BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146567.10 + phase: 0 
         (393 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g60980 ras-GTPase-activating protein SH3-domain binding prote...   253  1e-67
At3g25150 RNA binding like protein                                    244  5e-65
At1g13730 unknown protein                                             226  1e-59
At2g03640 unknown protein                                             213  2e-55
At1g69250 RNA-binding protein like                                    195  4e-50
At5g48650 NTF2-containing RNA-binding protein-like                    156  2e-38
At5g43960 unknown protein                                             121  6e-28
At3g07240 putative RNA-binding protein                                104  1e-22
At3g07250 putative RNA-binding protein                                 97  2e-20
At3g55540 putative protein                                             81  1e-15
At1g27970 unknown protein                                              52  6e-07
At1g27310 similar to nuclear transport factor 2                        49  5e-06
At1g03457 ribonucleoprotein like                                       45  9e-05
At1g22760 putative polyA-binding protein, PAB3                         40  0.002
At4g03110 putative ribonucleoprotein                                   40  0.002
At1g72150 putative cytosolic factor protein                            40  0.003
At5g19960 glycine-rich RNA-binding protein - like                      39  0.004
At1g60000 unknown protein                                              39  0.005
At1g49490 hypothetical protein                                         38  0.008
At4g14300 ribonucleoprotein like protein                               38  0.011

>At5g60980 ras-GTPase-activating protein SH3-domain binding protein
           - like
          Length = 460

 Score =  253 bits (647), Expect = 1e-67
 Identities = 161/386 (41%), Positives = 222/386 (56%), Gaps = 37/386 (9%)

Query: 1   MAVPEAVQTPTPQMVGNAFVEQYYSILHRDPDQVHRFYHDSSVMSRPEEDGTMTTVTTTA 60
           MA  EA  +P  ++VG AFVEQYY ILH+ P  VHRFY DSS ++RP+  G +TTVTT  
Sbjct: 1   MAQQEASPSPGAEVVGRAFVEQYYHILHQSPGLVHRFYQDSSFLTRPDVTGAVTTVTTMQ 60

Query: 61  EIDKKIQSLEYTSFRVEVLSADAQPSYNNGVMVVVTGCLTGTDNIKRKFAQSFFLAPQDK 120
            I+ KI SL+Y  +  E+ +ADAQ S+  GV+V+VTG LTG DN+++KF+QSFFLAPQDK
Sbjct: 61  AINDKILSLKYEDYTAEIETADAQESHERGVIVLVTGRLTGNDNVRKKFSQSFFLAPQDK 120

Query: 121 GFYVLNDVFRYVDAYK-SIDIESVPANDADESAPSEAIITPEPEPV-HVPEVIPPTQTVI 178
           G++VLNDVFR+++  + +    SVP N        +A I PE   V H PEV P      
Sbjct: 121 GYFVLNDVFRFLEEKEVTAQARSVPINGTTRDV--QAPIEPERVVVSHEPEVEPE----- 173

Query: 179 PTAQTVIPPTQTVIADTETIISKEVSLPLENGKLSVTENVIPVNHVKESSHHVKEPEQPT 238
           P A          I + +     EV  P +  +  V  +V P+           EP    
Sbjct: 174 PVAS---------IEEEDLDNVAEVYDPSDKDE-GVVVDVEPI-----------EPPTQI 212

Query: 239 SIEKVASNTQEDTPKKSFASIVNALKDNSAP-FHLRASPAKPAVHPPRVHSVPAPEAPTP 297
           S  ++ S  Q D PK S+ASI+  +K + AP  H+  +  +PA    ++ + PA  A  P
Sbjct: 213 SHNEILSVPQGDAPKHSYASILKQMKSSPAPTTHVARNKPRPAPVNQKLTAPPAEPAARP 272

Query: 298 ----NMDIPLEKNNENAGRAHAIFVANLPMSATVEQLDRAFKKFGPIKRDGIQVRSNK-- 351
               + ++P   + +     H+I+V NLP  +T  QL+  FK FG IK +GIQVRSNK  
Sbjct: 273 EASAHENVPNSSHVDVEDDGHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQ 332

Query: 352 GSCFGFVEFESAASMQSALEVWSISI 377
           G CFGFVEFE+++  QSALE   ++I
Sbjct: 333 GFCFGFVEFETSSGKQSALEASPVTI 358


>At3g25150 RNA binding like protein
          Length = 488

 Score =  244 bits (624), Expect = 5e-65
 Identities = 148/394 (37%), Positives = 214/394 (53%), Gaps = 34/394 (8%)

Query: 1   MAVPEAVQTP----TPQMVGNAFVEQYYSILHRDPDQVHRFYHDSSVMSRPEEDGTMTTV 56
           MA+  A Q P    TP MVGNAFV QYY ILH+ P+ VHRFY + S + RPEE+G M+  
Sbjct: 1   MAMLGAQQVPAAACTPDMVGNAFVPQYYHILHQSPEHVHRFYQEISKLGRPEENGLMSIT 60

Query: 57  TTTAEIDKKIQSLEYTSFRVEVLSADAQPSYNNGVMVVVTGCLTGTDNIKRKFAQSFFLA 116
           +T   IDKKI +L Y     E+ + D Q S+  G +V+VTG LTG D+++R F+Q+FFLA
Sbjct: 61  STLQAIDKKIMALGYGVISAEIATVDTQESHGGGYIVLVTGYLTGKDSVRRTFSQTFFLA 120

