
+G TIF + +++ +L +D D+ ++WG LA LY L S S ++ G +
Sbjct: 184 IGSTIFATTDGDKVSVKYLPLFEDFDQAGRYAWGAAALACLYRALGNASLKSQSNICGCL 243
Query: 191 TLFVVIFVFLLFYLLDRKCLYCFP 214
TL F L K CFP
Sbjct: 244 TLLQCWSYFHLDIGRPEKSEACFP 267
>At1g17930 unknown protein
Length = 478
Score = 80.1 bits (196), Expect = 9e-16
Identities = 50/182 (27%), Positives = 91/182 (49%), Gaps = 6/182 (3%)
Query: 11 GYENISHGFVCAMTGRWHEETNNFHLPIGEMTIRLDDVVCLLGIPITGRLLPDKELTCEE 70
G ++++ + A+ RW ETN FH P GEMTI LD+V +LG+ + G+ + + E+
Sbjct: 58 GSISLNNSLISALVERWRRETNTFHFPCGEMTITLDEVSLILGLAVDGKPVVGVKEKDED 117
Query: 71 GLKIMETDLLFTAEAAGKELTR*GASHISFGALKTRYKELEKEEQAQVRLACIKALLLLL 130
++ L + EL+ + ++ LK + E K + +A L+ +
Sbjct: 118 PSQVC---LRLLGKLPKGELS---GNRVTAKWLKESFAECPKGATMKEIEYHTRAYLIYI 171
Query: 131 LG*TIFLGKNNKNMNLIWLLALQDMDELDSWSWGGMRLAFLYEPLSLTSDSSVASRGGYM 190
+G TIF + +++ +L+ +D ++ ++WG LAFLY + S S + GG +
Sbjct: 172 VGSTIFATTDPSKISVDYLILFEDFEKAGEYAWGAAALAFLYRQIGNASQRSQSIIGGCL 231
Query: 191 TL 192
TL
Sbjct: 232 TL 233
>At1g48120 serine/threonine phosphatase PP7, putative
Length = 1338
Score = 76.6 bits (187), Expect = 1e-14
Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 19/196 (9%)
Query: 3 GLTTLLTSGYENISHGFVCAMTGRWHEETNNFHLPIGEMTIRLDDVVCLLGI-----PIT 57
GL + + + + + A+ RW ET+ FHLP GE+T+ L DV LLG+ +T
Sbjct: 68 GLYGVYKVAFIQLDYALITALVERWRPETHTFHLPAGEITVTLQDVNILLGLRVDGPAVT 127
Query: 58 GRLLPDKELTCEEGLKIMETDLLFTAEAAGKELTR*GASHISFGALKTRYKELEKEEQAQ 117
G + CE+ L K+L SH+S L+ ++ L + +
Sbjct: 128 GSTKYNWADLCED---------LLGHRPGPKDL---HGSHVSLAWLRENFRNLPADPD-E 174
Query: 118 VRLAC-IKALLLLLLG*TIFLGKNNKNMNLIWLLALQDMDELDSWSWGGMRLAFLYEPLS 176
V L C +A +L L+ ++ K+ ++ L +L L+D DE+ SWG LA LY L
Sbjct: 175 VTLKCHTRAFVLALMSGFLYGDKSKHDVALTFLPLLRDFDEVAKLSWGSATLALLYRELC 234
Query: 177 LTSDSSVASRGGYMTL 192
S +V++ G + L
Sbjct: 235 RASKRTVSTICGPLVL 250
>At1g32120 hypothetical protein
Length = 1206
Score = 41.2 bits (95), Expect = 4e-04
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 7 LLTSGYENISHG-FVCAMTGRWHEETNNFHLPIGEMTIRLDDVVCLLGIPITGR--LLPD 63
+L S Y+ H + A+ +W ETN F P GE T+ L+D++ L G+ +TG L P
Sbjct: 108 ILASRYQIKRHDDLIVALVEKWCIETNTFVFPWGEATLTLEDMIVLGGLSVTGNNALAPV 167
Query: 64 KELTCEEGLKIME 76
K +G+K +E
Sbjct: 168 K----RDGMKEVE 176
>At4g16050 hypothetical protein
Length = 900
Score = 38.1 bits (87), Expect = 0.004
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 20 VCAMTGRWHEETNNFHLPIGEMTIRLDDVVCLLGIPITG 58
+ ++ W ETN F P GE TI L+DV LLG I+G
Sbjct: 364 ILSLAQNWCPETNTFVFPWGEATITLEDVNVLLGFSISG 402
>At1g51545 unknown protein
Length = 629
Score = 38.1 bits (87), Expect = 0.004
Identities = 17/43 (39%), Positives = 25/43 (57%)
Query: 16 SHGFVCAMTGRWHEETNNFHLPIGEMTIRLDDVVCLLGIPITG 58
+ + A+ +W ET +F P GE TI L+DV+ LLG + G
Sbjct: 28 NQSLLLALVEKWCPETKSFLFPWGEATITLEDVLVLLGFSVQG 70
>At5g18510 putative protein
Length = 702
Score = 37.4 bits (85), Expect = 0.006
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 20 VCAMTGRWHEETNNFHLPIGEMTIRLDDVVCLLGIPITG 58
+ ++ +W ET +F P GE TI L+DV+ LLG + G
Sbjct: 98 ILSIAEKWCSETKSFIFPWGEATITLEDVMVLLGFSVLG 136
>At1g50830 hypothetical protein
Length = 768
Score = 37.4 bits (85), Expect = 0.006
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 20 VCAMTGRWHEETNNFHLPIGEMTIRLDDVVCLLGIPITG 58
