BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146564.8 - phase: 0 /pseudo
(430 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17610 putative non-LTR retroelement reverse transcriptase 170 1e-42
At2g17910 putative non-LTR retroelement reverse transcriptase 169 4e-42
At2g45230 putative non-LTR retroelement reverse transcriptase 155 4e-38
At1g25430 hypothetical protein 147 8e-36
At2g05200 putative non-LTR retroelement reverse transcriptase 145 3e-35
At2g41580 putative non-LTR retroelement reverse transcriptase 145 5e-35
At2g31080 putative non-LTR retroelement reverse transcriptase 145 5e-35
At2g16680 putative non-LTR retroelement reverse transcriptase 144 1e-34
At2g07650 putative non-LTR retrolelement reverse transcriptase 139 3e-33
At1g31030 F17F8.5 138 7e-33
At3g32110 non-LTR reverse transcriptase, putative 137 9e-33
At4g02490 137 1e-32
At1g47910 reverse transcriptase, putative 136 2e-32
At4g09710 RNA-directed DNA polymerase -like protein 136 3e-32
At1g24640 hypothetical protein 135 3e-32
At2g15510 putative non-LTR retroelement reverse transcriptase 135 4e-32
At2g23880 putative non-LTR retroelement reverse transcriptase 133 2e-31
At4g08830 putative protein 125 6e-29
At2g25550 putative non-LTR retroelement reverse transcriptase 118 5e-27
At3g44650 putative protein 118 7e-27
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 170 bits (431), Expect = 1e-42
Identities = 120/432 (27%), Positives = 201/432 (45%), Gaps = 24/432 (5%)
Query: 4 LLRGFEMASGLKVNFAKSCLI-GVNVGREFMDAACNFMNCREGSPPFQYLGLPVGANPRR 62
+L+ +E ASG VNF KS ++ G + + + + +YLGLP +
Sbjct: 157 VLKLYEKASGQAVNFQKSAILFGKGLDFRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNK 216
Query: 63 LSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRVVRI 122
+ + + + +++++W NK +S G+ VL+ +++ AIP + ++ F LP+++ ++
Sbjct: 217 TNAFSFIAQTMDQKMDNWYNKLLSPAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSA 276
Query: 123 QREFLWGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQPL* 182
R F W K+ WV W+ + P+ GGL +RD+K NI+LLAK WR++Q L
Sbjct: 277 MRWFWWSNTKVKHKIPWVAWSKLNDPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLM 336
Query: 183 KDVLRCKYGSRINFLLDPIYNSWSSLASRWWLDLMSLEGVVGANWFNREMVRKVGNGETT 242
V + KY + LLD S SS A W ++ G +R + GNG
Sbjct: 337 ARVFKAKYFPK-ERLLDAKATSQSSYA---WKSILH-----GTKLISRGLKYIAGNGNNI 387
Query: 243 RFWLDHWVGNEALYLTFPRLFSISSQKEAMVGEVWVDGDWNLTWRRSLFVWEEGLIHILL 302
+ W D+W+ SI SQ + V ++ ++G WN L + + + HI
Sbjct: 388 QLWKDNWLPLNPPRPPVGTCDSIYSQLK--VSDLLIEGRWNEDLLCKL-IHQNDIPHI-- 442
Query: 303 DELEGREVSEPMDSWWWKLEEGGICSVSSSYSLHVKLQMP-----PEPLENTKAMVFGSV 357
++ D+ W G SV S Y L KL P P E + VF ++
Sbjct: 443 -RAIRPSITGANDAITWIYTHDGNYSVKSGYHLLRKLSQQQHASLPSPNEVSAQTVFTNI 501
Query: 358 WKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGETAAHLFLHCDM 417
WK P K+ F W+S + +PT NL +RR++ ++ C C + E HL C +
Sbjct: 502 WKQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITDDT---CQRCGEASEDVNHLLFQCRV 558
Query: 418 SFKVWSMVYCRL 429
S ++W + +L
Sbjct: 559 SKEIWEQAHIKL 570
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 169 bits (427), Expect = 4e-42
Identities = 117/439 (26%), Positives = 205/439 (46%), Gaps = 38/439 (8%)
Query: 1 LKALLRGFEMASGLKVNFAKSCL-IGVNVGREFMDAACNFMNCREGSPPFQYLGLPVGAN 59
L L + SG +N KS + G NV + D + +YLGLP +
Sbjct: 677 LMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLS 736
Query: 60 PRRLSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRV 119
+ + + + L+ RL W K +S GG+ VLL ++ A+P + ++ FKLP + +++
Sbjct: 737 GSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKL 796
Query: 120 VRIQREFLWGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQ 179
+ +F W + +K+ W+ W + LP+D+GG G +D++ N +LLAK WR++Q +
Sbjct: 797 TTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKG 856
Query: 180 PL*KDVLRCKYGSRINFLLDPIYNSWSSLASRWWLDLMSLEGVVGANWFNREMVRK---- 235
L V + +Y S +FL + S S W ++ F RE++ +
Sbjct: 857 SLFSRVFQSRYFSNSDFL----SATRGSRPSYAWRSIL----------FGRELLMQGLRT 902
Query: 236 -VGNGETTRFWLDHWV--GNEALYLTFPRLFSISSQKEAMVGEVWVDGDWNLTWRRSLFV 292
+GNG+ T W D W+ G+ L R ++ + ++ +WNL R LF
Sbjct: 903 VIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQLIDP--TSRNWNLNMLRDLFP 960
Query: 293 WEEGLIHILLDELEGREVSEPMDSWWWKLEEGGICSVSSSY-----SLHVKLQMPPEPLE 347