Query: 117 PQDKGFYVLNDVFRYVDAYKSIDIESVPANDADESAPSEAIITPEPEPVHVPEVIPPTQT 176
           PQ+ G++VLND+FR++D    +    +P N+    AP         +     + IP    
Sbjct: 121 PQETGYFVLNDMFRFIDEGTVVHGNQIPVNNV--QAPVNTY-----QDTAAAKEIPDDFV 173

Query: 177 VIPTAQTVIPPTQTVIADTETIISKEVSLPLENGKLSVTENVIPVNHVKESSHHVKEPEQ 236
                Q      QT +        ++V  P E+ ++S  E  +    V E+         
Sbjct: 174 QEKYVQENHAVKQTEVLSKSINEPEKVFTPSEDEQVSAAEEALVTETVNEA--------- 224

Query: 237 PTSIEKVASNTQE--DTPKKSFASIVNALKDNSAPFHLRASPAK--------PAVHPPRV 286
           P  ++KV  +     + PK+S+ASIV  +K+N+AP     +P K         A+H P  
Sbjct: 225 PIEVQKVGESDSRTGEIPKRSYASIVKVMKENAAPMSASRTPTKVEPKKQEDQAIHIPL- 283

Query: 287 HSVPAPEAPTPNMDIPLEKNNENAGRA--HAIFVANLPMSATVEQLDRAFKKFGPIKRDG 344
              P  E      ++ + +NN+   RA   +I++  LP+ AT   L+  F+KFG I+ +G
Sbjct: 284 -PTPLSEKSDSGANVAVNENNQENERALGPSIYLKGLPLDATPALLENEFQKFGLIRTNG 342

Query: 345 IQVRSNKGSCFGFVEFESAASMQSALEVWSISIN 378
           IQVRS KG CFGFVEFESA+SMQSA+E   + +N
Sbjct: 343 IQVRSQKGFCFGFVEFESASSMQSAIEASPVMLN 376


>At1g13730 unknown protein
          Length = 428

 Score =  226 bits (577), Expect = 1e-59
 Identities = 144/374 (38%), Positives = 200/374 (52%), Gaps = 41/374 (10%)

Query: 1   MAVPEAVQTPTPQMVGNAFVEQYYSILHRDPDQVHRFYHDSSVMSRPEEDGTMTTVTTTA 60
           MA+        P  +GN+FVE+YY++L++ P QVH+FY D SV+ RP  DG M +V +  
Sbjct: 1   MALESNAPVVDPNTIGNSFVEKYYNLLYKSPSQVHQFYLDDSVLGRPGSDGEMVSVKSLK 60

Query: 61  EIDKKIQSLEYTSFRVEVLSADAQPSYNNGVMVVVTGCLTGTDNIKRKFAQSFFLAPQDK 120
            I+++I S +Y   ++++L+AD+Q SY NGV+ +VTG LT  +  + +F+QSFFL P + 
Sbjct: 61  AINEQIMSFDYEISKIQILTADSQASYMNGVVTLVTGLLTVKEGQRMRFSQSFFLVPLNG 120

Query: 121 GFYVLNDVFRYVDAYKSIDIESVPANDADESAPSEAIITPEPEPVHVPEVIPPTQTVIPT 180
            ++VLNDVFRYV               ADE    EA    E E V +P+V+ PT+ V   
Sbjct: 121 SYFVLNDVFRYV---------------ADEIVEPEA-NKKEVEEV-IPQVVQPTEQVDEV 163

Query: 181 AQTVIPPTQTVIADTETIISKEVSLPLENGKLSVTENVIPVNHVKESSHHVKEPEQPTSI 240
           A+ V  PTQ   A                     TEN +       ++ H K  E     
Sbjct: 164 AEPVTIPTQQPEAK------------------QTTENTVKKPERAVANGHPKTQEDNVVN 205

Query: 241 EKVASNTQEDTPKKSFASIVNALKDNSAPFHLRASPAKPAVHP-PRVHSVPAPEAPTPNM 299
           +K   +   D PKKSFA IV  L  N A F+ +ASPAKP   P  +  +    +AP P  
Sbjct: 206 DK---SNGVDAPKKSFAHIVQDLAQNGATFNAKASPAKPKSKPVTKPSAARESKAPAPVS 262

Query: 300 DIPLEKNNENAGRAHAIFVANLPMSATVEQLDRAFKKFGPIKRDGIQVRSN--KGSCFGF 357
           +       +     + IFVANL M AT EQL+  FK FG I +DGIQVRS   KG+CFGF
Sbjct: 263 EHSSAATIDQQAEGYTIFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGF 322

Query: 358 VEFESAASMQSALE 371
           V F SA +++  L+
Sbjct: 323 VTFASAEAVKLVLQ 336


>At2g03640 unknown protein
          Length = 422

 Score =  213 bits (541), Expect = 2e-55
 Identities = 136/365 (37%), Positives = 202/365 (55%), Gaps = 47/365 (12%)

Query: 12  PQMVGNAFVEQYYSILHRDPDQVHRFYHDSSVMSRPEEDGTMTTVTTTAEIDKKIQSLEY 71
           PQ VGN FV++YY+ L+    +VH+FY + S++SRP  DG + T+ +   I+ +I S++Y
Sbjct: 12  PQFVGNGFVQEYYNHLYDSTSEVHKFYLEDSMISRPGLDGEIVTIKSLKGINDQIMSIDY 71

