Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146561.5 + phase: 2 /pseudo/partial
         (263 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g37460 unknown protein                                             300  5e-82
At2g33020 putative leucine-rich repeat disease resistance protein      32  0.45
At2g33050 leucine-rich repeat disease resistance like protein          31  0.59
At4g04220 putative disease resistance protein, predicted GPI-anc...    30  1.3
At3g25010 disease resistance protein, putative                         30  1.3
At4g23050 putative serine/threonine kinase                             28  3.8
At2g15080 putative disease resistance protein                          28  3.8
At1g28440 unknown protein                                              28  3.8
At1g51750 hypothetical protein                                         28  5.0
At2g33060 putative leucine-rich repeat disease resistance protein      28  6.6
At1g79620 unknown protein                                              28  6.6
At3g24900 leucine-rich repeat disease resistance protein, putative     27  8.6
At3g23120 disease resistance protein, putative                         27  8.6

>At4g37460 unknown protein
          Length = 869

 Score =  300 bits (768), Expect = 5e-82
 Identities = 135/202 (66%), Positives = 165/202 (80%), Gaps = 13/202 (6%)

Query: 62  EIMHAKSCSDLYKVVGEDFWSSTWCNSTAFEGKQLEGTRVTLVKMGQHGFDFAIRTPCTP 121
           +IM A++C +L+ +VGEDFW +TWC+ST  EG             G+ G+DF+IRTPCTP
Sbjct: 680 QIMRAETCDELHNIVGEDFWVATWCDSTGSEG-------------GRLGYDFSIRTPCTP 726

Query: 122 ARWEDYDAEMAMAWEALCNAYCGENYGSTDFDVLENVRDAILRMTYYWYNFMPLSRGTAA 181
           ARW D+D EM  AWEALC AYCGENYGST+ D LE VRDAILRMTYYWYNFMPL+RGTA 
Sbjct: 727 ARWSDFDEEMTSAWEALCTAYCGENYGSTELDALETVRDAILRMTYYWYNFMPLARGTAV 786

Query: 182 VGFAVMLGLLLAANMEFTGSIPQGFQVDWEAILNLDPNSFVDSVKSWLYPSLKVTTSWKD 241
            GF V+LGLLLAANMEFT +IP+G Q+DWEAILN++P SFVDSVKSWLYPSLK+ TSW+D
Sbjct: 787 TGFVVLLGLLLAANMEFTETIPKGLQIDWEAILNVEPGSFVDSVKSWLYPSLKINTSWRD 846

Query: 242 YHDVASTFATTGSVVAALSSYD 263
           + +++S F+TTG+VVAALS+Y+
Sbjct: 847 HTEISSAFSTTGAVVAALSTYN 868


>At2g33020 putative leucine-rich repeat disease resistance protein
          Length = 864

 Score = 31.6 bits (70), Expect = 0.45
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 155 LENVRDAILRMTYYWYNFMPLSRGTAAVGFAVMLGLLLAANMEFTGSIPQGFQVDWEA 212
           L N+R   LR   ++    P  +G   +GF  +    +A NM FTGS+P  F V+W+A
Sbjct: 586 LPNLRVLTLRSNKFYGPISPPHQGP--LGFPELRIFEIADNM-FTGSLPPSFFVNWKA 640


>At2g33050 leucine-rich repeat disease resistance like protein
          Length = 800

 Score = 31.2 bits (69), Expect = 0.59
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 155 LENVRDAILRMTYYWYNFMPLSRGTAAVGFAVMLGLLLAANMEFTGSIPQGFQVDWEAI- 213
           L N+    LR   ++ +  P  RG  A      L +L  ++  FTGS+P  F V+W+A  
Sbjct: 495 LPNLHVLTLRSNRFFGHLSPPDRGPLAFP---ELRILELSDNSFTGSLPPNFFVNWKASS 551

Query: 214 --LNLDPNSFVDSVKSWLY 230
             +N D   ++   K+  Y
Sbjct: 552 PKINEDGRIYMGDYKNAYY 570


>At4g04220 putative disease resistance protein, predicted
           GPI-anchored protein
          Length = 766

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 156 ENVRDAILRMTYYWYNFMPLSRGT------AAVGFAVMLGLLLAANMEFTGSIPQGFQVD 209
           +N +  +    +Y Y  + LS+         ++G    L +L  +N EF+G IPQ F  D
Sbjct: 585 KNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSLGNLKSLKVLNLSNNEFSGLIPQSFG-D 643

Query: 210 WEAILNLD 217
            E + +LD
Sbjct: 644 LEKVESLD 651


>At3g25010 disease resistance protein, putative
          Length = 881

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 154 VLENVRDAILRMTYYWYNFMPLSRGTAAVGFAVMLGLLLAANMEFTGSIPQGFQVDWEA 212
           VL  ++  +L    ++    P ++G+  +GF  +  L +A N + TGS+PQ F V+W+A
Sbjct: 599 VLPKLQVLLLSSNKFYGPLSPPNQGS--LGFPELRILEIAGN-KLTGSLPQDFFVNWKA 654