W++ + I+L + R + DS+ W G+ SV + Y +H +L +
Sbjct: 961 WKD--VEIILKQ---RPLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKP 1015
Query: 348 NTKAMVFGSVWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGET 407
+ ++ F +W T K+ +F W++L IP +D L R I S C+ CD ET
Sbjct: 1016 SVNSL-FDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGI---RSDDGCLMCDTENET 1071
Query: 408 AAHLFLHCDMSFKVWSMVY 426
H+ C ++ +VW++ +
Sbjct: 1072 INHILFECPLARQVWAITH 1090
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 155 bits (392), Expect = 4e-38
Identities = 114/434 (26%), Positives = 194/434 (44%), Gaps = 30/434 (6%)
Query: 4 LLRGFEMASGLKVNFAKSCL-IGVNVGREFMDAACNFMNCREGSPPFQYLGLPVGANPRR 62
++ + +ASG +VN+ KS + G ++ E + YLGLP +
Sbjct: 702 IIEEYSLASGQRVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSK 761
Query: 63 LSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRVVRI 122
++T L D L K++ W + ++S GG+ +LL AV A+P + ++ FK+P + +++ +
Sbjct: 762 VATLSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESV 821
Query: 123 QREFLWGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQPL* 182
EF W G+ + W W + P+ GGLG ++++ NI+LL K WR++ + L
Sbjct: 822 MAEFWWKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLM 881
Query: 183 KDVLRCKYGSRINFLLDPIYNSWSSLASRWWLDLMSLEGVVGANWFNREMVRKV-GNGET 241
V + +Y S+ DP+ S S W + + ++ ++ +R V GNGET
Sbjct: 882 AKVFKSRYFSK----SDPLNAPLGSRPSFAWKSIYEAQVLI------KQGIRAVIGNGET 931
Query: 242 TRFWLDHWVG-NEALYLTFPRLFSISSQKEAMVGEVWVD------GDWNLTWRRSLFVWE 294
W D W+G A + + SQ A V D DWN W ++
Sbjct: 932 INVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWN--WNLVSLLFP 989
Query: 295 EGLIHILLDELEGREVSEPMDSWWWKLEEGGICSVSSSYSLHVKL----QMPPEPLENTK 350
+ +L G + E D + W+ G SV S Y + ++ P E L+ +
Sbjct: 990 DNTQENILALRPGGK--ETRDRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSL 1047
Query: 351 AMVFGSVWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGETAAH 410
+F +WK P K+ F W+ + + + NL R + +S CV C GET H
Sbjct: 1048 DPIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKS---CVRCPSHGETVNH 1104
Query: 411 LFLHCDMSFKVWSM 424
L C + W++
Sbjct: 1105 LLFKCPFARLTWAI 1118
>At1g25430 hypothetical protein
Length = 1213
Score = 147 bits (372), Expect = 8e-36
Identities = 127/431 (29%), Positives = 195/431 (44%), Gaps = 31/431 (7%)
Query: 5 LRGFEMASGLKVNFAKS--CLIGVNVGREFMDAACNFMNCREGSPPFQYLGLPVGANPRR 62
L F SGLKVN KS L G+N +AA F G+ P +YLGLP+ R
Sbjct: 719 LDDFASWSGLKVNKDKSHLYLAGLNQLESNANAAYGFPI---GTLPIRYLGLPLMNRKLR 775
Query: 63 LSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRVVRI 122
++ +EPLL+ + R SW NK +S GR+ L+++V+ NF+++ F LP KR+ +
Sbjct: 776 IAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESL 835
Query: 123 QREFLWGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQPL* 182
FLW G K V WA +CLP+ +GGLG+R + N +L + WRL + L
Sbjct: 836 CSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLW 895
Query: 183 KDVLRCKYGSRINF--LLDPIYNSWSSLASRWWLDLMSLEGVVGANWFNREMVRKVGNGE 240
D + SR +F + +SW+ W L+SL + ++ +V KVGNG
Sbjct: 896 ADWQHLHHLSRGSFWAVEGGQSDSWT------WKRLLSLRPLA-----HQFLVCKVGNGL 944
Query: 241 TTRFWLDHWVGNEALYLTFPRL--FSISSQKEAMVGEVWVDGDWNLTWRRSLFVWEEGLI 298
+W D+W L+ + S+ A V + + W L RS +G+
Sbjct: 945 KADYWYDNWTSLGPLFRIIGDIGPSSLRVPLLAKVASAFSEDGWRLPVSRS--APAKGIH 1002
Query: 299 HILLDELEGREVSEPMDSWWWKLEEGGICSVSSSYSLHVKLQMPPEPLENTKAMVFGSVW 358
L E +D + W + G +C S+ K P K+ S+W
Sbjct: 1003 DHLCTVPVPSTAQEDVDRYEWSV-NGFLCQGFSA----AKTWEAIRPKATVKSWA-SSIW 1056
Query: 359 KSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGETAAHLFLHCDMS 418
K W S L+R+ T+ L + +++ CV C E+ HL L C+ S
Sbjct: 1057 FKGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSDA---CVLCSFASESRDHLLLICEFS 1113
Query: 419 FKVWSMVYCRL 429
+VW +V+ R+
Sbjct: 1114 AQVWRLVFRRI 1124
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 145 bits (367), Expect = 3e-35
Identities = 108/435 (24%), Positives = 196/435 (44%), Gaps = 42/435 (9%)
Query: 1 LKALLRGFEMASGLKVNFAKSCL-IGVNVGREFMDAACNFMNCREGSPPFQYLGLPVGAN 59
L +L + ASG +NF KS + R + R+ +YLGLP
Sbjct: 594 LSEILSRYGKASGQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFG 653
Query: 60 PRRLSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRV 119
R+ + ++D ++++ +SW ++++S G+ V+L AVL ++P + ++ FKLP + +++