Query: 72  TSFRVEVLSADAQPSYNNGVMVVVTGCLTGTDNIKRKFAQSFFLAPQDKGFYVLNDVFRY 131
            S R+E+L+AD+Q +  NGV+ +VTG + G D  +RKF+QSFFL  ++  ++VLND FRY
Sbjct: 72  KSSRIEILTADSQSTLKNGVVTLVTGLVIGNDGGRRKFSQSFFLVSRNGSYFVLNDTFRY 131

Query: 132 V-DAYKSIDIESVPANDADESAPSEAIITPEPEPVHVPEVIPPTQTVIPTAQTVIPPTQT 190
           V D +    +E     + +ES  + AI  P  E V                + VI PT  
Sbjct: 132 VSDEF----VEPEATKEVEESQSTNAITEPANESV----------------EAVIVPT-- 169

Query: 191 VIADTETIISKEVSLPLENGKLSVTENVIPVNHVKESSHHVKEPEQPTSIEKVASNTQED 250
              + +T ++K  S  + NG   V E  +    V E+S   K  E         +  QE+
Sbjct: 170 ---EAKTTVTKPAS-AIPNGHAKVPEEKV----VNENSSLPKAAE---------AKLQEE 212

Query: 251 TPKKSFASIVNALKDNSAPFHLRASPAKPAVHPPRVHSVPAPE--APTPNMDIPLEKNNE 308
            PKKSFA IV +L  ++    ++ASP K     P    V APE  AP+P       ++ +
Sbjct: 213 VPKKSFALIVQSLAQSAGTLQVKASPVK---RKPVEKPVAAPERKAPSPIRKQASAESIK 269

Query: 309 NAGRAHAIFVANLPMSATVEQLDRAFKKFGPIKRDGIQVRS--NKGSCFGFVEFESAASM 366
              +  +IFVANLPM AT+EQL   FK FG I++DGIQVRS   K +C GFV FE+  ++
Sbjct: 270 PQAQGSSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEAV 329

Query: 367 QSALE 371
           ++  +
Sbjct: 330 KNVFQ 334


>At1g69250 RNA-binding protein like
          Length = 427

 Score =  195 bits (495), Expect = 4e-50
 Identities = 132/375 (35%), Positives = 203/375 (53%), Gaps = 54/375 (14%)

Query: 10  PTPQMVGNAFVEQYYSILHRDPDQVHRFYHDSSVMSRPEEDGTMTTVTTTAEIDKKIQSL 69
           P+ Q +   FV QYY +L + P +  R Y D+SV+SRP+  GTM + T+   I+K I S 
Sbjct: 8   PSAQDIAAEFVRQYYHVLGQLPHEARRLYVDASVVSRPDVTGTMMSFTSVEAINKHILSC 67

Query: 70  EYTSFRVEVLSADAQPSYNNGVMVVVTGCLTGTDNIKRKFAQSFFLAPQDKGFYVLNDVF 129
           ++ + + EVLS D+Q S  +G+ ++V G +TG DN +RKF+Q F+LA Q+    VLND+ 
Sbjct: 68  DFENTKFEVLSVDSQNSLEDGIFIMVIGFMTGKDNQRRKFSQMFYLARQNT-LVVLNDML 126

Query: 130 RYVDAYKSIDIESVPANDADESAPSEAIITPEPEPVHVPEVIPPTQTVIPTAQTVIPPTQ 189
           RYV              D ++S+ +E    P      V E++ P   +    +T +   Q
Sbjct: 127 RYV--------------DQEDSSTTETPCEP------VTEIVRPADGLKKAEKTEL--KQ 164

Query: 190 TVIADTETIISKEV---SLPLENGKLSVTENVIPVNHVKESSHHVKEPEQPTSIEKVASN 246
             +A  E  ++  V   + PL+NGK+  +E  +        +  V EP+         + 
Sbjct: 165 KNVASVEKSVNAAVEKNAAPLDNGKMKQSEKAV-------ITQKVTEPD---------AA 208

Query: 247 TQEDTPKKSFASIVNALKDNSAPFHLRASPAKPAVHPPRVHSVP----APEAPTPNMDIP 302
            Q D  K+SFA IV ++  N+APF ++ SP +  V  P+    P    AP+ P   +   
Sbjct: 209 PQPDGAKRSFADIVGSMAKNAAPFQVK-SPVQAPVQKPKYVGQPRAAAAPQKPA-YVSKS 266

Query: 303 LEKNNENAGR--AHAIFVANLPMSATVEQLDRAFKKFGPIKRDGIQVRSNKGS----CFG 356
           ++KN++        +IFVANLP++A   QL   FK FGPIK +GIQVRS++G+    CFG
Sbjct: 267 IKKNDQKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFG 326

Query: 357 FVEFESAASMQSALE 371
           F+ FE+ AS+QS L+
Sbjct: 327 FISFETVASVQSVLQ 341


>At5g48650 NTF2-containing RNA-binding protein-like
          Length = 458

 Score =  156 bits (395), Expect = 2e-38
 Identities = 121/404 (29%), Positives = 190/404 (46%), Gaps = 70/404 (17%)

Query: 12  PQMVGNAFVEQYYSILHRDPDQVHRFYHDSSVMSRPEEDGTMTTVTTTAEIDKKIQSLEY 71
           P  VG+AFV QYY I    P+ + RFY + S + R  +DG M   +T   I ++++ L Y
Sbjct: 13  PLTVGSAFVNQYYYIFCNMPEHLPRFYQEISRVGRVGQDGVMRDFSTFQGISEELKRLTY 72