+ +++ +W ET +F P GE TI L+DV+ LLG + G
Sbjct: 120 ILSVSEKWCPETKSFVFPWGEATITLEDVMVLLGFSVLG 158
>At1g50820 hypothetical protein
Length = 528
Score = 36.2 bits (82), Expect = 0.014
Identities = 21/56 (37%), Positives = 28/56 (49%), Gaps = 2/56 (3%)
Query: 20 VCAMTGRWHEETNNFHLPIGEMTIRLDDVVCLLGIPITGRLLPDKELTCEEGLKIM 75
V + +W +T F P GE TI L+DV+ LLG + G LP G +IM
Sbjct: 98 VLGLAEKWCPDTKTFIFPWGEATITLEDVMVLLGFSVLG--LPVFATVDSSGKEIM 151
>At1g50770 hypothetical protein
Length = 632
Score = 35.4 bits (80), Expect = 0.024
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 20 VCAMTGRWHEETNNFHLPIGEMTIRLDDVVCLLGIPITG 58
V + +W +T F P GE TI L+DV+ LLG + G
Sbjct: 101 VLGIAEKWCPDTKTFVFPWGETTITLEDVMLLLGFSVLG 139
>At1g50790 hypothetical protein
Length = 812
Score = 35.0 bits (79), Expect = 0.032
Identities = 19/53 (35%), Positives = 28/53 (51%), Gaps = 1/53 (1%)
Query: 7 LLTSGYENISH-GFVCAMTGRWHEETNNFHLPIGEMTIRLDDVVCLLGIPITG 58
+L S Y+ + V + +W +TN F GE TI L+DV+ LLG + G
Sbjct: 88 ILASTYKIFKNTDLVMGIAEKWCPDTNTFVFSWGEATITLEDVMVLLGFSVLG 140
>At1g50760 hypothetical protein
Length = 649
Score = 32.7 bits (73), Expect = 0.16
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 20 VCAMTGRWHEETNNFHLPIGEMTIRLDDVVCLLGIPITGRLLPDKELTCEEGLKIME 76
V + +W +T F GE TI L+DV+ L G + G P G KIME
Sbjct: 91 VLGVAEKWSPDTKTFVFSWGEATITLEDVMVLSGFSVLGS--PAFATLDSSGKKIME 145
>At5g15100 auxin transport protein - like
Length = 367
Score = 30.8 bits (68), Expect = 0.60
Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 25/187 (13%)
Query: 51 LLGIPITGRLLPDKELTCEEGLKIME-----TDLLFTAEA-AGKELTR*GASHISFGA-- 102
+LG+PI + D+ + E + +++ T LLF E A + L GAS G
Sbjct: 120 ILGMPILSAIYGDEAASILEQIVVLQSLIWYTILLFLFELNAARALPSSGASLEHTGNDQ 179
Query: 103 ----LKTRYKELEKEEQ-AQVRLACIKALLLLLLG*TIFLGKNNKNMNLI---------- 147
++ KE E EE+ A VR + + +LL + N LI
Sbjct: 180 EEANIEDEPKEEEDEEEVAIVRTRSVGTMKILLKAWRKLIINPNTYATLIGIIWATLHFR 239
Query: 148 --WLLALQDMDELDSWSWGGMRLAFLYEPLSLTSDSSVASRGGYMTLFVVIFVFLLFYLL 205
W L + S GG+ +A L + S SS+ + G M + ++ F+L L
Sbjct: 240 LGWNLPEMIDKSIHLLSDGGLGMAMFSLGLFMASQSSIIACGTKMAIITMLLKFVLGPAL 299
Query: 206 DRKCLYC 212
YC
Sbjct: 300 MIASAYC 306
>At1g50750 hypothetical protein
Length = 816
Score = 28.9 bits (63), Expect = 2.3
Identities = 12/39 (30%), Positives = 19/39 (47%)
Query: 20 VCAMTGRWHEETNNFHLPIGEMTIRLDDVVCLLGIPITG 58
+ + +W T F P GE + L+DV+ L G + G
Sbjct: 77 ILGIAEKWCPYTKTFVFPWGETAVTLEDVMVLSGFSVLG 115
>At4g23140 receptor-like protein kinase 5 (RLK5)
Length = 674
Score = 26.9 bits (58), Expect = 8.7
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 179 SDSSVASRGGYMTLFVVIFVFLLFYLLDRKCLYCFPACESKET 221
S SS+ + G T+ VV V L L YCF A + K+T
Sbjct: 276 SSSSLPGKSGNSTVLVVAVVVLAVLLFIALVGYCFLAKKKKKT 318
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.328 0.143 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,927,641
Number of Sequences: 26719
Number of extensions: 192856
Number of successful extensions: 509
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 15
length of query: 225
length of database: 11,318,596
effective HSP length: 96
effective length of query: 129
effective length of database: 8,753,572
effective search space: 1129210788
effective search space used: 1129210788
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146567.15