Sbjct: 654 RRKRDIFGAIIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKI 713
Query: 120 VRIQREFLWGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQ 179
+ F W +K WV W+ + P++ GGLG RD++ N SLLAK WRL+ +
Sbjct: 714 QSLLTRFWWDTKPDVRKTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPE 773
Query: 180 PL*KDVLRCKYGSRINFLLDPIYNSWSSLASRWWLDLMSLEGVV--GANWFNREMVRKVG 237
L +L KY +F+ + S S W +++ ++ G W +
Sbjct: 774 SLLSRILLGKYCHSSSFMECKL----PSQPSHGWRSIIAGREILKEGLGWL-------IT 822
Query: 238 NGETTRFWLDHWVG-NEALYLTFPRLFSISSQK-EAMVGEVWVDGDWNLTWRRSLFVWEE 295
NGE W D W+ ++ L P L + A++ + + DWN
Sbjct: 823 NGEKVSIWNDPWLSISKPLVPIGPALREHQDLRVSALINQNTLQWDWN------------ 870
Query: 296 GLIHILLDELEG--REVSEP----MDSWWWKLEEGGICSVSSSYSLHVKLQMPPEPLENT 349
I ++L E +++ P +D W + G + S Y + + P+ T
Sbjct: 871 -KIAVILPNYENLIKQLPAPSSRGVDKLAWLPVKSGQYTSRSGYGI---ASVASIPIPQT 926
Query: 350 KAMVFGSVWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGETAA 409
+ ++WK T K+ W++ ++ +P L++R I P+ + RC E+
Sbjct: 927 QFNWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHISPSAACHRC----GAPESTT 982
Query: 410 HLFLHCDMSFKVWSM 424
HLF HC+ + +VW +
Sbjct: 983 HLFFHCEFAAQVWEL 997
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 145 bits (365), Expect = 5e-35
Identities = 112/425 (26%), Positives = 186/425 (43%), Gaps = 36/425 (8%)
Query: 12 SGLKVNFAKSCL-IGVNVGREFMDAACNFMNCREGSPPFQYLGLPVGANPRRLSTWEPLL 70
SG +N KS + G V E N + +YLGLP + + +
Sbjct: 439 SGQMINSEKSAITFGAKVNEETKQWIMNRSGIQTEGGTGKYLGLPECFQGSKQVLFGFIK 498
Query: 71 DVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRVVRIQREFLWGG 130
+ L+ RL+ W K +S GG+ +LL ++ A P + + F+L + ++ + +F W
Sbjct: 499 EKLQSRLSGWYAKTLSQGGKDILLKSIAMAFPVYAMTCFRLSKTLCTKLTSVMMDFWWNS 558
Query: 131 VNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQPL*KDVLRCKY 190
V KK+ W+ + LP+ GG G +D++ N +LLAK RL L +L+ +Y
Sbjct: 559 VQDKKKIHWIGAQKLMLPKFLGGFGFKDLQCFNQALLAKQASRLHTDSDSLLSQILKSRY 618
Query: 191 GSRINFL-----LDPIYNSWSSLASRWWLDLMSLEGVVGANWFNREMVRKVGNGETTRFW 245
+FL P Y +W S+ + G + + +GNGE T W
Sbjct: 619 YMNSDFLSATKGTRPSY-AWQSI-------------LYGRELLVSGLKKIIGNGENTYVW 664
Query: 246 LDHWVGNEALYLTFPRLFSISSQKEAMVGEVW--VDGDWNLTWRRSLFVWEEGLIHILLD 303
+D+W+ ++ P I + V ++ +WNL R LF W+E I I+
Sbjct: 665 MDNWIFDDK--PRRPESLQIMVDIQLKVSQLIDPFSRNWNLNMLRDLFPWKE--IQIICQ 720
Query: 304 ELEGREVSEPMDSWWWKLEEGGICSVSSSYSL---HVKLQMPPEPLENTKA-MVFGSVWK 359
+ R ++ DS+ W G+ +V S Y L V QM E E +FG +W
Sbjct: 721 Q---RPMASRQDSFCWFGTNHGLYTVKSEYDLCSRQVHKQMFKEAEEQPSLNPLFGKIWN 777
Query: 360 SPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGETAAHLFLHCDMSF 419
+ K+ VF W+ L + +D L R +L + C C + ET H+ C ++
Sbjct: 778 LNSAPKIKVFLWKVLKGAVAVEDRLRTRGVLIEDG---CSMCPEKNETLNHILFQCPLAR 834
Query: 420 KVWSM 424
+VW++
Sbjct: 835 QVWAL 839
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 145 bits (365), Expect = 5e-35
Identities = 128/439 (29%), Positives = 197/439 (44%), Gaps = 49/439 (11%)
Query: 1 LKALLRGFEMASGLKVNFAKSCLI-GVNVGREFMDAACNFMNCREGSPPFQYLGLPVGAN 59
++ +L F ASG KV+ KS + NV RE +YLG+P+
Sbjct: 562 IRRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQLISEESGIGCTKELGKYLGMPILQK 621
Query: 60 PRRLSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRV 119
T+ +L+ + RL W + +SL GR+ L AVL++IP ++ LPV +
Sbjct: 622 RMNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTL 681
Query: 120 VRIQREFLWGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQ 179
R R FLWG KK + W +C P+ +GG+G+R + +N +L+AK WRL+Q ++
Sbjct: 682 DRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKE 741
Query: 180 PL*KDVLRCKYGSRINFLLDPIYNSWSSLASRW---WLDL-MSLEGVV--GANWFNREMV 233
L V+R KY ++ + D SW RW W + + L VV G W
Sbjct: 742 SLWARVVRKKY--KVGGVQD---TSWLKPQPRWSSTWRSVAVGLREVVVKGVGWV----- 791
Query: 234 RKVGNGETTRFWLDHWVGNEALYLTFPRLFSISSQKEAMVGEVWVDGD-WNL-------- 284
G+G T RFWLD W+ E L + ++ + + W+ G WNL
Sbjct: 792 --PGDGCTIRFWLDRWLLQEPLVELGTDMIP-EGERIKVAADYWLPGSGWNLEILGLYLP 848
Query: 285 -TWRRSLFVWEEGLIHILLDELEGREVSEPMDSWWWKLEEGGICSVSSSYSLHVKLQMPP 343
T +R L ++ + L G E+S WK + G +V S+YSL LQ
Sbjct: 849 ETVKRRLL---SVVVQVFLG--NGDEIS-------WKGTQDGAFTVRSAYSL---LQGDV 893
Query: 344 EPLENTKAMVFGSVWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQ 403
N + F +WK TP +V VF W + I T ++R + +E+++ C C+