Query: 72  TSFR-VEVLSADAQPSYNNGVMVVVTGCLTGTDNIKRKFAQSFFLAPQDKGFYVLNDVFR 130
                 E+ S D Q S+N G ++ VTG  T  +  +RKF Q+FFLAPQ+KGF+VLND+ R
Sbjct: 73  GDCNSAEITSYDTQESHNGGFLLFVTGYFTLNERSRRKFTQTFFLAPQEKGFFVLNDILR 132

Query: 131 YVDAYKSIDIESVPANDADESAPSEAIITPEPEPVHVPEVIPPTQTVIPTAQTVIPPTQT 190
           +V+            +DA ++ P               EV+    +  PT    +  ++ 
Sbjct: 133 FVN------------DDAKDNVPETI----------DGEVVSGINSTTPTIINGMKGSEQ 170

Query: 191 VIADTETIISKEVSLPLENGKLSVTENVIPVNHVKESSHHVKEPEQPTSIEKVASNTQE- 249
               +   + KEVS PL+N   +  +NV+    V E ++ V   E   + ++VA ++Q+ 
Sbjct: 171 AACVSVNPVCKEVSKPLDNE--NAKDNVL----VPEIANEVARTE--ITCKEVADDSQKN 222

Query: 250 --------DTPKKSFASIVNALKDN-SAPFHLRASPAKPAVHPPRVHSVPAP-------- 292
                   D PKKS+AS++   KD    P     SP K  +   + H  P+         
Sbjct: 223 YDPDDGLADAPKKSYASVLKVTKDKFGVPAVSLPSPKK--IPKDQEHQAPSDPSTGQILK 280

Query: 293 --------------EAPTPNMDIPLEKNNEN---AGRAHAIFVANLPMSATVEQLDRAFK 335
                         E+ T +  +   +N  N        +I+V +LP +A ++ L+  FK
Sbjct: 281 DQGQQASSDPSQVIESDTVSESVDASENGHNQEAVAEGTSIYVRHLPFNANIDMLEAEFK 340

Query: 336 KFGPIKRDGIQVRSNK--GSCFGFVEFESAASMQSALEVWSISI 377
           +FG I   GIQV + +  G  +GFVEFE A +   A+E   + I
Sbjct: 341 QFGAITNGGIQVINQRGLGYPYGFVEFEEADAAHRAIEASPVKI 384


>At5g43960 unknown protein
          Length = 450

 Score =  121 bits (304), Expect = 6e-28
 Identities = 107/400 (26%), Positives = 186/400 (45%), Gaps = 59/400 (14%)

Query: 6   AVQTPTPQMVGNAFVEQYYSILHRDPDQVHRFYHDSSVMSRPEEDGTMTTVTTTAEIDKK 65
           A   P    VG+ FV QYY +L + PD +H+FY + S   R + D T  T  +   I   
Sbjct: 2   ATPYPGATQVGSYFVGQYYQVLQQQPDLIHQFYSEPSRAIRIDGDST-ETANSLLHIHNM 60

Query: 66  IQSLEYTSFRVEVLSADAQPSYNNGVMVVVTGCL-TGTDNIKRKFAQSFFLAPQDKGFYV 124
           + SL +T+  +EV + ++  S+  GV+VVV+G + T   + +R F Q+FFLAPQ+KG++V
Sbjct: 61  VMSLNFTA--IEVKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYFV 118

Query: 125 LNDVFRYVDAYKSIDIESVPANDADESAPSEAIITPEPEPVHVPEVIPPTQTVIPTAQTV 184
           L+DVF +VD                   PS        E  H  ++ PPT+   P     
Sbjct: 119 LSDVFLFVD-----------EGTVYYHQPSYL-----SEIKHEAQLNPPTRHPDPQVSDY 162

Query: 185 IPPTQTVIADTETIISKEVSLPLENGKLSVTENVIPVNHVK-ESSHHVKE-PEQPTSIEK 242
           +   +     ++ + + ++   L + K S+ E+     H   E    ++E P +  +++ 
Sbjct: 163 VLEEEA----SDYVNAVQIKDDLVD-KYSLQEDQHQPQHEDYEDEVAIEETPREEVAVDV 217

Query: 243 V----ASNTQE---DTPKKSFASIVNALKDNSAPFHLRASPAKPAVHPPRVHSVPAP-EA 294
           V    A+  +E   +  K S+ASI+   K+ +A   + A+          ++    P   
Sbjct: 218 VHEHRAAPVEEPVGEKSKMSYASILKVAKE-AATVPVAATQPSYNKSSQDINEWDQPMRT 276

Query: 295 PTPNMDIPLEKNNENAGRAH--------------------AIFVANLPMSATVEQLDRAF 334
           P+P +  PL    ++    +                    +++V NLP   +  +++  F
Sbjct: 277 PSPQLAAPLAPIQQSNSSTYVSDYGAEAEDGSGFEDFEFKSVYVRNLPSDISASEIEEEF 336

Query: 335 KKFGPIKRDGIQVRSNK---GSCFGFVEFESAASMQSALE 371
           K FG IK DG+ +R+ K   G C+ FVEFE   S+++A++
Sbjct: 337 KNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 376


>At3g07240 putative RNA-binding protein
          Length = 369

 Score =  104 bits (259), Expect = 1e-22
 Identities = 107/399 (26%), Positives = 172/399 (42%), Gaps = 90/399 (22%)