>At4g23050 putative serine/threonine kinase
          Length = 736

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 28  ERTLDIAKTVMKERSYVHGKTDQIIHLSNDGKLEEIMHAKSCSDLYKVVGEDFWSSTWCN 87
           +R L +A  V +  +Y+H +   I+H   D K   ++  K+    + V   DF  S W N
Sbjct: 564 KRRLRMALDVARGMNYLHRRNPPIVH--RDLKSSNLLVDKN----WNVKVGDFGLSKWKN 617

Query: 88  STAFEGKQLEGT 99
           +T    K  +GT
Sbjct: 618 ATFLSTKSGKGT 629


>At2g15080 putative disease resistance protein
          Length = 983

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 197 EFTGSIPQGFQVDWEAILNLDPN 219
           +F G++P  F V+W A+ +LD N
Sbjct: 732 QFNGTLPANFFVNWTAMFSLDEN 754


>At1g28440 unknown protein
          Length = 996

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 181 AVGFAVMLGLLLAANMEFTGSIPQ 204
           ++G A  L LL+ +N EFTGS+P+
Sbjct: 439 SIGGASNLSLLILSNNEFTGSLPE 462


>At1g51750 hypothetical protein
          Length = 629

 Score = 28.1 bits (61), Expect = 5.0
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 206 FQVDWEAILNLDPNSFVDSVKSWLYP---SLKVTTSWKDYHD 244
           F  DW+ I+N    +  D ++S+L      L V T WK+ +D
Sbjct: 540 FSTDWQTIVNYISETQTDRIRSFLSRYIFQLTVHTVWKERND 581


>At2g33060 putative leucine-rich repeat disease resistance protein
          Length = 800

 Score = 27.7 bits (60), Expect = 6.6
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 155 LENVRDAILRMTYYWYNFMPLSRGTAAVGFAVMLGLLLAANMEFTGSIPQGFQVDWEA 212
           L +++   LR   +     P  RG  A      L +L  ++  FTGS+P  + V+WEA
Sbjct: 497 LPDLQALTLRSNKFHGPISPPDRGPLAFP---KLRILEISDNNFTGSLPPNYFVNWEA 551


>At1g79620 unknown protein
          Length = 971

 Score = 27.7 bits (60), Expect = 6.6
 Identities = 34/133 (25%), Positives = 52/133 (38%), Gaps = 11/133 (8%)

Query: 120 TPARWEDYDAEMAMAWEAL-CNAYCGENYGSTDFDVLENVRDAILRMTYYWYNFMPLSRG 178
           TP  W   D      WE + CN       G +   +   +   I  +       +  +RG
Sbjct: 50  TPPSWGGSDDPCGTPWEGVSCNNSRITALGLSTMGLKGRLSGDIGELAELRSLDLSFNRG 109

Query: 179 -----TAAVGFAVMLGLLLAANMEFTGSIPQ--GFQVDWEAILNLDPNSFVDSVKSWLYP 231
                T+ +G    L +L+ A   FTG+IP   G+  D  + L L+ N+F   + + L  
Sbjct: 110 LTGSLTSRLGDLQKLNILILAGCGFTGTIPNELGYLKDL-SFLALNSNNFTGKIPASLGN 168

Query: 232 SLKVTTSWKDYHD 244
             KV   W D  D
Sbjct: 169 LTKV--YWLDLAD 179


>At3g24900 leucine-rich repeat disease resistance protein, putative
          Length = 884

 Score = 27.3 bits (59), Expect = 8.6
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 155 LENVRDAILRMTYYWYNFMPLSRGTAAVGFAVMLGLLLAANMEFTGSIPQGFQVDWEA 212
           L  ++  IL    ++    P ++G+  +GF  +  L +A N +FTGS+P  F  +W+A
Sbjct: 601 LPKLQVLILHSNNFYGPLSPPNQGS--LGFPELRILEIAGN-KFTGSLPPDFFENWKA 655


>At3g23120 disease resistance protein, putative
          Length = 784

 Score = 27.3 bits (59), Expect = 8.6
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 174 PLSRGTAAVGFAVMLGLLLAANMEFTGSIPQGFQVDW 210
           P+   T  +GF   L ++  +N +F GS+PQ +  +W
Sbjct: 510 PVYNSTTYLGFP-RLSIIDISNNDFVGSLPQDYFANW 545


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.319    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,152,471
Number of Sequences: 26719
Number of extensions: 256878
Number of successful extensions: 633
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 621
Number of HSP's gapped (non-prelim): 20
length of query: 263
length of database: 11,318,596
effective HSP length: 97
effective length of query: 166
effective length of database: 8,726,853
effective search space: 1448657598
effective search space used: 1448657598
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)


Medicago: description of AC146561.5