Sbjct: 894 GDRPNMGSF-FNRIWKLITPERVRVFIWLVSQNVIMTNVERVRRHL--SENAI-CSVCNG 949
Query: 404 VGETAAHLFLHCDMSFKVW 422
ET H+ C +W
Sbjct: 950 AEETILHVLRDCPAMEPIW 968
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 144 bits (362), Expect = 1e-34
Identities = 105/425 (24%), Positives = 185/425 (42%), Gaps = 36/425 (8%)
Query: 12 SGLKVNFAKSCL-IGVNVGREFMDAACNFMNCREGSPPFQYLGLPVGANPRRLSTWEPLL 70
SG +N KS + GV V + N +YLGLP + + + +
Sbjct: 662 SGQLINVEKSSITFGVKVDEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSKQDLFGYIK 721
Query: 71 DVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRVVRIQREFLWGG 130
+ L+ L+ W +K +S GG+ +LL ++ A+P + + F+LP + ++ + +F W
Sbjct: 722 EKLQSHLSGWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNS 781
Query: 131 VNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQPL*KDVLRCKY 190
+ K+ W+ + LP+ GG G +D++ N +LLAK WRL + + + + +Y
Sbjct: 782 MEFSNKIHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRY 841
Query: 191 GSRINFL-----LDPIYNSWSSLASRWWLDLMSLEGVVGANWFNREMVRKVGNGETTRFW 245
+FL P Y +W S+ + G N + R +GNGE T W
Sbjct: 842 FMNTDFLNARQGTRPSY-TWRSI-------------LYGRELLNGGLKRLIGNGEQTNVW 887
Query: 246 LDHWV--GNEALYLTFPRLFSISSQKEAMVGEVWVDGDWNLTWRRSLFVWEEGLIHILLD 303
+D W+ G+ + L +I + ++ + +WNL LF E + +++
Sbjct: 888 IDKWLFDGHSRRPMNLHSLMNIHMKVSHLIDP--LTRNWNLKKLTELF--HEKDVQLIMH 943
Query: 304 ELEGREVSEPMDSWWWKLEEGGICSVSSSYSLH----VKLQMPPEPLENTKAMVFGSVWK 359
+ R + DS+ W G+ +V S Y K + + +F VW
Sbjct: 944 Q---RPLISSEDSYCWAGTNNGLYTVKSGYERSSRETFKNLFKEADVYPSVNPLFDKVWS 1000
Query: 360 SPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGETAAHLFLHCDMSF 419
T K+ VF W++L + +D L R I + C+FC + ET HL C +
Sbjct: 1001 LETVPKIKVFMWKALKGALAVEDRLRSRGIRTADG---CLFCKEEIETINHLLFQCPFAR 1057
Query: 420 KVWSM 424
+VW++
Sbjct: 1058 QVWAL 1062
>At2g07650 putative non-LTR retrolelement reverse transcriptase
Length = 732
Score = 139 bits (350), Expect = 3e-33
Identities = 115/437 (26%), Positives = 185/437 (42%), Gaps = 45/437 (10%)
Query: 1 LKALLRGFEMASGLKVNFAKSCLI-GVNVGREFMDAACNFMNCREGSPPFQYLGLPVGAN 59
++ +L F +ASG KV+ KS + NV R+ + +YLG+PV
Sbjct: 224 IRRVLERFCVASGQKVSLEKSKIFFSENVSRDLGKLISDESGISSTRELGKYLGMPVLQR 283
Query: 60 PRRLSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRV 119
T+ +L+ L RL W +++SL GRV L AVL++IP ++ LP +
Sbjct: 284 RINKDTFGDILEKLTTRLAGWKGRFLSLAGRVTLTKAVLSSIPVHTMSTIALPKSTLDGL 343
Query: 120 VRIQREFLWGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQ 179
++ R FLWG +K + W VC PR +GGLG+R + +N +LL+K WRL+Q
Sbjct: 344 DKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYH 403
Query: 180 PL*KDVLRCKYGSRINFLLDPIYNSWSSLASRWWLDL-MSLEGVV--GANWFNREMVRKV 236
L ++RC Y R+ + D + S+ S W + + + VV G +W +
Sbjct: 404 SLWARIMRCNY--RVQDVRDGAWTKVRSVCSSTWRSVALGMREVVIPGLSWV-------I 454
Query: 237 GNGETTRFWLDHWVGNEALYLTFPRLFSISSQKEAMVGEV---WVDGDWNLTWRRSLFVW 293
G+G FW+D W+ N L E +V E W G RR+ W
Sbjct: 455 GDGREILFWMDKWLTNIPL-------------AELLVQEPPAGW-KGMRARDLRRNGIGW 500
Query: 294 EEGLI--------HILLDELEGREVSEPMDSWWWKLEEGGICSVSSSYSLHVKLQMPPEP 345
+ I + L +++ D W + G VS++YS + + P +
Sbjct: 501 DMATIAPYISSYNRLQLQSFVLDDITGARDRISWGESQDGRFKVSTTYSFLTRDEAPRQD 560
Query: 346 LENTKAMVFGSVWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVG 405
++ F VW P +V +F W I T +R + ++ C C
Sbjct: 561 MKR----FFDRVWSVTAPERVRLFLWLVAQQAIMTNQERHRRHL---STTTICQVCKGAK 613
Query: 406 ETAAHLFLHCDMSFKVW 422
E+ H+ C +W
Sbjct: 614 ESIIHVLRDCPAMEGIW 630
>At1g31030 F17F8.5
Length = 872
Score = 138 bits (347), Expect = 7e-33
Identities = 110/420 (26%), Positives = 185/420 (43%), Gaps = 34/420 (8%)
Query: 12 SGLKVNFAKSCLIGVNVGREFMDAACNFMNCREGSPPFQYLGLPVGANPRRLSTWEPLLD 71
SGL+++ KS L V G P +YLGLP+ + + PLL+
Sbjct: 379 SGLRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLE 438
Query: 72 VLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRVVRIQREFLWGGV 131
+KKR+ +W ++ S GR L+ +VL +I NF+LA F+LP + + + ++ FLW G
Sbjct: 439 QIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGS 498
Query: 132 NGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQPL*KDVLRCKYG 191
+ W VC P+ +GGLG+R++K N K WR++ + L K+
Sbjct: 499 EMSSHKAKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISN-----SNSLWTKWV 553
Query: 192 SRINFLLDPIYN--SWSSLASRWWLDLMSLEGVVGANWFNREMVRKVGNGETTRFWLDHW 249