Query: 2   AVPEAVQTPTPQ-MVGNAFVEQYYSILHRDPDQVHRFYHDSSVMSRPEEDGTMTTVTTTA 60
           A P A    T Q ++G+ F E YY+ L   P+ +  +Y D S ++RP  DGTM + +T  
Sbjct: 5   ARPSAKAVYTIQTIIGDGFAEHYYNNLQNSPEILPGYYKDVSKITRPGLDGTMRS-STLP 63

Query: 61  EIDKKIQSLEYTSF-RVEVLSADAQPSYNNGVMVVVTGCLTGTDNIKRKFAQSFFLAPQD 119
           +I + +  L    F  VEV S  +Q S++ G+ V V G  T  +   R F Q+F  APQ+
Sbjct: 64  DIIEDLDMLSPGGFDSVEVTSVMSQDSHDKGIRVAVDGYFTFNERPARNFTQNFTFAPQE 123

Query: 120 KGFYVLNDVFRYVDAYKSIDIESVPANDADESAPSEAIITPEPEPVHVPEVIPPTQTVIP 179
           KG +V  D+F++V                                             IP
Sbjct: 124 KGLFVSTDMFKFVG--------------------------------------------IP 139

Query: 180 TAQTVIPPTQTVIADTETIISKEVSLPLENGKLSVTENV-----------IPVNHVKESS 228
            A   IPP     A+   I  K  +LPL N  +++ EN            + V + +  S
Sbjct: 140 EANATIPP-----ANNAAICVK--NLPL-NATIALVENAFKQFGEIRRGGVEVRNKRSFS 191

Query: 229 HHVKEPEQPTSIEK-----------VASNTQEDTPKKSFASIVNALKDNSAPFHLRASPA 277
           +   E ++  + ++           V  N  + +P      + +   +   P ++R    
Sbjct: 192 YGFVEFKEENAAQRAIKNCLIGFDNVGMNLMQASPVT--IDLRSVYVEKKRPDYIRYWDT 249

Query: 278 KPAVHPPRVHSVPAPEAPTPNMDIPLEKNNENAGRAHAIFVA----NLPMSATVEQLDRA 333
            P+  P  ++     E  +   D   +  NEN     A++ A    NLP + T + ++ A
Sbjct: 250 -PSTGPGIIY---RSEGMSVTKDYGNKGGNENNQEPRALYAAVHVKNLPPNVTTDWVENA 305

Query: 334 FKKFGPIKRDGIQVRSNK--GSCFGFVEFESAASMQSAL 370
           FK+FGPIKR G+QV SN+  G+ FG V+F  AA+ + A+
Sbjct: 306 FKQFGPIKRGGVQV-SNRGVGNWFGNVKFVHAAAAERAV 343



 Score = 58.2 bits (139), Expect = 8e-09
 Identities = 30/77 (38%), Positives = 46/77 (58%), Gaps = 7/77 (9%)

Query: 295 PTPNMDIPLEKNNENAGRAHAIFVANLPMSATVEQLDRAFKKFGPIKRDGIQVRSNKGSC 354
           P  N  IP   N        AI V NLP++AT+  ++ AFK+FG I+R G++VR+ +   
Sbjct: 139 PEANATIPPANNA-------AICVKNLPLNATIALVENAFKQFGEIRRGGVEVRNKRSFS 191

Query: 355 FGFVEFESAASMQSALE 371
           +GFVEF+   + Q A++
Sbjct: 192 YGFVEFKEENAAQRAIK 208


>At3g07250 putative RNA-binding protein
          Length = 946

 Score = 96.7 bits (239), Expect = 2e-20
 Identities = 101/385 (26%), Positives = 155/385 (40%), Gaps = 78/385 (20%)

Query: 15  VGNAFVEQYYSILHRDPDQVHRFYHDSSVMSRPEEDGTMTTVTTTAEIDKKIQSLEYTSF 74
           VG+ F  QYY+ L   P+ +++ Y D S +SRP  DGTM   T    + K ++     SF
Sbjct: 281 VGDEFARQYYNTLQNAPENLYKLYKDKSTISRPGLDGTMRVFT----LSKDLKWRSPGSF 336

Query: 75  -RVEVLSADAQPSYNNGVMVVVTGCLTGTDNIKRKFAQSFFLAPQDKGFYVLNDVFRYVD 133
             V++ S  +Q S   G++VVV G LT  +   R F Q FFL PQ+KG+ V  D+     
Sbjct: 337 DSVKITSVTSQDSLKQGILVVVYGYLTFNERPARHFTQVFFLVPQEKGYIVCTDM----- 391

Query: 134 AYKSIDIESVPANDADESAPSEAIITPEPEPVHVPEVIPPTQTVIPTAQTVIPPTQTVIA 193
            ++ +DI                                      P A   IPP      
Sbjct: 392 -FRFVDI--------------------------------------PEANAAIPPAND--- 409

Query: 194 DTETIISKEVSLPLENGKLSVTENVIPVNH-----VKESSHHVKE-PEQPTSIEKVASNT 247
                   +      N   SV E  +P        V E +H     P+   + E  A   
Sbjct: 410 ------GSKCLRSWFNANGSVIEEKVPETEGAALRVSEPNHGFDNVPKLSCASEGAAICA 463

Query: 248 QEDTPKKSFASIVNALKD----NSAPFHLRASPAKPAVHPPRVHSVPAPEAPTPNM--DI 301
           ++     + A + NA K           +R + A P         V    A   N+  D 
Sbjct: 464 KKLPLDATIAFVENAFKQFGEIRRGGVEVRINWASPISIDGYRTYVEKKYAYNKNIKADA 523