+ I++ +S+ S W ++ + V A F+R +VGNGE+ FW DHW
Sbjct: 554 AEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDV--AKSFSRV---EVGNGESASFWYDHW 608
Query: 250 VGNEALYLTF--PRLFSISSQKEAMVGEVWVDGDWNLTWRRSLFVWEEGLIHILLDELEG 307
+ L T + +EA V + W RRS L++ + + +
Sbjct: 609 SAHGRLIDTVGDKGTIDLGIPREASVADAWT--------RRSRRRHRTSLLNEIEEMMAY 660
Query: 308 REV--SEPMDSWWWKLEEGGICSVSSSYSLHVKLQMPPEPLENTKAMV--FGSVWKSPTP 363
+ + S+ D+ W+ + + H + ++ T + V VW
Sbjct: 661 QRIHHSDAEDTVLWR-------GKNDVFKPHFSTRDTWHLIKATSSTVSWHKGVWFRHAT 713
Query: 364 FKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGETAAHLFLHCDMSFKVWS 423
K + +W ++ +R+PT D +LK + S CV C +T HLF C + VW+
Sbjct: 714 PKYALCTWLAIHNRLPTGDRMLKWNSSGSVSG-NCVLCTNNSKTLEHLFFSCSYASTVWA 772
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 137 bits (346), Expect = 9e-33
Identities = 114/433 (26%), Positives = 190/433 (43%), Gaps = 25/433 (5%)
Query: 1 LKALLRGFEMASGLKVNFAKSCL-IGVNVGREFMDAACNFMNCREGSPPFQYLGLPVGAN 59
L+ +L F ASG KV+ KS + NV R+ + +YLG+P+
Sbjct: 1238 LRGVLEKFCGASGQKVSLEKSKIYFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQK 1297
Query: 60 PRRLSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRV 119
T+ ++ RL W + +S GR+ L AVL +I ++ KLP +
Sbjct: 1298 RINKETFGEVIKRFSSRLAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGL 1357
Query: 120 VRIQREFLWGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQ 179
++ R FLWG KK V W VCLPR +GGLG+R +N +L+AK WR++
Sbjct: 1358 DKVSRAFLWGSTLEKKKQHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGS 1417
Query: 180 PL*KDVLRCKYGSRINFLLDPIYNSWSSLASRWWLDLMSLEGVVGANWFNREMVRKVGNG 239
L V+R KY ++ + D +W+ S W S+ GV + RE +G+G
Sbjct: 1418 SLWAQVVRSKY--KVGDVHD---RNWTVAKSNWSSTWRSV-GVGLRDVIWREQHWVIGDG 1471
Query: 240 ETTRFWLDHWVGNEALYLTFPRLFSISSQKEAMVGEVWVDG-DWNLTWRRSLFVWEE--- 295
RFW D W+ + S+ +Q ++W DG W+++ + + FV +
Sbjct: 1472 RQIRFWTDRWLSETPIADDSIVPLSL-AQMLCTARDLWRDGTGWDMS-QIAPFVTDNKRL 1529
Query: 296 GLIHILLDELEGREVSEPMDSWWWKLEEGGICSVSSSYSLHVKLQMPPEPLENTKAMVFG 355
L+ +++D + G D W + G +V S++++ P + + + ++G
Sbjct: 1530 DLLAVIVDSVTGAH-----DRLAWGMTSDGRFTVKSAFAMLTNDDSPRQDMSS----LYG 1580
Query: 356 SVWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGETAAHLFLHC 415
VWK P +V VF W + I T +R + ++ C C E+ H+ C
Sbjct: 1581 RVWKVQAPERVRVFLWLVVNQAIMTNSERKRRHLCDSDV---CQVCRGGIESILHVLRDC 1637
Query: 416 DMSFKVWSMVYCR 428
+W + R
Sbjct: 1638 PAMSGIWDRIVPR 1650
>At4g02490
Length = 657
Score = 137 bits (344), Expect = 1e-32
Identities = 120/437 (27%), Positives = 191/437 (43%), Gaps = 55/437 (12%)
Query: 4 LLRGFEMASGLKVNFAKSCLI--GVNVGREFMDAACNFMNCREGSPPFQYLGLPVGANPR 61
+L F+ SGL +N K+ L+ G N R + AA + +GS P +YLG+P+ +
Sbjct: 265 ILDVFKKGSGLGINLQKTALLLDGGNFERNRIMAAS--LGVSQGSLPVRYLGVPLMSQKM 322
Query: 62 RLSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRVVR 121
+ ++PL+D + R SW +++S GR+ LL +V+ + NF+ + F LP + ++ +
Sbjct: 323 KKHDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWASIFILPNQCLHKLEQ 382
Query: 122 IQREFLWGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQPL 181
+ FLW G + + W VC ++ GGLG++ + N L K W L L
Sbjct: 383 MCNAFLWSGAPNSAREAKISWDIVCSSKESGGLGLKRLSSWNKVLALKLIWLLFTASGSL 442
Query: 182 *KDVLRCKYGSRINFLLDPIYNSWSSLASRWWLDLMSLEGVVGANWFNREMVRKVGNGET 241
W S W L L V ++ +VG+G T
Sbjct: 443 -----------------------WVSWVRWVWRKLCKLREVA-----RPFVICEVGSGIT 474
Query: 242 TRFWLDHWVGNEALY----LTFPRLFSISSQKEAMVGEVWVDGDWNLTWRRS---LFVWE 294
RFW D+W G+ L LT P+L +S ++V + + DW + RS + +
Sbjct: 475 ARFWQDNWTGHGPLIHLTGLTGPQLVGLSI--TSVVRDAIRNDDWWIASSRSRNPVIL-- 530
Query: 295 EGLIHILLDELEGREVSEPMDSWWWKLEEGGICSVSSSYSLHVKLQMPPEPLENTKAMVF 354
L+ LL + E DS+ WK+ + S S+ LQ + KA
Sbjct: 531 --LLKSLLPPVGNLVDCEHDDSYLWKVGDRVPSSKFSTADTWRALQPFSVSVSWHKA--- 585
Query: 355 GSVWKSPTPFKVVVFSWQSLLDRIPTKDNLLK-RRILPTESSVRCVFCDQVGETAAHLFL 413
VW + K SW + +R+ T+D L I+P E CV C+ V ET HLF
Sbjct: 586 --VWFTNQVPKHAFISWVTAWNRLHTRDRLRSWGLIVPAE----CVLCNLVDETRDHLFF 639
Query: 414 HCDMSFKVWSMVYCRLG 430
C S ++W+ +G
Sbjct: 640 ACRFSSRIWTFFMRAVG 656
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 136 bits (343), Expect = 2e-32
Identities = 104/430 (24%), Positives = 187/430 (43%), Gaps = 32/430 (7%)
Query: 4 LLRGFEMASGLKVNFAKSCL-IGVNVGREFMDAACNFMNCREGSPPFQYLGLPVGANPRR 62
+L+ +E SG ++NF+KS + G V + YLGLP +
Sbjct: 486 ILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSK 545
Query: 63 LSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRVVRI 122
+ + D L+ R+N W K++S GG+ V++ +V +P + ++ F+LP + ++
Sbjct: 546 TKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSA 605
Query: 123 QREFLWGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQPL* 182
+F W + + W+ W +C + GGLG R++ N +LLAK WRL+ L
Sbjct: 606 VAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLF 665
Query: 183 KDVLRCKYGSRINFLLDPIYNSWSSLASRWWLDLMSLEGVVGANWFNREMVRKVGNGETT 242
V + +Y + N P+ + S S W ++S +V + ++++VG+G +
Sbjct: 666 AKVFKGRYFRKSN----PLDSIKSYSPSYGWRSMISARSLV-----YKGLIKRVGSGASI 716
Query: 243 RFWLDHWVGNEALYLTFPR--LFSISSQKEAMVGEVWVDGD---WNLTWRRSLFVWEEGL 297
W D W+ + FPR + S ++ + +D WN+ + LF E+
Sbjct: 717 SVWNDPWIPAQ-----FPRPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELFDPED-- 769
Query: 298 IHILLDELEGREVSEP--MDSWWWKLEEGGICSVSSSY-SLHVKLQMPPEPLENTKAMVF 354
+ + + P D+ W + G +V S Y + + L + +
Sbjct: 770 ----VPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLK 825
Query: 355 GSVWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGETAAHLFLH 414
+WK P K+ F WQ L +P +NL KR IL + CV C E+ H
Sbjct: 826 AYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKG---CVSCGASEESINHTLFQ 882
Query: 415 CDMSFKVWSM 424
C + ++W++
Sbjct: 883 CHPARQIWAL 892
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 136 bits (342), Expect = 3e-32
Identities = 107/428 (25%), Positives = 197/428 (46%), Gaps = 34/428 (7%)
Query: 1 LKALLRGFEMASGLKVNFAKSCL-IGVNVGREFMDAACNFMNCREGSPPFQYLGLPVGAN 59
L +L+ +E+ASG +N AKS + ++ + +YLGLP
Sbjct: 640 LSNILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFG 699
Query: 60 PRRLSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRV 119
R+ + ++D +++R +SW +++S G+ +LL AVL+++P++ + FKLP + K++
Sbjct: 700 RRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQI 759
Query: 120 VRIQREFLWGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQ 179
+ F W +K+ WV W + LP ++GGLG R+++ AK WR+++
Sbjct: 760 QSVLTRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGFREIE-------AKLSWRILKEPH 812
Query: 180 PL*KDVLRCKYGSRINFLLDPIYNSWSSLASRWWLDLMSLEGVVGANWFNREMVRKVGNG 239
L VL KY + +F+ ++ S AS W +++ G + + + +G G
Sbjct: 813 SLLSRVLLGKYCNTSSFM---DCSASPSFASHGWRGILA-----GRDLLRKGLGWSIGQG 864
Query: 240 ETTRFWLDHWVGNEALYLTFPRLFSISSQKEAMVGEVWVDG--DWNL-TWRRSLFVWEEG 296
++ W + W+ + P + K+ V ++ WN+ R+ L +E+
Sbjct: 865 DSINVWTEAWLSPSSPQT--PIGPPTETNKDLSVHDLICHDVKSWNVEAIRKHLPQYEDQ 922
Query: 297 LIHILLDELEGREVSEPMDSWWWKLEEGGICSVSSSYSLHVKLQMPPEPLENTKAMVFGS 356
+ I ++ L DS W + G + + Y+L P L+ +
Sbjct: 923 IRKITINAL------PLQDSLVWLPVKSGEYTTKTGYALAKLNSFPASQLDFNWQK---N 973
Query: 357 VWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGETAAHLFLHCD 416
+WK T KV F W+++ +P + L +R I E+ V C C Q E++ HL L C
Sbjct: 974 IWKIHTSPKVKHFLWKAMKGALPVGEALSRRNI---EAEVTCKRCGQT-ESSLHLMLLCP 1029
Query: 417 MSFKVWSM 424
+ KVW +
Sbjct: 1030 YAKKVWEL 1037
>At1g24640 hypothetical protein
Length = 1270
Score = 135 bits (341), Expect = 3e-32
Identities = 106/436 (24%), Positives = 190/436 (43%), Gaps = 60/436 (13%)
Query: 1 LKALLRGFEMASGLKVNFAKSCL-IGVNVGREFMDAACNFMNCREGSPPFQYLGLPVGAN 59
L+ +L+ + A+G +N KS + G V + + YLGLP +
Sbjct: 662 LQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFS 721
Query: 60 PRRLSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRV 119
++ L D LK++L+ W + +S GG+ VLL +V A+P F ++ FKLP+ + +
Sbjct: 722 GSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENL 781
Query: 120 VRIQREFLWGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQ 179
F W + +K+ W W +CLP+D GGLG RD++ N +LLAK WRL+
Sbjct: 782 ESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPD 841
Query: 180 PL*KDVLRCKYGSRINFLLDPIYNSWSSLASRWWLDLMSLEGVVGANWFNREMVRKVGNG 239
L +L+ +Y +FL + S S W ++ G ++ + ++VG+G
Sbjct: 842 CLLSRLLKSRYFDATDFLDAAL----SQRPSFGWRSIL-----FGRELLSKGLQKRVGDG 892
Query: 240 ETTRFWLDHWVGNEALYLTFPR--LFSISSQKEAMVGEVWVDGDWNLTWRRSLFVWEEGL 297
+ W+D W+ + + + ++ ++ + +A++ G W+ LF+ E+
Sbjct: 893 ASLFVWIDPWIDDNGFRAPWRKNLIYDVTLKVKALLNP--RTGFWDEEVLHDLFLPED-- 948
Query: 298 IHILLDELEGREVSEPMDSWWWKLEEGGICSVSSSY---------SLHVKLQMPPEPLEN 348
+L + V D + WKL + G SV S+Y +L ++ M P L