Query: 302 PLEKNNENAGRAHAIF------VANLPMSATVEQLDRAFKKFGPIKRDGIQV--RSNKGS 353
             +  N N+  + AI       V +LP +ATV  ++  FK+FGPIK+  I+V   +N   
Sbjct: 524 GADTGNGNSQDSQAITEDAHIRVKDLPPNATVALVESVFKQFGPIKKGRIRVINPANSNY 583

Query: 354 CFGFVEFESAASMQSALEVWSISIN 378
            + FVEFE A + + A++   ++++
Sbjct: 584 WYAFVEFEEADAAKRAIQASPLNVD 608



 Score = 37.4 bits (85), Expect = 0.014
 Identities = 23/69 (33%), Positives = 36/69 (51%), Gaps = 6/69 (8%)

Query: 315 AIFVANLPMSATVEQLDRAFKKFGPIKRDGIQVRSNKGSCFGFVEFESA-----ASMQSA 369
           ++F+  LP+  T   ++ A KKFGPI    I ++S     F FV+FE A     A M S 
Sbjct: 738 SVFLKRLPLDVTFALIEDALKKFGPINAISI-IKSGPLYKFAFVDFEKADVANRAIMASP 796

Query: 370 LEVWSISIN 378
           + +   ++N
Sbjct: 797 VRICEKNVN 805


>At3g55540 putative protein
          Length = 334

 Score = 80.9 bits (198), Expect = 1e-15
 Identities = 51/140 (36%), Positives = 81/140 (57%), Gaps = 8/140 (5%)

Query: 11  TPQMVGNAFVEQYYSILHRDPDQVHR-FYHDSSVMSRPEEDGTMTTVTTTAEIDKKIQSL 69
           T + + N F++ Y+  L   P+ V   +Y D SVM+RP  DGTM + T+   I ++I S 
Sbjct: 28  TSEALANCFLQSYFLNLGVYPEVVQMMWYADDSVMTRPGPDGTMMSFTSPEAIQEQIVSC 87

Query: 70  EYTSFRVEVLSADAQ---PSYNNGVMVVVTGCLTGTD-NIKRKFAQSFFLA-PQDKGFYV 124
           +Y     +V+S  AQ    S  +G  ++VTG LT  D  ++R+F QS +LA  QD+ + +
Sbjct: 88  DYEGASFDVMSFAAQSCNTSSEDGAFIMVTGFLTCKDKQVRRRFVQSLYLARRQDRSYAI 147

Query: 125 LNDVFRYVDAYKSIDIESVP 144
           +ND  RY+D+  +  + SVP
Sbjct: 148 VNDFLRYIDSIPA--LPSVP 165



 Score = 55.1 bits (131), Expect = 7e-08
 Identities = 44/149 (29%), Positives = 72/149 (47%), Gaps = 9/149 (6%)

Query: 12  PQMVGNAFVEQYYSILHRDPDQVHRFYHDSSVMSRPEEDG--TMTTVTTTAEIDKKIQSL 69
           P+  G  FV+ YY +  R+  ++   Y + S+MSRP      TM  +     I+K++ + 
Sbjct: 165 PESAG--FVKVYYELPMRE--ELGLMYVNESIMSRPTSTSGRTMVEMPGLDAINKRVSNE 220

Query: 70  EYTSFRVEVLSADAQ--PSYNNGVMVVVTGCLTGTDNIKRKFAQSFFLAPQDKGFYVL-N 126
              +    + S D Q   S+ + + ++V G +T  D  +RKF Q F++     G YV+ N
Sbjct: 221 HKRASNFILNSVDYQISRSFKDRMFIMVCGFVTLDDKTERKFLQFFYVTRCHNGSYVIYN 280

Query: 127 DVFRYVDAYKSIDIESVPANDADESAPSE 155
           D+ RYVD      +ES   + A  S   E
Sbjct: 281 DILRYVDVTPRDTLESSSQSAAKPSTDVE 309


>At1g27970 unknown protein
          Length = 126

 Score = 52.0 bits (123), Expect = 6e-07
 Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 8/122 (6%)

Query: 12  PQMVGNAFVEQYYSILHRDPDQVHRFYHDSSVMSRPEEDGTMTTVTTTAEIDKKIQSLEY 71
           P  V  AFVE YYS    +   +   Y ++S+++   +      +     I  K+ SL +
Sbjct: 6   PDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQ-----KIQGVQSIVAKLTSLPF 60

Query: 72  TSFRVEVLSADAQPS-YNNGVMVVVTGCL-TGTDNIKRKFAQSFFLAPQDKG-FYVLNDV 128
              +  + + D QPS   +G++V V+G L    +    KF+Q F L P  +G FYV ND+
Sbjct: 61  QQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDI 120

Query: 129 FR 130
           FR
Sbjct: 121 FR 122


>At1g27310 similar to nuclear transport factor 2
          Length = 122

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 7/121 (5%)

Query: 12  PQMVGNAFVEQYYSILHRDPDQVHRFYHDSSVMSRPEEDGTMTTVTTTAEIDKKIQSLEY 71
           P  V  AFVE YYS    +   +   Y + S+++   +      +  +  I  K+  L +
Sbjct: 3   PDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQK-----IQGSQNIVAKLTGLPF 57

Query: 72  TSFRVEVLSADAQPSYN-NGVMVVVTGCLT-GTDNIKRKFAQSFFLAPQDKGFYVLNDVF 129
              +  + + D QPS    G++V V+G L    +    KF+Q F L      +YV ND+F
Sbjct: 58  QQCKHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLISNQGNYYVFNDIF 117

Query: 130 R 130
           R
Sbjct: 118 R 118


>At1g03457 ribonucleoprotein like
          Length = 429

 Score = 44.7 bits (104), Expect = 9e-05
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 8/110 (7%)

Query: 283 PPRVH-SVPAPEAPTPNMDIPLEKNNENAGRAHAIFVANLPMSATVEQLDRAFKKFGPIK 341
           PPR+  +  +P        IP     E    A+ +F+ N+P     ++L   F+ FG + 
Sbjct: 299 PPRLPLTTVSPGISNNGTSIPSSLQTEGPAGAN-LFIYNIPREFEDQELAATFQPFGKVL 357

Query: 342 RDGIQVRSNKG--SCFGFVEFESAASMQSALEVWSISINSCYQQGCKLNV 389
              + V    G   CFGF+ ++S A+ Q+A+     ++N C   G KL V
Sbjct: 358 SAKVFVDKATGISKCFGFISYDSQAAAQNAIN----TMNGCQLSGKKLKV 403


>At1g22760 putative polyA-binding protein, PAB3
          Length = 660

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 22/58 (37%), Positives = 32/58 (54%), Gaps = 3/58 (5%)

Query: 316 IFVANLPMSATVEQLDRAFKKFGPIKRDGIQVRSNKGS--CFGFVEFESAASMQSALE 371
           ++V NLP     ++L + F KFG I    + +R   G+  CFGFV FE   +  SA+E
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVIS-SAVVMRDQSGNSRCFGFVNFECTEAAASAVE 287



 Score = 31.6 bits (70), Expect = 0.79
 Identities = 24/83 (28%), Positives = 38/83 (44%), Gaps = 7/83 (8%)

Query: 296 TPNMDIPLE---KNNENAGRAHA---IFVANLPMSATVEQLDRAFKKFGPIKRDGIQVR- 348
           TP  D P+     N + + R      IF+ NL  S   + L   F  FG I    + +  
Sbjct: 112 TPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV 171

Query: 349 SNKGSCFGFVEFESAASMQSALE 371
           + +   +GFV+FE   S Q+A++
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAID 194


>At4g03110 putative ribonucleoprotein
          Length = 441

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 29/106 (27%), Positives = 51/106 (47%), Gaps = 11/106 (10%)

Query: 291 APEAPTPNMDIPLEKNNENAGRAHA-----IFVANLPMSATVEQLDRAFKKFGPIKRDGI 345
           +P + +P M  PL     +  +        +F+ N+P     ++L  AF+ FG +    +
Sbjct: 321 SPGSISPGMSTPLGIGLSSVVQTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKV 380

Query: 346 QVRSNKG--SCFGFVEFESAASMQSALEVWSISINSCYQQGCKLNV 389
            V    G   CFGFV ++S A+ Q+A+++    +N  +  G KL V
Sbjct: 381 FVDKATGVSKCFGFVSYDSQAAAQNAIDM----MNGRHLGGKKLKV 422



 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 9/63 (14%)

Query: 314 HAIFVANLPMSATVEQLDRAFKKFGPIKRDGIQV-----RSNKGSCFGFVEFESAASMQS 368
           H +FV  LP + +  ++   F K+G IK   +Q+     +++KG    F+++E+     S
Sbjct: 106 HKLFVGMLPKNVSEAEVQSLFSKYGTIK--DLQILRGAQQTSKGC--AFLKYETKEQAVS 161

Query: 369 ALE 371
           A+E
Sbjct: 162 AME 164


>At1g72150 putative cytosolic factor protein
          Length = 573

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 49/207 (23%), Positives = 72/207 (34%), Gaps = 36/207 (17%)

Query: 141 ESVPANDADESAPSEAIITPEPEPVHVPEVIPPTQTVIPTAQTVIPPTQTVIADTETIIS 200
           E V A  +DE A  E  +TPE E    P         +   +TV+   + V+   E +  
Sbjct: 38  EEVAAPVSDEKAVPEKEVTPEKE---APAAEAEKSVSVKEEETVVVAEKVVVLTAEEVQK 94

Query: 201 K--EVSLPLENGKLSVTENVIPVNHVKESSHHVKEPEQPTSIEKVASNTQEDTPKKSFAS 258
           K  E    L    L+  E   PV  VKE     K+ E+ T  E+     +E+T  +    
Sbjct: 95  KALEEFKELVREALNKREFTAPVTPVKEEKTEEKKTEEETKEEEKTEEKKEETTTE---- 150

Query: 259 IVNALKDNSAPFHLRASPAKPAVHPPRVHSVPAPEAPTPNMDIPLEKNNENAGRAHAIFV 318
                        ++    KPA        VPA E    +   P+E  +E      A   
Sbjct: 151 -------------VKVEEEKPA--------VPAAEEEKSSEAAPVETKSEEKPEEKAEVT 189

Query: 319 ANLPMSA------TVEQLDRAFKKFGP 339
                SA      TVE ++ +     P
Sbjct: 190 TEKASSAEEDGTKTVEAIEESIVSVSP 216


>At5g19960 glycine-rich RNA-binding protein - like
          Length = 337

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 24/86 (27%), Positives = 41/86 (46%), Gaps = 9/86 (10%)

Query: 314 HAIFVANLPMSATVEQLDRAFKKFGPIKRDGI-QVRSNKGSCFGFVEFESAASMQSALEV 372
           ++++V  LP   T E + R F  +G +    I   RS +G C+GFV F +  S   A+E 
Sbjct: 7   NSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIED 66