Sbjct: 949 ---ILRIKAIKPVISQADFFVWKLNKSGDFSVKSAYWLAYQTKSQNLRSEVSMQPSTLG- 1004
Query: 349 TKAMVFGSVWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGETA 408
+ VW T K+ +F W+ C ++GE+
Sbjct: 1005 ----LKTQVWNLQTDPKIKIFLWK---------------------------VCGELGEST 1033
Query: 409 AHLFLHCDMSFKVWSM 424
H C +S ++W++
Sbjct: 1034 NHTLFLCPLSRQIWAL 1049
>At2g15510 putative non-LTR retroelement reverse transcriptase
Length = 1138
Score = 135 bits (340), Expect = 4e-32
Identities = 119/437 (27%), Positives = 196/437 (44%), Gaps = 49/437 (11%)
Query: 1 LKALLRGFEMASGLKVNFAKSCLIGV--NVGREFMDAACNFMNCREGSPPFQYLGLPVGA 58
+KALL S L + A+ + V N+ + + DA +N + S F L L
Sbjct: 486 VKALLVALGFHSSLFMCKAEKEEVSVLKNIFKVYGDATGQRINYEKSSITFGALIL---- 541
Query: 59 NPRRLSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKR 118
+ + D LK RL+ W + +SLGG+ +LL AV A+ + ++ FKL K
Sbjct: 542 --------DYIKDKLKSRLSGWFARTLSLGGKEILLKAVAMAMQVYAMSCFKLTKTTCKN 593
Query: 119 VVRIQREFLWGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPE 178
+ +F W + +K WV W +CL ++ GGLG RD++ N +LLAK WR++Q
Sbjct: 594 LTSAMSDFWWNALEHKRKTHWVSWEKLCLAKESGGLGFRDIESFNQALLAKQSWRILQYP 653
Query: 179 QPL*KDVLRCKYGSRINFL-----LDPIYNSWSSLASRWWLDLMSLEGVVGANWFNREMV 233
L + +Y FL + P Y S L R +L++ + +
Sbjct: 654 SFLFARFFKSRYFDDEEFLEADLGVRPSYACCSILFGR---ELLA-----------KGLR 699
Query: 234 RKVGNGETTRFWLDHWVGNEALYLTFPRLFSISSQKEAMVGEVWVDGDWNLTWRRSLFVW 293
++VGNG++ W+D W+ + A L R FS++ + V ++ D W+R L
Sbjct: 700 KEVGNGKSLNVWMDPWIFDIAPRLPLQRHFSVN--LDLKVNDLINFED--RCWKRDLL-- 753
Query: 294 EEGLIHILLDELEGREVSEPMDSWW-WKLEEGGICSVSSSY-----SLHVKLQMPPEPLE 347
EE ++ + R MD +W W + G SV S Y S + L L
Sbjct: 754 EELFYPTDVELITKRNPVVNMDDFWVWLHAKTGEYSVKSGYWLAFQSNKLDLIQQANLLP 813
Query: 348 NTKAMVFGSVWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGET 407
+T + VW + + K+ +F W+ L +P D +++R + RC C GE+
Sbjct: 814 STNGLK-EQVWSTKSSPKIKMFLWRILSAALPVADQIIRRGM---SIDPRCQICGDEGES 869
Query: 408 AAHLFLHCDMSFKVWSM 424
H+ C M+ +VW++
Sbjct: 870 TNHVLFTCSMARQVWAL 886
>At2g23880 putative non-LTR retroelement reverse transcriptase
Length = 1216
Score = 133 bits (334), Expect = 2e-31
Identities = 119/437 (27%), Positives = 194/437 (44%), Gaps = 49/437 (11%)
Query: 4 LLRGFEMASGLKVNFAKSCLIGVNVG---REFMDAACNFMNCREGSPPFQYLGLPVGANP 60
+L F GLK+ K+ L V R+ M + +F G P +YLGLP+
Sbjct: 445 VLNQFAAKLGLKICMEKTTLYLAGVSDHSRQLMSSRYSF---GVGKLPVRYLGLPLVTKR 501
Query: 61 RRLSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRVV 120
S + PL+D +++R+ W ++Y+S GR+ L+N+VL +I NF++ F+LP + +
Sbjct: 502 LTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEIN 561
Query: 121 RIQREFLWGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQP 180
RI LW G K V W +C P+ +GGLG++ ++ N K WRL+ +
Sbjct: 562 RISSALLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQ-- 619
Query: 181 L*KDVLRCKYGSRINFLLDPIY---NSWSSLASRWWLDLMSLEGVVGANWFNREMVR--- 234
D L K+ +R+N L + + S+L S W L+ +RE+ +
Sbjct: 620 ---DSLWVKW-TRMNLLKKESFWSIGTHSTLGSWIWRRLLK----------HREVAKSFC 665
Query: 235 --KVGNGETTRFWLDHWVGNEALY-LTFPR-LFSISSQKEAMVGEVWVDGDWNLTWRRSL 290
+V NG T FW D+W L LT R + + + E W L
Sbjct: 666 KIEVNNGVNTSFWFDNWSEKGPLINLTGARGAIDMGISRHMTLAEAWSRRRRKRHRVEIL 725
Query: 291 FVWEEGLIHILLDELEGREVSEPMDSWWWKLEEGGICSVSSSYSL--HVKLQMPPEPLEN 348
+EE ILL + + R + E D+ W+ +E + S+ H++ N
Sbjct: 726 NEFEE----ILLQKYQHRNI-ELEDAILWRGKEDVFKARFSTKDTWNHIRTS------SN 774
Query: 349 TKAMVFGSVWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGETA 408
+A G VW + K +W ++ +R+ T D ++ + CVFC ET
Sbjct: 775 QRAWHKG-VWFAHATPKFSFCAWLAIRNRLSTGDRMMTWN---NGTPTTCVFCSSPMETR 830
Query: 409 AHLFLHCDMSFKVWSMV 425
HLF C S ++W+ +
Sbjct: 831 DHLFFQCCYSSEIWTSI 847
>At4g08830 putative protein
Length = 947
Score = 125 bits (313), Expect = 6e-29
Identities = 111/426 (26%), Positives = 176/426 (41%), Gaps = 63/426 (14%)
Query: 1 LKALLRGFEMASGLKVNFAKSCLI-GVNVGREFMDAACNFMNCREGSPPFQYLGLPVGAN 59
++ +L F +ASG KV+ KS + NV R+ + +YLG+P+
Sbjct: 376 IRRILETFCIASGQKVSLDKSKIFFSKNVSRDLEKLISKESGIKSTRELGKYLGMPILQR 435
Query: 60 PRRLSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRV 119
T+ +L+ + RL W + +S GR+ L +VL+ IP ++ LP + +
Sbjct: 436 RINKDTFGEVLERVSSRLAGWKGRSLSFAGRLTLTKSVLSLIPIHTMSTISLPQSTLEGL 495
Query: 120 VRIQREFLWGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQ 179