Query: 373 W--------SISINSCYQQGCKLNVG 390
                    ++ +N    +G ++N G
Sbjct: 67  MDGKSIGGRAVRVNDVTTRGGRMNPG 92


>At1g60000 unknown protein
          Length = 258

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 29/89 (32%), Positives = 42/89 (46%), Gaps = 8/89 (8%)

Query: 285 RVHSVPAPEAPTPNMDIPLEKNNENAGRAHAIFVANLPMSATVEQLDRAFKKFGPIKRDG 344
           R   V   + P PN + PL    E     H +FV NL  + T E L  AF++ G +    
Sbjct: 154 RALKVNFADKPKPNKE-PLYPETE-----HKLFVGNLSWTVTSESLAGAFRECGDVVGAR 207

Query: 345 IQVRSNKGSC--FGFVEFESAASMQSALE 371
           +    + G    +GFV + S A M++ALE
Sbjct: 208 VVFDGDTGRSRGYGFVCYSSKAEMETALE 236


>At1g49490 hypothetical protein
          Length = 847

 Score = 38.1 bits (87), Expect = 0.008
 Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 16/150 (10%)

Query: 159 TPEPEPVHVPEVIP-----PTQTVIPTAQTVIPPTQTVIADTETIISK-EVSLPLENGKL 212
           T  P P H     P     PTQ   P+++T   PT +  +D   I+S  +   P+++   
Sbjct: 636 TFSPPPTHNTNQPPMGAPTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTP 695

Query: 213 SVTENVIPVNHVKES--SHHVKEPEQPTSIEKVASNTQEDTPKKSFASIVNALKDNSAPF 270
           S     +P     ES  + ++   + PT ++  A  T  +T +    S  +    + AP 
Sbjct: 696 SSEPTQVPTPSSSESYQAPNLSPVQAPTPVQ--APTTSSETSQVPTPSSESNQSPSQAP- 752

Query: 271 HLRASPAKPAVHPPRVHSVPAPEAPTPNMD 300
               +P    VH P  +S P  ++PTP+ +
Sbjct: 753 ----TPILEPVHAPTPNSKPV-QSPTPSSE 777



 Score = 30.8 bits (68), Expect = 1.3
 Identities = 25/90 (27%), Positives = 36/90 (39%), Gaps = 10/90 (11%)

Query: 154 SEAIITPEPEPVHVPEVIPPTQTVIPTAQTVIPPTQTVIADTE--TIISKEVSLPLENGK 211
           SE+   P   PV  P  +    T   T+Q   P +++  + ++  T I + V  P  N K
Sbjct: 708 SESYQAPNLSPVQAPTPVQAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSK 767

Query: 212 LSVTENVIPVNHVKESSHHVKEPEQPTSIE 241
                   PV     SS  V  PEQ   +E
Sbjct: 768 --------PVQSPTPSSEPVSSPEQSEEVE 789



 Score = 29.6 bits (65), Expect = 3.0
 Identities = 33/108 (30%), Positives = 47/108 (42%), Gaps = 26/108 (24%)

Query: 144 PANDADESAPSEAIITPEPEPVHVPEV-IPPTQTVIPTAQTVIPPTQTVIADTETIISKE 202
           P++++++S PS+A  TP  EPVH P     P Q+  P+++ V  P Q          S+E
Sbjct: 740 PSSESNQS-PSQAP-TPILEPVHAPTPNSKPVQSPTPSSEPVSSPEQ----------SEE 787

Query: 203 VSLPLENGKLSVTENVIPVNHVKESSHHVKEPEQPTSIEKVASNTQED 250
           V  P             PVN    SS     P   TSI    +N  +D
Sbjct: 788 VEAP----------EPTPVN---PSSVPSSSPSTDTSIPPPENNDDDD 822



 Score = 28.1 bits (61), Expect = 8.7
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 234 PEQPTSIEKVASNTQEDTPKKSFASIVNALKDNSAPFHLRASPAKPAVHP-PRVHSVPAP 292
           P  P + E   S  +   PK S         D+S P     +P +P+  P P  H  P P
Sbjct: 396 PNPPRTSEPKPSKPEPVMPKPS---------DSSKP-ETPKTPEQPSPKPQPPKHESPKP 445

Query: 293 EAPTPNMDIPLEKNN 307
           E P    ++P +K +
Sbjct: 446 EEPENKHELPKQKES 460


>At4g14300 ribonucleoprotein like protein
          Length = 406

 Score = 37.7 bits (86), Expect = 0.011
 Identities = 22/77 (28%), Positives = 37/77 (47%), Gaps = 2/77 (2%)

Query: 296 TPNMDIPLEKNNENAGRAHAIFVANLPMSATVEQLDRAFKKFGPIKRDGIQV--RSNKGS 353
           T N++       +   +   IFV  LP + T E+  + F+ +GP+    I     +N+  
Sbjct: 87  TGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPR 146

Query: 354 CFGFVEFESAASMQSAL 370
            FGFV F+S  ++ S L
Sbjct: 147 GFGFVSFDSEDAVDSVL 163


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.313    0.129    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,245,675
Number of Sequences: 26719
Number of extensions: 418174
Number of successful extensions: 1951
Number of sequences better than 10.0: 161
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 1606
Number of HSP's gapped (non-prelim): 330
length of query: 393
length of database: 11,318,596
effective HSP length: 101
effective length of query: 292
effective length of database: 8,619,977
effective search space: 2517033284
effective search space used: 2517033284
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)