++ R FL G KK+ V W VCLP+ +GGLG+R K +N +L++K WRL+
Sbjct: 496 DKLARVFLLGSSAEKKKLHLVAWDRVCLPKSEGGLGIRTSKCMNKALVSKVGWRLINDRY 555
Query: 180 PL*KDVLRCKYGSRINFLLDPIYNSWSSLASRWWLDLMSLEGVVGANWFNREMVRKVGNG 239
L +LR KY + ++ S SRW VGNG
Sbjct: 556 SLWARILRSKYRVGLREVV--------SRGSRW----------------------VVGNG 585
Query: 240 ETTRFWLDHWVGNEALYLTFPRLFSISSQKEAMVGEVWVDG-DWNLTWRRSLFVWEE--G 296
FW D+W+ +EAL + + +S+KE V ++W +G W L +
Sbjct: 586 RDILFWSDNWLSHEAL-INRAVIEIPNSEKELRVKDLWANGLGWKLDKIEPYISYHTRLE 644
Query: 297 LIHILLDELEGREVSEPMDSWWWKLEEGGICSVSSSYSLHVKLQMPPEPLENTKAMVFGS 356
L +++D + G D W G+ +V S+Y L L +P N A F
Sbjct: 645 LAAVVVDSVTGAR-----DRLSWGYSADGVFTVKSAYRL---LTEDHDPRPNMAAF-FDR 695
Query: 357 VWKSPTPFKVVVFSWQSLLDRIPTKDNLLKRRILPTESSVRCVFCDQVGETAAHLFLHCD 416
+W+ +V F W ++SV C C ET H+ C
Sbjct: 696 LWRVVALERVKTFLWHI------------------GDTSV-CQVCKGGDETILHVLKDCP 736
Query: 417 MSFKVW 422
+W
Sbjct: 737 SIAGIW 742
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 118 bits (296), Expect = 5e-27
Identities = 109/443 (24%), Positives = 187/443 (41%), Gaps = 50/443 (11%)
Query: 1 LKALLRGFEMASGLKVNFAKSCL-IGVNVGREFMDAACNFMNCREGSPPFQYLGLPVGAN 59
LK + +E SG K+N KS + G V + +YLGLP
Sbjct: 1081 LKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFG 1140
Query: 60 PRRLSTWEPLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRV 119
++ +E ++D +KKR ++W +++S G+ ++L +V A+P + ++ FKLP + +
Sbjct: 1141 RKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEI 1200
Query: 120 VRIQREFLWGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQ 179
+ F W + + + WV W + + +GGLG RD+ N +LLAK WRL+Q
Sbjct: 1201 ESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPN 1260
Query: 180 PL*KDVLRCKYGSRINFLLDPIYNSWSSLASRWWLDLMSLEGVVGANWFNREMVRKVGNG 239
L V++ +Y ++ L + S W L L+G+ R + +G+G
Sbjct: 1261 SLFARVMKARYFKDVSILDAKVRKQ----QSYGWASL--LDGIALLKKGTRHL---IGDG 1311
Query: 240 ETTRFWLDHWVGNEALYLTFPR-LFSISSQKEAMVGEVWVDGDWNLTWRR-SLFVWEEGL 297
+ R LD+ V + PR L + + KE + NL R+ S + W++
Sbjct: 1312 QNIRIGLDNIVDSHP-----PRPLNTEETYKEMTIN--------NLFERKGSYYFWDDSK 1358
Query: 298 IHILLDELEGREV-------SEPMDSWWWKLEEGGICSVSSSY-------SLHVKLQMPP 343
I +D+ + + S+ D W G +V S Y S ++ PP
Sbjct: 1359 ISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPP 1418
Query: 344 EPLENTKAMVFGSVWKSPTPFKVVVFSWQSLLDRIPTKDNLLKR--RILPTESSVRCVFC 401
+ K +W P K+ F W++L + T + L R RI P+ C C
Sbjct: 1419 HGSIDLKT----RIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPS-----CPRC 1469
Query: 402 DQVGETAAHLFLHCDMSFKVWSM 424
+ E+ H C + W +
Sbjct: 1470 HRENESINHALFTCPFATMAWRL 1492
>At3g44650 putative protein
Length = 762
Score = 118 bits (295), Expect = 7e-27
Identities = 70/242 (28%), Positives = 113/242 (45%), Gaps = 8/242 (3%)
Query: 8 FEMASGLKVNFAKSCLIGVNVGREFMDAACNFMNCREGSPPFQYLGLPVGANPRRLSTWE 67
F SGLK++ KS + + G P +YLGLP+ +
Sbjct: 281 FSKWSGLKISMEKSTIFSAGLSSTSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSVDYA 340
Query: 68 PLLDVLKKRLNSWGNKYVSLGGRVVLLNAVLNAIPNFYLAFFKLPVKVWKRVVRIQREFL 127
PL++ ++KR+ SW ++++S GR L+++++ + NF+L+ F+LP + + ++ FL
Sbjct: 341 PLIEQIRKRIGSWSSRFLSFAGRFNLISSIIWSSCNFWLSAFQLPRACIQEIEKLCSSFL 400
Query: 128 WGGVNGGKKVCWVKWATVCLPRDKGGLGVRDMKLVNISLLAKWRWRLVQPEQPL*KDVLR 187
W G N K + W VC P+ +GGLG+R +K N K WR++ L +
Sbjct: 401 WSGTNLNSKKAKISWNQVCKPKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVE 460
Query: 188 CKYGSRINFLLDPIYNSWSSLASRWWLDLMSLEGVVGANWFNREMVRKVGNGETTRFWLD 247
R F I ++L S W ++ GV R +VGNGE+T FW D
Sbjct: 461 HNLLKREIFW---IVKENANLGSWIWKKILKYRGVA-----KRFCKAEVGNGESTSFWFD 512
Query: 248 HW 249
W
Sbjct: 513 DW 514
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.325 0.141 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,939,696
Number of Sequences: 26719
Number of extensions: 504509
Number of successful extensions: 1439
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1208
Number of HSP's gapped (non-prelim): 125
length of query: 430
length of database: 11,318,596
effective HSP length: 102
effective length of query: 328
effective length of database: 8,593,258
effective search space: 2818588624
effective search space used: 2818588624
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Medicago: description of AC146564.8